AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480020690.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480020690.01.T01 MTR_4g057210 97.396 192 5 0 1 192 1 192 7.07e-134 373
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480020690.01.T01 AT3G44890 67.513 197 59 1 1 192 1 197 3.17e-83 245

Find 52 sgRNAs with CRISPR-Local

Find 164 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTGCAACTTGCTCAAATTT+TGG 0.185092 4:+46274252 MsG0480020690.01.T01:CDS
AGAAGAAGTGTTCAAGTTAG+AGG 0.296891 4:-46272900 None:intergenic
CCATATGCTAAATGCACAAT+TGG 0.307877 4:+46275768 MsG0480020690.01.T01:three_prime_UTR
ATGTAAGTAACTAACCTTTC+GGG 0.310588 4:-46272981 None:intergenic
CCAATTGTGCATTTAGCATA+TGG 0.336549 4:-46275768 None:intergenic
CTTCCTGAGATCAGGGAAAC+AGG 0.355646 4:+46275651 MsG0480020690.01.T01:CDS
TTGTTGAACTTCCTGAGATC+AGG 0.375491 4:+46275643 MsG0480020690.01.T01:CDS
AGACGACGAGGAAATCTTAA+TGG 0.392628 4:+46275912 MsG0480020690.01.T01:three_prime_UTR
TTGGTTTCTGTTTAGTGTTA+CGG 0.401001 4:+46274400 MsG0480020690.01.T01:intron
GTGAAATTAGATTATATTGA+AGG 0.401514 4:+46273069 MsG0480020690.01.T01:intron
GGAATCAGTTGGGGCTTTCA+AGG 0.402616 4:+46274273 MsG0480020690.01.T01:CDS
TATGGAAGTTTGAAACCTAT+TGG 0.405828 4:-46275750 None:intergenic
AAGGAAGATATTGTTGATGT+TGG 0.414771 4:+46273088 MsG0480020690.01.T01:CDS
CTCAGATTTGTGGACATAGT+TGG 0.425146 4:+46275942 MsG0480020690.01.T01:three_prime_UTR
TTAGCTAACTGAGCACCAAT+AGG 0.427202 4:+46275735 MsG0480020690.01.T01:exon
ATTGTTGATGTTGGAAAGAA+AGG 0.441220 4:+46273097 MsG0480020690.01.T01:CDS
TTCACTTTAGCTGTAACCTC+AGG 0.447429 4:-46275702 None:intergenic
GCAATCTGAGCTTTGCCACT+TGG 0.454864 4:-46273166 None:intergenic
ATGATTCATTTCTAGGGAGG+TGG 0.456120 4:+46275611 MsG0480020690.01.T01:intron
TTCCAGGGAATTGAAGATAG+AGG 0.456687 4:+46273844 MsG0480020690.01.T01:intron
TCTCCTGTTTCCCTGATCTC+AGG 0.464623 4:-46275654 None:intergenic
GAACTTCTTGATGTCAAGGC+TGG 0.471943 4:+46273121 MsG0480020690.01.T01:CDS
CACACAATTGCATAAGTTGA+AGG 0.472260 4:+46275795 MsG0480020690.01.T01:three_prime_UTR
GGTAAAGGAAAACAAATCTT+CGG 0.476682 4:+46274310 MsG0480020690.01.T01:CDS
AGATCTTGTTGACATTATCA+AGG 0.516990 4:+46274427 MsG0480020690.01.T01:CDS
GAAAACTGAATACACATTCA+AGG 0.517646 4:-46276002 None:intergenic
CATATGCTAAATGCACAATT+GGG 0.517888 4:+46275769 MsG0480020690.01.T01:three_prime_UTR
TATCATCATAACTCAAAAGA+TGG 0.520394 4:-46275825 None:intergenic
TTATCAAGGCACAGCTTCAA+AGG 0.528393 4:+46274441 MsG0480020690.01.T01:CDS
