AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180002955.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180002955.01.T01 MTR_1g053570 95.528 246 6 2 1 246 1 241 3.29e-170 470
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180002955.01.T01 AT3G57910 54.753 263 102 4 2 255 1 255 1.56e-76 233

Find 71 sgRNAs with CRISPR-Local

Find 247 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTACATGGCTGACCTTTCT+AGG 0.178606 1:+53758534 MsG0180002955.01.T01:CDS
CAACTAAATCTTCATCAAAA+AGG 0.179721 1:+53758597 MsG0180002955.01.T01:CDS
CCAATGTTTGATTGTGGTAT+TGG 0.340068 1:-53760978 None:intergenic
CAATTTCCCGATTCTCCAAT+TGG 0.343725 1:-53761280 None:intergenic
CCCTTGACCAATTGGAGAAT+CGG 0.353036 1:+53761273 MsG0180002955.01.T01:CDS
CAGGCTCTGATGGAAGAATT+CGG 0.370055 1:+53761185 MsG0180002955.01.T01:CDS
CCCACAAGGAGAAGAAGAAA+AGG 0.377470 1:+53761126 MsG0180002955.01.T01:CDS
GCCAATTGAAAGCTCTTAAC+TGG 0.377717 1:+53760880 MsG0180002955.01.T01:CDS
TGCCCGATCCCTGCTTGCCA+AGG 0.390142 1:-53761043 None:intergenic
TGCCCTTGGCAAGCAGGGAT+CGG 0.394852 1:+53761040 MsG0180002955.01.T01:CDS
CTCTTGGAAGAGTTGATTGA+AGG 0.396961 1:-53760858 None:intergenic
CTGAATCAACAACATCTATC+AGG 0.397846 1:+53758486 MsG0180002955.01.T01:CDS
CGACGGTCACGAGCAGGTAT+AGG 0.404502 1:+53761092 MsG0180002955.01.T01:CDS
GCCCTTGGCAAGCAGGGATC+GGG 0.412306 1:+53761041 MsG0180002955.01.T01:CDS
GCCAGTTAAGAGCTTTCAAT+TGG 0.418381 1:-53760881 None:intergenic
TTGGCAAGCAGGGATCGGGC+AGG 0.423419 1:+53761045 MsG0180002955.01.T01:CDS
AAGAGCTTTCAATTGGCTCT+TGG 0.424774 1:-53760874 None:intergenic
TCAGCATCATCCTCGTTCTT+CGG 0.442789 1:-53761311 None:intergenic
AAATCACGATCGACAGGAAA+AGG 0.445020 1:+53761153 MsG0180002955.01.T01:CDS
AAAGGCTACCCTTGACCAAT+TGG 0.446594 1:+53761265 MsG0180002955.01.T01:CDS
AGGTTCTGCCCTTGGCAAGC+AGG 0.450643 1:+53761034 MsG0180002955.01.T01:CDS
CCTTGACCAATTGGAGAATC+GGG 0.462568 1:+53761274 MsG0180002955.01.T01:CDS
TCTCCTTGTGGGGATCCTCT+AGG 0.462647 1:-53761115 None:intergenic
GAAGAATGAGCAGGCTCTGA+TGG 0.464030 1:+53761175 MsG0180002955.01.T01:CDS
TGAACAAACCTTGGCAAAAG+TGG 0.471141 1:+53760950 MsG0180002955.01.T01:CDS
TTCAATTACTGCCTCTTCTG+TGG 0.476483 1:+53762164 MsG0180002955.01.T01:CDS
TATACACCAGGTTCTGCCCT+TGG 0.478103 1:+53761026 MsG0180002955.01.T01:CDS
GAAATTCGACGGTCACGAGC+AGG 0.483570 1:+53761086 MsG0180002955.01.T01:CDS
TGCTTGCCAAGGGCAGAACC+TGG 0.484683 1:-53761032 None:intergenic
CCCGATTCTCCAATTGGTCA+AGG 0.492852 1:-53761274 None:intergenic
TGGCAAGCAGGGATCGGGCA+GGG 0.498962 1:+53761046 MsG0180002955.01.T01:CDS
GAAGATTTAGTTGAAATTGA+AGG 0.499098 1:-53758587 None:intergenic
ATCGGGCAGGGCTGAACCAG+TGG 0.511366 1:+53761058 MsG0180002955.01.T01:CDS
ATTTAAGCTTCTCAAACAGA+TGG 0.513804 1:+53761001 MsG0180002955.01.T01:CDS
AGGCTCTGATGGAAGAATTC+GGG 0.517833 1:+53761186 MsG0180002955.01.T01:CDS
GGTTCTGCCCTTGGCAAGCA+GGG 0.518597 1:+53761035 MsG0180002955.01.T01:CDS
TGATGGAAGAATTCGGGTCA+AGG 0.518913 1:+53761192 MsG0180002955.01.T01:CDS
GCCCGATCCCTGCTTGCCAA+GGG 0.521046 1:-53761042 None:intergenic
CCACAAGGAGAAGAAGAAAA+GGG 0.524848 1:+53761127 MsG0180002955.01.T01:CDS
GGGAGGAAATCACGATCGAC+AGG 0.526437 1:+53761147 MsG0180002955.01.T01:CDS
ATTGGAGAATCGGGAAATTG+TGG 0.527475 1:+53761283 MsG0180002955.01.T01:CDS
AGAAATCGCGATGGCAGAGT+AGG 0.531906 1:+53761216 MsG0180002955.01.T01:CDS
AGAGGAAGAAATAACAGAAG+AGG 0.537870 1:+53761349 MsG0180002955.01.T01:CDS
