AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480020408.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480020408.01.T01 MTR_4g050300 59.218 179 16 4 1 122 1 179 3.05e-63 191
MsG0480020408.01.T01 MTR_2g087740 44.041 193 37 7 1 122 3 195 8.84e-37 124
MsG0480020408.01.T01 MTR_4g114730 34.118 170 51 6 7 115 12 181 1.69e-19 79.7
MsG0480020408.01.T01 MTR_4g025900 37.037 162 30 5 11 102 25 184 3.78e-19 79.3
MsG0480020408.01.T01 MTR_4g101660 33.333 192 51 7 8 122 17 208 3.07e-18 77.0
MsG0480020408.01.T01 MTR_5g034030 35.833 120 30 3 9 81 12 131 9.48e-13 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480020408.01.T01 AT1G08465 36.559 186 52 7 1 122 1 184 6.35e-26 96.3
MsG0480020408.01.T01 AT2G26580 37.576 165 44 6 1 108 1 163 3.11e-23 88.6
MsG0480020408.01.T01 AT2G26580 37.576 165 44 6 1 108 1 163 3.11e-23 88.6
MsG0480020408.01.T01 AT4G00180 60.465 43 12 1 7 44 21 63 2.81e-11 58.9

Find 29 sgRNAs with CRISPR-Local

Find 364 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCCCTCAGGTATGTTTATT+TGG 0.151095 4:+40718451 MsG0480020408.01.T01:CDS
TCCACATCTAACTGTTACTA+TGG 0.283760 4:-40718362 None:intergenic
CATTTCCCTCATATTCACTT+TGG 0.399992 4:+40723066 MsG0480020408.01.T01:CDS
ATTTCCCTCATATTCACTTT+GGG 0.416154 4:+40723067 MsG0480020408.01.T01:CDS
AAATAACTTACTTAATGAAC+CGG 0.422652 4:-40721168 None:intergenic
GGGAGTTGAGGAGGAGGAAA+TGG 0.440779 4:-40718433 None:intergenic
TGCTTCCCAAAGTGAATATG+AGG 0.444364 4:-40723072 None:intergenic
GGGACTCGTGAAAAGACTAA+TGG 0.445379 4:+40723120 MsG0480020408.01.T01:CDS
GTGTTCCTTCTGCTTACAAC+CGG 0.449198 4:+40721149 MsG0480020408.01.T01:CDS
TGGGAAGCAGCAAGCAAAGT+TGG 0.453770 4:+40723086 MsG0480020408.01.T01:CDS
TCCTCCTCCTCAACTCCCTC+AGG 0.474865 4:+40718438 MsG0480020408.01.T01:CDS
AGAATACTATACCGCTAGAA+TGG 0.519749 4:-40716533 None:intergenic
TATGTTTATATATATGCAGT+GGG 0.533636 4:+40723041 MsG0480020408.01.T01:CDS
ACCTGAGGGAGTTGAGGAGG+AGG 0.539948 4:-40718439 None:intergenic
GGAGGAAATGGCTGAAGTAA+TGG 0.547935 4:-40718421 None:intergenic
AAACATACCTGAGGGAGTTG+AGG 0.560079 4:-40718445 None:intergenic
CAGCAAGCAAAGTTGGATCA+TGG 0.562735 4:+40723093 MsG0480020408.01.T01:CDS
GCAAAGTTGGATCATGGTGA+AGG 0.573037 4:+40723099 MsG0480020408.01.T01:CDS
ATGAACCGGTTGTAAGCAGA+AGG 0.582569 4:-40721154 None:intergenic
ATATGTTTATATATATGCAG+TGG 0.588305 4:+40723040 MsG0480020408.01.T01:CDS
TAATTTGCTATCAGTTAACA+TGG 0.590629 4:+40718393 MsG0480020408.01.T01:CDS
CAAAGTTGGATCATGGTGAA+GGG 0.606710 4:+40723100 MsG0480020408.01.T01:CDS
ACCATAGTAACAGTTAGATG+TGG 0.643235 4:+40718361 MsG0480020408.01.T01:CDS
CATACCTGAGGGAGTTGAGG+AGG 0.644863 4:-40718442 None:intergenic
CTACCAAATAAACATACCTG+AGG 0.650551 4:-40718454 None:intergenic
GCTTCCCAAAGTGAATATGA+GGG 0.661736 4:-40723071 None:intergenic
TACCAAATAAACATACCTGA+GGG 0.677365 4:-40718453 None:intergenic
CTTCTGCAACACCATTCTAG+CGG 0.715968 4:+40716522 MsG0480020408.01.T01:CDS
TTTGCTATCAGTTAACATGG+TGG 0.723467 4:+40718396 MsG0480020408.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATGAAAACAAAAAAAAT+TGG - Chr4:40719978-40719997 None:intergenic 10.0%
!! AAATAAATAAATAGAAACAT+TGG - Chr4:40721489-40721508 None:intergenic 10.0%
!! AATGTATTACTATATAATAA+AGG + Chr4:40722719-40722738 MsG0480020408.01.T01:intron 10.0%
!! ATGTATTACTATATAATAAA+GGG + Chr4:40722720-40722739 MsG0480020408.01.T01:intron 10.0%
!! TAAAATAAATAAATTAGCAA+TGG + Chr4:40719130-40719149 MsG0480020408.01.T01:intron 10.0%
!! TCAAAAAAATTCAAAATATA+TGG + Chr4:40717224-40717243 MsG0480020408.01.T01:intron 10.0%
!! TTGTTGAAAAAATAATTAAT+GGG - Chr4:40716592-40716611 None:intergenic 10.0%
!!! AAAATATATATATTTTACAG+TGG - Chr4:40719586-40719605 None:intergenic 10.0%
!!! AAATTTTAAAACAAAAACTA+AGG + Chr4:40719517-40719536 MsG0480020408.01.T01:intron 10.0%
!!! CCATTATTTTATATAAAAAA+GGG - Chr4:40719484-40719503 None:intergenic 10.0%
!!! GTTTTGAATATTAATTTATA+TGG - Chr4:40721081-40721100 None:intergenic 10.0%
!!! TCCATTATTTTATATAAAAA+AGG - Chr4:40719485-40719504 None:intergenic 10.0%
!!! TGTTTCTATTTATTTATTTT+TGG + Chr4:40721490-40721509 MsG0480020408.01.T01:intron 10.0%
!!! TTTGTTACTTAAAAAAATAA+TGG - Chr4:40720495-40720514 None:intergenic 10.0%
!! AAAGAAACAAAATGTATATA+TGG - Chr4:40717994-40718013 None:intergenic 15.0%