GATAGAGGAAGAAAGAATTG+AGG 0.529899 4:+46273859 MsG0480020690.01.T01:CDS
TGTAATGTTGTACTTTATGA+TGG 0.535121 4:+46276032 MsG0480020690.01.T01:three_prime_UTR
AATTGAGGCTGAGAAACAAC+GGG 0.535838 4:+46273874 MsG0480020690.01.T01:CDS
GTGAAGCGTAAAGGTGGTAA+AGG 0.535926 4:+46274295 MsG0480020690.01.T01:CDS
TGTTGAACTTCCTGAGATCA+GGG 0.538632 4:+46275644 MsG0480020690.01.T01:CDS
CGTCGTCTCGTCTGAGCCAT+CGG 0.539128 4:-46275897 None:intergenic
GCTTTCAAGGTGAAGCGTAA+AGG 0.548080 4:+46274286 MsG0480020690.01.T01:CDS
AGGTGAACTTCTTGATGTCA+AGG 0.553759 4:+46273117 MsG0480020690.01.T01:CDS
AGAAATTATTTGTTTCCAAG+TGG 0.559860 4:+46273151 MsG0480020690.01.T01:CDS
GAGGTGAAAGTGTGTTGCAA+TGG 0.588582 4:-46272881 None:intergenic
TCACTTTAGCTGTAACCTCA+GGG 0.605381 4:-46275701 None:intergenic
GAATTGAGGCTGAGAAACAA+CGG 0.614015 4:+46273873 MsG0480020690.01.T01:CDS
ACTGAATACACATTCAAGGA+GGG 0.620010 4:-46275998 None:intergenic
AAGGAAAACAAATCTTCGGA+AGG 0.620983 4:+46274314 MsG0480020690.01.T01:CDS
ATTTCTATAGGTAAAAGAAG+AGG 0.638826 4:+46274228 MsG0480020690.01.T01:intron
AACTGAATACACATTCAAGG+AGG 0.639565 4:-46275999 None:intergenic
TTCAAGGTGAAGCGTAAAGG+TGG 0.641294 4:+46274289 MsG0480020690.01.T01:CDS
TTGTGTTAACAAAACAACAA+TGG 0.649822 4:+46272832 MsG0480020690.01.T01:exon
CTGAATACACATTCAAGGAG+GGG 0.656837 4:-46275997 None:intergenic
AAAACAAAACACAGTTTGAG+CGG 0.658023 4:+46272809 MsG0480020690.01.T01:five_prime_UTR
GAAGACAAAGAAAACCCGAA+AGG 0.673698 4:+46272967 MsG0480020690.01.T01:CDS
AGAGTTAAAACTTCACCCTG+AGG 0.687129 4:+46275686 MsG0480020690.01.T01:CDS
ATGGCTCAGACGAGACGACG+AGG 0.711146 4:+46275900 MsG0480020690.01.T01:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAAATCACTATAATATTAAT+AGG + Chr4:46274779-46274798 MsG0480020690.01.T01:intron 15.0%
!! CTATTAATATTATAGTGATT+TGG - Chr4:46274781-46274800 None:intergenic 15.0%
!! TTTAACTAAACATTATCATA+AGG - Chr4:46273941-46273960 None:intergenic 15.0%
!! TTTATACCTTTCTAATAATT+GGG + Chr4:46274559-46274578 MsG0480020690.01.T01:intron 15.0%
!!! AATTTTACAAAGAAATGATA+AGG - Chr4:46273916-46273935 None:intergenic 15.0%
!!! ATAAAAATGTCATACTTTTA+TGG + Chr4:46275265-46275284 MsG0480020690.01.T01:intron 15.0%
!!! ATTTTACAAAGAAATGATAA+GGG - Chr4:46273915-46273934 None:intergenic 15.0%
!!! GAATTTTAATTTACATTAGT+AGG + Chr4:46273252-46273271 MsG0480020690.01.T01:intron 15.0%
!!! TAGAAAAAAAAAAACTTGTT+TGG + Chr4:46273756-46273775 MsG0480020690.01.T01:intron 15.0%
!!! TATGATGGTAAAAATATTTT+TGG + Chr4:46276047-46276066 MsG0480020690.01.T01:three_prime_UTR 15.0%