TTAAATCCAATGTTTGATTG+TGG 0.548479 1:-53760984 None:intergenic
TTTAAGCTTCTCAAACAGAT+GGG 0.551840 1:+53761002 MsG0180002955.01.T01:CDS
TCACTTTGCATCCACAGAAG+AGG 0.562538 1:-53762175 None:intergenic
ACAAGAGGATGAACAAACCT+TGG 0.566502 1:+53760941 MsG0180002955.01.T01:CDS
CGGAAGGAAGAAACCTAGAA+AGG 0.570557 1:-53758547 None:intergenic
CCAATACCACAATCAAACAT+TGG 0.575827 1:+53760978 MsG0180002955.01.T01:CDS
CAGGAAAAGGAAGAATGAGC+AGG 0.576506 1:+53761166 MsG0180002955.01.T01:CDS
GCATCATCCTCGTTCTTCGG+TGG 0.578959 1:-53761308 None:intergenic
AGAAAGAAAGCAAATACAAG+AGG 0.580568 1:+53760926 MsG0180002955.01.T01:CDS
CGTCGAATTTCAATACCCAC+TGG 0.583668 1:-53761074 None:intergenic
CCGATTCTCCAATTGGTCAA+GGG 0.583969 1:-53761273 None:intergenic
AAGCTCTTAACTGGCAAGAA+CGG 0.587734 1:+53760889 MsG0180002955.01.T01:CDS
TCGGGCAGGGCTGAACCAGT+GGG 0.592431 1:+53761059 MsG0180002955.01.T01:CDS
TGAGGGTGAAGATCAAGAAG+AGG 0.599844 1:+53761331 MsG0180002955.01.T01:CDS
TGATGATAACGATGACTACA+TGG 0.603022 1:+53758520 MsG0180002955.01.T01:CDS
CAAGGAGAAGAAGAAAAGGG+AGG 0.611846 1:+53761130 MsG0180002955.01.T01:CDS
GAAGAACGAGGATGATGCTG+AGG 0.617320 1:+53761313 MsG0180002955.01.T01:CDS
AGGATGCATCATAGCATCAT+CGG 0.624936 1:-53758567 None:intergenic
AAACAGATGGGTTATACACC+AGG 0.633040 1:+53761014 MsG0180002955.01.T01:CDS
CGATGTATTAATGAAACTGA+GGG 0.643502 1:+53762136 MsG0180002955.01.T01:CDS
TGCATCATAGCATCATCGGA+AGG 0.647809 1:-53758563 None:intergenic
TCGATGTATTAATGAAACTG+AGG 0.650645 1:+53762135 MsG0180002955.01.T01:CDS
CAGTGGGTATTGAAATTCGA+CGG 0.653278 1:+53761075 MsG0180002955.01.T01:CDS
AGGCCTAGAGGATCCCCACA+AGG 0.671378 1:+53761112 MsG0180002955.01.T01:CDS
AAGAACGAGGATGATGCTGA+GGG 0.681423 1:+53761314 MsG0180002955.01.T01:CDS
ACGAGCAGGTATAGGCCTAG+AGG 0.682619 1:+53761100 MsG0180002955.01.T01:CDS
TGTGGAACCACCGAAGAACG+AGG 0.697276 1:+53761301 MsG0180002955.01.T01:CDS
GGTCAAGGCAGAAATCGCGA+TGG 0.699682 1:+53761207 MsG0180002955.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTATTTATTTTAATTGTG+TGG + Chr1:53758704-53758723 MsG0180002955.01.T01:intron 10.0%
!!! CAATTTTTAATTAAAAAAAG+AGG + Chr1:53761989-53762008 MsG0180002955.01.T01:intron 10.0%
!!! TTCTATATAATTCTTTTTTT+TGG + Chr1:53759972-53759991 MsG0180002955.01.T01:intron 10.0%
!! AATCAAAAAAATAAGATACA+TGG - Chr1:53759713-53759732 None:intergenic 15.0%
!! TCAACTTTAAATGAATAATA+GGG - Chr1:53758652-53758671 None:intergenic 15.0%
!!! AAAAATTAAGTTGATATGTA+TGG - Chr1:53761387-53761406 None:intergenic 15.0%
!!! AATTCTTATTTCTTCTAAAA+GGG + Chr1:53760629-53760648 MsG0180002955.01.T01:intron 15.0%
!!! ATTTTTTCTAAAAAAGTGAT+TGG - Chr1:53760533-53760552 None:intergenic 15.0%
!!! CACTTTTTAAATTGTTATAA+AGG - Chr1:53760790-53760809 None:intergenic 15.0%
!!! TATTTATTTAAAAGCATGAT+TGG - Chr1:53758685-53758704 None:intergenic 15.0%
!!! TCCATTTTCTTAAAAATTAA+GGG + Chr1:53759479-53759498 MsG0180002955.01.T01:intron 15.0%
!!! TTCCATTTTCTTAAAAATTA+AGG + Chr1:53759478-53759497 MsG0180002955.01.T01:intron 15.0%
!!! TTTTTTCAATTAAGATTAGA+GGG + Chr1:53759168-53759187 MsG0180002955.01.T01:intron 15.0%
!!! TTTTTTTCAATTAAGATTAG+AGG + Chr1:53759167-53759186 MsG0180002955.01.T01:intron 15.0%
!!! TTTTTTTTGGTTATATGTAT+TGG + Chr1:53759985-53760004 MsG0180002955.01.T01:intron 15.0%
!! AACATTGTACAAATCATTTA+TGG + Chr1:53760218-53760237 MsG0180002955.01.T01:intron 20.0%
!! AACTAAATCTTCATCAAAAA+GGG + Chr1:53758598-53758617 MsG0180002955.01.T01:CDS 20.0%
