AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480023314.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480023314.01.T01 MTR_8g090185 94.771 153 8 0 1 153 1 153 4.61e-89 258
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480023314.01.T01 AT5G65220 60.510 157 57 2 1 152 1 157 3.24e-56 174

Find 48 sgRNAs with CRISPR-Local

Find 245 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATTCACTGCCTTCAAATT+AGG 0.189849 4:-83646884 MsG0480023314.01.T01:three_prime_UTR
CTCCGTCTTTAGTGAAGCTT+CGG 0.316925 4:-83647152 MsG0480023314.01.T01:CDS
AGGATGAAGTGAAGTAAGAT+AGG 0.359503 4:-83649979 None:intergenic
CGAAGAGGTTGTTGACCTTA+AGG 0.368840 4:-83649663 MsG0480023314.01.T01:CDS
AGAGAGATCGAGGAGGGTAT+TGG 0.373075 4:-83647234 MsG0480023314.01.T01:CDS
CCTATGTTCTTCCTGTCATA+AGG 0.377714 4:-83646963 MsG0480023314.01.T01:three_prime_UTR
GAAGAGGTTGTTGACCTTAA+GGG 0.407443 4:-83649662 MsG0480023314.01.T01:CDS
AACCTCTTCGTTGATTTGTT+CGG 0.413592 4:+83649676 None:intergenic
TCCGTCTTTAGTGAAGCTTC+GGG 0.421679 4:-83647151 MsG0480023314.01.T01:CDS
GAAGAGGTGTGTTTCGTCGC+TGG 0.429164 4:+83649761 None:intergenic
TAACCATGTCTCTATTCTTA+CGG 0.436101 4:+83646916 None:intergenic
AAAATGATTACCTAATTTGA+AGG 0.439015 4:+83646874 None:intergenic
CAATTCAAAACCTCCTTCAA+TGG 0.450472 4:-83649818 MsG0480023314.01.T01:CDS
GCTGGAATTGTGCACGTGTT+TGG 0.452104 4:+83649779 None:intergenic
AGAAGCCGCTGAAGCTGAAA+AGG 0.454847 4:-83647112 MsG0480023314.01.T01:CDS
GCTGAAAAGGCTGCATGAGC+TGG 0.463787 4:-83647099 MsG0480023314.01.T01:exon
TCGAGGAGGGTATTGGTAAG+AGG 0.464624 4:-83647227 MsG0480023314.01.T01:CDS
CTCTTCGTTGATTTGTTCGG+TGG 0.475609 4:+83649679 None:intergenic
TTTAGTGAAGCTTCGGGAGG+AGG 0.477310 4:-83647145 MsG0480023314.01.T01:CDS
TTCGGTCTCAGTTGTGATGA+TGG 0.483279 4:-83649741 MsG0480023314.01.T01:CDS
GCATGAGCAACTCTCCCTTA+AGG 0.500570 4:+83649648 None:intergenic
AAGTGAAGTAAGATAGGGTG+TGG 0.502314 4:-83649973 None:intergenic
ACGCATGCGACGGAAATCAC+TGG 0.508419 4:+83649589 None:intergenic
AGCGACGAAACACACCTCTT+CGG 0.509558 4:-83649759 MsG0480023314.01.T01:CDS
GAAAGTGTTGAAGAAGAAGA+AGG 0.513832 4:+83649860 None:intergenic
AGAAGAAGAAGGTGAAGTAA+CGG 0.515793 4:+83649871 None:intergenic
GGATGAAGTGAAGTAAGATA+GGG 0.523185 4:-83649978 None:intergenic
CATTACGAGCGGATTTCTGA+AGG 0.525516 4:+83649621 None:intergenic
TCGCTTGCTTACTGTAAAGC+GGG 0.534202 4:-83647259 MsG0480023314.01.T01:CDS
ACGTAGACGAATGCCATTGA+AGG 0.534298 4:+83649805 None:intergenic
TTTCCGTCGCATGCGTAAGA+CGG 0.562303 4:-83649582 MsG0480023314.01.T01:intron
CTCGCTTGCTTACTGTAAAG+CGG 0.564676 4:-83647260 MsG0480023314.01.T01:CDS
TCCCGAAGCTTCACTAAAGA+CGG 0.568374 4:+83647150 None:intergenic
AGCTTCACTAAAGACGGAGG+TGG 0.580530 4:+83647156 None:intergenic
CCTTATGACAGGAAGAACAT+AGG 0.601321 4:+83646963 None:intergenic
TAGACGAATGCCATTGAAGG+AGG 0.601615 4:+83649808 None:intergenic
GTCTTTAGTGAAGCTTCGGG+AGG 0.606896 4:-83647148 MsG0480023314.01.T01:CDS
CGGGAAAGAGAGATCGAGGA+GGG 0.618037 4:-83647240 MsG0480023314.01.T01:CDS
CACCGAACAAATCAACGAAG+AGG 0.638523 4:-83649678 MsG0480023314.01.T01:CDS
AAAGCGGGAAAGAGAGATCG+AGG 0.640382 4:-83647244 MsG0480023314.01.T01:CDS