!!! TTTTCGATATAATTTATCAA+TGG + Chr4:46274748-46274767 MsG0480020690.01.T01:intron 15.0%
!! AAAAGAATCTTTCATTATTG+TGG - Chr4:46274720-46274739 None:intergenic 20.0%
!! GAAATTCATCATAATGAATT+AGG - Chr4:46275075-46275094 None:intergenic 20.0%
!! GTGAAATTAGATTATATTGA+AGG + Chr4:46273069-46273088 MsG0480020690.01.T01:intron 20.0%
!! GTTTATACCTTTCTAATAAT+TGG + Chr4:46274558-46274577 MsG0480020690.01.T01:intron 20.0%
!! TAAAAAGTGAATTCAAAATC+AGG - Chr4:46274089-46274108 None:intergenic 20.0%
!! TAATGAATTAGGATATAAGA+TGG - Chr4:46275064-46275083 None:intergenic 20.0%
!!! ATTATTAGAAAGGTATAAAC+AGG - Chr4:46274558-46274577 None:intergenic 20.0%
!!! ATTTTCTATGATTCATTTCT+AGG + Chr4:46275604-46275623 MsG0480020690.01.T01:intron 20.0%
!!! TAACATTTTTGTATGTGTTT+TGG + Chr4:46275971-46275990 MsG0480020690.01.T01:three_prime_UTR 20.0%
!!! TCTAAGTTTTACATTTCTAT+AGG + Chr4:46274216-46274235 MsG0480020690.01.T01:intron 20.0%
!!! TTTTCTATGATTCATTTCTA+GGG + Chr4:46275605-46275624 MsG0480020690.01.T01:intron 20.0%
!!! TTTTTTTTTTTTCTGGCTTT+TGG + Chr4:46274655-46274674 MsG0480020690.01.T01:intron 20.0%
! AACCTTTCTTCAAAATTGAA+AGG - Chr4:46274683-46274702 None:intergenic 25.0%
! AAGAGAAGGTTAAAATGAAA+AGG - Chr4:46273825-46273844 None:intergenic 25.0%
! ACAATTCCATTCAAACTAAA+AGG - Chr4:46274840-46274859 None:intergenic 25.0%
! ACAGGAATGTTATAACTTAT+AGG - Chr4:46274540-46274559 None:intergenic 25.0%
! ACTAAAAGGAATTTCTCTAA+AGG - Chr4:46274826-46274845 None:intergenic 25.0%
! ACTTGAATCTTGAATTATTG+AGG + Chr4:46275212-46275231 MsG0480020690.01.T01:intron 25.0%
! AGAAATTATTTGTTTCCAAG+TGG + Chr4:46273151-46273170 MsG0480020690.01.T01:CDS 25.0%
! ATAAGATTTGATTCACGATT+AGG + Chr4:46275308-46275327 MsG0480020690.01.T01:intron 25.0%
! ATTTCTATAGGTAAAAGAAG+AGG + Chr4:46274228-46274247 MsG0480020690.01.T01:intron 25.0%
! TATCATCATAACTCAAAAGA+TGG - Chr4:46275828-46275847 None:intergenic 25.0%
! TCTAAAAGCTAGAAGAAATT+TGG + Chr4:46275478-46275497 MsG0480020690.01.T01:intron 25.0%
! TGTAATGTTGTACTTTATGA+TGG + Chr4:46276032-46276051 MsG0480020690.01.T01:three_prime_UTR 25.0%
! TTGTGTTAACAAAACAACAA+TGG + Chr4:46272832-46272851 MsG0480020690.01.T01:exon 25.0%
! TTTACATTAGTAGGTTACTT+TGG + Chr4:46273261-46273280 MsG0480020690.01.T01:intron 25.0%
!! AAAAAAAAACTTGTTTGGCA+CGG + Chr4:46273761-46273780 MsG0480020690.01.T01:intron 25.0%
!! AATTTTCCAACAAAACTTCA+AGG + Chr4:46272924-46272943 MsG0480020690.01.T01:CDS 25.0%
!! ATTTCTCTAAAGGATATATC+AGG - Chr4:46274816-46274835 None:intergenic 25.0%
