AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0080047957.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0080047957.01.T01 MTR_1g026830 96.774 124 4 0 165 288 468 591 1.66e-82 259
MsG0080047957.01.T01 MTR_1g026830 68.485 165 26 2 43 181 131 295 3.02e-65 214
MsG0080047957.01.T01 MTR_1g026830 93.023 43 3 0 1 43 5 47 1.82e-17 82.8
MsG0080047957.01.T01 MTR_1g095810 91.129 124 11 0 165 288 466 589 8.59e-77 244
MsG0080047957.01.T01 MTR_1g095810 68.902 164 25 2 44 181 130 293 2.35e-65 214
MsG0080047957.01.T01 MTR_2g100230 51.190 84 41 0 45 128 82 165 9.77e-21 92.0
MsG0080047957.01.T01 MTR_4g105100 38.095 126 56 3 1 118 150 261 3.22e-18 85.1
MsG0080047957.01.T01 MTR_4g105100 38.095 126 56 3 1 118 150 261 5.00e-18 84.3
MsG0080047957.01.T01 MTR_7g109720 52.564 78 37 0 46 123 219 296 2.06e-17 82.8
MsG0080047957.01.T01 MTR_3g083690 45.238 84 44 2 145 228 456 537 1.02e-16 80.5
MsG0080047957.01.T01 MTR_2g007000 50.000 70 35 0 48 117 493 562 7.70e-16 78.2
MsG0080047957.01.T01 MTR_4g134170 55.556 63 27 1 164 226 619 680 3.33e-15 75.9
MsG0080047957.01.T01 MTR_4g134170 39.189 74 45 0 44 117 272 345 2.06e-11 64.7
MsG0080047957.01.T01 MTR_6g005550 42.466 73 42 0 46 118 152 224 1.94e-14 73.9
MsG0080047957.01.T01 MTR_6g005550 53.968 63 28 1 166 228 480 541 1.40e-13 71.2
MsG0080047957.01.T01 MTR_1g054630 44.444 81 43 2 145 225 464 542 2.41e-14 73.6
MsG0080047957.01.T01 MTR_1g054630 36.364 77 49 0 48 124 143 219 2.94e-11 64.3
MsG0080047957.01.T01 MTR_6g005320 53.968 63 28 1 164 226 579 640 5.06e-14 72.4
MsG0080047957.01.T01 MTR_6g005320 41.892 74 43 0 44 117 234 307 4.24e-12 66.6
MsG0080047957.01.T01 MTR_4g114120 43.529 85 46 2 143 227 451 533 5.52e-14 72.4
MsG0080047957.01.T01 MTR_2g032630 41.558 77 45 0 46 122 483 559 3.95e-13 70.1
MsG0080047957.01.T01 MTR_5g027840 44.595 74 39 1 50 123 95 166 3.68e-12 66.6
MsG0080047957.01.T01 MTR_3g467550 42.857 70 40 0 54 123 112 181 1.45e-11 65.1
MsG0080047957.01.T01 MTR_3g467550 42.857 70 40 0 54 123 112 181 2.47e-11 64.3
MsG0080047957.01.T01 MTR_7g100820 41.026 78 42 1 45 118 116 193 5.03e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0080047957.01.T01 AT5G51280 84.677 124 19 0 165 288 468 591 2.70e-70 228
MsG0080047957.01.T01 AT5G51280 56.983 179 49 2 29 181 119 295 3.88e-56 190
MsG0080047957.01.T01 AT4G33370 77.419 124 28 0 165 288 419 542 4.82e-63 207
MsG0080047957.01.T01 AT4G33370 45.122 246 70 4 1 181 1 246 4.43e-57 192
MsG0080047957.01.T01 AT1G55150 51.807 83 38 1 36 118 79 159 5.28e-20 90.1
MsG0080047957.01.T01 AT1G55150 40.476 84 48 2 145 228 396 477 2.31e-12 67.4
MsG0080047957.01.T01 AT1G55150 51.807 83 38 1 36 118 104 184 6.70e-20 89.7
MsG0080047957.01.T01 AT1G55150 40.476 84 48 2 145 228 421 502 2.80e-12 67.0
MsG0080047957.01.T01 AT5G63120 53.425 73 34 0 46 118 153 225 2.21e-18 85.1
MsG0080047957.01.T01 AT5G63120 53.425 73 34 0 46 118 153 225 2.59e-18 85.1
MsG0080047957.01.T01 AT5G63120 53.425 73 34 0 46 118 153 225 2.59e-18 85.1
MsG0080047957.01.T01 AT5G63120 53.425 73 34 0 46 118 153 225 2.59e-18 85.1
MsG0080047957.01.T01 AT5G63120 53.425 73 34 0 46 118 153 225 2.74e-18 85.1
MsG0080047957.01.T01 AT5G63120 46.875 64 33 1 166 229 482 544 3.88e-12 67.0
MsG0080047957.01.T01 AT3G58510 46.914 81 41 2 145 225 460 538 2.57e-16 79.3
MsG0080047957.01.T01 AT3G58510 46.914 81 41 2 145 225 460 538 2.57e-16 79.3
MsG0080047957.01.T01 AT3G58510 46.914 81 41 2 145 225 460 538 2.57e-16 79.3
MsG0080047957.01.T01 AT2G47330 50.000 78 39 0 46 123 216 293 3.75e-16 79.0