!! AAAGGACATAAAAAAATATT+TGG - Chr4:40719559-40719578 None:intergenic 15.0%
!! AATATAAAAAAATCTAAAGG+TGG + Chr4:40722638-40722657 MsG0480020408.01.T01:intron 15.0%
!! ATCAAAAAACATTTAATTGT+AGG + Chr4:40721860-40721879 MsG0480020408.01.T01:intron 15.0%
!! ATTTATATAAATCTCATTTG+TGG - Chr4:40718880-40718899 None:intergenic 15.0%
!! ATTTATATAGACAAATTCTA+TGG + Chr4:40719432-40719451 MsG0480020408.01.T01:intron 15.0%
!! CTTGTTGAAAAAATAATTAA+TGG - Chr4:40716593-40716612 None:intergenic 15.0%
!! TCAACTAAAACTATAATATA+TGG - Chr4:40722986-40723005 None:intergenic 15.0%
!! TGAGATCAAATAATATATAA+AGG + Chr4:40716692-40716711 MsG0480020408.01.T01:intron 15.0%
!! TTAGTGAAATTAATTGTAAA+TGG + Chr4:40718265-40718284 MsG0480020408.01.T01:intron 15.0%
!! TTTCTCATAAAATATAAGTT+AGG - Chr4:40716891-40716910 None:intergenic 15.0%
!!! AATGATTTTTGGTAAAATAA+AGG + Chr4:40719229-40719248 MsG0480020408.01.T01:intron 15.0%
!!! ACATTTTGTAAAACTTTAAA+TGG - Chr4:40722704-40722723 None:intergenic 15.0%
!!! ATACTGAAGATATTTTTTTT+TGG + Chr4:40719361-40719380 MsG0480020408.01.T01:intron 15.0%
!!! ATGATTTTTGGTAAAATAAA+GGG + Chr4:40719230-40719249 MsG0480020408.01.T01:intron 15.0%
!!! ATTAAATGTTTTTTGATCAA+AGG - Chr4:40721857-40721876 None:intergenic 15.0%
!!! ATTTTGAATATAGTACTTAA+TGG - Chr4:40722911-40722930 None:intergenic 15.0%
!!! ATTTTGTAAAACTTTAAATG+GGG - Chr4:40722702-40722721 None:intergenic 15.0%
!!! CATTTTGTAAAACTTTAAAT+GGG - Chr4:40722703-40722722 None:intergenic 15.0%
!!! CCCTTTTTTATATAAAATAA+TGG + Chr4:40719481-40719500 MsG0480020408.01.T01:intron 15.0%
!!! TAATTTTTGTATTAGCTTTT+TGG + Chr4:40720178-40720197 MsG0480020408.01.T01:intron 15.0%
!!! TAGGTTTTTTTTTTTTTGAA+CGG - Chr4:40718244-40718263 None:intergenic 15.0%
!!! TTATATATGTGTTTTGAAAT+TGG + Chr4:40718297-40718316 MsG0480020408.01.T01:intron 15.0%
!!! TTTACTTTTATTTGAAGAAA+GGG + Chr4:40721360-40721379 MsG0480020408.01.T01:intron 15.0%
!!! TTTTACTTTTATTTGAAGAA+AGG + Chr4:40721359-40721378 MsG0480020408.01.T01:intron 15.0%
!!! TTTTTCTTCATCAATTTATT+TGG + Chr4:40720564-40720583 MsG0480020408.01.T01:intron 15.0%
!! AAAAAGACAAGAAAAAAATC+TGG - Chr4:40717303-40717322 None:intergenic 20.0%
!! AAACAAAATGTATATATGGT+TGG - Chr4:40717990-40718009 None:intergenic 20.0%
!! AAACTATAATATATGGCATA+TGG - Chr4:40722979-40722998 None:intergenic 20.0%
!! AAATAACTTACTTAATGAAC+CGG - Chr4:40721171-40721190 None:intergenic 20.0%
!! AAATTGTTGTAGAAATAAAG+AGG - Chr4:40717511-40717530 None:intergenic 20.0%
!! AAGAAAAAAAATTCCCAAAT+TGG - Chr4:40720552-40720571 None:intergenic 20.0%
!! AAGTAATTCTATGATCTAAA+AGG + Chr4:40717056-40717075 MsG0480020408.01.T01:intron 20.0%
!! AATATCAGAATCAGATATTA+GGG + Chr4:40717178-40717197 MsG0480020408.01.T01:intron 20.0%
!! AATCCTATAATGAGAAAATT+AGG - Chr4:40719173-40719192 None:intergenic 20.0%
!! AATTGTTGTAGAAATAAAGA+GGG - Chr4:40717510-40717529 None:intergenic 20.0%
!! AGAAAAAAAATTCCCAAATT+GGG - Chr4:40720551-40720570 None:intergenic 20.0%
!! AGATGATAAAAGATAGAAAT+TGG - Chr4:40717732-40717751 None:intergenic 20.0%
!! ATATGTTTATATATATGCAG+TGG + Chr4:40723040-40723059 MsG0480020408.01.T01:CDS 20.0%
!! ATCCTATAATGAGAAAATTA+GGG - Chr4:40719172-40719191 None:intergenic 20.0%
!! ATTTAATAACAGATTTAGAG+AGG + Chr4:40719190-40719209 MsG0480020408.01.T01:intron 20.0%
!! CACTAATTAACAGAAAAATA+AGG + Chr4:40722883-40722902 MsG0480020408.01.T01:intron 20.0%
!! CTAAATTTGAATAAACAAAG+TGG + Chr4:40720229-40720248 MsG0480020408.01.T01:intron 20.0%
!! CTTGAAAATGAAAAATCATT+CGG - Chr4:40718638-40718657 None:intergenic 20.0%
!! GAAAAACAAAACAAAAACAA+AGG - Chr4:40717206-40717225 None:intergenic 20.0%
!! TAATATCAGAATCAGATATT+AGG + Chr4:40717177-40717196 MsG0480020408.01.T01:intron 20.0%
!! TACAATTAATTTCACTAACT+AGG - Chr4:40718263-40718282 None:intergenic 20.0%
!! TATATAAATTAGATCACAAG+TGG - Chr4:40719421-40719440 None:intergenic 20.0%
!! TATGGTTGAGAAAATTAAAA+TGG - Chr4:40722961-40722980 None:intergenic 20.0%
!! TATGTTTATATATATGCAGT+GGG + Chr4:40723041-40723060 MsG0480020408.01.T01:CDS 20.0%
!! TATTGAAAAATCAACCTTAT+AGG + Chr4:40716796-40716815 MsG0480020408.01.T01:intron 20.0%
!! TATTTGTAGTTTATATTTGC+CGG + Chr4:40718558-40718577 MsG0480020408.01.T01:intron 20.0%
!! TGCTTTGTATATATTCATAT+AGG + Chr4:40720523-40720542 MsG0480020408.01.T01:intron 20.0%