!! CAATGTTTAAAAAACTAAAC+CGG + Chr1:53760051-53760070 MsG0180002955.01.T01:intron 20.0%
!! CTCAACTTTAAATGAATAAT+AGG - Chr1:53758653-53758672 None:intergenic 20.0%
!! TTATAAACTAGCTAGATTAT+CGG - Chr1:53758846-53758865 None:intergenic 20.0%
!! TTGGGAATATTAATTAAACT+TGG - Chr1:53760719-53760738 None:intergenic 20.0%
!! TTGTACAAATACAAATACAT+AGG - Chr1:53760344-53760363 None:intergenic 20.0%
!! TTTAAATGAATAATAGGGTA+TGG - Chr1:53758647-53758666 None:intergenic 20.0%
!!! ACCCTTAATTTTTAAGAAAA+TGG - Chr1:53759483-53759502 None:intergenic 20.0%
!!! AGTCATTGTTAATTTTAACA+AGG + Chr1:53761241-53761260 MsG0180002955.01.T01:CDS 20.0%
!!! ATTCATTTAAAGTTGAGATT+AGG + Chr1:53758656-53758675 MsG0180002955.01.T01:intron 20.0%
!!! ATTCTTATTTCTTCTAAAAG+GGG + Chr1:53760630-53760649 MsG0180002955.01.T01:intron 20.0%
!!! ATTTTATTAAAAGACCTGTT+TGG - Chr1:53759304-53759323 None:intergenic 20.0%
!!! CAATTCTTATTTCTTCTAAA+AGG + Chr1:53760628-53760647 MsG0180002955.01.T01:intron 20.0%
!!! TAGCTAGTTTATAACTAATA+AGG + Chr1:53758852-53758871 MsG0180002955.01.T01:intron 20.0%
!!! TTTTTCAATTAAGATTAGAG+GGG + Chr1:53759169-53759188 MsG0180002955.01.T01:intron 20.0%
! AGAAATCTGCATATTAACAA+GGG - Chr1:53760826-53760845 None:intergenic 25.0%
! AGTTCCAATTTAATTGGAAT+TGG - Chr1:53761842-53761861 None:intergenic 25.0%
! ATACATACCATGATATGTAT+CGG - Chr1:53761554-53761573 None:intergenic 25.0%
! ATGATCAAATCAGTAATTCA+CGG - Chr1:53759921-53759940 None:intergenic 25.0%
! ATGTTTGTTCAATGTTCATT+CGG + Chr1:53760165-53760184 MsG0180002955.01.T01:intron 25.0%
! ATTTGACCATATCAAAAACT+AGG - Chr1:53761423-53761442 None:intergenic 25.0%
! CAACTAAATCTTCATCAAAA+AGG + Chr1:53758597-53758616 MsG0180002955.01.T01:CDS 25.0%
! CATTACATATTAACAAGAGA+AGG - Chr1:53760267-53760286 None:intergenic 25.0%
! CCAATAGATAAAAAAGATGA+GGG + Chr1:53760735-53760754 MsG0180002955.01.T01:intron 25.0%
! CTATAAGAATTGAAAACAGA+GGG - Chr1:53759837-53759856 None:intergenic 25.0%
! GAAGATTTAGTTGAAATTGA+AGG - Chr1:53758590-53758609 None:intergenic 25.0%
! GCTGACAAAAATAAGTTATA+AGG + Chr1:53759258-53759277 MsG0180002955.01.T01:intron 25.0%
! TCTATAAGAATTGAAAACAG+AGG - Chr1:53759838-53759857 None:intergenic 25.0%
! TGGTTATATGTATTGGATAA+TGG + Chr1:53759992-53760011 MsG0180002955.01.T01:intron 25.0%
! TTAAATCCAATGTTTGATTG+TGG - Chr1:53760987-53761006 None:intergenic 25.0%
!! TTTTAATAAAATGAGCTCAC+AGG + Chr1:53759312-53759331 MsG0180002955.01.T01:intron 25.0%
!!! CCTCATCTTTTTTATCTATT+GGG - Chr1:53760737-53760756 None:intergenic 25.0%
!!! TGTTAATTTTAACAAGGCAA+AGG + Chr1:53761247-53761266 MsG0180002955.01.T01:CDS 25.0%
!!! TGTTTCTAAGATGATACAAA+TGG - Chr1:53759871-53759890 None:intergenic 25.0%
!!! TTTCAACCTAGTTTTTGATA+TGG + Chr1:53761414-53761433 MsG0180002955.01.T01:intron 25.0%
AAAAGCCACAATTCATTACA+GGG + Chr1:53761868-53761887 MsG0180002955.01.T01:intron 30.0%
AAACTGCATTTACAAGCTTA+TGG + Chr1:53759008-53759027 MsG0180002955.01.T01:intron 30.0%
AAGATTAGAGGGGTAAAATT+AGG + Chr1:53759179-53759198 MsG0180002955.01.T01:intron 30.0%
AAGTTCAAATGCTTAACATG+AGG - Chr1:53759809-53759828 None:intergenic 30.0%
AATAGCTACATCAGATATCT+TGG - Chr1:53759609-53759628 None:intergenic 30.0%
AATTGCATTAGAAGACATCA+AGG - Chr1:53760613-53760632 None:intergenic 30.0%
ACTATTTGCGTATGTATCTT+GGG - Chr1:53761526-53761545 None:intergenic 30.0%
AGAAAGAAAGCAAATACAAG+AGG + Chr1:53760926-53760945 MsG0180002955.01.T01:CDS 30.0%