MsG0080047957.01.T01 AT2G33730 55.556 63 27 1 164 226 646 707 8.87e-16 77.8
MsG0080047957.01.T01 AT2G33730 40.541 74 44 0 44 117 299 372 5.67e-12 66.6
MsG0080047957.01.T01 AT3G58570 46.914 81 41 2 145 225 457 535 9.78e-16 77.8
MsG0080047957.01.T01 AT2G42520 45.679 81 42 2 145 225 470 548 3.37e-15 75.9
MsG0080047957.01.T01 AT2G42520 45.679 81 42 2 145 225 470 548 3.37e-15 75.9
MsG0080047957.01.T01 AT2G42520 45.679 81 42 2 145 225 470 548 3.37e-15 75.9
MsG0080047957.01.T01 AT3G09620 34.286 140 75 3 45 167 383 522 1.06e-14 74.7
MsG0080047957.01.T01 AT3G09620 34.286 140 75 3 45 167 384 523 1.07e-14 74.7
MsG0080047957.01.T01 AT1G20920 49.315 73 37 0 45 117 516 588 2.40e-14 73.6
MsG0080047957.01.T01 AT1G20920 49.315 73 37 0 45 117 516 588 2.40e-14 73.6
MsG0080047957.01.T01 AT1G20920 49.315 73 37 0 45 117 516 588 2.40e-14 73.6
MsG0080047957.01.T01 AT1G20920 49.315 73 37 0 45 117 516 588 2.40e-14 73.6
MsG0080047957.01.T01 AT1G20920 49.315 73 37 0 45 117 516 588 2.40e-14 73.6
MsG0080047957.01.T01 AT1G20920 49.315 73 37 0 45 117 516 588 2.40e-14 73.6
MsG0080047957.01.T01 AT1G20920 51.429 70 34 0 48 117 181 250 6.40e-14 72.4
MsG0080047957.01.T01 AT3G01540 40.541 74 44 0 45 118 145 218 4.67e-13 69.7
MsG0080047957.01.T01 AT3G01540 42.857 84 46 2 145 228 454 535 1.61e-12 68.2
MsG0080047957.01.T01 AT3G01540 40.541 74 44 0 45 118 145 218 4.68e-13 69.7
MsG0080047957.01.T01 AT3G01540 42.857 84 46 2 145 228 454 535 1.56e-12 68.2
MsG0080047957.01.T01 AT3G01540 40.541 74 44 0 45 118 145 218 4.68e-13 69.7
MsG0080047957.01.T01 AT3G01540 42.857 84 46 2 145 228 454 535 1.56e-12 68.2
MsG0080047957.01.T01 AT3G01540 40.541 74 44 0 45 118 145 218 4.68e-13 69.7
MsG0080047957.01.T01 AT3G01540 42.857 84 46 2 145 228 454 535 1.56e-12 68.2
MsG0080047957.01.T01 AT3G09720 38.542 96 55 2 27 118 106 201 5.12e-13 69.3
MsG0080047957.01.T01 AT3G09720 38.542 96 55 2 27 118 106 201 5.12e-13 69.3
MsG0080047957.01.T01 AT1G28180 49.275 69 34 1 158 226 282 349 6.95e-13 68.6
MsG0080047957.01.T01 AT5G14610 49.206 63 31 1 166 228 477 538 1.91e-12 67.8
MsG0080047957.01.T01 AT5G14610 37.838 74 46 0 45 118 148 221 3.42e-12 67.0
MsG0080047957.01.T01 AT5G14610 49.206 63 31 1 166 228 477 538 1.93e-12 67.8
MsG0080047957.01.T01 AT5G14610 37.838 74 46 0 45 118 148 221 3.42e-12 67.0
MsG0080047957.01.T01 AT5G14610 49.206 63 31 1 166 228 485 546 2.05e-12 67.8
MsG0080047957.01.T01 AT5G14610 37.838 74 46 0 45 118 156 229 3.98e-12 67.0
MsG0080047957.01.T01 AT5G14610 49.206 63 31 1 166 228 545 606 2.39e-12 67.4
MsG0080047957.01.T01 AT5G14610 49.206 63 31 1 166 228 346 407 2.45e-12 67.4
MsG0080047957.01.T01 AT5G14610 49.206 63 31 1 166 228 346 407 2.45e-12 67.4
MsG0080047957.01.T01 AT5G14610 37.838 74 46 0 45 118 156 229 3.83e-12 66.6
MsG0080047957.01.T01 AT3G06480 40.541 74 44 0 46 119 423 496 1.66e-11 65.1
MsG0080047957.01.T01 AT3G06480 49.206 63 31 1 166 228 751 812 1.66e-11 65.1
MsG0080047957.01.T01 AT3G06480 40.541 74 44 0 46 119 423 496 1.93e-11 65.1
MsG0080047957.01.T01 AT1G31970 40.244 82 43 2 46 123 100 179 6.50e-11 63.2
MsG0080047957.01.T01 AT3G02065 40.506 79 46 1 39 117 92 169 7.91e-11 62.8
MsG0080047957.01.T01 AT3G02065 40.506 79 46 1 39 117 92 169 7.91e-11 62.8

Find 68 sgRNAs with CRISPR-Local

Find 163 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTATTATGACGTTCTAATTT+TGG 0.116059 contig152end:-362158 None:intergenic
GGAATTGCTTTCACGGGTTC+TGG 0.240475 contig152end:+361036 MsG0080047957.01.T01:CDS
TTGTTACCTTTGAAGGAATC+TGG 0.284937 contig152end:+361208 MsG0080047957.01.T01:intron