!! TGTAAAAATTCAAGTCAAAA+AGG - Chr4:40720012-40720031 None:intergenic 20.0%
!! TTACTAATGCTGAAAATAAA+TGG - Chr4:40718024-40718043 None:intergenic 20.0%
!! TTCTCATTTGAACATTAATA+TGG - Chr4:40722611-40722630 None:intergenic 20.0%
!!! ATATTTATTTTTGAGAGTCA+TGG + Chr4:40720700-40720719 MsG0480020408.01.T01:intron 20.0%
!!! CTATTAGGTCAATTTTTATA+CGG - Chr4:40721753-40721772 None:intergenic 20.0%
!!! CTTATTTTTCTGTTAATTAG+TGG - Chr4:40722885-40722904 None:intergenic 20.0%
!!! GGTGATGAATATTTATATTT+TGG + Chr4:40721511-40721530 MsG0480020408.01.T01:intron 20.0%
!!! GTGTAATTTTTTTTCCTATT+AGG - Chr4:40721768-40721787 None:intergenic 20.0%
!!! TAAATTTTGCCGTTATAAAA+AGG + Chr4:40718609-40718628 MsG0480020408.01.T01:intron 20.0%
!!! TACGTAGTAAAAATGATTTT+TGG + Chr4:40719218-40719237 MsG0480020408.01.T01:intron 20.0%
!!! TATTAGGTCAATTTTTATAC+GGG - Chr4:40721752-40721771 None:intergenic 20.0%
!!! TCTTATTTGCTTTACTTAAA+CGG - Chr4:40721565-40721584 None:intergenic 20.0%
!!! TGATTTTTGGTAAAATAAAG+GGG + Chr4:40719231-40719250 MsG0480020408.01.T01:intron 20.0%
!!! TTAAAAAGCTTTTGATAACA+CGG + Chr4:40722512-40722531 MsG0480020408.01.T01:intron 20.0%
!!! TTTATTTTAGTAGTGTTTCA+AGG - Chr4:40719119-40719138 None:intergenic 20.0%
!!! TTTTGTAAAACTTTAAATGG+GGG - Chr4:40722701-40722720 None:intergenic 20.0%
!!! TTTTTTTTTTGACAAAACCA+TGG - Chr4:40722067-40722086 None:intergenic 20.0%
! AAATAGTATATACACATCCA+TGG - Chr4:40719832-40719851 None:intergenic 25.0%
! AATGTCAAAAAAAGCTTCTA+AGG - Chr4:40719806-40719825 None:intergenic 25.0%
! AATTAACATGTCTTCATGTA+GGG + Chr4:40722584-40722603 MsG0480020408.01.T01:intron 25.0%
! AATTCAAGTCAAAAAGGAAA+TGG - Chr4:40720006-40720025 None:intergenic 25.0%
! ATACAAGCATTATAACCAAT+AGG - Chr4:40716779-40716798 None:intergenic 25.0%
! ATATATAGTTGAGCTTATTG+AGG + Chr4:40718991-40719010 MsG0480020408.01.T01:intron 25.0%
! ATCTTCAGTATAATGTTTGA+AGG - Chr4:40719352-40719371 None:intergenic 25.0%
! ATGTAATAGATCTCTAAATG+AGG + Chr4:40722012-40722031 MsG0480020408.01.T01:intron 25.0%
! CATAAAAACAACAAAGCAAA+GGG - Chr4:40718173-40718192 None:intergenic 25.0%
! CATTATTTCACCATCTAAAA+AGG - Chr4:40719924-40719943 None:intergenic 25.0%
! CGTATAAAAATTGACCTAAT+AGG + Chr4:40721751-40721770 MsG0480020408.01.T01:intron 25.0%
! CTTGAAGAAATGGTTAATTT+AGG - Chr4:40720855-40720874 None:intergenic 25.0%
! GAATTAACTCAATACAAAGA+GGG + Chr4:40718913-40718932 MsG0480020408.01.T01:intron 25.0%
! GCTGAAATATCTTAAAACTT+AGG - Chr4:40718062-40718081 None:intergenic 25.0%
! GTCAAAAAAAAAAATTGCCA+TGG + Chr4:40722074-40722093 MsG0480020408.01.T01:intron 25.0%
! TAAGCTCAACTATATATACT+AGG - Chr4:40718988-40719007 None:intergenic 25.0%
! TATTTCATCACCATCTAATT+TGG + Chr4:40716630-40716649 MsG0480020408.01.T01:intron 25.0%
! TGAATTAACTCAATACAAAG+AGG + Chr4:40718912-40718931 MsG0480020408.01.T01:intron 25.0%
! TTAATCTACTTTCTCAAAAG+AGG - Chr4:40717593-40717612 None:intergenic 25.0%
! TTAATTCCAATGTTCCTATA+AGG - Chr4:40716813-40716832 None:intergenic 25.0%
! TTAGTTCAATTGTTAGAGTT+TGG - Chr4:40719073-40719092 None:intergenic 25.0%
! TTGAGAAAGTAGATTAAATC+TGG + Chr4:40717596-40717615 MsG0480020408.01.T01:intron 25.0%
! TTTGACAAACTAGTAGATTA+AGG - Chr4:40720955-40720974 None:intergenic 25.0%
! TTTGCTTGATCTCTTAAATT+AGG - Chr4:40717038-40717057 None:intergenic 25.0%
!! AACAAAGAAAAGAGTATATC+AGG + Chr4:40722806-40722825 MsG0480020408.01.T01:intron 25.0%
!! ATAGAAACATTGGAGAATTT+TGG - Chr4:40721479-40721498 None:intergenic 25.0%
!! ATATTTTACAGTGGTTTCAA+AGG - Chr4:40719577-40719596 None:intergenic 25.0%
!! ATTCGGTTTCCTTTTTATAA+CGG - Chr4:40718621-40718640 None:intergenic 25.0%
!! ATTTTATGTGTAAGAACCAA+TGG + Chr4:40719263-40719282 MsG0480020408.01.T01:intron 25.0%
!! GATTTTCAATGAACAAAGTT+AGG + Chr4:40717007-40717026 MsG0480020408.01.T01:intron 25.0%
!! GTAAATGTTTTCACATTTTG+AGG + Chr4:40717451-40717470 MsG0480020408.01.T01:intron 25.0%
!! TACTAGTTTGTCAAAAAATG+AGG + Chr4:40720960-40720979 MsG0480020408.01.T01:intron 25.0%
!! TATAAGAAAGTGTGCTTAAA+TGG - Chr4:40721410-40721429 None:intergenic 25.0%
!! TGTTTGAAGAATGTATGTTT+TGG + Chr4:40718107-40718126 MsG0480020408.01.T01:intron 25.0%
!! TTGGTAATTGTAACTATTAC+TGG + Chr4:40720737-40720756 MsG0480020408.01.T01:intron 25.0%
!! TTTTGATCAAAGGTTTAAGA+TGG - Chr4:40721847-40721866 None:intergenic 25.0%