AGATAAAACATAAGAGAGCG+CGG 0.644926 4:-83649914 MsG0480023314.01.T01:five_prime_UTR
ATACCGTCTTACGCATGCGA+CGG 0.651580 4:+83649579 None:intergenic
GGACTTAAACTCATTACGAG+CGG 0.659914 4:+83649610 None:intergenic
CATCACAACTGAGACCGAAG+AGG 0.669119 4:+83649745 None:intergenic
GCGGGAAAGAGAGATCGAGG+AGG 0.693334 4:-83647241 MsG0480023314.01.T01:CDS
CGAAGCTTCACTAAAGACGG+AGG 0.698716 4:+83647153 None:intergenic
TAACCGTAAGAATAGAGACA+TGG 0.704669 4:-83646919 MsG0480023314.01.T01:three_prime_UTR
AAGAAGGTGAAGTAACGGAG+AGG 0.716426 4:+83649876 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAAAACTAAAAATAAATG+GGG + Chr4:83649421-83649440 None:intergenic 10.0%
!! AAAAAAGCAATATAATGAAA+AGG + Chr4:83648638-83648657 None:intergenic 15.0%
!! AAACGGAAAAAAAAAAAATT+AGG - Chr4:83648910-83648929 MsG0480023314.01.T01:intron 15.0%
!! TTAAAACTAAAAATAAATGG+GGG + Chr4:83649420-83649439 None:intergenic 15.0%
!!! AATTTTTTTTTTTTCCGTTT+CGG + Chr4:83648910-83648929 None:intergenic 15.0%
!!! ATCTGAAGTTATTATTATTA+GGG + Chr4:83649448-83649467 None:intergenic 15.0%
!!! ATTTGCTTAATTAAATTTTG+AGG - Chr4:83647310-83647329 MsG0480023314.01.T01:intron 15.0%
!! AAAATGATTACCTAATTTGA+AGG + Chr4:83649932-83649951 None:intergenic 20.0%
!! ACAATAAAATTCAATTGTTG+TGG - Chr4:83648717-83648736 MsG0480023314.01.T01:intron 20.0%
!! ACAATATTCAAAATTGTCAA+GGG - Chr4:83647673-83647692 MsG0480023314.01.T01:intron 20.0%
!! ATAATCTAATCCAATGTAAA+CGG - Chr4:83648301-83648320 MsG0480023314.01.T01:intron 20.0%
!! ATCAGAACTGAAATTTAAAT+TGG - Chr4:83648799-83648818 MsG0480023314.01.T01:intron 20.0%
!!! ACAACAATTGAATTTTATTG+TGG + Chr4:83648718-83648737 None:intergenic 20.0%
!!! AGTCATTGTTTTTAATGTTT+TGG - Chr4:83649774-83649793 MsG0480023314.01.T01:CDS 20.0%
!!! CATCTGAAGTTATTATTATT+AGG + Chr4:83649449-83649468 None:intergenic 20.0%
!!! TATCTTTTACTTTAGTTGTT+TGG - Chr4:83648474-83648493 MsG0480023314.01.T01:intron 20.0%
!!! TCAATTCAATTTTTATTGGT+GGG + Chr4:83649257-83649276 None:intergenic 20.0%
!!! TCTTAAGTTTGAATCTTTTA+TGG - Chr4:83648167-83648186 MsG0480023314.01.T01:intron 20.0%
! AAAAATTGAATTGAGGAGAA+TGG - Chr4:83649263-83649282 MsG0480023314.01.T01:intron 25.0%
! AAAATTGAATTGAGGAGAAT+GGG - Chr4:83649264-83649283 MsG0480023314.01.T01:intron 25.0%
! AAACTTAGGGTAAAATTTGA+AGG - Chr4:83647798-83647817 MsG0480023314.01.T01:intron 25.0%
! AAATGCACACAATAGAAAAA+GGG - Chr4:83649363-83649382 MsG0480023314.01.T01:intron 25.0%
! AACATCCATGAAAATAGAAA+AGG + Chr4:83648743-83648762 None:intergenic 25.0%
! AACTCTGATAAAATGATGAT+GGG + Chr4:83649229-83649248 None:intergenic 25.0%
! AAGAAGAAAGAAAACTGAAA+AGG - Chr4:83648386-83648405 MsG0480023314.01.T01:intron 25.0%
! ACACCAAAAATAATGCAAAT+GGG + Chr4:83647768-83647787 None:intergenic 25.0%
! ATACAAATGAGTGTAAGAAT+AGG + Chr4:83648552-83648571 None:intergenic 25.0%
! CAATATTCAAAATTGTCAAG+GGG - Chr4:83647674-83647693 MsG0480023314.01.T01:intron 25.0%
! CACAATATTCAAAATTGTCA+AGG - Chr4:83647672-83647691 MsG0480023314.01.T01:intron 25.0%
! CACCAATAAAAATTGAATTG+AGG - Chr4:83649256-83649275 MsG0480023314.01.T01:intron 25.0%
! CTCTACTAATGTATTAAGAT+TGG + Chr4:83647380-83647399 None:intergenic 25.0%