CTCAGACCTTTGCTTTGTAT+TGG 0.297978 contig152end:+361241 MsG0080047957.01.T01:CDS
TTTCTAGAATCATCATCTAT+TGG 0.306294 contig152end:-360585 None:intergenic
AATAATAGGAAGGATTGTTT+TGG 0.320959 contig152end:+362194 MsG0080047957.01.T01:CDS
GTGTGGCAAATGCAAATAAT+AGG 0.343166 contig152end:+362180 MsG0080047957.01.T01:CDS
TGTGCAGCCAACACCTATTC+AGG 0.343871 contig152end:+360972 MsG0080047957.01.T01:CDS
CAAGCAATGTTGTCTCAGTT+TGG 0.345951 contig152end:-361980 None:intergenic
TCAATCAGCTCAGCCAAAAC+AGG 0.376407 contig152end:-362044 None:intergenic
AATTACGATGCCTGTAGTTC+CGG 0.387134 contig152end:+361110 MsG0080047957.01.T01:CDS
GAGAATCTTCTGAGCTTTCA+TGG 0.389508 contig152end:-360538 None:intergenic
ACCGGAAGATGTGGCAAAAC+TGG 0.393311 contig152end:+361930 MsG0080047957.01.T01:CDS
AGACCTTTGCTTTGTATTGG+TGG 0.394935 contig152end:+361244 MsG0080047957.01.T01:CDS
TCCCTCCCAGATAAAATAAC+AGG 0.398029 contig152end:-361006 None:intergenic
GGAAGCCCTTGCACCTGAAT+AGG 0.407757 contig152end:-360985 None:intergenic
CACGGGTTCTGGCAAAACTT+TGG 0.414563 contig152end:+361047 MsG0080047957.01.T01:CDS
GAAAATTATGTCCATAGGAT+TGG 0.415181 contig152end:+361903 MsG0080047957.01.T01:CDS
AACATCTTCAAAATAGGATC+CGG 0.417452 contig152end:-360934 None:intergenic
TGCATTGCCATCATGATCAT+TGG 0.427490 contig152end:-361081 None:intergenic
AATGGAAGAAGATGATTATG+AGG 0.446862 contig152end:+360488 None:intergenic
ATTTCTTCATTATCTTCCAT+TGG 0.457806 contig152end:-362068 None:intergenic
TTCCGGTACGTCCAATCCTA+TGG 0.458107 contig152end:-361914 None:intergenic
ATGGCGCGACGCTTCGCCAC+AGG 0.469175 contig152end:-360519 None:intergenic
AATGATCATGATGGCAATGC+AGG 0.472381 contig152end:+361083 MsG0080047957.01.T01:CDS
TTATCTGGGAGGGATATGAT+TGG 0.476899 contig152end:+361015 MsG0080047957.01.T01:CDS
TATGATTGGAATTGCTTTCA+CGG 0.478341 contig152end:+361029 MsG0080047957.01.T01:CDS
TTTGAAGGAATCTGGATATC+CGG 0.481624 contig152end:+361216 MsG0080047957.01.T01:intron
GAAGAAATCACTGGCATAAG+TGG 0.482770 contig152end:+362083 MsG0080047957.01.T01:CDS
CAGATAATTTCCCTTTGCGT+TGG 0.485668 contig152end:-360560 None:intergenic
TGGACCTTCACCGGAACTAC+AGG 0.486249 contig152end:-361120 None:intergenic
TGTTGGCTGCACAATCCCCT+TGG 0.486336 contig152end:-360962 None:intergenic
TCCTTAAAATTCTTAATCGC+GGG 0.495673 contig152end:-360901 None:intergenic
AGTTCCGGTGAAGGTCCATT+TGG 0.499678 contig152end:+361125 MsG0080047957.01.T01:CDS
CAGTGGCATATAATTGTCAA+TGG 0.504194 contig152end:+360865 MsG0080047957.01.T01:intron
CACTGGCATAAGTGGTGTCA+AGG 0.508531 contig152end:+362091 MsG0080047957.01.T01:CDS
ATCCTTAAAATTCTTAATCG+CGG 0.511417 contig152end:-360902 None:intergenic
ACAGCTTGAGATTGTCAAGA+AGG 0.518951 contig152end:+361282 MsG0080047957.01.T01:CDS
ATGATTGGAATTGCTTTCAC+GGG 0.521318 contig152end:+361030 MsG0080047957.01.T01:CDS
CAAAGCAAAGGTCTGAGCTC+CGG 0.523344 contig152end:-361235 None:intergenic
CAGCTTGAGATTGTCAAGAA+GGG 0.528031 contig152end:+361283 MsG0080047957.01.T01:CDS
TTAAAATTCTTAATCGCGGG+TGG 0.532306 contig152end:-360898 None:intergenic
AAATTGAAAATTATGTCCAT+AGG 0.540038 contig152end:+361898 MsG0080047957.01.T01:CDS
AGAAGATTCTCCAACGCAAA+GGG 0.540048 contig152end:+360550 MsG0080047957.01.T01:CDS
GTCCATAGGATTGGACGTAC+CGG 0.544392 contig152end:+361912 MsG0080047957.01.T01:CDS
GGCTGAGCTGATTGATCCAA+TGG 0.544866 contig152end:+362052 MsG0080047957.01.T01:CDS
CAGACCAAATGGACCTTCAC+CGG 0.547678 contig152end:-361129 None:intergenic
GATGCCTGTAGTTCCGGTGA+AGG 0.550209 contig152end:+361116 MsG0080047957.01.T01:CDS
GAAGATAATGAAGAAATCAC+TGG 0.564788 contig152end:+362074 MsG0080047957.01.T01:CDS