!!! ATGGTTAATTTAGGTTTTCT+TGG - Chr4:40720846-40720865 None:intergenic 25.0%
!!! ATGTGTTTTGAAATTGGAAA+TGG + Chr4:40718303-40718322 MsG0480020408.01.T01:intron 25.0%
!!! ATTTTGGAGTACTTTTCTTT+AGG + Chr4:40721527-40721546 MsG0480020408.01.T01:intron 25.0%
!!! TAATTTGCTATCAGTTAACA+TGG + Chr4:40718393-40718412 MsG0480020408.01.T01:CDS 25.0%
!!! TACTATTTACCACTTTTGTT+AGG + Chr4:40719844-40719863 MsG0480020408.01.T01:intron 25.0%
AAAATGTATATATGGTTGGC+AGG - Chr4:40717986-40718005 None:intergenic 30.0%
AAGATGATAAATAAGCTAGC+AGG - Chr4:40717963-40717982 None:intergenic 30.0%
AATAATTCTGTTAAGCAGCA+AGG + Chr4:40720053-40720072 MsG0480020408.01.T01:intron 30.0%
AATCAACCTTATAGGAACAT+TGG + Chr4:40716804-40716823 MsG0480020408.01.T01:intron 30.0%
ACAATATTCTCTACACACAA+AGG + Chr4:40721909-40721928 MsG0480020408.01.T01:intron 30.0%
ACTCAATTTGCCAAATTAGA+TGG - Chr4:40716643-40716662 None:intergenic 30.0%
AGAAAACACAAAAGAAGAGA+TGG - Chr4:40716565-40716584 None:intergenic 30.0%
ATAACTAGTGGTTAAGACTT+TGG + Chr4:40717647-40717666 MsG0480020408.01.T01:intron 30.0%
ATGTATGATTGTTGTCATTC+AGG - Chr4:40720281-40720300 None:intergenic 30.0%
ATTAAAACACAACATTGCCA+TGG + Chr4:40722047-40722066 MsG0480020408.01.T01:intron 30.0%
ATTCATATAGGTTCCCAATT+TGG + Chr4:40720535-40720554 MsG0480020408.01.T01:intron 30.0%
ATTTCCCTCATATTCACTTT+GGG + Chr4:40723067-40723086 MsG0480020408.01.T01:CDS 30.0%
CAATCAAAACACGTTGAAAA+CGG + Chr4:40722441-40722460 MsG0480020408.01.T01:intron 30.0%
CAATTAACATGTCTTCATGT+AGG + Chr4:40722583-40722602 MsG0480020408.01.T01:intron 30.0%
CATAGCTAGAGTCAAATTTA+TGG + Chr4:40717128-40717147 MsG0480020408.01.T01:intron 30.0%
CATATATAAACTTCTTGCCA+TGG - Chr4:40716946-40716965 None:intergenic 30.0%
GAAAATTCACTTCAACATGA+TGG - Chr4:40716841-40716860 None:intergenic 30.0%
GAGTGAGTAATAATAACTAG+TGG + Chr4:40717635-40717654 MsG0480020408.01.T01:intron 30.0%
GCATAAAAACAACAAAGCAA+AGG - Chr4:40718174-40718193 None:intergenic 30.0%
GTATTCTACTAAAAATCACG+AGG - Chr4:40722665-40722684 None:intergenic 30.0%
TACCAAATAAACATACCTGA+GGG - Chr4:40718456-40718475 None:intergenic 30.0%
TAGAGATCTATTACATCTGT+TGG - Chr4:40722008-40722027 None:intergenic 30.0%
TAGCTAAAAGTCCATGATTA+GGG + Chr4:40717153-40717172 MsG0480020408.01.T01:intron 30.0%
TATTGTCTTGCTTGAAGAAA+TGG - Chr4:40720865-40720884 None:intergenic 30.0%
TCTGATATTAACCCTAATCA+TGG - Chr4:40717167-40717186 None:intergenic 30.0%
TGGCAAGAAGTTTATATATG+TGG + Chr4:40716946-40716965 MsG0480020408.01.T01:intron 30.0%
TGTATGATTGTTGTCATTCA+GGG - Chr4:40720280-40720299 None:intergenic 30.0%
TTCATATAGGTTCCCAATTT+GGG + Chr4:40720536-40720555 MsG0480020408.01.T01:intron 30.0%
TTCTTCAAGCAAGACAATAA+AGG + Chr4:40720866-40720885 MsG0480020408.01.T01:intron 30.0%
TTTAGTAGTGTTTCAAGGTT+GGG - Chr4:40719114-40719133 None:intergenic 30.0%
TTTGTCATGTTCAAGTAACA+TGG - Chr4:40718945-40718964 None:intergenic 30.0%
TTTGTGTGTAGAGAATATTG+TGG - Chr4:40721910-40721929 None:intergenic 30.0%
! AACATTGATTGACATGGTAA+AGG + Chr4:40722264-40722283 MsG0480020408.01.T01:intron 30.0%
! CATTGAGATGAAAGCTTTTT+GGG + Chr4:40722133-40722152 MsG0480020408.01.T01:intron 30.0%
! CTCCCTAATTTTCTCATTAT+AGG + Chr4:40719167-40719186 MsG0480020408.01.T01:intron 30.0%
! GAGAGTCATGGTAATAATTT+TGG + Chr4:40720712-40720731 MsG0480020408.01.T01:intron 30.0%
! GATCTCTTTACCTTTTTAGA+TGG + Chr4:40719911-40719930 MsG0480020408.01.T01:intron 30.0%
! GTTGAAAACATTGATTGACA+TGG + Chr4:40722258-40722277 MsG0480020408.01.T01:intron 30.0%
! TCTATGTTCACTGAGATTTT+AGG - Chr4:40718808-40718827 None:intergenic 30.0%
! TGTTGATATGGTTTTCTTTC+TGG + Chr4:40718504-40718523 MsG0480020408.01.T01:intron 30.0%
! TTGGTGTATGAATTTTCTCT+TGG + Chr4:40718126-40718145 MsG0480020408.01.T01:intron 30.0%
! TTTGGGAAAGAATCCAATTT+TGG + Chr4:40722150-40722169 MsG0480020408.01.T01:intron 30.0%
! TTTTAGTAGTGTTTCAAGGT+TGG - Chr4:40719115-40719134 None:intergenic 30.0%
!! AATTTGCTATGCTATGAGAA+AGG - Chr4:40717563-40717582 None:intergenic 30.0%
!! CATGGTAATAATTTTGGCAT+TGG + Chr4:40720718-40720737 MsG0480020408.01.T01:intron 30.0%
!! CATTAGTATTGGTGTTGATA+TGG + Chr4:40718492-40718511 MsG0480020408.01.T01:intron 30.0%
!! GCTTTTAGAAGTTAAGACTT+AGG + Chr4:40719943-40719962 MsG0480020408.01.T01:intron 30.0%
!! TCCATATTGTCTTGTTTGTA+GGG + Chr4:40721590-40721609 MsG0480020408.01.T01:intron 30.0%