!! TCTAATCTTACTTGAGATTT+TGG + Chr4:46273230-46273249 MsG0480020690.01.T01:intron 25.0%
!!! AATGAATCTCTAGTTTTTCT+AGG + Chr4:46276098-46276117 MsG0480020690.01.T01:three_prime_UTR 25.0%
!!! GAAATTCCTTTTAGTTTGAA+TGG + Chr4:46274831-46274850 MsG0480020690.01.T01:intron 25.0%
AAAACAAAACACAGTTTGAG+CGG + Chr4:46272809-46272828 MsG0480020690.01.T01:five_prime_UTR 30.0%
AAGGAAGATATTGTTGATGT+TGG + Chr4:46273088-46273107 MsG0480020690.01.T01:CDS 30.0%
ACCACAAAGGAAAACTTTAT+AGG + Chr4:46275392-46275411 MsG0480020690.01.T01:intron 30.0%
AGATCTTGTTGACATTATCA+AGG + Chr4:46274427-46274446 MsG0480020690.01.T01:CDS 30.0%
ATATGTCTTCAAATACACCT+AGG - Chr4:46274189-46274208 None:intergenic 30.0%
ATGTAAGTAACTAACCTTTC+GGG - Chr4:46272984-46273003 None:intergenic 30.0%
ATTGTTGATGTTGGAAAGAA+AGG + Chr4:46273097-46273116 MsG0480020690.01.T01:CDS 30.0%
CAAATGAATCTACAGAATCA+TGG - Chr4:46275432-46275451 None:intergenic 30.0%
CATATGCTAAATGCACAATT+GGG + Chr4:46275769-46275788 MsG0480020690.01.T01:three_prime_UTR 30.0%
CATCAAACTACAAAAGACAA+TGG - Chr4:46275188-46275207 None:intergenic 30.0%
CATGATTCTGTAGATTCATT+TGG + Chr4:46275430-46275449 MsG0480020690.01.T01:intron 30.0%
CTAAACAGAAACCAAAGATT+AGG - Chr4:46274395-46274414 None:intergenic 30.0%
CTAAAGGATATATCAGGTAT+TGG - Chr4:46274810-46274829 None:intergenic 30.0%
GAAAACTGAATACACATTCA+AGG - Chr4:46276005-46276024 None:intergenic 30.0%
GATGTAAGTAACTAACCTTT+CGG - Chr4:46272985-46273004 None:intergenic 30.0%
GCATTAAGCATATAGCTATT+TGG - Chr4:46274618-46274637 None:intergenic 30.0%
GGTAAAGGAAAACAAATCTT+CGG + Chr4:46274310-46274329 MsG0480020690.01.T01:CDS 30.0%
GTTAACACATAATACCACAA+AGG + Chr4:46275379-46275398 MsG0480020690.01.T01:intron 30.0%
TACCTAAAATTAGTGTAGCT+AGG + Chr4:46275135-46275154 MsG0480020690.01.T01:intron 30.0%
TATCTGATTATCTGCAGTTT+AGG + Chr4:46274110-46274129 MsG0480020690.01.T01:intron 30.0%
TATGTCTTCAAATACACCTA+GGG - Chr4:46274188-46274207 None:intergenic 30.0%
TGTTGTCCCAATTATTAGAA+AGG - Chr4:46274568-46274587 None:intergenic 30.0%
TTGGTTTCTGTTTAGTGTTA+CGG + Chr4:46274400-46274419 MsG0480020690.01.T01:intron 30.0%
! ACCTATAAAGTTTTCCTTTG+TGG - Chr4:46275396-46275415 None:intergenic 30.0%
! CACAGTAGTTTTTGTAACTA+TGG + Chr4:46275874-46275893 MsG0480020690.01.T01:three_prime_UTR 30.0%
! TATGGAAGTTTGAAACCTAT+TGG - Chr4:46275753-46275772 None:intergenic 30.0%
! TTTTGTCAACTTTGTATAGC+TGG + Chr4:46275162-46275181 MsG0480020690.01.T01:intron 30.0%
!! AGCCTTTCAATTTTGAAGAA+AGG + Chr4:46274678-46274697 MsG0480020690.01.T01:intron 30.0%