AGCTTGAGATTGTCAAGAAG+GGG 0.576627 contig152end:+361284 MsG0080047957.01.T01:CDS
CAGAAGATTCTCCAACGCAA+AGG 0.577959 contig152end:+360549 MsG0080047957.01.T01:CDS
TGTGCTTCCAATGATCATGA+TGG 0.581752 contig152end:+361074 MsG0080047957.01.T01:CDS
TTTGGATCTGGAGGTTACAA+AGG 0.585574 contig152end:+362212 MsG0080047957.01.T01:CDS
CAATCAGCTCAGCCAAAACA+GGG 0.585774 contig152end:-362043 None:intergenic
GGCAAATGCAAATAATAGGA+AGG 0.588904 contig152end:+362184 MsG0080047957.01.T01:CDS
CCAACACCTATTCAGGTGCA+AGG 0.595863 contig152end:+360979 MsG0080047957.01.T01:CDS
ACTGGCATAAGTGGTGTCAA+GGG 0.604219 contig152end:+362092 MsG0080047957.01.T01:CDS
ATTGGACGTACCGGAAGATG+TGG 0.605046 contig152end:+361921 MsG0080047957.01.T01:CDS
CCTTGCACCTGAATAGGTGT+TGG 0.609165 contig152end:-360979 None:intergenic
CAACACCTATTCAGGTGCAA+GGG 0.626640 contig152end:+360980 MsG0080047957.01.T01:CDS
ATTAGAACGTCATAATAGTG+TGG 0.631530 contig152end:+362163 MsG0080047957.01.T01:CDS
ATTCCACCAATACAAAGCAA+AGG 0.634010 contig152end:-361247 None:intergenic
ATCAGCTCAGCCAAAACAGG+GGG 0.654999 contig152end:-362041 None:intergenic
GATCATGATGGCAATGCAGG+AGG 0.660735 contig152end:+361086 MsG0080047957.01.T01:CDS
GCTTGAGATTGTCAAGAAGG+GGG 0.666059 contig152end:+361285 MsG0080047957.01.T01:CDS
AATCAGCTCAGCCAAAACAG+GGG 0.693758 contig152end:-362042 None:intergenic
TTATGAGGAGTATATTCCTG+TGG 0.702818 contig152end:+360503 MsG0080047957.01.T01:CDS
TGATTCTAGAAAACTAAGTG+TGG 0.748043 contig152end:+360596 MsG0080047957.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTGAAAATTATGTCCAT+AGG + contig152end:361898-361917 MsG0080047957.01.T01:CDS 20.0%
!!! GTTTTTAACATCTTCAAAAT+AGG - contig152end:360943-360962 None:intergenic 20.0%
!!! TTAAGAATTTTAAGGATATG+AGG + contig152end:360908-360927 MsG0080047957.01.T01:CDS 20.0%
!!! TTTGATATTTTGTGAGAATA+AGG + contig152end:361670-361689 MsG0080047957.01.T01:intron 20.0%
! AAAACCTATTATTGTCAATG+TGG + contig152end:361539-361558 MsG0080047957.01.T01:intron 25.0%
! AAACCTATTATTGTCAATGT+GGG + contig152end:361540-361559 MsG0080047957.01.T01:intron 25.0%
! ATCCTTAAAATTCTTAATCG+CGG - contig152end:360905-360924 None:intergenic 25.0%
! ATTTCTTCATTATCTTCCAT+TGG - contig152end:362071-362090 None:intergenic 25.0%
! TGATAAAAAAACCCTTATGT+CGG + contig152end:360733-360752 MsG0080047957.01.T01:intron 25.0%
! TTCTCACAAAATATCAAAAC+AGG - contig152end:361668-361687 None:intergenic 25.0%
! TTGAAGATGTTAAAAACCAA+GGG + contig152end:360946-360965 MsG0080047957.01.T01:CDS 25.0%
! TTTGAAGATGTTAAAAACCA+AGG + contig152end:360945-360964 MsG0080047957.01.T01:CDS 25.0%
!! AATAATAGGAAGGATTGTTT+TGG + contig152end:362194-362213 MsG0080047957.01.T01:CDS 25.0%
!! ACATAATTTTCAATTTCAGC+AGG - contig152end:361894-361913 None:intergenic 25.0%
!! CTATTATGACGTTCTAATTT+TGG - contig152end:362161-362180 None:intergenic 25.0%
!! TATCAAGATTCATTTTCTTC+TGG - contig152end:361356-361375 None:intergenic 25.0%
!! TCTAGCAAAATTCTGAATTT+TGG - contig152end:361508-361527 None:intergenic 25.0%
!!! TTTCTAGAATCATCATCTAT+TGG - contig152end:360588-360607 None:intergenic 25.0%
AAAATATCAAAACAGGAGGT+GGG - contig152end:361661-361680 None:intergenic 30.0%
AACATCTTCAAAATAGGATC+CGG - contig152end:360937-360956 None:intergenic 30.0%
ACAATTCTTGTTACCTTTGA+AGG + contig152end:361201-361220 MsG0080047957.01.T01:intron 30.0%
ATTAGAACGTCATAATAGTG+TGG + contig152end:362163-362182 MsG0080047957.01.T01:CDS 30.0%
CTTATATCATCTTCAAATCC+CGG - contig152end:361423-361442 None:intergenic 30.0%
GAAAATTATGTCCATAGGAT+TGG + contig152end:361903-361922 MsG0080047957.01.T01:CDS 30.0%