!! TTCCATATTGTCTTGTTTGT+AGG + Chr4:40721589-40721608 MsG0480020408.01.T01:intron 30.0%
!!! CTTTTTTTGACATTGAACCA+TGG + Chr4:40719812-40719831 MsG0480020408.01.T01:intron 30.0%
!!! TGTTTTTTCTCATTTCGTGA+AGG - Chr4:40721985-40722004 None:intergenic 30.0%
!!! TTGTGGTTGAATCCTTTTTT+TGG - Chr4:40721893-40721912 None:intergenic 30.0%
!!! TTTTAAGATATTTCAGCCTC+TGG + Chr4:40718065-40718084 MsG0480020408.01.T01:intron 30.0%
AAAAACTAGCTAGCATAGCA+TGG + Chr4:40720352-40720371 MsG0480020408.01.T01:intron 35.0%
AAACACGTTGAAAACGGATA+CGG + Chr4:40722447-40722466 MsG0480020408.01.T01:intron 35.0%
AAACCAATCAACATTACCAG+AGG - Chr4:40718084-40718103 None:intergenic 35.0%
AAAGTGGCAACTACTAACTA+GGG + Chr4:40720245-40720264 MsG0480020408.01.T01:intron 35.0%
AACGAGCCAATAAGTGATTT+GGG + Chr4:40722301-40722320 MsG0480020408.01.T01:intron 35.0%
AAGTTAGGTGGCATTAGTAT+TGG + Chr4:40718481-40718500 MsG0480020408.01.T01:intron 35.0%
AATCACTTCCACTCCAAAAT+TGG - Chr4:40722166-40722185 None:intergenic 35.0%
ACCATAGTAACAGTTAGATG+TGG + Chr4:40718361-40718380 MsG0480020408.01.T01:CDS 35.0%
ACTGGTATTCAGTTAGTGAT+CGG + Chr4:40720755-40720774 MsG0480020408.01.T01:intron 35.0%
AGAATACTATACCGCTAGAA+TGG - Chr4:40716536-40716555 None:intergenic 35.0%
AGAGATGAAAATGACTTGAC+TGG - Chr4:40717684-40717703 None:intergenic 35.0%
AGGATGACAGCAATGAATTA+AGG - Chr4:40720636-40720655 None:intergenic 35.0%
ATAGTTGAGCTTATTGAGGA+TGG + Chr4:40718995-40719014 MsG0480020408.01.T01:intron 35.0%
ATGGTTAACAAACTGCTGTA+TGG - Chr4:40718346-40718365 None:intergenic 35.0%
CAGGAACGCTATAAAATAAG+TGG + Chr4:40722825-40722844 MsG0480020408.01.T01:intron 35.0%
CATCATTCTCCTAACAAAAG+TGG - Chr4:40719856-40719875 None:intergenic 35.0%
CATTTCCCTCATATTCACTT+TGG + Chr4:40723066-40723085 MsG0480020408.01.T01:CDS 35.0%
CCAAAAAGCTTTCATCTCAA+TGG - Chr4:40722135-40722154 None:intergenic 35.0%
CTACCAAATAAACATACCTG+AGG - Chr4:40718457-40718476 None:intergenic 35.0%
CTAGCTAAAAGTCCATGATT+AGG + Chr4:40717152-40717171 MsG0480020408.01.T01:intron 35.0%
CTTCATCAATTTATTTGGCC+CGG + Chr4:40720569-40720588 MsG0480020408.01.T01:intron 35.0%
GACAGCAATGAATTAAGGAT+GGG - Chr4:40720631-40720650 None:intergenic 35.0%
GATCTTCATAAACTCTACCA+TGG + Chr4:40716926-40716945 MsG0480020408.01.T01:intron 35.0%
GGAGGAAATTCAAAGGATTA+AGG + Chr4:40721611-40721630 MsG0480020408.01.T01:intron 35.0%
GTAGGAGAGTAACCAAAAAA+AGG + Chr4:40721878-40721897 MsG0480020408.01.T01:intron 35.0%
GTATGATTGTTGTCATTCAG+GGG - Chr4:40720279-40720298 None:intergenic 35.0%
TACACTGCATCTGTACTTAA+GGG - Chr4:40717487-40717506 None:intergenic 35.0%
TACCTAAAGATACCAACCAT+TGG - Chr4:40719282-40719301 None:intergenic 35.0%
TATGATTGTTGTCATTCAGG+GGG - Chr4:40720278-40720297 None:intergenic 35.0%
TATGTGTAAGAACCAATGGT+TGG + Chr4:40719267-40719286 MsG0480020408.01.T01:intron 35.0%
TCAATTGAGCTAAGACCTAT+TGG + Chr4:40716761-40716780 MsG0480020408.01.T01:intron 35.0%
TCCACATCTAACTGTTACTA+TGG - Chr4:40718365-40718384 None:intergenic 35.0%
TCCCTACAAACAAGACAATA+TGG - Chr4:40721594-40721613 None:intergenic 35.0%
TGACAGCAATGAATTAAGGA+TGG - Chr4:40720632-40720651 None:intergenic 35.0%
TGATGAATTGCACCAAATCA+AGG - Chr4:40717378-40717397 None:intergenic 35.0%
TGCAACTAGCAAACATAGAT+GGG - Chr4:40721266-40721285 None:intergenic 35.0%
TTCTGTACAAATCCATGTGA+TGG + Chr4:40717322-40717341 MsG0480020408.01.T01:intron 35.0%
TTGGATGTTCCACCTATATA+CGG + Chr4:40718145-40718164 MsG0480020408.01.T01:intron 35.0%
TTTCGTCCCAAATCACTTAT+TGG - Chr4:40722310-40722329 None:intergenic 35.0%
TTTGTAGGGAGGAAATTCAA+AGG + Chr4:40721604-40721623 MsG0480020408.01.T01:intron 35.0%
! AACCAATGGTTGGTATCTTT+AGG + Chr4:40719277-40719296 MsG0480020408.01.T01:intron 35.0%
! AGACACGATTCGACTTTTAA+TGG + Chr4:40721809-40721828 MsG0480020408.01.T01:intron 35.0%
! ATCTATGTTTGCTAGTTGCA+GGG + Chr4:40721266-40721285 MsG0480020408.01.T01:intron 35.0%
! ATGTCTTTTCTCTATAGCTG+TGG - Chr4:40721128-40721147 None:intergenic 35.0%
! CCATTGAGATGAAAGCTTTT+TGG + Chr4:40722132-40722151 MsG0480020408.01.T01:intron 35.0%
! TTATTTGGTAGCCTCAAGTT+AGG + Chr4:40718466-40718485 MsG0480020408.01.T01:intron 35.0%
! TTGGGCTTTAATTCAATGAG+AGG - Chr4:40719096-40719115 None:intergenic 35.0%
! TTGGGGGATAATCCAATTTT+GGG + Chr4:40722202-40722221 MsG0480020408.01.T01:intron 35.0%