! CTTAATACATTAGTAGAGTT+GGG - Chr4:83647382-83647401 MsG0480023314.01.T01:intron 25.0%
! GAAATATTGCTATGTTAGAA+TGG - Chr4:83647702-83647721 MsG0480023314.01.T01:intron 25.0%
! GAAATGAACATTGAAATGAA+AGG - Chr4:83647849-83647868 MsG0480023314.01.T01:intron 25.0%
! TCTTAATACATTAGTAGAGT+TGG - Chr4:83647381-83647400 MsG0480023314.01.T01:intron 25.0%
! TGTCTATTATACCAAACTTA+GGG - Chr4:83647785-83647804 MsG0480023314.01.T01:intron 25.0%
! TGTGAAATTAGGAATGAATA+GGG - Chr4:83647417-83647436 MsG0480023314.01.T01:intron 25.0%
! TTAATACATTAGTAGAGTTG+GGG - Chr4:83647383-83647402 MsG0480023314.01.T01:intron 25.0%
! TTGTAATTGTCATTGTTCTA+TGG - Chr4:83647503-83647522 MsG0480023314.01.T01:intron 25.0%
!! CTCAATTCAATTTTTATTGG+TGG + Chr4:83649258-83649277 None:intergenic 25.0%
!! CTCCTCAATTCAATTTTTAT+TGG + Chr4:83649261-83649280 None:intergenic 25.0%
!! TATTAGCACTTGTTAACAAA+TGG + Chr4:83648250-83648269 None:intergenic 25.0%
!! TTCAAATTTTACCCTAAGTT+TGG + Chr4:83647799-83647818 None:intergenic 25.0%
!! TTTAGAATGTTTAGATTCCA+TGG - Chr4:83649330-83649349 MsG0480023314.01.T01:intron 25.0%
!! TTTCAGTTTTCTTTCTTCTT+TGG + Chr4:83648386-83648405 None:intergenic 25.0%
!!! CATTGTTTTTAATGTTTTGG+TGG - Chr4:83649777-83649796 MsG0480023314.01.T01:CDS 25.0%
!!! GTTTTGAATTGTAATGGTTT+TGG + Chr4:83646976-83646995 None:intergenic 25.0%
AAACTAAAAATAAATGGGGG+TGG + Chr4:83649417-83649436 None:intergenic 30.0%
AAAGATTCAAACTTAAGACC+CGG + Chr4:83648165-83648184 None:intergenic 30.0%
AAATAACTGAACTGAAAACC+AGG - Chr4:83648324-83648343 MsG0480023314.01.T01:intron 30.0%
AATGCACACAATAGAAAAAG+GGG - Chr4:83649364-83649383 MsG0480023314.01.T01:intron 30.0%
ACATAGATTAAATCCATTGC+CGG - Chr4:83648143-83648162 MsG0480023314.01.T01:intron 30.0%
ACTGAAACAAAGAATAAAGG+TGG + Chr4:83648615-83648634 None:intergenic 30.0%
AGGACTGAAACAAAGAATAA+AGG + Chr4:83648618-83648637 None:intergenic 30.0%
AGGAGATTAATCTATTATGC+TGG + Chr4:83649093-83649112 None:intergenic 30.0%
ATAGTAAAGCAAACTGAAGT+AGG + Chr4:83649152-83649171 None:intergenic 30.0%
ATGTTTAGATTCCATGGTAA+AGG - Chr4:83649336-83649355 MsG0480023314.01.T01:intron 30.0%
ATTGAAATTGAACTGAAACC+AGG + Chr4:83648082-83648101 None:intergenic 30.0%
ATTTCAATCAACCAATACGA+TGG - Chr4:83648094-83648113 MsG0480023314.01.T01:intron 30.0%
CCAGAAAGCTTGATAAAAAA+TGG - Chr4:83649603-83649622 MsG0480023314.01.T01:CDS 30.0%
CTGTGAAATTAGGAATGAAT+AGG - Chr4:83647416-83647435 MsG0480023314.01.T01:intron 30.0%
GAAATGCACACAATAGAAAA+AGG - Chr4:83649362-83649381 MsG0480023314.01.T01:intron 30.0%
GAACTCTGATAAAATGATGA+TGG + Chr4:83649230-83649249 None:intergenic 30.0%
GACACCAAAAATAATGCAAA+TGG + Chr4:83647769-83647788 None:intergenic 30.0%
GACATAAAAAACCTTATGAC+AGG + Chr4:83649854-83649873 None:intergenic 30.0%
GTGTCTATTATACCAAACTT+AGG - Chr4:83647784-83647803 MsG0480023314.01.T01:intron 30.0%
TAACCATGTCTCTATTCTTA+CGG + Chr4:83649890-83649909 None:intergenic 30.0%
TAATACATTAGTAGAGTTGG+GGG - Chr4:83647384-83647403 MsG0480023314.01.T01:intron 30.0%
TAGTTGTTACTCATGTATTG+CGG - Chr4:83647934-83647953 MsG0480023314.01.T01:intron 30.0%
TTGCTATGTTAGAATGGAAA+TGG - Chr4:83647708-83647727 MsG0480023314.01.T01:intron 30.0%