AGCAATACTTAATGCTCTTT+GGG - Chr1:53760685-53760704 None:intergenic 30.0%
ATAGCTACATCAGATATCTT+GGG - Chr1:53759608-53759627 None:intergenic 30.0%
ATTCACAACCAATTCAAACA+TGG - Chr1:53762081-53762100 None:intergenic 30.0%
ATTGATGTCCAAAATCTTTG+AGG + Chr1:53759673-53759692 MsG0180002955.01.T01:intron 30.0%
ATTGGTTGTGAATTTGACTA+TGG + Chr1:53762088-53762107 MsG0180002955.01.T01:intron 30.0%
ATTTAAGCTTCTCAAACAGA+TGG + Chr1:53761001-53761020 MsG0180002955.01.T01:CDS 30.0%
ATTTGACTATGGAAGTGAAA+TGG + Chr1:53762099-53762118 MsG0180002955.01.T01:intron 30.0%
CAAACACTATAAATCCCATT+TGG - Chr1:53759087-53759106 None:intergenic 30.0%
CAAATGGGATTTATAGTGTT+TGG + Chr1:53759085-53759104 MsG0180002955.01.T01:intron 30.0%
CAATTAAGCCTAATCCAAAT+GGG + Chr1:53759070-53759089 MsG0180002955.01.T01:intron 30.0%
CAGAAATCTGCATATTAACA+AGG - Chr1:53760827-53760846 None:intergenic 30.0%
CATTGAACAAACATTGTCTA+CGG - Chr1:53760159-53760178 None:intergenic 30.0%
CCAATTTAATTGGAATTGGA+AGG - Chr1:53761838-53761857 None:intergenic 30.0%
CCCAATAGATAAAAAAGATG+AGG + Chr1:53760734-53760753 MsG0180002955.01.T01:intron 30.0%
CCTTCCAATTCCAATTAAAT+TGG + Chr1:53761835-53761854 MsG0180002955.01.T01:intron 30.0%
CGATGTATTAATGAAACTGA+GGG + Chr1:53762136-53762155 MsG0180002955.01.T01:CDS 30.0%
CTAAATGTAACCATAATTGC+CGG + Chr1:53759377-53759396 MsG0180002955.01.T01:intron 30.0%
CTATAAATCCCATTTGGATT+AGG - Chr1:53759081-53759100 None:intergenic 30.0%
CTCTCTGTTATTATTGAACT+TGG + Chr1:53762051-53762070 MsG0180002955.01.T01:intron 30.0%
GGCAATTATGGTTACATTTA+GGG - Chr1:53759378-53759397 None:intergenic 30.0%
GGGAATAGTTCCAATTTAAT+TGG - Chr1:53761848-53761867 None:intergenic 30.0%
TACATGTCTTAGAAATATCG+AGG - Chr1:53760432-53760451 None:intergenic 30.0%
TCAATTAAGCCTAATCCAAA+TGG + Chr1:53759069-53759088 MsG0180002955.01.T01:intron 30.0%
TCGATGTATTAATGAAACTG+AGG + Chr1:53762135-53762154 MsG0180002955.01.T01:CDS 30.0%
TGAAAAAGTGACTTAATGTG+TGG - Chr1:53759538-53759557 None:intergenic 30.0%
TGCACTTATCAGATATCTTT+AGG + Chr1:53760395-53760414 MsG0180002955.01.T01:intron 30.0%
TTCCTCAAGATTCAAAAAAG+TGG + Chr1:53761904-53761923 MsG0180002955.01.T01:intron 30.0%
TTGATGTCCAAAATCTTTGA+GGG + Chr1:53759674-53759693 MsG0180002955.01.T01:intron 30.0%
TTTAAGCTTCTCAAACAGAT+GGG + Chr1:53761002-53761021 MsG0180002955.01.T01:CDS 30.0%
TTTAGTCTAACAAAGATGCA+TGG - Chr1:53759743-53759762 None:intergenic 30.0%
! GCTAATAAACTAGCTTATAG+CGG + Chr1:53758816-53758835 MsG0180002955.01.T01:intron 30.0%
! TGTAATGAATTGTGGCTTTT+GGG - Chr1:53761868-53761887 None:intergenic 30.0%
! TTGGTAATCCATGTTTGAAT+TGG + Chr1:53762070-53762089 MsG0180002955.01.T01:intron 30.0%
!! GATATTTCTAAGACATGTAG+AGG + Chr1:53760433-53760452 MsG0180002955.01.T01:intron 30.0%
!! TTGAAACGTTTGATTTGGTT+AGG + Chr1:53760188-53760207 MsG0180002955.01.T01:intron 30.0%
!!! CATGTACTGATCAACTTTTT+TGG - Chr1:53760377-53760396 None:intergenic 30.0%
!!! CCCTCATCTTTTTTATCTAT+TGG - Chr1:53760738-53760757 None:intergenic 30.0%
!!! GAAAGCTTGTGTGTTATTTT+TGG - Chr1:53761451-53761470 None:intergenic 30.0%
AAACAACAGTTGAACCACTT+AGG + Chr1:53760125-53760144 MsG0180002955.01.T01:intron 35.0%
ACGATTCATTTCAGTATCGT+AGG + Chr1:53761621-53761640 MsG0180002955.01.T01:intron 35.0%
ACTGAAATGAATCGTGATAC+TGG - Chr1:53761616-53761635 None:intergenic 35.0%
AGAGGAAGAAATAACAGAAG+AGG + Chr1:53761349-53761368 MsG0180002955.01.T01:CDS 35.0%