!! ATTTTAACCTTCTCTTTCCA+GGG + Chr4:46273829-46273848 MsG0480020690.01.T01:intron 30.0%
!! TAAGAACCTTGAAGTTTTGT+TGG - Chr4:46272933-46272952 None:intergenic 30.0%
!!! CTCAAATTTTGGAATCAGTT+GGG + Chr4:46274263-46274282 MsG0480020690.01.T01:CDS 30.0%
!!! TCAAATTTTGGAATCAGTTG+GGG + Chr4:46274264-46274283 MsG0480020690.01.T01:CDS 30.0%
AACTGAATACACATTCAAGG+AGG - Chr4:46276002-46276021 None:intergenic 35.0%
AAGGAAAACAAATCTTCGGA+AGG + Chr4:46274314-46274333 MsG0480020690.01.T01:CDS 35.0%
ACAAAGTGAAACCTCGTAAT+TGG - Chr4:46274352-46274371 None:intergenic 35.0%
ACGCAAGATACTGATAATCA+TGG - Chr4:46274957-46274976 None:intergenic 35.0%
ACTGAATACACATTCAAGGA+GGG - Chr4:46276001-46276020 None:intergenic 35.0%
ATATGTTCTACCCAATTACG+AGG + Chr4:46274338-46274357 MsG0480020690.01.T01:intron 35.0%
ATCAATCGATAAGGATAAGC+AGG - Chr4:46274930-46274949 None:intergenic 35.0%
ATGTCTTCAAATACACCTAG+GGG - Chr4:46274187-46274206 None:intergenic 35.0%
ATGTGCATCAGAAAGATGAA+TGG - Chr4:46274469-46274488 None:intergenic 35.0%
CAAAGTGAAACCTCGTAATT+GGG - Chr4:46274351-46274370 None:intergenic 35.0%
CCAATTGTGCATTTAGCATA+TGG - Chr4:46275771-46275790 None:intergenic 35.0%
CCATATGCTAAATGCACAAT+TGG + Chr4:46275768-46275787 MsG0480020690.01.T01:three_prime_UTR 35.0%
GATAGAGGAAGAAAGAATTG+AGG + Chr4:46273859-46273878 MsG0480020690.01.T01:CDS 35.0%
GTATGATTGTGCCTAATCTT+TGG + Chr4:46274381-46274400 MsG0480020690.01.T01:intron 35.0%
TAAGTTACTAGAAGAGACAC+CGG + Chr4:46273285-46273304 MsG0480020690.01.T01:intron 35.0%
TACAAAGTCGATACACACTA+GGG - Chr4:46275033-46275052 None:intergenic 35.0%
TACACACTAGGGATTCATAT+CGG - Chr4:46275022-46275041 None:intergenic 35.0%
TAGGCACAATCATACATACA+TGG - Chr4:46274376-46274395 None:intergenic 35.0%
TGAATCTACAGAATCATGGA+AGG - Chr4:46275428-46275447 None:intergenic 35.0%
TGGTATTCGTGTTTGTGTTA+TGG + Chr4:46273709-46273728 MsG0480020690.01.T01:intron 35.0%
! AGCTTATAGCTTTACATGCA+AGG - Chr4:46274049-46274068 None:intergenic 35.0%
! CACACAATTGCATAAGTTGA+AGG + Chr4:46275795-46275814 MsG0480020690.01.T01:three_prime_UTR 35.0%
! TCTATGATTCATTTCTAGGG+AGG + Chr4:46275608-46275627 MsG0480020690.01.T01:intron 35.0%
! TGCCTAGCTACACTAATTTT+AGG - Chr4:46275140-46275159 None:intergenic 35.0%
! TGGACATTTTCTCAGATTTG+TGG + Chr4:46275932-46275951 MsG0480020690.01.T01:three_prime_UTR 35.0%
! TTAGTGAAGTTTTTACCCCT+AGG + Chr4:46274169-46274188 MsG0480020690.01.T01:intron 35.0%
!! ACTGCAACTTGCTCAAATTT+TGG + Chr4:46274252-46274271 MsG0480020690.01.T01:CDS 35.0%
!! AGAAGAAGTGTTCAAGTTAG+AGG - Chr4:46272903-46272922 None:intergenic 35.0%