! AAACTGAAAAGGTCAAGTTT+TGG - Chr4:83648397-83648416 MsG0480023314.01.T01:intron 30.0%
! CATCCCATTTGCATTATTTT+TGG - Chr4:83647762-83647781 MsG0480023314.01.T01:intron 30.0%
! TCAGTTATTTCCGTTTACAT+TGG + Chr4:83648314-83648333 None:intergenic 30.0%
! TGAGTAAATCGTGATTTTGA+TGG + Chr4:83648663-83648682 None:intergenic 30.0%
! TTTTATTGTCCTCTGTTTTG+GGG + Chr4:83648360-83648379 None:intergenic 30.0%
!! GTTTTATTGTCCTCTGTTTT+GGG + Chr4:83648361-83648380 None:intergenic 30.0%
!!! AAGGAGGTTTTGAATTGTAA+TGG + Chr4:83646982-83647001 None:intergenic 30.0%
!!! ACTTTTCAGGTATGGTATTT+CGG + Chr4:83648008-83648027 None:intergenic 30.0%
!!! AGTCTTTGGTTTTGTGTATT+TGG + Chr4:83647601-83647620 None:intergenic 30.0%
!!! AGTTTTATTGTCCTCTGTTT+TGG + Chr4:83648362-83648381 None:intergenic 30.0%
!!! CCATTTTTTATCAAGCTTTC+TGG + Chr4:83649606-83649625 None:intergenic 30.0%
!!! TTGTAATGGTTTTGGAAGAA+AGG + Chr4:83646968-83646987 None:intergenic 30.0%
AAAACACCATACCTGAAATG+GGG - Chr4:83647976-83647995 MsG0480023314.01.T01:intron 35.0%
AAATCACTTGAGCATTTGTG+GGG + Chr4:83648965-83648984 None:intergenic 35.0%
AACATTGAAATGAAAGGCCA+AGG - Chr4:83647855-83647874 MsG0480023314.01.T01:intron 35.0%
AATGGAGACGAACATTAATG+TGG + Chr4:83649014-83649033 None:intergenic 35.0%
ACAAAACCAAAGACTCACTA+GGG - Chr4:83647606-83647625 MsG0480023314.01.T01:intron 35.0%
ACACTTGTCTACTGTTATCT+GGG + Chr4:83648878-83648897 None:intergenic 35.0%
ACATTAATGTTCGTCTCCAT+TGG - Chr4:83649013-83649032 MsG0480023314.01.T01:intron 35.0%
ACATTGAAATGAAAGGCCAA+GGG - Chr4:83647856-83647875 MsG0480023314.01.T01:intron 35.0%
AGAAAACACCATACCTGAAA+TGG - Chr4:83647974-83647993 MsG0480023314.01.T01:intron 35.0%
AGAAGAAGAAGGTGAAGTAA+CGG + Chr4:83646935-83646954 None:intergenic 35.0%
AGATAAAACATAAGAGAGCG+CGG - Chr4:83646889-83646908 MsG0480023314.01.T01:three_prime_UTR 35.0%
AGATAACAGTAGACAAGTGT+AGG - Chr4:83648878-83648897 MsG0480023314.01.T01:intron 35.0%
ATGGAGACGAACATTAATGT+GGG + Chr4:83649013-83649032 None:intergenic 35.0%
CAATTCAAAACCTCCTTCAA+TGG - Chr4:83646985-83647004 MsG0480023314.01.T01:three_prime_UTR 35.0%
CAATTCACTGCCTTCAAATT+AGG - Chr4:83649919-83649938 MsG0480023314.01.T01:five_prime_UTR 35.0%
CATAGATTAAATCCATTGCC+GGG - Chr4:83648144-83648163 MsG0480023314.01.T01:intron 35.0%
CTAATAGCTAACATAGCTTG+GGG - Chr4:83648264-83648283 MsG0480023314.01.T01:intron 35.0%
GAAAACACCATACCTGAAAT+GGG - Chr4:83647975-83647994 MsG0480023314.01.T01:intron 35.0%
GAAATACCATACCTGAAAAG+TGG - Chr4:83648007-83648026 MsG0480023314.01.T01:intron 35.0%
GAAATCACTTGAGCATTTGT+GGG + Chr4:83648966-83648985 None:intergenic 35.0%
GAATGAGAGTCTGTGAAATT+AGG - Chr4:83647406-83647425 MsG0480023314.01.T01:intron 35.0%
GATAACAGTAGACAAGTGTA+GGG - Chr4:83648879-83648898 MsG0480023314.01.T01:intron 35.0%
GCTAATAGCTAACATAGCTT+GGG - Chr4:83648263-83648282 MsG0480023314.01.T01:intron 35.0%
GGTTATGTTAGAGAAACAAC+TGG - Chr4:83647524-83647543 MsG0480023314.01.T01:intron 35.0%
GTAATCATTCACCCAAAAGA+AGG + Chr4:83649502-83649521 None:intergenic 35.0%
GTGTGTAATATGTAAGTCAC+AGG + Chr4:83647655-83647674 None:intergenic 35.0%