ATAAGGTCATGAGAAAGTGA+CGG + Chr1:53759275-53759294 MsG0180002955.01.T01:intron 35.0%
ATCTGATGTAGCTATTAGCT+AGG + Chr1:53759613-53759632 MsG0180002955.01.T01:intron 35.0%
ATGTCTGAATGCAGTAAACA+AGG - Chr1:53761964-53761983 None:intergenic 35.0%
CAAAAGCCACAATTCATTAC+AGG + Chr1:53761867-53761886 MsG0180002955.01.T01:intron 35.0%
CCAATACCACAATCAAACAT+TGG + Chr1:53760978-53760997 MsG0180002955.01.T01:CDS 35.0%
CCAATGTTTGATTGTGGTAT+TGG - Chr1:53760981-53761000 None:intergenic 35.0%
CGATTCATTTCAGTATCGTA+GGG + Chr1:53761622-53761641 MsG0180002955.01.T01:intron 35.0%
CGGCAATTATGGTTACATTT+AGG - Chr1:53759379-53759398 None:intergenic 35.0%
CTGAATCAACAACATCTATC+AGG + Chr1:53758486-53758505 MsG0180002955.01.T01:CDS 35.0%
CTTGCATCTAGAAGTGATTA+AGG + Chr1:53758765-53758784 MsG0180002955.01.T01:intron 35.0%
GAATAATAGGGTATGGAAAG+TGG - Chr1:53758640-53758659 None:intergenic 35.0%
GAATCTGTAGTAGAAATCTG+TGG + Chr1:53758726-53758745 MsG0180002955.01.T01:intron 35.0%
GAATCTTGAGGAAAGTTGTA+AGG - Chr1:53761897-53761916 None:intergenic 35.0%
GACTATTTGCGTATGTATCT+TGG - Chr1:53761527-53761546 None:intergenic 35.0%
GAGCAATACTTAATGCTCTT+TGG - Chr1:53760686-53760705 None:intergenic 35.0%
GATACATACGCAAATAGTCA+TGG + Chr1:53761528-53761547 MsG0180002955.01.T01:intron 35.0%
GATACTTACTACCATGAACA+AGG - Chr1:53761504-53761523 None:intergenic 35.0%
GTGAACCAAAAAACAGTCTT+CGG - Chr1:53760591-53760610 None:intergenic 35.0%
GTGCTTGGATTAAGCTTATT+TGG + Chr1:53758888-53758907 MsG0180002955.01.T01:intron 35.0%
TCTGATGTAGCTATTAGCTA+GGG + Chr1:53759614-53759633 MsG0180002955.01.T01:intron 35.0%
TTCGGTTGAAACGTTTGATT+TGG + Chr1:53760183-53760202 MsG0180002955.01.T01:intron 35.0%
! CTGTAATGAATTGTGGCTTT+TGG - Chr1:53761869-53761888 None:intergenic 35.0%
! GATAAAAAAGATGAGGGTGT+TGG + Chr1:53760741-53760760 MsG0180002955.01.T01:intron 35.0%
! GGTTACATTTAGGGTCTATT+TGG - Chr1:53759369-53759388 None:intergenic 35.0%
! TGATGATAACGATGACTACA+TGG + Chr1:53758520-53758539 MsG0180002955.01.T01:CDS 35.0%
!! AGTTTTTCGCGTTTTTTACG+CGG + Chr1:53761709-53761728 MsG0180002955.01.T01:intron 35.0%
!! GTTCAACTGTTGTTTCATCT+TGG - Chr1:53760120-53760139 None:intergenic 35.0%
!!! GACCACTTTTTTGAATCTTG+AGG - Chr1:53761909-53761928 None:intergenic 35.0%
!!! GCTAGTTTTTTCCTTGTTCA+TGG + Chr1:53761490-53761509 MsG0180002955.01.T01:intron 35.0%
AAATCACGATCGACAGGAAA+AGG + Chr1:53761153-53761172 MsG0180002955.01.T01:CDS 40.0%
AAGCTCTTAACTGGCAAGAA+CGG + Chr1:53760889-53760908 MsG0180002955.01.T01:CDS 40.0%
AAGGACATGGTAGTCAAATC+GGG - Chr1:53761945-53761964 None:intergenic 40.0%
ACAAGAGGATGAACAAACCT+TGG + Chr1:53760941-53760960 MsG0180002955.01.T01:CDS 40.0%
AGATACATGGCACATCAAGT+AGG - Chr1:53759700-53759719 None:intergenic 40.0%
AGGATGCATCATAGCATCAT+CGG - Chr1:53758570-53758589 None:intergenic 40.0%
AGGCAACAGTCGAAAGAATT+TGG - Chr1:53760247-53760266 None:intergenic 40.0%
ATTGGAGAATCGGGAAATTG+TGG + Chr1:53761283-53761302 MsG0180002955.01.T01:CDS 40.0%
CAAGGACATGGTAGTCAAAT+CGG - Chr1:53761946-53761965 None:intergenic 40.0%
CAATTTCCCGATTCTCCAAT+TGG - Chr1:53761283-53761302 None:intergenic 40.0%
CCACAAGGAGAAGAAGAAAA+GGG + Chr1:53761127-53761146 MsG0180002955.01.T01:CDS 40.0%
CTACGGTTTAGTTACCTAAG+TGG - Chr1:53760142-53760161 None:intergenic 40.0%
CTATTAGCTAGGGACTAAAC+TGG + Chr1:53759624-53759643 MsG0180002955.01.T01:intron 40.0%
GAAGTGATTAAGGCTCTGTT+TGG + Chr1:53758775-53758794 MsG0180002955.01.T01:intron 40.0%