! TTTGCTATCAGTTAACATGG+TGG + Chr4:40718396-40718415 MsG0480020408.01.T01:CDS 35.0%
! TTTGGGGGATAATCCAATTT+TGG + Chr4:40722201-40722220 MsG0480020408.01.T01:intron 35.0%
!! AAAGGACTCTGGGATAAAAT+TGG + Chr4:40720884-40720903 MsG0480020408.01.T01:intron 35.0%
!! AAATCACTTATTGGCTCGTT+CGG - Chr4:40722301-40722320 None:intergenic 35.0%
!! AGAGAGAGTCTACTTTTAAG+GGG - Chr4:40717896-40717915 None:intergenic 35.0%
!! ATATTGTCTTGTTTGTAGGG+AGG + Chr4:40721593-40721612 MsG0480020408.01.T01:intron 35.0%
!! ATCAACACACTATTTTCGAG+AGG + Chr4:40721311-40721330 MsG0480020408.01.T01:intron 35.0%
!! GAAAGAATCCAATTTTGGAG+TGG + Chr4:40722155-40722174 MsG0480020408.01.T01:intron 35.0%
!! GAAATTGGAAATGGATTGAC+AGG + Chr4:40718312-40718331 MsG0480020408.01.T01:intron 35.0%
!! GAGAGAGAGTCTACTTTTAA+GGG - Chr4:40717897-40717916 None:intergenic 35.0%
!! GTTGATTTCATGGGCATTTT+AGG + Chr4:40721943-40721962 MsG0480020408.01.T01:intron 35.0%
!! TCTGGTGTTGCATCTATATA+CGG + Chr4:40718522-40718541 MsG0480020408.01.T01:intron 35.0%
!! TGAGAGAGAGTCTACTTTTA+AGG - Chr4:40717898-40717917 None:intergenic 35.0%
!!! ATAATCCAATTTTGGGGTGA+AGG + Chr4:40722209-40722228 MsG0480020408.01.T01:intron 35.0%
!!! ATGTTTTCACATTTTGAGGC+TGG + Chr4:40717455-40717474 MsG0480020408.01.T01:intron 35.0%
!!! ATTTTGGAGTGGAAGTGATT+TGG + Chr4:40722166-40722185 MsG0480020408.01.T01:intron 35.0%
!!! CGTTTTCAACGTGTTTTGAT+TGG - Chr4:40722443-40722462 None:intergenic 35.0%
!!! TTTTGGAGTGGAAGTGATTT+GGG + Chr4:40722167-40722186 MsG0480020408.01.T01:intron 35.0%
AAATCATGCTTGCCATCACA+TGG - Chr4:40717337-40717356 None:intergenic 40.0%
AACACGTTGAAAACGGATAC+GGG + Chr4:40722448-40722467 MsG0480020408.01.T01:intron 40.0%
ACTAGTGGTTAAGACTTTGG+TGG + Chr4:40717650-40717669 MsG0480020408.01.T01:intron 40.0%
AGCAAGACAATAAAGGACTC+TGG + Chr4:40720873-40720892 MsG0480020408.01.T01:intron 40.0%
ATCTAGCTGGACAATTGTAG+TGG + Chr4:40717863-40717882 MsG0480020408.01.T01:intron 40.0%
ATGATTGTTGTCATTCAGGG+GGG - Chr4:40720277-40720296 None:intergenic 40.0%
ATGCATGCATGTGTTCTACT+AGG - Chr4:40720663-40720682 None:intergenic 40.0%
ATGCTTTACAGCACTATGGT+TGG - Chr4:40717422-40717441 None:intergenic 40.0%
ATGTGATGGCAAGCATGATT+TGG + Chr4:40717336-40717355 MsG0480020408.01.T01:intron 40.0%
CAAAGTGGCAACTACTAACT+AGG + Chr4:40720244-40720263 MsG0480020408.01.T01:intron 40.0%
CAAAGTTGGATCATGGTGAA+GGG + Chr4:40723100-40723119 MsG0480020408.01.T01:CDS 40.0%
CTCCCTCAGGTATGTTTATT+TGG + Chr4:40718451-40718470 MsG0480020408.01.T01:CDS 40.0%
CTCTACACACAAAGGTTTGT+CGG + Chr4:40721917-40721936 MsG0480020408.01.T01:intron 40.0%
CTGCAACTAGCAAACATAGA+TGG - Chr4:40721267-40721286 None:intergenic 40.0%
CTGTTAAGCAGCAAGGAAAT+TGG + Chr4:40720060-40720079 MsG0480020408.01.T01:intron 40.0%
CTTGATGCTTTACAGCACTA+TGG - Chr4:40717426-40717445 None:intergenic 40.0%
GAACGAGCCAATAAGTGATT+TGG + Chr4:40722300-40722319 MsG0480020408.01.T01:intron 40.0%
GCAAGACAATAAAGGACTCT+GGG + Chr4:40720874-40720893 MsG0480020408.01.T01:intron 40.0%
GCTAGATGAAAATGTGTGTG+TGG - Chr4:40717850-40717869 None:intergenic 40.0%
GCTTCCCAAAGTGAATATGA+GGG - Chr4:40723074-40723093 None:intergenic 40.0%
GTACACTGCATCTGTACTTA+AGG - Chr4:40717488-40717507 None:intergenic 40.0%
TAATCCAGATATCAGCCACA+GGG + Chr4:40721638-40721657 MsG0480020408.01.T01:intron 40.0%
TACTAATGCCACCTAACTTG+AGG - Chr4:40718480-40718499 None:intergenic 40.0%
TCTCTCCTATGTCCTTGATT+TGG + Chr4:40717363-40717382 MsG0480020408.01.T01:intron 40.0%
TGCACAAGACGAACAAAGAT+CGG - Chr4:40718196-40718215 None:intergenic 40.0%
TGCATGCATGTGTTCTACTA+GGG - Chr4:40720662-40720681 None:intergenic 40.0%
TGCTTCCCAAAGTGAATATG+AGG - Chr4:40723075-40723094 None:intergenic 40.0%
TTGCACCAAATCAAGGACAT+AGG - Chr4:40717371-40717390 None:intergenic 40.0%
TTGGGACAGAAAGCGATTTA+GGG + Chr4:40722236-40722255 MsG0480020408.01.T01:intron 40.0%
! AATTGCCATGGTGATTTTCG+AGG + Chr4:40722086-40722105 MsG0480020408.01.T01:intron 40.0%
! ATTGCCATGGTGATTTTCGA+GGG + Chr4:40722087-40722106 MsG0480020408.01.T01:intron 40.0%
! ATTTGGGACGAAAGCGATTT+GGG + Chr4:40722317-40722336 MsG0480020408.01.T01:intron 40.0%
! CACACACATTTTCATCTAGC+TGG + Chr4:40717850-40717869 MsG0480020408.01.T01:intron 40.0%
! CATCTATGTTTGCTAGTTGC+AGG + Chr4:40721265-40721284 MsG0480020408.01.T01:intron 40.0%