!! CATTTTAACCTTCTCTTTCC+AGG + Chr4:46273828-46273847 MsG0480020690.01.T01:intron 35.0%
!! TAAGAGTGTTAGAGTTCAAG+AGG + Chr4:46273984-46274003 MsG0480020690.01.T01:intron 35.0%
!!! GCTCAAATTTTGGAATCAGT+TGG + Chr4:46274262-46274281 MsG0480020690.01.T01:CDS 35.0%
AATTGAGGCTGAGAAACAAC+GGG + Chr4:46273874-46273893 MsG0480020690.01.T01:CDS 40.0%
ACACACTAGGGATTCATATC+GGG - Chr4:46275021-46275040 None:intergenic 40.0%
AGACGACGAGGAAATCTTAA+TGG + Chr4:46275912-46275931 MsG0480020690.01.T01:three_prime_UTR 40.0%
AGAGTTAAAACTTCACCCTG+AGG + Chr4:46275686-46275705 MsG0480020690.01.T01:CDS 40.0%
AGATCAAAGGTGAATCCACT+CGG - Chr4:46273420-46273439 None:intergenic 40.0%
AGGTGAACTTCTTGATGTCA+AGG + Chr4:46273117-46273136 MsG0480020690.01.T01:CDS 40.0%
CTCAGATTTGTGGACATAGT+TGG + Chr4:46275942-46275961 MsG0480020690.01.T01:three_prime_UTR 40.0%
CTGAATACACATTCAAGGAG+GGG - Chr4:46276000-46276019 None:intergenic 40.0%
GAAGACAAAGAAAACCCGAA+AGG + Chr4:46272967-46272986 MsG0480020690.01.T01:CDS 40.0%
GAATTGAGGCTGAGAAACAA+CGG + Chr4:46273873-46273892 MsG0480020690.01.T01:CDS 40.0%
GTACAAAGTCGATACACACT+AGG - Chr4:46275034-46275053 None:intergenic 40.0%
GTGTTAGAGTTCAAGAGGAA+AGG + Chr4:46273989-46274008 MsG0480020690.01.T01:intron 40.0%
TCACTTTAGCTGTAACCTCA+GGG - Chr4:46275704-46275723 None:intergenic 40.0%
TCCAAAGACGATCAATGCAA+GGG - Chr4:46273802-46273821 None:intergenic 40.0%
TGTTGAACTTCCTGAGATCA+GGG + Chr4:46275644-46275663 MsG0480020690.01.T01:CDS 40.0%
TTAGCTAACTGAGCACCAAT+AGG + Chr4:46275735-46275754 MsG0480020690.01.T01:exon 40.0%
TTATCAAGGCACAGCTTCAA+AGG + Chr4:46274441-46274460 MsG0480020690.01.T01:CDS 40.0%
TTCAATTCCCTGGAAAGAGA+AGG - Chr4:46273839-46273858 None:intergenic 40.0%
TTCACTTTAGCTGTAACCTC+AGG - Chr4:46275705-46275724 None:intergenic 40.0%
TTCCAGGGAATTGAAGATAG+AGG + Chr4:46273844-46273863 MsG0480020690.01.T01:intron 40.0%
TTCCTCTATCTTCAATTCCC+TGG - Chr4:46273849-46273868 None:intergenic 40.0%
TTGTTGAACTTCCTGAGATC+AGG + Chr4:46275643-46275662 MsG0480020690.01.T01:CDS 40.0%
! ACACCTTCAATCTGAAGTGT+TGG - Chr4:46273583-46273602 None:intergenic 40.0%
! ATGATTCATTTCTAGGGAGG+TGG + Chr4:46275611-46275630 MsG0480020690.01.T01:intron 40.0%
! CTTCAGATTGAAGGTGTGTT+TGG + Chr4:46273586-46273605 MsG0480020690.01.T01:intron 40.0%
! GTTTTTGTAACTATGGCCGA+TGG + Chr4:46275881-46275900 MsG0480020690.01.T01:three_prime_UTR 40.0%
! TCACCTTTGATCTGAAGTGT+CGG + Chr4:46273427-46273446 MsG0480020690.01.T01:intron 40.0%