GAAGATAATGAAGAAATCAC+TGG + contig152end:362074-362093 MsG0080047957.01.T01:CDS 30.0%
GTGATTTGATTCAAAAACAG+TGG + contig152end:360848-360867 MsG0080047957.01.T01:intron 30.0%
TATGATTGGAATTGCTTTCA+CGG + contig152end:361029-361048 MsG0080047957.01.T01:CDS 30.0%
TCACAAAATATCAAAACAGG+AGG - contig152end:361665-361684 None:intergenic 30.0%
TCCTTAAAATTCTTAATCGC+GGG - contig152end:360904-360923 None:intergenic 30.0%
TGAAGATGTTAAAAACCAAG+GGG + contig152end:360947-360966 MsG0080047957.01.T01:CDS 30.0%
TTAATGACATGCTGAATATC+AGG - contig152end:361861-361880 None:intergenic 30.0%
TTGTTCTTTCTTTAACTGTG+AGG - contig152end:360651-360670 None:intergenic 30.0%
! AAATGAATCTTGATAACTGC+AGG + contig152end:361361-361380 MsG0080047957.01.T01:intron 30.0%
! TGATTCTAGAAAACTAAGTG+TGG + contig152end:360596-360615 MsG0080047957.01.T01:CDS 30.0%
!! GCAAAATTCTGAATTTTGGT+TGG - contig152end:361504-361523 None:intergenic 30.0%
!! TTTTAAGGATATGAGGTTTC+CGG + contig152end:360915-360934 MsG0080047957.01.T01:CDS 30.0%
AAGCTCCTTTGCATATTAGA+AGG + contig152end:360809-360828 MsG0080047957.01.T01:intron 35.0%
AGTAGAGTATGTCAAACAAG+AGG + contig152end:361599-361618 MsG0080047957.01.T01:intron 35.0%
ATGATTGGAATTGCTTTCAC+GGG + contig152end:361030-361049 MsG0080047957.01.T01:CDS 35.0%
ATTCCACCAATACAAAGCAA+AGG - contig152end:361250-361269 None:intergenic 35.0%
CAAAATATCAAAACAGGAGG+TGG - contig152end:361662-361681 None:intergenic 35.0%
CAGGTATTTAACGTTAGATG+AGG + contig152end:361380-361399 MsG0080047957.01.T01:intron 35.0%
CAGTGGCATATAATTGTCAA+TGG + contig152end:360865-360884 MsG0080047957.01.T01:intron 35.0%
CATGAGTATCTTCTCTTGAA+AGG + contig152end:361710-361729 MsG0080047957.01.T01:intron 35.0%
GGACAAATAATCAGACCAAA+TGG - contig152end:361143-361162 None:intergenic 35.0%
GGCAAATGCAAATAATAGGA+AGG + contig152end:362184-362203 MsG0080047957.01.T01:CDS 35.0%
GTCATCCTTCTAATATGCAA+AGG - contig152end:360817-360836 None:intergenic 35.0%
GTGTGGCAAATGCAAATAAT+AGG + contig152end:362180-362199 MsG0080047957.01.T01:CDS 35.0%
TAATTCACGAACCGACATAA+GGG - contig152end:360747-360766 None:intergenic 35.0%
TACAGAACAGATTGTTCAAC+AGG + contig152end:360685-360704 MsG0080047957.01.T01:intron 35.0%
TATCAGGAAAATCCAAACCT+TGG - contig152end:361845-361864 None:intergenic 35.0%
TGTTCTGTAACACTAATCTC+AGG - contig152end:360674-360693 None:intergenic 35.0%
TTAAAATTCTTAATCGCGGG+TGG - contig152end:360901-360920 None:intergenic 35.0%
TTATTTGTCCATCGAGGAAT+TGG + contig152end:361153-361172 MsG0080047957.01.T01:intron 35.0%
TTGATCACTTCAAAGCTCAA+AGG + contig152end:361451-361470 MsG0080047957.01.T01:intron 35.0%
TTTGAAGGAATCTGGATATC+CGG + contig152end:361216-361235 MsG0080047957.01.T01:intron 35.0%
! ACCCGCGATTAAGAATTTTA+AGG + contig152end:360900-360919 MsG0080047957.01.T01:CDS 35.0%
! GCTATTTCGTCATTTAAGAC+TGG + contig152end:361785-361804 MsG0080047957.01.T01:intron 35.0%
! GTCATTTAAGACTGGAAAGA+AGG + contig152end:361793-361812 MsG0080047957.01.T01:intron 35.0%
! TCTGTTTTGCTTCTTGCAAA+AGG - contig152end:362016-362035 None:intergenic 35.0%
! TTATGAGGAGTATATTCCTG+TGG + contig152end:360503-360522 MsG0080047957.01.T01:CDS 35.0%
! TTGTTACCTTTGAAGGAATC+TGG + contig152end:361208-361227 MsG0080047957.01.T01:intron 35.0%
! TTTTGCAAGAAGCAAAACAG+AGG + contig152end:362015-362034 MsG0080047957.01.T01:CDS 35.0%
!!! GAATTTTGCTAGAAGTGCTT+TGG + contig152end:361515-361534 MsG0080047957.01.T01:intron 35.0%
!!! GGCTTCCTGTTATTTTATCT+GGG + contig152end:361001-361020 MsG0080047957.01.T01:CDS 35.0%