GAATGCAGTAAACAAGGACA+TGG - Chr1:53761958-53761977 None:intergenic 40.0%
GAGGATGAGGCAACATTTAT+TGG + Chr1:53760452-53760471 MsG0180002955.01.T01:intron 40.0%
GCCAATTGAAAGCTCTTAAC+TGG + Chr1:53760880-53760899 MsG0180002955.01.T01:CDS 40.0%
GCCAGTTAAGAGCTTTCAAT+TGG - Chr1:53760884-53760903 None:intergenic 40.0%
GCGTAAAAAACGCGAAAAAC+TGG - Chr1:53761710-53761729 None:intergenic 40.0%
TATGGAAGTGAAATGGATGC+AGG + Chr1:53762106-53762125 MsG0180002955.01.T01:intron 40.0%
TGAACAAACCTTGGCAAAAG+TGG + Chr1:53760950-53760969 MsG0180002955.01.T01:CDS 40.0%
TGGAATCGCTACCTATCAAT+CGG - Chr1:53759463-53759482 None:intergenic 40.0%
TTCAATTACTGCCTCTTCTG+TGG + Chr1:53762164-53762183 MsG0180002955.01.T01:CDS 40.0%
TTCGTTGTAGAACCATAACC+TGG - Chr1:53760097-53760116 None:intergenic 40.0%
! AAGAGCTTTCAATTGGCTCT+TGG - Chr1:53760877-53760896 None:intergenic 40.0%
! AAGTAGGCCCTCAAAGATTT+TGG - Chr1:53759684-53759703 None:intergenic 40.0%
! ACAGTCTTCGGTAGAGATTT+TGG - Chr1:53760579-53760598 None:intergenic 40.0%
! CCTTTTCTTCTTCTCCTTGT+GGG - Chr1:53761129-53761148 None:intergenic 40.0%
! CTCTTGGAAGAGTTGATTGA+AGG - Chr1:53760861-53760880 None:intergenic 40.0%
! CTTTTCTTCTTCTCCTTGTG+GGG - Chr1:53761128-53761147 None:intergenic 40.0%
! TCTAAGACATGTAGAGGATG+AGG + Chr1:53760439-53760458 MsG0180002955.01.T01:intron 40.0%
!! AAACAGATGGGTTATACACC+AGG + Chr1:53761014-53761033 MsG0180002955.01.T01:CDS 40.0%
!! CAGTGGGTATTGAAATTCGA+CGG + Chr1:53761075-53761094 MsG0180002955.01.T01:CDS 40.0%
!! GTTTTTCGCGTTTTTTACGC+GGG + Chr1:53761710-53761729 MsG0180002955.01.T01:intron 40.0%
!! TACAAAGAAGCATTGCAACC+CGG - Chr1:53761781-53761800 None:intergenic 40.0%
!!! CTCTACCGAAGACTGTTTTT+TGG + Chr1:53760583-53760602 MsG0180002955.01.T01:intron 40.0%
AAAGGCTACCCTTGACCAAT+TGG + Chr1:53761265-53761284 MsG0180002955.01.T01:CDS 45.0%
AAGAACGAGGATGATGCTGA+GGG + Chr1:53761314-53761333 MsG0180002955.01.T01:CDS 45.0%
ACTACATGGCTGACCTTTCT+AGG + Chr1:53758534-53758553 MsG0180002955.01.T01:CDS 45.0%
AGTAATTCACGGCTCATGAG+TGG - Chr1:53759910-53759929 None:intergenic 45.0%
CAAGGAGAAGAAGAAAAGGG+AGG + Chr1:53761130-53761149 MsG0180002955.01.T01:CDS 45.0%
CAGGAAAAGGAAGAATGAGC+AGG + Chr1:53761166-53761185 MsG0180002955.01.T01:CDS 45.0%
CCCACAAGGAGAAGAAGAAA+AGG + Chr1:53761126-53761145 MsG0180002955.01.T01:CDS 45.0%
CCCTTGACCAATTGGAGAAT+CGG + Chr1:53761273-53761292 MsG0180002955.01.T01:CDS 45.0%
CCGATTCTCCAATTGGTCAA+GGG - Chr1:53761276-53761295 None:intergenic 45.0%
CCTTGACCAATTGGAGAATC+GGG + Chr1:53761274-53761293 MsG0180002955.01.T01:CDS 45.0%
CGAAAAACTGGATTTCTGCC+GGG - Chr1:53761698-53761717 None:intergenic 45.0%
CGGAAGGAAGAAACCTAGAA+AGG - Chr1:53758550-53758569 None:intergenic 45.0%
CGTCGAATTTCAATACCCAC+TGG - Chr1:53761077-53761096 None:intergenic 45.0%
GAAAGTGACGGTTACCAAAC+AGG + Chr1:53759287-53759306 MsG0180002955.01.T01:intron 45.0%
GCAATATCTGACATGTGCCA+GGG - Chr1:53759416-53759435 None:intergenic 45.0%
GCGAAAAACTGGATTTCTGC+CGG - Chr1:53761699-53761718 None:intergenic 45.0%
GGAGACCCTGTAATGAATTG+TGG - Chr1:53761876-53761895 None:intergenic 45.0%
GGTGTAAGCTAATGTGTGCT+TGG + Chr1:53758873-53758892 MsG0180002955.01.T01:intron 45.0%
GTAATTCACGGCTCATGAGT+GGG - Chr1:53759909-53759928 None:intergenic 45.0%
GTCATGGCCGATACATATCA+TGG + Chr1:53761544-53761563 MsG0180002955.01.T01:intron 45.0%
GTTGTAGAACCATAACCTGG+AGG - Chr1:53760094-53760113 None:intergenic 45.0%