! TGGGGGATAATCCAATTTTG+GGG + Chr4:40722203-40722222 MsG0480020408.01.T01:intron 40.0%
! TTTGGAGTGGAAGTGATTTG+GGG + Chr4:40722168-40722187 MsG0480020408.01.T01:intron 40.0%
!! CACTTTTTACTGACACTGCA+AGG - Chr4:40717757-40717776 None:intergenic 40.0%
!! GAGAGAGTCTACTTTTAAGG+GGG - Chr4:40717895-40717914 None:intergenic 40.0%
!! TGTCGGCATGTTGATTTCAT+GGG + Chr4:40721934-40721953 MsG0480020408.01.T01:intron 40.0%
!! TTGTCGGCATGTTGATTTCA+TGG + Chr4:40721933-40721952 MsG0480020408.01.T01:intron 40.0%
!!! AGCTTTTTAAGTCCTCCACT+AGG - Chr4:40722502-40722521 None:intergenic 40.0%
!!! GATCCAGTACTTTTTTGGAC+AGG - Chr4:40719459-40719478 None:intergenic 40.0%
!!! GCTTTTTAAGTCCTCCACTA+GGG - Chr4:40722501-40722520 None:intergenic 40.0%
AAACATACCTGAGGGAGTTG+AGG - Chr4:40718448-40718467 None:intergenic 45.0%
ATAAGCTAGCAGGAGTGAGA+AGG - Chr4:40717953-40717972 None:intergenic 45.0%
ATGAACCGGTTGTAAGCAGA+AGG - Chr4:40721157-40721176 None:intergenic 45.0%
ATTTGGGGACGAAAGCGATT+TGG + Chr4:40722183-40722202 MsG0480020408.01.T01:intron 45.0%
CAGCAAGCAAAGTTGGATCA+TGG + Chr4:40723093-40723112 MsG0480020408.01.T01:CDS 45.0%
CATGTGTTCTACTAGGGCAT+AGG - Chr4:40720656-40720675 None:intergenic 45.0%
CTTCTGCAACACCATTCTAG+CGG + Chr4:40716522-40716541 MsG0480020408.01.T01:CDS 45.0%
CTTGGGACAGAAAGCGATTT+AGG + Chr4:40722235-40722254 MsG0480020408.01.T01:intron 45.0%
GACCATGTTCATCTTGTGCA+GGG + Chr4:40718580-40718599 MsG0480020408.01.T01:intron 45.0%
GCAAAGTTGGATCATGGTGA+AGG + Chr4:40723099-40723118 MsG0480020408.01.T01:CDS 45.0%
GCAACTACTAACTAGGGACT+AGG + Chr4:40720251-40720270 MsG0480020408.01.T01:intron 45.0%
GCTTATTGAGGATGGTGAAC+AGG + Chr4:40719003-40719022 MsG0480020408.01.T01:intron 45.0%
GGAGGAAATGGCTGAAGTAA+TGG - Chr4:40718424-40718443 None:intergenic 45.0%
GGGACTCGTGAAAAGACTAA+TGG + Chr4:40723120-40723139 MsG0480020408.01.T01:CDS 45.0%
GTAATCCAGATATCAGCCAC+AGG + Chr4:40721637-40721656 MsG0480020408.01.T01:intron 45.0%
GTGGCTGATATCTGGATTAC+TGG - Chr4:40721637-40721656 None:intergenic 45.0%
GTGTTCCTTCTGCTTACAAC+CGG + Chr4:40721149-40721168 MsG0480020408.01.T01:CDS 45.0%
GTTACGTAACGTCACCATCT+TGG - Chr4:40720600-40720619 None:intergenic 45.0%
GTTCGTCTTGTGCAGAGATT+TGG + Chr4:40718202-40718221 MsG0480020408.01.T01:intron 45.0%
TAGTAGAGCACGAACATCCT+AGG + Chr4:40720126-40720145 MsG0480020408.01.T01:intron 45.0%
TGCACAAGATGAACATGGTC+CGG - Chr4:40718580-40718599 None:intergenic 45.0%
TTTGGGGACGAAAGCGATTT+GGG + Chr4:40722184-40722203 MsG0480020408.01.T01:intron 45.0%
! ATGTTTGCTAGTTGCAGGGT+AGG + Chr4:40721270-40721289 MsG0480020408.01.T01:intron 45.0%
! CAGCCTCTGGTAATGTTGAT+TGG + Chr4:40718078-40718097 MsG0480020408.01.T01:intron 45.0%
! GATTTGGGACGAAAGCGATT+TGG + Chr4:40722316-40722335 MsG0480020408.01.T01:intron 45.0%
! GGTCCTGTCCAAAAAAGTAC+TGG + Chr4:40719453-40719472 MsG0480020408.01.T01:intron 45.0%
! TGCAGCGAATGCAATTTGCT+GGG - Chr4:40721790-40721809 None:intergenic 45.0%
! TTTGGGACGAAAGCGATTTG+GGG + Chr4:40722318-40722337 MsG0480020408.01.T01:intron 45.0%
! TTTGGTAGCCTCAAGTTAGG+TGG + Chr4:40718469-40718488 MsG0480020408.01.T01:intron 45.0%
!! AAGCAAAGGGCACCGTATAT+AGG - Chr4:40718160-40718179 None:intergenic 45.0%
!! TTGCCATGGTGATTTTCGAG+GGG + Chr4:40722088-40722107 MsG0480020408.01.T01:intron 45.0%
!!! ATCCAATTTTGGGGTGAAGG+TGG + Chr4:40722212-40722231 MsG0480020408.01.T01:intron 45.0%
!!! CGTGTTTTGATTGGCTCGTT+CGG - Chr4:40722434-40722453 None:intergenic 45.0%
!!! GGGTCGATCCAGTACTTTTT+TGG - Chr4:40719464-40719483 None:intergenic 45.0%
!! ATTTATATAAATAAAAGAAT+AGG + Chr4:40718888-40718907 MsG0480020408.01.T01:intron 5.0%
!! TTAAATATAAAAAAATCTAA+AGG + Chr4:40722635-40722654 MsG0480020408.01.T01:intron 5.0%
AAGTCCTCCACTAGGGTTTG+AGG - Chr4:40722494-40722513 None:intergenic 50.0%
ACGTAACGTCACCATCTTGG+AGG - Chr4:40720597-40720616 None:intergenic 50.0%
ACGTTGAAAACGGATACGGG+AGG + Chr4:40722451-40722470 MsG0480020408.01.T01:intron 50.0%
AGAGTGTGACTCACGACGAA+TGG - Chr4:40720159-40720178 None:intergenic 50.0%
AGCATGGCATAGCATAGCAC+AGG + Chr4:40720368-40720387 MsG0480020408.01.T01:intron 50.0%
AGCCACCTTCACCCCAAAAT+TGG - Chr4:40722217-40722236 None:intergenic 50.0%
AGTCCTCCACTAGGGTTTGA+GGG - Chr4:40722493-40722512 None:intergenic 50.0%
CACTAGGGTTTGAGGGAGAA+TGG - Chr4:40722486-40722505 None:intergenic 50.0%