!! CATGGTGCTATCAATCGATA+AGG - Chr4:46274939-46274958 None:intergenic 40.0%
!! TAGATCGTTTTGTTCACGAC+TGG + Chr4:46275335-46275354 MsG0480020690.01.T01:intron 40.0%
ACTAGGGATTCATATCGGGT+GGG - Chr4:46275017-46275036 None:intergenic 45.0%
AGACGTGTCAGTGTTGTGTT+TGG + Chr4:46273689-46273708 MsG0480020690.01.T01:intron 45.0%
GAACTTCTTGATGTCAAGGC+TGG + Chr4:46273121-46273140 MsG0480020690.01.T01:CDS 45.0%
GCACCAACACTTCAGATTGA+AGG + Chr4:46273577-46273596 MsG0480020690.01.T01:intron 45.0%
GCTTTCAAGGTGAAGCGTAA+AGG + Chr4:46274286-46274305 MsG0480020690.01.T01:CDS 45.0%
GTCCAAAGACGATCAATGCA+AGG - Chr4:46273803-46273822 None:intergenic 45.0%
GTGAAGCGTAAAGGTGGTAA+AGG + Chr4:46274295-46274314 MsG0480020690.01.T01:CDS 45.0%
TTCAAGGTGAAGCGTAAAGG+TGG + Chr4:46274289-46274308 MsG0480020690.01.T01:CDS 45.0%
! AGGTTACTAGCAGCACTGAA+GGG + Chr4:46273458-46273477 MsG0480020690.01.T01:intron 45.0%
! GAGGTGAAAGTGTGTTGCAA+TGG - Chr4:46272884-46272903 None:intergenic 45.0%
! TAGGTTACTAGCAGCACTGA+AGG + Chr4:46273457-46273476 MsG0480020690.01.T01:intron 45.0%
! TCCCTTGCATTGATCGTCTT+TGG + Chr4:46273798-46273817 MsG0480020690.01.T01:intron 45.0%
!!! TATTTTTTTTTTTTTTTTTC+TGG + Chr4:46274648-46274667 MsG0480020690.01.T01:intron 5.0%
ACACGTGTCAGTGTTGTGTC+CGG - Chr4:46273307-46273326 None:intergenic 50.0%
CACTAGGGATTCATATCGGG+TGG - Chr4:46275018-46275037 None:intergenic 50.0%
CTTCCTGAGATCAGGGAAAC+AGG + Chr4:46275651-46275670 MsG0480020690.01.T01:CDS 50.0%
GCAATCTGAGCTTTGCCACT+TGG - Chr4:46273169-46273188 None:intergenic 50.0%
GGAATCAGTTGGGGCTTTCA+AGG + Chr4:46274273-46274292 MsG0480020690.01.T01:CDS 50.0%
GGTCTCTGACATCGAGACAT+GGG + Chr4:46273624-46273643 MsG0480020690.01.T01:intron 50.0%
GTTTGGTATCCGACACGTGT+TGG + Chr4:46273603-46273622 MsG0480020690.01.T01:intron 50.0%
TCTCCTGTTTCCCTGATCTC+AGG - Chr4:46275657-46275676 None:intergenic 50.0%
TGGTCTCTGACATCGAGACA+TGG + Chr4:46273623-46273642 MsG0480020690.01.T01:intron 50.0%
TGTCAGAGACCAACACGTGT+CGG - Chr4:46273615-46273634 None:intergenic 50.0%
! CTAGCAGCACTGAAGGGTAT+AGG + Chr4:46273464-46273483 MsG0480020690.01.T01:intron 50.0%
! GCACCGACACTTCAGATCAA+AGG - Chr4:46273433-46273452 None:intergenic 50.0%
!! CTGAAGTGTCGGTGCTACAT+AGG + Chr4:46273438-46273457 MsG0480020690.01.T01:intron 50.0%
! GTGTTGTGTCGTTGACCGAG+TGG + Chr4:46273402-46273421 MsG0480020690.01.T01:intron 55.0%
ATGGCTCAGACGAGACGACG+AGG + Chr4:46275900-46275919 MsG0480020690.01.T01:three_prime_UTR 60.0%
CGTCGTCTCGTCTGAGCCAT+CGG - Chr4:46275900-46275919 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr4 gene 46272778 46276119 46272778 ID=MsG0480020690.01;Name=MsG0480020690.01
