AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0080047944.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0080047944.01.T01 MTR_1g026830 94.152 171 10 0 2 172 395 565 2.55e-115 339
MsG0080047944.01.T01 MTR_1g095810 89.474 171 18 0 2 172 393 563 3.01e-110 326
MsG0080047944.01.T01 MTR_3g083690 48.031 127 65 1 12 138 412 537 8.73e-38 136
MsG0080047944.01.T01 MTR_1g054630 48.387 124 63 1 12 135 420 542 3.56e-35 129
MsG0080047944.01.T01 MTR_4g114120 48.413 126 64 1 12 137 409 533 1.58e-33 125
MsG0080047944.01.T01 MTR_6g005550 48.438 128 64 2 11 138 416 541 8.83e-33 123
MsG0080047944.01.T01 MTR_4g134170 47.154 123 64 1 14 136 559 680 1.04e-32 122
MsG0080047944.01.T01 MTR_6g005320 49.550 111 55 1 26 136 531 640 9.90e-32 120
MsG0080047944.01.T01 MTR_2g100230 43.411 129 72 1 10 138 346 473 1.36e-31 119
MsG0080047944.01.T01 MTR_4g105100 42.520 127 72 1 12 138 454 579 2.38e-31 119
MsG0080047944.01.T01 MTR_2g032630 50.926 108 52 1 31 138 766 872 2.05e-29 113
MsG0080047944.01.T01 MTR_3g467550 50.000 96 48 0 12 107 346 441 3.81e-29 112
MsG0080047944.01.T01 MTR_3g467550 50.000 96 48 0 12 107 377 472 5.04e-29 112
MsG0080047944.01.T01 MTR_5g027840 43.697 119 66 1 14 132 362 479 7.85e-27 105
MsG0080047944.01.T01 MTR_2g007000 42.276 123 70 1 18 140 764 885 1.39e-23 97.1
MsG0080047944.01.T01 MTR_7g100820 36.434 129 81 1 10 138 378 505 5.23e-23 95.1
MsG0080047944.01.T01 MTR_4g125970 39.252 107 64 1 33 139 308 413 5.90e-23 94.4
MsG0080047944.01.T01 MTR_4g125970 39.252 107 64 1 33 139 325 430 6.74e-23 94.4
MsG0080047944.01.T01 MTR_7g109720 46.000 100 53 1 14 112 486 585 1.09e-22 94.4
MsG0080047944.01.T01 MTR_2g039960 39.252 107 64 1 33 139 308 413 1.14e-22 93.6
MsG0080047944.01.T01 MTR_5g090120 42.202 109 62 1 7 115 328 435 3.44e-22 92.8
MsG0080047944.01.T01 MTR_3g449250 40.741 108 63 1 7 114 337 443 5.64e-22 92.0
MsG0080047944.01.T01 MTR_3g449250 40.741 108 63 1 7 114 337 443 6.27e-22 92.0
MsG0080047944.01.T01 MTR_6g082080 42.529 87 50 0 28 114 274 360 8.39e-22 91.3
MsG0080047944.01.T01 MTR_2g438110 34.074 135 88 1 5 139 273 406 9.41e-22 90.9
MsG0080047944.01.T01 MTR_7g056830 42.529 87 50 0 28 114 274 360 1.01e-21 90.9
MsG0080047944.01.T01 MTR_2g099620 37.383 107 66 1 33 139 292 397 2.09e-21 89.7
MsG0080047944.01.T01 MTR_2g099620 37.383 107 66 1 33 139 308 413 2.30e-21 89.7
MsG0080047944.01.T01 MTR_8g018400 36.449 107 67 1 33 139 308 413 3.01e-21 89.7
MsG0080047944.01.T01 MTR_2g043360 40.000 90 54 0 25 114 261 350 3.84e-21 89.7
MsG0080047944.01.T01 MTR_2g043360 40.000 90 54 0 25 114 379 468 4.92e-21 89.4
MsG0080047944.01.T01 MTR_4g059460 39.773 88 53 0 25 112 382 469 1.78e-20 87.8
MsG0080047944.01.T01 MTR_2g066050 45.122 82 45 0 30 111 322 403 3.47e-20 87.0
MsG0080047944.01.T01 MTR_4g079320 32.867 143 88 3 14 150 271 411 8.89e-20 85.9
MsG0080047944.01.T01 MTR_3g049990 37.903 124 72 2 26 144 418 541 2.06e-19 84.7
MsG0080047944.01.T01 MTR_6g033070 35.938 128 78 2 28 155 410 533 5.32e-19 83.6
MsG0080047944.01.T01 MTR_1g102410 41.346 104 57 2 10 113 319 418 6.86e-19 83.2
MsG0080047944.01.T01 MTR_6g056080 43.820 89 48 1 25 113 375 461 1.73e-18 82.0