CATTCTCCCTCAAACCCTAG+TGG + Chr4:40722484-40722503 MsG0480020408.01.T01:intron 50.0%
CGTAACGTCACCATCTTGGA+GGG - Chr4:40720596-40720615 None:intergenic 50.0%
CTAGTTGCAGGGTAGGACTT+AGG + Chr4:40721277-40721296 MsG0480020408.01.T01:intron 50.0%
CTGCAGCGAATGCAATTTGC+TGG - Chr4:40721791-40721810 None:intergenic 50.0%
GAGTGTGACTCACGACGAAT+GGG - Chr4:40720158-40720177 None:intergenic 50.0%
GGACCATGTTCATCTTGTGC+AGG + Chr4:40718579-40718598 MsG0480020408.01.T01:intron 50.0%
GTAACGTCACCATCTTGGAG+GGG - Chr4:40720595-40720614 None:intergenic 50.0%
GTCCCTGCACAAGATGAACA+TGG - Chr4:40718585-40718604 None:intergenic 50.0%
TGGGAAGCAGCAAGCAAAGT+TGG + Chr4:40723086-40723105 MsG0480020408.01.T01:CDS 50.0%
TTGGGGACGAAAGCGATTTG+GGG + Chr4:40722185-40722204 MsG0480020408.01.T01:intron 50.0%
! TTGGGACGAAAGCGATTTGG+GGG + Chr4:40722319-40722338 MsG0480020408.01.T01:intron 50.0%
!! CAAAGGGCACCGTATATAGG+TGG - Chr4:40718157-40718176 None:intergenic 50.0%
!! TGCCATGGTGATTTTCGAGG+GGG + Chr4:40722089-40722108 MsG0480020408.01.T01:intron 50.0%
!!! ATTTTGGGGTGAAGGTGGCT+TGG + Chr4:40722217-40722236 MsG0480020408.01.T01:intron 50.0%
!!! TTTTGGGGTGAAGGTGGCTT+GGG + Chr4:40722218-40722237 MsG0480020408.01.T01:intron 50.0%
ACCCCCCTCGAAAATCACCA+TGG - Chr4:40722094-40722113 None:intergenic 55.0%
CATACCTGAGGGAGTTGAGG+AGG - Chr4:40718445-40718464 None:intergenic 55.0%
CGACGAATGGGAGGAATCCT+AGG - Chr4:40720146-40720165 None:intergenic 55.0%
GGGAGTTGAGGAGGAGGAAA+TGG - Chr4:40718436-40718455 None:intergenic 55.0%
TCCAGATATCAGCCACAGGG+AGG + Chr4:40721641-40721660 MsG0480020408.01.T01:intron 55.0%
TCTCCCTCAAACCCTAGTGG+AGG + Chr4:40722487-40722506 MsG0480020408.01.T01:intron 55.0%
TGTGACTCACGACGAATGGG+AGG - Chr4:40720155-40720174 None:intergenic 55.0%
! TGGGGACGAAAGCGATTTGG+GGG + Chr4:40722186-40722205 MsG0480020408.01.T01:intron 55.0%
!! GCCATGGTGATTTTCGAGGG+GGG + Chr4:40722090-40722109 MsG0480020408.01.T01:intron 55.0%
!!! TGATTTTCGAGGGGGGTGCT+CGG + Chr4:40722097-40722116 MsG0480020408.01.T01:intron 55.0%
ACCTGAGGGAGTTGAGGAGG+AGG - Chr4:40718442-40718461 None:intergenic 60.0%
CAGGGAGGCTTTCAGCTCAG+CGG + Chr4:40721656-40721675 MsG0480020408.01.T01:intron 60.0%
CTGAGCTGAAAGCCTCCCTG+TGG - Chr4:40721656-40721675 None:intergenic 60.0%
GCCTCCCTGTGGCTGATATC+TGG - Chr4:40721645-40721664 None:intergenic 60.0%
TCCTCCTCCTCAACTCCCTC+AGG + Chr4:40718438-40718457 MsG0480020408.01.T01:CDS 60.0%
CGTCACCATCTTGGAGGGGC+CGG - Chr4:40720591-40720610 None:intergenic 65.0%
GTCACCATCTTGGAGGGGCC+GGG - Chr4:40720590-40720609 None:intergenic 65.0%
TTGGCCCGGCCCCTCCAAGA+TGG + Chr4:40720583-40720602 MsG0480020408.01.T01:intron 70.0%
Chromosome Type Strat End Strand Name
Chr4 gene 40716472 40723152 40716472 ID=MsG0480020408.01;Name=MsG0480020408.01
Chr4 mRNA 40716472 40723152 40716472 ID=MsG0480020408.01.T01;Parent=MsG0480020408.01;Name=MsG0480020408.01.T01;_AED=0.47;_eAED=0.52;_QI=0|0|0|1|0|0|4|0|122
Chr4 exon 40716472 40716548 40716472 ID=MsG0480020408.01.T01:exon:4245;Parent=MsG0480020408.01.T01
Chr4 exon 40718354 40718472 40718354 ID=MsG0480020408.01.T01:exon:4246;Parent=MsG0480020408.01.T01
Chr4 exon 40721131 40721179 40721131 ID=MsG0480020408.01.T01:exon:4247;Parent=MsG0480020408.01.T01
Chr4 exon 40723029 40723152 40723029 ID=MsG0480020408.01.T01:exon:4248;Parent=MsG0480020408.01.T01
Chr4 CDS 40716472 40716548 40716472 ID=MsG0480020408.01.T01:cds;Parent=MsG0480020408.01.T01
Chr4 CDS 40718354 40718472 40718354 ID=MsG0480020408.01.T01:cds;Parent=MsG0480020408.01.T01
Chr4 CDS 40721131 40721179 40721131 ID=MsG0480020408.01.T01:cds;Parent=MsG0480020408.01.T01
Chr4 CDS 40723029 40723152 40723029 ID=MsG0480020408.01.T01:cds;Parent=MsG0480020408.01.T01
Gene Sequence

>MsG0480020408.01.T01

ATGTCAATGGACATGATTGCAACAGAACGTGTTTGTTATGTTCACTGCAACTTCTGCAACACCATTCTAGCGGTATATTTGTTAACCATAGTAACAGTTAGATGTGGACATTGTGCTAATTTGCTATCAGTTAACATGGTGGCACCATTACTTCAGCCATTTCCTCCTCCTCAACTCCCTCAGGTATGTTTATTTGCTATAGAGAAAAGACATCGTGTTCCTTCTGCTTACAACCGGTTCATTAACTATTACTTTTATATGTTTATATATATGCAGTGGGCACATTTCCCTCATATTCACTTTGGGAAGCAGCAAGCAAAGTTGGATCATGGTGAAGGGACTCGTGAAAAGACTAATGGATTCTACTGA

Protein sequence

>MsG0480020408.01.T01

MSMDMIATERVCYVHCNFCNTILAVYLLTIVTVRCGHCANLLSVNMVAPLLQPFPPPQLPQVCLFAIEKRHRVPSAYNRFINYYFYMFIYMQWAHFPHIHFGKQQAKLDHGEGTREKTNGFY*