GTTAACGAATTTGAATCCCT+TGG + Chr4:83647875-83647894 None:intergenic 35.0%
TAACCGTAAGAATAGAGACA+TGG - Chr4:83649884-83649903 MsG0480023314.01.T01:CDS 35.0%
TACACTTGTCTACTGTTATC+TGG + Chr4:83648879-83648898 None:intergenic 35.0%
TAGAAAGCTTTACCAACAAG+CGG - Chr4:83649473-83649492 MsG0480023314.01.T01:intron 35.0%
TAGAATGGAAATGGAGAGAA+AGG - Chr4:83647717-83647736 MsG0480023314.01.T01:intron 35.0%
TGCAAATGGGATGTAGATAT+AGG + Chr4:83647755-83647774 None:intergenic 35.0%
TGCATTTCTTTCCTTTACCA+TGG + Chr4:83649350-83649369 None:intergenic 35.0%
TGCTAATAGCTAACATAGCT+TGG - Chr4:83648262-83648281 MsG0480023314.01.T01:intron 35.0%
TGTGTTGCATAAAGTGGAAA+AGG + Chr4:83649182-83649201 None:intergenic 35.0%
! GACCTAAACTCTAAAGAATG+AGG + Chr4:83648201-83648220 None:intergenic 35.0%
! TGCAGCTAGTTTATGAAGAA+AGG + Chr4:83648453-83648472 None:intergenic 35.0%
! TGTGGCCTTTTCTATTTTCA+TGG - Chr4:83648735-83648754 MsG0480023314.01.T01:intron 35.0%
!! AACCTCTTCGTTGATTTGTT+CGG + Chr4:83647130-83647149 None:intergenic 35.0%
!! AAGGCATCAGGATTTTTATC+TGG - Chr4:83647817-83647836 MsG0480023314.01.T01:intron 35.0%
!! ATTTCAGGTATGGTGTTTTC+TGG + Chr4:83647975-83647994 None:intergenic 35.0%
!! CTTTAGAGTTTAGGTCTTTG+AGG - Chr4:83648205-83648224 MsG0480023314.01.T01:intron 35.0%
!! GAAAGTGTTGAAGAAGAAGA+AGG + Chr4:83646946-83646965 None:intergenic 35.0%
!! GTCCTCATTCTTTAGAGTTT+AGG - Chr4:83648196-83648215 MsG0480023314.01.T01:intron 35.0%
!!! CTTTTCAGGTATGGTATTTC+GGG + Chr4:83648007-83648026 None:intergenic 35.0%
AAAAGAAGGATACCGCTTGT+TGG + Chr4:83649488-83649507 None:intergenic 40.0%
AAACAGAACACGTGGCAATA+GGG + Chr4:83649062-83649081 None:intergenic 40.0%
AAAGAAGCAGTGCATTAGCT+AGG - Chr4:83649306-83649325 MsG0480023314.01.T01:intron 40.0%
AGACGAACATTAATGTGGGA+AGG + Chr4:83649009-83649028 None:intergenic 40.0%
AGTGCAAGAGACTTGTGTTT+AGG - Chr4:83647565-83647584 MsG0480023314.01.T01:intron 40.0%
ATACCTGAAAAGTGGAGAGT+GGG - Chr4:83648015-83648034 MsG0480023314.01.T01:intron 40.0%
ATCAGTTGCATGAGTGGAAA+AGG + Chr4:83648771-83648790 None:intergenic 40.0%
CACAAAACCAAAGACTCACT+AGG - Chr4:83647605-83647624 MsG0480023314.01.T01:intron 40.0%
CAGAATATCAGTTGCATGAG+TGG + Chr4:83648777-83648796 None:intergenic 40.0%
CCTATGTTCTTCCTGTCATA+AGG - Chr4:83649840-83649859 MsG0480023314.01.T01:CDS 40.0%
CCTTATGACAGGAAGAACAT+AGG + Chr4:83649843-83649862 None:intergenic 40.0%
GAAGAGGTTGTTGACCTTAA+GGG - Chr4:83647141-83647160 MsG0480023314.01.T01:CDS 40.0%
GAATCACAATATCACCAAGC+TGG - Chr4:83649390-83649409 MsG0480023314.01.T01:intron 40.0%
GGAAATCACTTGAGCATTTG+TGG + Chr4:83648967-83648986 None:intergenic 40.0%
GGACTTAAACTCATTACGAG+CGG + Chr4:83647196-83647215 None:intergenic 40.0%
GTGCAAGAGACTTGTGTTTA+GGG - Chr4:83647566-83647585 MsG0480023314.01.T01:intron 40.0%
TGGAAATGGAGAGAAAGGAA+AGG - Chr4:83647722-83647741 MsG0480023314.01.T01:intron 40.0%
! AACAAGCGGTATCCTTCTTT+TGG - Chr4:83649487-83649506 MsG0480023314.01.T01:intron 40.0%
! ACAAGCGGTATCCTTCTTTT+GGG - Chr4:83649488-83649507 MsG0480023314.01.T01:intron 40.0%
! GATGATGGCAAAAAGAGAAG+AGG - Chr4:83647077-83647096 MsG0480023314.01.T01:three_prime_UTR 40.0%