TAATTCACGGCTCATGAGTG+GGG - Chr1:53759908-53759927 None:intergenic 45.0%
TCACTTTGCATCCACAGAAG+AGG - Chr1:53762178-53762197 None:intergenic 45.0%
TCAGCATCATCCTCGTTCTT+CGG - Chr1:53761314-53761333 None:intergenic 45.0%
TCGTTTCACCTGCAGATACT+GGG + Chr1:53761659-53761678 MsG0180002955.01.T01:intron 45.0%
TGAGGGTGAAGATCAAGAAG+AGG + Chr1:53761331-53761350 MsG0180002955.01.T01:CDS 45.0%
TGATGGAAGAATTCGGGTCA+AGG + Chr1:53761192-53761211 MsG0180002955.01.T01:CDS 45.0%
TGCAATATCTGACATGTGCC+AGG - Chr1:53759417-53759436 None:intergenic 45.0%
TGCATCATAGCATCATCGGA+AGG - Chr1:53758566-53758585 None:intergenic 45.0%
TGTGACCCATCAGAAATGAC+CGG + Chr1:53761759-53761778 MsG0180002955.01.T01:intron 45.0%
! AGGCTCTGATGGAAGAATTC+GGG + Chr1:53761186-53761205 MsG0180002955.01.T01:CDS 45.0%
! CAGGCTCTGATGGAAGAATT+CGG + Chr1:53761185-53761204 MsG0180002955.01.T01:CDS 45.0%
! CCCTTTTCTTCTTCTCCTTG+TGG - Chr1:53761130-53761149 None:intergenic 45.0%
! CTGAAGTGTCACCGATTGAT+AGG + Chr1:53759449-53759468 MsG0180002955.01.T01:intron 45.0%
!! GGTCTCATTGGTTCGATATC+CGG - Chr1:53760073-53760092 None:intergenic 45.0%
ACGCGGGTCAGTACTGTAAT+CGG + Chr1:53761726-53761745 MsG0180002955.01.T01:intron 50.0%
AGAAATCGCGATGGCAGAGT+AGG + Chr1:53761216-53761235 MsG0180002955.01.T01:CDS 50.0%
AGGTGAAACGAGCTAGTTGC+AGG - Chr1:53761650-53761669 None:intergenic 50.0%
ATCGAACCAATGAGACCTCC+AGG + Chr1:53760076-53760095 MsG0180002955.01.T01:intron 50.0%
CCAATGAGACCTCCAGGTTA+TGG + Chr1:53760082-53760101 MsG0180002955.01.T01:intron 50.0%
CCATAACCTGGAGGTCTCAT+TGG - Chr1:53760085-53760104 None:intergenic 50.0%
CCCGATTCTCCAATTGGTCA+AGG - Chr1:53761277-53761296 None:intergenic 50.0%
CGACACAACACCGGCAATTA+TGG - Chr1:53759390-53759409 None:intergenic 50.0%
CGCAAATGAGCTTGTATCGC+TGG + Chr1:53761574-53761593 MsG0180002955.01.T01:intron 50.0%
CTCGTTTCACCTGCAGATAC+TGG + Chr1:53761658-53761677 MsG0180002955.01.T01:intron 50.0%
GAAGAACGAGGATGATGCTG+AGG + Chr1:53761313-53761332 MsG0180002955.01.T01:CDS 50.0%
GCAACCCGGTCATTTCTGAT+GGG - Chr1:53761767-53761786 None:intergenic 50.0%
GTGACCCATCAGAAATGACC+GGG + Chr1:53761760-53761779 MsG0180002955.01.T01:intron 50.0%
TATACACCAGGTTCTGCCCT+TGG + Chr1:53761026-53761045 MsG0180002955.01.T01:CDS 50.0%
TCATGAGTGGGGAGGAGTTA+AGG - Chr1:53759897-53759916 None:intergenic 50.0%
TGCAACCCGGTCATTTCTGA+TGG - Chr1:53761768-53761787 None:intergenic 50.0%
! GAAGAATGAGCAGGCTCTGA+TGG + Chr1:53761175-53761194 MsG0180002955.01.T01:CDS 50.0%
! GGTCATTTCTGATGGGTCAC+AGG - Chr1:53761760-53761779 None:intergenic 50.0%
!! TGGAGCTTCCACTTTTGCCA+AGG - Chr1:53760961-53760980 None:intergenic 50.0%
ACGAGCAGGTATAGGCCTAG+AGG + Chr1:53761100-53761119 MsG0180002955.01.T01:CDS 55.0%
CAACCTGACCCAGTATCTGC+AGG - Chr1:53761670-53761689 None:intergenic 55.0%
CGCGGGTCAGTACTGTAATC+GGG + Chr1:53761727-53761746 MsG0180002955.01.T01:intron 55.0%
GAAATTCGACGGTCACGAGC+AGG + Chr1:53761086-53761105 MsG0180002955.01.T01:CDS 55.0%
GCATCATCCTCGTTCTTCGG+TGG - Chr1:53761311-53761330 None:intergenic 55.0%
GGGAGGAAATCACGATCGAC+AGG + Chr1:53761147-53761166 MsG0180002955.01.T01:CDS 55.0%
GGTCAAGGCAGAAATCGCGA+TGG + Chr1:53761207-53761226 MsG0180002955.01.T01:CDS 55.0%
TCACCTGCAGATACTGGGTC+AGG + Chr1:53761664-53761683 MsG0180002955.01.T01:intron 55.0%
TCTCCTTGTGGGGATCCTCT+AGG - Chr1:53761118-53761137 None:intergenic 55.0%
TGTGGAACCACCGAAGAACG+AGG + Chr1:53761301-53761320 MsG0180002955.01.T01:CDS 55.0%