!!! TCCTGTTATTTTATCTGGGA+GGG + contig152end:361005-361024 MsG0080047957.01.T01:CDS 35.0%
!!! TTCCTGTTATTTTATCTGGG+AGG + contig152end:361004-361023 MsG0080047957.01.T01:CDS 35.0%
AATGATCATGATGGCAATGC+AGG + contig152end:361083-361102 MsG0080047957.01.T01:CDS 40.0%
AATTACGATGCCTGTAGTTC+CGG + contig152end:361110-361129 MsG0080047957.01.T01:CDS 40.0%
AATTCATGGAGACAAGGATC+AGG + contig152end:361748-361767 MsG0080047957.01.T01:intron 40.0%
ACAGCTTGAGATTGTCAAGA+AGG + contig152end:361282-361301 MsG0080047957.01.T01:CDS 40.0%
AGAAGATTCTCCAACGCAAA+GGG + contig152end:360550-360569 MsG0080047957.01.T01:CDS 40.0%
AGACCTTTGCTTTGTATTGG+TGG + contig152end:361244-361263 MsG0080047957.01.T01:CDS 40.0%
AGCTTGAGATTGTCAAGAAG+GGG + contig152end:361284-361303 MsG0080047957.01.T01:CDS 40.0%
ATAACGAACCATTGCCTACT+GGG + contig152end:360783-360802 MsG0080047957.01.T01:intron 40.0%
CAAGCAATGTTGTCTCAGTT+TGG - contig152end:361983-362002 None:intergenic 40.0%
CAGATAATTTCCCTTTGCGT+TGG - contig152end:360563-360582 None:intergenic 40.0%
CAGCTTGAGATTGTCAAGAA+GGG + contig152end:361283-361302 MsG0080047957.01.T01:CDS 40.0%
CGTCCCACATTGACAATAAT+AGG - contig152end:361546-361565 None:intergenic 40.0%
CTAATTCACGAACCGACATA+AGG - contig152end:360748-360767 None:intergenic 40.0%
CTCAGACCTTTGCTTTGTAT+TGG + contig152end:361241-361260 MsG0080047957.01.T01:CDS 40.0%
CTGATATTGCATCCAAGGTT+TGG + contig152end:361830-361849 MsG0080047957.01.T01:intron 40.0%
GAAGAAATCACTGGCATAAG+TGG + contig152end:362083-362102 MsG0080047957.01.T01:CDS 40.0%
GAGAATCTTCTGAGCTTTCA+TGG - contig152end:360541-360560 None:intergenic 40.0%
GGATATCCAGATTCCTTCAA+AGG - contig152end:361217-361236 None:intergenic 40.0%
GGCGAATCTTGATGTTATTC+AGG + contig152end:361575-361594 MsG0080047957.01.T01:intron 40.0%
GTATCTTCTCTTGAAAGGAG+TGG + contig152end:361715-361734 MsG0080047957.01.T01:intron 40.0%
GTCTGATTATTTGTCCATCG+AGG + contig152end:361147-361166 MsG0080047957.01.T01:intron 40.0%
TATAACGAACCATTGCCTAC+TGG + contig152end:360782-360801 MsG0080047957.01.T01:intron 40.0%
TCCCTCCCAGATAAAATAAC+AGG - contig152end:361009-361028 None:intergenic 40.0%
TGAGGCCTTAACAAGTAACT+GGG - contig152end:360633-360652 None:intergenic 40.0%
TGCAACTGATATTGCATCCA+AGG + contig152end:361825-361844 MsG0080047957.01.T01:intron 40.0%
TGCATTGCCATCATGATCAT+TGG - contig152end:361084-361103 None:intergenic 40.0%
TGTGCTTCCAATGATCATGA+TGG + contig152end:361074-361093 MsG0080047957.01.T01:CDS 40.0%
TTATCTGGGAGGGATATGAT+TGG + contig152end:361015-361034 MsG0080047957.01.T01:CDS 40.0%
TTTGGATCTGGAGGTTACAA+AGG + contig152end:362212-362231 MsG0080047957.01.T01:CDS 40.0%
! CTAAGCCCAGTTACTTGTTA+AGG + contig152end:360625-360644 MsG0080047957.01.T01:intron 40.0%
!!! AAGGATTGTTTTGGATCTGG+AGG + contig152end:362203-362222 MsG0080047957.01.T01:CDS 40.0%
!!! AGGAAGGATTGTTTTGGATC+TGG + contig152end:362200-362219 MsG0080047957.01.T01:CDS 40.0%
!!! GGGCTTCCTGTTATTTTATC+TGG + contig152end:361000-361019 MsG0080047957.01.T01:CDS 40.0%
AACATATCCTTCAACCTCCC+AGG - contig152end:361331-361350 None:intergenic 45.0%
AATCAGCTCAGCCAAAACAG+GGG - contig152end:362045-362064 None:intergenic 45.0%
AGACTGGAAAGAAGGATGTG+TGG + contig152end:361801-361820 MsG0080047957.01.T01:intron 45.0%
CAACACCTATTCAGGTGCAA+GGG + contig152end:360980-360999 MsG0080047957.01.T01:CDS 45.0%
CAATCAGCTCAGCCAAAACA+GGG - contig152end:362046-362065 None:intergenic 45.0%
CAGAAGATTCTCCAACGCAA+AGG + contig152end:360549-360568 MsG0080047957.01.T01:CDS 45.0%
CGGTTCGTGAATTAGCGAAA+GGG + contig152end:360753-360772 MsG0080047957.01.T01:intron 45.0%