! GCTTGTTGGTAAAGCTTTCT+AGG + Chr4:83649474-83649493 None:intergenic 40.0%
!! GGGTAAAATTTGAAGGCATC+AGG - Chr4:83647805-83647824 MsG0480023314.01.T01:intron 40.0%
!! TCTGGGCTAGAGTTTTCTTT+TGG + Chr4:83648861-83648880 None:intergenic 40.0%
AAACCAAAGACTCACTAGGG+TGG - Chr4:83647609-83647628 MsG0480023314.01.T01:intron 45.0%
AACAGAACACGTGGCAATAG+GGG + Chr4:83649061-83649080 None:intergenic 45.0%
AACCAAAGACTCACTAGGGT+GGG - Chr4:83647610-83647629 MsG0480023314.01.T01:intron 45.0%
AATGTGACCATGCTCACATC+AGG - Chr4:83648506-83648525 MsG0480023314.01.T01:intron 45.0%
AATTGAGGAGAATGGGCACT+AGG - Chr4:83649271-83649290 MsG0480023314.01.T01:intron 45.0%
ACGTAGACGAATGCCATTGA+AGG + Chr4:83647001-83647020 None:intergenic 45.0%
AGACATTCCTGATGTGAGCA+TGG + Chr4:83648516-83648535 None:intergenic 45.0%
AGTGTAGGGATACACCGAAA+CGG - Chr4:83648893-83648912 MsG0480023314.01.T01:intron 45.0%
ATCCTACCAAACAGAACACG+TGG + Chr4:83649070-83649089 None:intergenic 45.0%
ATGTGGGAAGGATAGATGTG+TGG + Chr4:83648997-83649016 None:intergenic 45.0%
ATTGAGGAGAATGGGCACTA+GGG - Chr4:83649272-83649291 MsG0480023314.01.T01:intron 45.0%
CAAACAGAACACGTGGCAAT+AGG + Chr4:83649063-83649082 None:intergenic 45.0%
CACCGAACAAATCAACGAAG+AGG - Chr4:83647125-83647144 MsG0480023314.01.T01:CDS 45.0%
CATAAAGTGGAAAAGGAGCG+CGG + Chr4:83649175-83649194 None:intergenic 45.0%
CATACCTGAAAAGTGGAGAG+TGG - Chr4:83648014-83648033 MsG0480023314.01.T01:intron 45.0%
CGAAGAGGTTGTTGACCTTA+AGG - Chr4:83647140-83647159 MsG0480023314.01.T01:CDS 45.0%
CTATTGCCACGTGTTCTGTT+TGG - Chr4:83649061-83649080 MsG0480023314.01.T01:intron 45.0%
CTCCGTCTTTAGTGAAGCTT+CGG - Chr4:83649651-83649670 MsG0480023314.01.T01:CDS 45.0%
CTCGCTTGCTTACTGTAAAG+CGG - Chr4:83649543-83649562 MsG0480023314.01.T01:intron 45.0%
GAGTCTACAAGCCATCGTAT+TGG + Chr4:83648108-83648127 None:intergenic 45.0%
GTGGGGTGACTAATAACACA+GGG + Chr4:83648948-83648967 None:intergenic 45.0%
TACCTGAAAAGTGGAGAGTG+GGG - Chr4:83648016-83648035 MsG0480023314.01.T01:intron 45.0%
TAGACGAATGCCATTGAAGG+AGG + Chr4:83646998-83647017 None:intergenic 45.0%
TCAAACTTAAGACCCGGCAA+TGG + Chr4:83648159-83648178 None:intergenic 45.0%
TCCCGAAGCTTCACTAAAGA+CGG + Chr4:83649656-83649675 None:intergenic 45.0%
TCCGTCTTTAGTGAAGCTTC+GGG - Chr4:83649652-83649671 MsG0480023314.01.T01:CDS 45.0%
TCCTCCAAGCCATCTTACAA+CGG + Chr4:83648048-83648067 None:intergenic 45.0%
TCGCTTGCTTACTGTAAAGC+GGG - Chr4:83649544-83649563 MsG0480023314.01.T01:intron 45.0%
TGTGGGGTGACTAATAACAC+AGG + Chr4:83648949-83648968 None:intergenic 45.0%
TTCGGTCTCAGTTGTGATGA+TGG - Chr4:83647062-83647081 MsG0480023314.01.T01:three_prime_UTR 45.0%
TTTATGCAACACACCCGCAT+GGG - Chr4:83649189-83649208 MsG0480023314.01.T01:intron 45.0%
! AAGAAGGTGAAGTAACGGAG+AGG + Chr4:83646930-83646949 None:intergenic 45.0%
! ACAACTGGCTTCTTATTGCC+TGG - Chr4:83647539-83647558 MsG0480023314.01.T01:intron 45.0%
! CAGAAGTCTGTCAGTACTGA+AGG + Chr4:83649121-83649140 None:intergenic 45.0%
! CATTACGAGCGGATTTCTGA+AGG + Chr4:83647185-83647204 None:intergenic 45.0%
! GGAATGAATAGGGTGCTAGT+AGG - Chr4:83647427-83647446 MsG0480023314.01.T01:intron 45.0%
! GGATAGATGTGTGGTGGAAT+AGG + Chr4:83648988-83649007 None:intergenic 45.0%