AGGCCTAGAGGATCCCCACA+AGG + Chr1:53761112-53761131 MsG0180002955.01.T01:CDS 60.0%
AGGTTCTGCCCTTGGCAAGC+AGG + Chr1:53761034-53761053 MsG0180002955.01.T01:CDS 60.0%
CGACGGTCACGAGCAGGTAT+AGG + Chr1:53761092-53761111 MsG0180002955.01.T01:CDS 60.0%
GGTTCTGCCCTTGGCAAGCA+GGG + Chr1:53761035-53761054 MsG0180002955.01.T01:CDS 60.0%
TGCCCTTGGCAAGCAGGGAT+CGG + Chr1:53761040-53761059 MsG0180002955.01.T01:CDS 60.0%
TGCTTGCCAAGGGCAGAACC+TGG - Chr1:53761035-53761054 None:intergenic 60.0%
TTCACGGCTCATGAGTGGGG+AGG - Chr1:53759905-53759924 None:intergenic 60.0%
!! CCAGGGTGTCGACACAACAC+CGG - Chr1:53759399-53759418 None:intergenic 60.0%
ATCGGGCAGGGCTGAACCAG+TGG + Chr1:53761058-53761077 MsG0180002955.01.T01:CDS 65.0%
GCCCGATCCCTGCTTGCCAA+GGG - Chr1:53761045-53761064 None:intergenic 65.0%
GCCCTTGGCAAGCAGGGATC+GGG + Chr1:53761041-53761060 MsG0180002955.01.T01:CDS 65.0%
TCGGGCAGGGCTGAACCAGT+GGG + Chr1:53761059-53761078 MsG0180002955.01.T01:CDS 65.0%
TGCCCGATCCCTGCTTGCCA+AGG - Chr1:53761046-53761065 None:intergenic 65.0%
TGGCAAGCAGGGATCGGGCA+GGG + Chr1:53761046-53761065 MsG0180002955.01.T01:CDS 65.0%
TTGGCAAGCAGGGATCGGGC+AGG + Chr1:53761045-53761064 MsG0180002955.01.T01:CDS 65.0%
! CTGGGTCAGGTTGCGTGACC+CGG + Chr1:53761677-53761696 MsG0180002955.01.T01:intron 65.0%
!! CCGGTGTTGTGTCGACACCC+TGG + Chr1:53759396-53759415 MsG0180002955.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr1 gene 53758479 53762235 53758479 ID=MsG0180002955.01;Name=MsG0180002955.01
Chr1 mRNA 53758479 53762235 53758479 ID=MsG0180002955.01.T01;Parent=MsG0180002955.01;Name=MsG0180002955.01.T01;_AED=0.42;_eAED=0.43;_QI=0|0|0|1|1|1|3|0|259
Chr1 exon 53758479 53758619 53758479 ID=MsG0180002955.01.T01:exon:47746;Parent=MsG0180002955.01.T01
Chr1 exon 53760840 53761370 53760840 ID=MsG0180002955.01.T01:exon:47747;Parent=MsG0180002955.01.T01
Chr1 exon 53762128 53762235 53762128 ID=MsG0180002955.01.T01:exon:47748;Parent=MsG0180002955.01.T01
Chr1 CDS 53758479 53758619 53758479 ID=MsG0180002955.01.T01:cds;Parent=MsG0180002955.01.T01
Chr1 CDS 53760840 53761370 53760840 ID=MsG0180002955.01.T01:cds;Parent=MsG0180002955.01.T01
Chr1 CDS 53762128 53762235 53762128 ID=MsG0180002955.01.T01:cds;Parent=MsG0180002955.01.T01
Gene Sequence

>MsG0180002955.01.T01

ATGATGGCTGAATCAACAACATCTATCAGGCAAAGCGATGATGATGATAACGATGACTACATGGCTGACCTTTCTAGGTTTCTTCCTTCCGATGATGCTATGATGCATCCTTCAATTTCAACTAAATCTTCATCAAAAAGGATTTCTGACAAGAAAGATCCTTCAATCAACTCTTCCAAGAGCCAATTGAAAGCTCTTAACTGGCAAGAACGGCGAAAAATTGAAAGAGAAAGAAAGCAAATACAAGAGGATGAACAAACCTTGGCAAAAGTGGAAGCTCCAATACCACAATCAAACATTGGATTTAAGCTTCTCAAACAGATGGGTTATACACCAGGTTCTGCCCTTGGCAAGCAGGGATCGGGCAGGGCTGAACCAGTGGGTATTGAAATTCGACGGTCACGAGCAGGTATAGGCCTAGAGGATCCCCACAAGGAGAAGAAGAAAAGGGAGGAAATCACGATCGACAGGAAAAGGAAGAATGAGCAGGCTCTGATGGAAGAATTCGGGTCAAGGCAGAAATCGCGATGGCAGAGTAGGAGAGTCATTGTTAATTTTAACAAGGCAAAGGCTACCCTTGACCAATTGGAGAATCGGGAAATTGTGGAACCACCGAAGAACGAGGATGATGCTGAGGGTGAAGATCAAGAAGAGGAAGAAATAACAGAAGAGGACTTGCTCGATGTATTAATGAAACTGAGGGATGAGTTCAATTACTGCCTCTTCTGTGGATGCAAAGTGAGTAAACATGAGTTATCTCTATCGTTTAATATAAACTAA

Protein sequence

>MsG0180002955.01.T01

MMAESTTSIRQSDDDDNDDYMADLSRFLPSDDAMMHPSISTKSSSKRISDKKDPSINSSKSQLKALNWQERRKIERERKQIQEDEQTLAKVEAPIPQSNIGFKLLKQMGYTPGSALGKQGSGRAEPVGIEIRRSRAGIGLEDPHKEKKKREEITIDRKRKNEQALMEEFGSRQKSRWQSRRVIVNFNKAKATLDQLENREIVEPPKNEDDAEGEDQEEEEITEEDLLDVLMKLRDEFNYCLFCGCKVSKHELSLSFNIN*