Chr4 mRNA 46272778 46276119 46272778 ID=MsG0480020690.01.T01;Parent=MsG0480020690.01;Name=MsG0480020690.01.T01;_AED=0.46;_eAED=0.46;_QI=73|1|1|1|0.8|0.83|6|373|192
Chr4 exon 46272778 46272988 46272778 ID=MsG0480020690.01.T01:exon:7887;Parent=MsG0480020690.01.T01
Chr4 exon 46273079 46273206 46273079 ID=MsG0480020690.01.T01:exon:7888;Parent=MsG0480020690.01.T01
Chr4 exon 46273850 46273895 46273850 ID=MsG0480020690.01.T01:exon:7889;Parent=MsG0480020690.01.T01
Chr4 exon 46274238 46274335 46274238 ID=MsG0480020690.01.T01:exon:7890;Parent=MsG0480020690.01.T01
Chr4 exon 46274415 46274462 46274415 ID=MsG0480020690.01.T01:exon:7891;Parent=MsG0480020690.01.T01
Chr4 exon 46275626 46276119 46275626 ID=MsG0480020690.01.T01:exon:7892;Parent=MsG0480020690.01.T01
Chr4 five_prime_UTR 46272778 46272850 46272778 ID=MsG0480020690.01.T01:five_prime_utr;Parent=MsG0480020690.01.T01
Chr4 CDS 46272851 46272988 46272851 ID=MsG0480020690.01.T01:cds;Parent=MsG0480020690.01.T01
Chr4 CDS 46273079 46273206 46273079 ID=MsG0480020690.01.T01:cds;Parent=MsG0480020690.01.T01
Chr4 CDS 46273850 46273895 46273850 ID=MsG0480020690.01.T01:cds;Parent=MsG0480020690.01.T01
Chr4 CDS 46274238 46274335 46274238 ID=MsG0480020690.01.T01:cds;Parent=MsG0480020690.01.T01
Chr4 CDS 46274415 46274462 46274415 ID=MsG0480020690.01.T01:cds;Parent=MsG0480020690.01.T01
Chr4 CDS 46275626 46275746 46275626 ID=MsG0480020690.01.T01:cds;Parent=MsG0480020690.01.T01
Chr4 three_prime_UTR 46275747 46276119 46275747 ID=MsG0480020690.01.T01:three_prime_utr;Parent=MsG0480020690.01.T01
Gene Sequence

>MsG0480020690.01.T01

ATGGCATCATCATCAACATTATCTTCACTTCCATTGCAACACACTTTCACCTCTAACTTGAACACTTCTTCTCAATTTTCCAACAAAACTTCAAGGTTCTTAATTTTCGCTCAAAAGAAGACAAAGAAAACCCGAAAGATTATATTGAAGGAAGATATTGTTGATGTTGGAAAGAAAGGTGAACTTCTTGATGTCAAGGCTGGATTTTTCAGAAATTATTTGTTTCCAAGTGGCAAAGCTCAGATTGCAACTGCTGATTTGCTTAAGGAATTGAAGATAGAGGAAGAAAGAATTGAGGCTGAGAAACAACGGGTAAAAGAAGAGGCACTGCAACTTGCTCAAATTTTGGAATCAGTTGGGGCTTTCAAGGTGAAGCGTAAAGGTGGTAAAGGAAAACAAATCTTCGGAAGTGTTACGGCTCAAGATCTTGTTGACATTATCAAGGCACAGCTTCAAAGGGAGGTGGACAAGAGAATTGTTGAACTTCCTGAGATCAGGGAAACAGGAGAATATATTGCAGAGTTAAAACTTCACCCTGAGGTTACAGCTAAAGTGAAAGTGAATGTTTTAGCTAACTGA

Protein sequence

>MsG0480020690.01.T01

MASSSTLSSLPLQHTFTSNLNTSSQFSNKTSRFLIFAQKKTKKTRKIILKEDIVDVGKKGELLDVKAGFFRNYLFPSGKAQIATADLLKELKIEEERIEAEKQRVKEEALQLAQILESVGAFKVKRKGGKGKQIFGSVTAQDLVDIIKAQLQREVDKRIVELPEIRETGEYIAELKLHPEVTAKVKVNVLAN*