! TGTCAGTACTGAAGGACTGA+AGG + Chr4:83649113-83649132 None:intergenic 45.0%
!! CTCTTCGTTGATTTGTTCGG+TGG + Chr4:83647127-83647146 None:intergenic 45.0%
!!! CACTCTCCACTTTTCAGGTA+TGG + Chr4:83648016-83648035 None:intergenic 45.0%
!!! TCCTCTGTTTTGGGGTTCTT+CGG + Chr4:83648352-83648371 None:intergenic 45.0%
!! ATATTAAAACTAAAAATAAA+TGG + Chr4:83649423-83649442 None:intergenic 5.0%
!! TATTAAAACTAAAAATAAAT+GGG + Chr4:83649422-83649441 None:intergenic 5.0%
AAAGCGGGAAAGAGAGATCG+AGG - Chr4:83649559-83649578 MsG0480023314.01.T01:intron 50.0%
ACCAAAGACTCACTAGGGTG+GGG - Chr4:83647611-83647630 MsG0480023314.01.T01:intron 50.0%
ACCGAAGAACCCCAAAACAG+AGG - Chr4:83648348-83648367 MsG0480023314.01.T01:intron 50.0%
AGAAGCCGCTGAAGCTGAAA+AGG - Chr4:83649691-83649710 MsG0480023314.01.T01:CDS 50.0%
AGCGACGAAACACACCTCTT+CGG - Chr4:83647044-83647063 MsG0480023314.01.T01:three_prime_UTR 50.0%
AGCTTCACTAAAGACGGAGG+TGG + Chr4:83649650-83649669 None:intergenic 50.0%
ATACCGTCTTACGCATGCGA+CGG + Chr4:83647227-83647246 None:intergenic 50.0%
ATGGGAGATGCAGGAACCAA+TGG + Chr4:83649032-83649051 None:intergenic 50.0%
ATGGGCACTAGGGATTCAGT+AGG - Chr4:83649282-83649301 MsG0480023314.01.T01:intron 50.0%
CATCACAACTGAGACCGAAG+AGG + Chr4:83647061-83647080 None:intergenic 50.0%
CGAAGCTTCACTAAAGACGG+AGG + Chr4:83649653-83649672 None:intergenic 50.0%
CTTTATGCAACACACCCGCA+TGG - Chr4:83649188-83649207 MsG0480023314.01.T01:intron 50.0%
GCATGAGCAACTCTCCCTTA+AGG + Chr4:83647158-83647177 None:intergenic 50.0%
GCTGGAATTGTGCACGTGTT+TGG + Chr4:83647027-83647046 None:intergenic 50.0%
GTATTGCGGCGCATAGCAAT+TGG - Chr4:83647948-83647967 MsG0480023314.01.T01:intron 50.0%
GTCTTTAGTGAAGCTTCGGG+AGG - Chr4:83649655-83649674 MsG0480023314.01.T01:CDS 50.0%
TGCCACGTGTTCTGTTTGGT+AGG - Chr4:83649065-83649084 MsG0480023314.01.T01:intron 50.0%
TGCGGGTGTGTTGCATAAAG+TGG + Chr4:83649188-83649207 None:intergenic 50.0%
TGGAGGAGAAGTCATTCTCC+TGG - Chr4:83648061-83648080 MsG0480023314.01.T01:intron 50.0%
TGGGAAGGATAGATGTGTGG+TGG + Chr4:83648994-83649013 None:intergenic 50.0%
TTTAGTGAAGCTTCGGGAGG+AGG - Chr4:83649658-83649677 MsG0480023314.01.T01:CDS 50.0%
TTTCCGTCGCATGCGTAAGA+CGG - Chr4:83647221-83647240 MsG0480023314.01.T01:CDS 50.0%
! AGAGAGATCGAGGAGGGTAT+TGG - Chr4:83649569-83649588 MsG0480023314.01.T01:intron 50.0%
! CAAGTCTCTTGCACTGATCC+AGG + Chr4:83647560-83647579 None:intergenic 50.0%
! GACTCTCCCCATTTCAGGTA+TGG + Chr4:83647985-83648004 None:intergenic 50.0%
! TGCAGCCTTTTCAGCTTCAG+CGG + Chr4:83649699-83649718 None:intergenic 50.0%
!! TCGAGGAGGGTATTGGTAAG+AGG - Chr4:83649576-83649595 MsG0480023314.01.T01:intron 50.0%
!!! TTTTGGGGTTCTTCGGTTCC+TGG + Chr4:83648345-83648364 None:intergenic 50.0%
AAAAGTGGAGAGTGGGGTGG+TGG - Chr4:83648022-83648041 MsG0480023314.01.T01:intron 55.0%
ACGCATGCGACGGAAATCAC+TGG + Chr4:83647217-83647236 None:intergenic 55.0%
AGAACACGTGGCAATAGGGG+AGG + Chr4:83649058-83649077 None:intergenic 55.0%
CGGGAAAGAGAGATCGAGGA+GGG - Chr4:83649563-83649582 MsG0480023314.01.T01:intron 55.0%
CTGAAAAGTGGAGAGTGGGG+TGG - Chr4:83648019-83648038 MsG0480023314.01.T01:intron 55.0%