CTTGTCTCCATGAATTGCCA+CGG - contig152end:361744-361763 None:intergenic 45.0%
GCTTGAGATTGTCAAGAAGG+GGG + contig152end:361285-361304 MsG0080047957.01.T01:CDS 45.0%
GTGAGGCCTTAACAAGTAAC+TGG - contig152end:360634-360653 None:intergenic 45.0%
GTTAGATGAGGCTGATCGAT+TGG + contig152end:361392-361411 MsG0080047957.01.T01:intron 45.0%
TCAATCAGCTCAGCCAAAAC+AGG - contig152end:362047-362066 None:intergenic 45.0%
TGGGAGGTTGAAGGATATGT+TGG + contig152end:361330-361349 MsG0080047957.01.T01:intron 45.0%
! ACCAGTTTTGCCACATCTTC+CGG - contig152end:361934-361953 None:intergenic 45.0%
! ACTGGCATAAGTGGTGTCAA+GGG + contig152end:362092-362111 MsG0080047957.01.T01:CDS 45.0%
! TCGGTTCGTGAATTAGCGAA+AGG + contig152end:360752-360771 MsG0080047957.01.T01:intron 45.0%
! TTTTCTGTAGGCACTCAAGG+AGG - contig152end:361638-361657 None:intergenic 45.0%
!! AAGGGATGTGCGTTTTGTTG+CGG + contig152end:362110-362129 MsG0080047957.01.T01:CDS 45.0%
ACATAGTTGTTGCCACGCCT+GGG + contig152end:361311-361330 MsG0080047957.01.T01:intron 50.0%
ACCGGAAGATGTGGCAAAAC+TGG + contig152end:361930-361949 MsG0080047957.01.T01:CDS 50.0%
AGTTCCGGTGAAGGTCCATT+TGG + contig152end:361125-361144 MsG0080047957.01.T01:CDS 50.0%
ATCAGCTCAGCCAAAACAGG+GGG - contig152end:362044-362063 None:intergenic 50.0%
ATTGGACGTACCGGAAGATG+TGG + contig152end:361921-361940 MsG0080047957.01.T01:CDS 50.0%
ATTGTCAATGTGGGACGTGC+AGG + contig152end:361549-361568 MsG0080047957.01.T01:intron 50.0%
CAAAGCAAAGGTCTGAGCTC+CGG - contig152end:361238-361257 None:intergenic 50.0%
CAGACCAAATGGACCTTCAC+CGG - contig152end:361132-361151 None:intergenic 50.0%
CCAACACCTATTCAGGTGCA+AGG + contig152end:360979-360998 MsG0080047957.01.T01:CDS 50.0%
CCTTGCACCTGAATAGGTGT+TGG - contig152end:360982-361001 None:intergenic 50.0%
CGTGGCAATTCATGGAGACA+AGG + contig152end:361742-361761 MsG0080047957.01.T01:intron 50.0%
GATCATGATGGCAATGCAGG+AGG + contig152end:361086-361105 MsG0080047957.01.T01:CDS 50.0%
GCTGATCGATTGGTAGATCC+GGG + contig152end:361402-361421 MsG0080047957.01.T01:intron 50.0%
GGAATTGCTTTCACGGGTTC+TGG + contig152end:361036-361055 MsG0080047957.01.T01:CDS 50.0%
GGCTGAGCTGATTGATCCAA+TGG + contig152end:362052-362071 MsG0080047957.01.T01:CDS 50.0%
GGCTGATCGATTGGTAGATC+CGG + contig152end:361401-361420 MsG0080047957.01.T01:intron 50.0%
GTCCATAGGATTGGACGTAC+CGG + contig152end:361912-361931 MsG0080047957.01.T01:CDS 50.0%
TGTGCAGCCAACACCTATTC+AGG + contig152end:360972-360991 MsG0080047957.01.T01:CDS 50.0%
TTCCGGTACGTCCAATCCTA+TGG - contig152end:361917-361936 None:intergenic 50.0%
TTGTCAATGTGGGACGTGCA+GGG + contig152end:361550-361569 MsG0080047957.01.T01:intron 50.0%
! ACAGAGGATTCCCCCTGTTT+TGG + contig152end:362031-362050 MsG0080047957.01.T01:CDS 50.0%
! CACGGGTTCTGGCAAAACTT+TGG + contig152end:361047-361066 MsG0080047957.01.T01:CDS 50.0%
! CACTGGCATAAGTGGTGTCA+AGG + contig152end:362091-362110 MsG0080047957.01.T01:CDS 50.0%
! GGGTTTTCTGTAGGCACTCA+AGG - contig152end:361641-361660 None:intergenic 50.0%
!! ACAGGAGGTGGGTTTTCTGT+AGG - contig152end:361650-361669 None:intergenic 50.0%
!! AGGGATGTGCGTTTTGTTGC+GGG + contig152end:362111-362130 MsG0080047957.01.T01:CDS 50.0%
ACGAACCATTGCCTACTGGG+TGG + contig152end:360786-360805 MsG0080047957.01.T01:intron 55.0%
AGCTTCCACCCAGTAGGCAA+TGG - contig152end:360794-360813 None:intergenic 55.0%
CAAAGGAGCTTCCACCCAGT+AGG - contig152end:360800-360819 None:intergenic 55.0%
CACATAGTTGTTGCCACGCC+TGG + contig152end:361310-361329 MsG0080047957.01.T01:intron 55.0%
CTTGAAAGGAGTGGAAGCCG+TGG + contig152end:361724-361743 MsG0080047957.01.T01:intron 55.0%