MsG0080047944.01.T01 MTR_2g041140 44.578 83 46 0 26 108 408 490 1.98e-18 82.0
MsG0080047944.01.T01 MTR_4g010565 39.604 101 53 2 31 123 392 492 2.74e-18 81.6
MsG0080047944.01.T01 MTR_8g018370 30.935 139 95 1 1 139 187 324 5.54e-18 79.7
MsG0080047944.01.T01 MTR_3g071620 37.500 104 63 2 25 126 301 404 6.71e-18 80.5
MsG0080047944.01.T01 MTR_3g107420 43.038 79 45 0 31 109 315 393 3.44e-17 78.2
MsG0080047944.01.T01 MTR_1g012420 43.038 79 45 0 31 109 315 393 3.98e-17 78.2
MsG0080047944.01.T01 MTR_7g057250 32.520 123 83 0 10 132 481 603 1.52e-16 76.6
MsG0080047944.01.T01 MTR_3g467550 42.466 73 42 0 10 82 375 447 4.37e-16 75.1
MsG0080047944.01.T01 MTR_2g063080 36.047 86 55 0 27 112 429 514 1.26e-14 70.9
MsG0080047944.01.T01 MTR_1g061970 33.333 129 68 3 20 130 347 475 1.73e-14 70.5
MsG0080047944.01.T01 MTR_8g027775 40.580 69 41 0 34 102 389 457 2.35e-14 70.1
MsG0080047944.01.T01 MTR_4g049910 35.088 114 62 2 5 108 297 408 4.85e-14 69.3
MsG0080047944.01.T01 MTR_8g097000 43.478 69 39 0 34 102 575 643 5.96e-14 69.3
MsG0080047944.01.T01 MTR_8g027770 40.580 69 41 0 34 102 488 556 1.46e-13 68.2
MsG0080047944.01.T01 MTR_7g076800 32.143 112 75 1 28 139 401 511 1.97e-13 67.4
MsG0080047944.01.T01 MTR_7g076820 31.250 112 76 1 28 139 410 520 2.46e-13 67.4
MsG0080047944.01.T01 MTR_7g076830 31.250 112 76 1 28 139 403 513 2.65e-13 67.0
MsG0080047944.01.T01 MTR_8g027780 40.580 69 41 0 34 102 393 461 3.88e-13 66.6
MsG0080047944.01.T01 MTR_2g055850 37.931 87 51 2 25 108 356 442 6.34e-13 66.2
MsG0080047944.01.T01 MTR_1g046570 28.777 139 92 4 5 139 263 398 1.78e-12 64.7
MsG0080047944.01.T01 MTR_5g092560 35.632 87 55 1 28 113 346 432 3.14e-12 64.3
MsG0080047944.01.T01 MTR_5g077690 35.065 77 50 0 38 114 370 446 3.80e-12 63.9
MsG0080047944.01.T01 MTR_8g042690 33.333 90 59 1 20 108 280 369 4.17e-12 63.5
MsG0080047944.01.T01 MTR_8g062720 32.653 98 65 1 17 114 448 544 4.90e-12 63.5
MsG0080047944.01.T01 MTR_1g022305 37.838 74 43 1 40 113 223 293 7.12e-12 63.2
MsG0080047944.01.T01 MTR_5g069330 35.227 88 52 2 24 109 264 348 8.54e-12 62.8
MsG0080047944.01.T01 MTR_5g069330 35.227 88 52 2 24 109 268 352 8.66e-12 62.8
MsG0080047944.01.T01 MTR_4g112340 38.462 65 40 0 33 97 373 437 1.34e-11 62.4
MsG0080047944.01.T01 MTR_4g112320 38.462 65 40 0 33 97 191 255 1.52e-11 62.0
MsG0080047944.01.T01 MTR_5g092560 35.556 90 57 1 25 113 132 221 1.99e-11 61.6
MsG0080047944.01.T01 MTR_8g080160 35.556 90 58 0 11 100 499 588 2.63e-11 61.6
MsG0080047944.01.T01 MTR_6g039840 35.484 93 57 2 20 110 383 474 3.58e-11 61.2
MsG0080047944.01.T01 MTR_4g131750 35.714 70 45 0 28 97 373 442 4.52e-11 60.8
MsG0080047944.01.T01 MTR_6g039840 35.484 93 57 2 20 110 207 298 5.95e-11 60.5
MsG0080047944.01.T01 MTR_3g063040 33.654 104 66 1 3 106 230 330 6.50e-11 60.5
MsG0080047944.01.T02 MTR_1g026830 98.913 92 1 0 1 92 474 565 4.86e-61 195
MsG0080047944.01.T02 MTR_1g095810 93.478 92 6 0 1 92 472 563 5.63e-58 187
MsG0080047944.01.T02 MTR_3g083690 50.000 58 28 1 1 58 481 537 2.52e-13 63.9
MsG0080047944.01.T02 MTR_4g134170 51.786 56 26 1 1 56 626 680 1.06e-12 62.4