GAACACGTGGCAATAGGGGA+GGG + Chr4:83649057-83649076 None:intergenic 55.0%
GCTGAAAAGGCTGCATGAGC+TGG - Chr4:83649704-83649723 MsG0480023314.01.T01:CDS 55.0%
GTGGCCGTTGTAAGATGGCT+TGG - Chr4:83648041-83648060 MsG0480023314.01.T01:intron 55.0%
TAAATGGGGGTGGACCAGCT+TGG + Chr4:83649407-83649426 None:intergenic 55.0%
TCCCCACCCTAGTGAGTCTT+TGG + Chr4:83647615-83647634 None:intergenic 55.0%
TGGCAATAGGGGAGGGCAAT+GGG + Chr4:83649050-83649069 None:intergenic 55.0%
TTCGGGACTCTCCCCATTTC+AGG + Chr4:83647990-83648009 None:intergenic 55.0%
! GAAGAGGTGTGTTTCGTCGC+TGG + Chr4:83647045-83647064 None:intergenic 55.0%
! GCCGTTGTAAGATGGCTTGG+AGG - Chr4:83648044-83648063 MsG0480023314.01.T01:intron 55.0%
!! CACCCCACTCTCCACTTTTC+AGG + Chr4:83648021-83648040 None:intergenic 55.0%
ATGCAACACACCCGCATGGG+AGG - Chr4:83649192-83649211 MsG0480023314.01.T01:intron 60.0%
GCGGGAAAGAGAGATCGAGG+AGG - Chr4:83649562-83649581 MsG0480023314.01.T01:intron 60.0%
GTGGCAATAGGGGAGGGCAA+TGG + Chr4:83649051-83649070 None:intergenic 60.0%
! GGGTGGTGGCCGTTGTAAGA+TGG - Chr4:83648036-83648055 MsG0480023314.01.T01:intron 60.0%
CCCGCATGGGAGGCTCATGA+CGG - Chr4:83649202-83649221 MsG0480023314.01.T01:intron 65.0%
CCCGTCATGAGCCTCCCATG+CGG + Chr4:83649206-83649225 None:intergenic 65.0%
CCGCATGGGAGGCTCATGAC+GGG - Chr4:83649203-83649222 MsG0480023314.01.T01:intron 65.0%
CCGTCATGAGCCTCCCATGC+GGG + Chr4:83649205-83649224 None:intergenic 65.0%
GGGAGGGCAATGGGAGATGC+AGG + Chr4:83649041-83649060 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr4 gene 83646834 83649991 83646834 ID=MsG0480023314.01;Name=MsG0480023314.01
Chr4 mRNA 83646834 83649991 83646834 ID=MsG0480023314.01.T01;Parent=MsG0480023314.01;Name=MsG0480023314.01.T01;_AED=0.49;_eAED=0.49;_QI=85|1|1|1|1|1|2|270|168
Chr4 exon 83646834 83647286 83646834 ID=MsG0480023314.01.T01:exon:5959;Parent=MsG0480023314.01.T01
Chr4 exon 83649583 83649991 83649583 ID=MsG0480023314.01.T01:exon:5958;Parent=MsG0480023314.01.T01
Chr4 five_prime_UTR 83649907 83649991 83649907 ID=MsG0480023314.01.T01:five_prime_utr;Parent=MsG0480023314.01.T01
Chr4 CDS 83649583 83649906 83649583 ID=MsG0480023314.01.T01:cds;Parent=MsG0480023314.01.T01
Chr4 CDS 83647104 83647286 83647104 ID=MsG0480023314.01.T01:cds;Parent=MsG0480023314.01.T01
Chr4 three_prime_UTR 83646834 83647103 83646834 ID=MsG0480023314.01.T01:three_prime_utr;Parent=MsG0480023314.01.T01
Gene Sequence

>MsG0480023314.01.T01

ATGTTGAACCTCTCCGTTACTTCACCTTCTTCTTCTTCAACACTTTCCTTTCTTCCAAAACCATTACAATTCAAAACCTCCTTCAATGGCATTCGTCTACGTCAACCAAACACGTGCACAATTCCAGCGACGAAACACACCTCTTCGGTCTCAGTTGTGATGATGGCAAAAAGAGAAGAGGAATTGAAGCAAATTAGAACTAAAACCACCGAACAAATCAACGAAGAGGTTGTTGACCTTAAGGGAGAGTTGCTCATGCTTCGCCTTCAGAAATCCGCTCGTAATGAGTTTAAGTCCAGTGATTTCCGTCGCATGCGTAAGACGATTGCTCGCTTGCTTACTGTAAAGCGGGAAAGAGAGATCGAGGAGGGTATTGGTAAGAGGTTGTCCAGAAAGCTTGATAAAAAATGGAAGAAAAGCATTGTTGTAAAACCACCTCCGTCTTTAGTGAAGCTTCGGGAGGAGGAAGCAGCTGCAGAAGCCGCTGAAGCTGAAAAGGCTGCATGA

Protein sequence

>MsG0480023314.01.T01

MLNLSVTSPSSSSTLSFLPKPLQFKTSFNGIRLRQPNTCTIPATKHTSSVSVVMMAKREEELKQIRTKTTEQINEEVVDLKGELLMLRLQKSARNEFKSSDFRRMRKTIARLLTVKREREIEEGIGKRLSRKLDKKWKKSIVVKPPPSLVKLREEEAAAEAAEAEKAA*