GATGCCTGTAGTTCCGGTGA+AGG + contig152end:361116-361135 MsG0080047957.01.T01:CDS 55.0%
GGAAGCCCTTGCACCTGAAT+AGG - contig152end:360988-361007 None:intergenic 55.0%
GTGGAAGCCGTGGCAATTCA+TGG + contig152end:361734-361753 MsG0080047957.01.T01:intron 55.0%
TGGACCTTCACCGGAACTAC+AGG - contig152end:361123-361142 None:intergenic 55.0%
TGTCAATGTGGGACGTGCAG+GGG + contig152end:361551-361570 MsG0080047957.01.T01:intron 55.0%
TGTCCATCGAGGAATTGGCG+AGG + contig152end:361158-361177 MsG0080047957.01.T01:intron 55.0%
TTGCCTCGCCAATTCCTCGA+TGG - contig152end:361164-361183 None:intergenic 55.0%
! TGTTGGCTGCACAATCCCCT+TGG - contig152end:360965-360984 None:intergenic 55.0%
!! TGTGCGTTTTGTTGCGGGCT+TGG + contig152end:362116-362135 MsG0080047957.01.T01:CDS 55.0%
ATCCTTCAACCTCCCAGGCG+TGG - contig152end:361326-361345 None:intergenic 60.0%
TAGTTGTTGCCACGCCTGGG+AGG + contig152end:361314-361333 MsG0080047957.01.T01:intron 60.0%
CAATGTGGGACGTGCAGGGG+CGG + contig152end:361554-361573 MsG0080047957.01.T01:intron 65.0%
TGCCACGCCTGGGAGGTTGA+AGG + contig152end:361321-361340 MsG0080047957.01.T01:intron 65.0%
ATGGCGCGACGCTTCGCCAC+AGG - contig152end:360522-360541 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
contig152end gene 360489 362244 360489 ID=MsG0080047957.01;Name=MsG0080047957.01
contig152end mRNA 360489 362244 360489 ID=MsG0080047957.01.T01;Parent=MsG0080047957.01;Name=MsG0080047957.01.T01;_AED=0.49;_eAED=0.50;_QI=0|0|0|1|1|1|4|0|288
contig152end exon 360489 360617 360489 ID=MsG0080047957.01.T01:exon:353;Parent=MsG0080047957.01.T01
contig152end exon 360868 361146 360868 ID=MsG0080047957.01.T01:exon:352;Parent=MsG0080047957.01.T01
contig152end exon 361223 361306 361223 ID=MsG0080047957.01.T01:exon:351;Parent=MsG0080047957.01.T01
contig152end exon 361870 362244 361870 ID=MsG0080047957.01.T01:exon:350;Parent=MsG0080047957.01.T01
contig152end CDS 360489 360617 360489 ID=MsG0080047957.01.T01:cds;Parent=MsG0080047957.01.T01
contig152end CDS 360868 361146 360868 ID=MsG0080047957.01.T01:cds;Parent=MsG0080047957.01.T01
contig152end CDS 361223 361306 361223 ID=MsG0080047957.01.T01:cds;Parent=MsG0080047957.01.T01
contig152end CDS 361870 362244 361870 ID=MsG0080047957.01.T01:cds;Parent=MsG0080047957.01.T01
Gene Sequence

>MsG0080047957.01.T01

ATGGAAGAAGATGATTATGAGGAGTATATTCCTGTGGCGAAGCGTCGCGCCATGAAAGCTCAGAAGATTCTCCAACGCAAAGGGAAATTATCTGCTCCAATAGATGATGATTCTAGAAAACTAAGTGTGTGGCATATAATTGTCAATGGTGAAGATATTCCACCCGCGATTAAGAATTTTAAGGATATGAGGTTTCCGGATCCTATTTTGAAGATGTTAAAAACCAAGGGGATTGTGCAGCCAACACCTATTCAGGTGCAAGGGCTTCCTGTTATTTTATCTGGGAGGGATATGATTGGAATTGCTTTCACGGGTTCTGGCAAAACTTTGGTTTTTGTGCTTCCAATGATCATGATGGCAATGCAGGAGGAAATTACGATGCCTGTAGTTCCGGTGAAGGTCCATTTGGAATCTGGATATCCGGAGCTCAGACCTTTGCTTTGTATTGGTGGAATTGATACGAGATCACAGCTTGAGATTGTCAAGAAGGGGCATGTCATTAACTACGACATGCCTGCTGAAATTGAAAATTATGTCCATAGGATTGGACGTACCGGAAGATGTGGCAAAACTGGTATAGCGACAACATTTATAAACAAGAACCAAACTGAGACAACATTGCTTGATTTGAAACACCTTTTGCAAGAAGCAAAACAGAGGATTCCCCCTGTTTTGGCTGAGCTGATTGATCCAATGGAAGATAATGAAGAAATCACTGGCATAAGTGGTGTCAAGGGATGTGCGTTTTGTTGCGGGCTTGGTCATCGTATGCGCGATTGTCCAAAATTAGAACGTCATAATAGTGTGGCAAATGCAAATAATAGGAAGGATTGTTTTGGATCTGGAGGTTACAAAGGAGAAATTTGA

Protein sequence

>MsG0080047957.01.T01

MEEDDYEEYIPVAKRRAMKAQKILQRKGKLSAPIDDDSRKLSVWHIIVNGEDIPPAIKNFKDMRFPDPILKMLKTKGIVQPTPIQVQGLPVILSGRDMIGIAFTGSGKTLVFVLPMIMMAMQEEITMPVVPVKVHLESGYPELRPLLCIGGIDTRSQLEIVKKGHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQTETTLLDLKHLLQEAKQRIPPVLAELIDPMEDNEEITGISGVKGCAFCCGLGHRMRDCPKLERHNSVANANNRKDCFGSGGYKGEI*