MsG0080047944.01.T02 MTR_6g005550 54.386 57 25 1 2 58 486 541 1.89e-12 61.6
MsG0080047944.01.T02 MTR_6g005320 50.000 56 27 1 1 56 586 640 2.20e-11 58.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0080047944.01.T01 AT5G51280 87.209 172 20 1 1 172 396 565 5.66e-105 312
MsG0080047944.01.T01 AT4G33370 83.140 172 27 1 1 172 347 516 1.04e-98 295
MsG0080047944.01.T01 AT3G58570 50.413 121 59 1 12 132 413 532 1.44e-38 139
MsG0080047944.01.T01 AT3G58510 49.587 121 60 1 12 132 416 535 1.01e-37 136
MsG0080047944.01.T01 AT3G58510 49.587 121 60 1 12 132 416 535 1.01e-37 136
MsG0080047944.01.T01 AT3G58510 49.587 121 60 1 12 132 416 535 1.01e-37 136
MsG0080047944.01.T01 AT2G42520 47.934 121 62 1 12 132 426 545 5.96e-37 134
MsG0080047944.01.T01 AT2G42520 47.934 121 62 1 12 132 426 545 5.96e-37 134
MsG0080047944.01.T01 AT2G42520 47.934 121 62 1 12 132 426 545 5.96e-37 134
MsG0080047944.01.T01 AT2G33730 47.154 123 64 1 14 136 586 707 3.84e-33 124
MsG0080047944.01.T01 AT1G55150 43.411 129 72 1 10 138 350 477 6.73e-33 122
MsG0080047944.01.T01 AT1G55150 44.094 127 70 1 12 138 377 502 1.12e-32 122
MsG0080047944.01.T01 AT5G63120 43.750 128 71 1 12 139 418 544 1.36e-32 122
MsG0080047944.01.T01 AT3G01540 50.926 108 52 1 31 138 429 535 4.31e-31 118
MsG0080047944.01.T01 AT3G01540 50.926 108 52 1 31 138 429 535 4.33e-31 118
MsG0080047944.01.T01 AT3G01540 50.926 108 52 1 31 138 429 535 4.33e-31 118
MsG0080047944.01.T01 AT3G01540 50.926 108 52 1 31 138 429 535 4.33e-31 118
MsG0080047944.01.T01 AT5G14610 48.246 114 58 1 25 138 434 546 9.19e-31 117
MsG0080047944.01.T01 AT5G14610 48.246 114 58 1 25 138 494 606 9.95e-31 117
MsG0080047944.01.T01 AT5G14610 48.246 114 58 1 25 138 426 538 1.08e-30 117
MsG0080047944.01.T01 AT5G14610 48.246 114 58 1 25 138 426 538 1.12e-30 117
MsG0080047944.01.T01 AT5G14610 43.885 139 75 3 1 138 271 407 2.66e-30 115
MsG0080047944.01.T01 AT5G14610 43.885 139 75 3 1 138 271 407 2.66e-30 115
MsG0080047944.01.T01 AT3G06480 50.000 108 53 1 31 138 706 812 7.51e-30 115
MsG0080047944.01.T01 AT1G31970 45.902 122 59 2 14 132 376 493 1.58e-28 110
MsG0080047944.01.T01 AT1G28180 47.573 103 53 1 34 136 248 349 5.04e-26 102
MsG0080047944.01.T01 AT2G47330 40.000 130 76 2 10 138 479 607 3.20e-25 101
MsG0080047944.01.T01 AT1G16280 38.298 141 80 2 29 169 327 460 5.26e-24 97.8
MsG0080047944.01.T01 AT1G20920 36.641 131 82 1 10 140 444 573 3.82e-23 95.9
MsG0080047944.01.T01 AT1G20920 36.641 131 82 1 10 140 782 911 6.97e-23 95.1
MsG0080047944.01.T01 AT1G20920 36.641 131 82 1 10 140 782 911 6.97e-23 95.1
MsG0080047944.01.T01 AT1G20920 36.641 131 82 1 10 140 782 911 6.97e-23 95.1
MsG0080047944.01.T01 AT1G20920 36.641 131 82 1 10 140 782 911 6.97e-23 95.1
MsG0080047944.01.T01 AT1G20920 36.641 131 82 1 10 140 782 911 6.97e-23 95.1
MsG0080047944.01.T01 AT1G20920 36.641 131 82 1 10 140 782 911 6.97e-23 95.1
MsG0080047944.01.T01 AT3G13920 37.383 107 66 1 33 139 297 402 7.71e-23 94.0
MsG0080047944.01.T01 AT3G13920 37.383 107 66 1 33 139 307 412 8.13e-23 94.0
MsG0080047944.01.T01 AT3G13920 37.383 107 66 1 33 139 302 407 8.16e-23 94.0
MsG0080047944.01.T01 AT3G22330 39.252 107 64 1 7 113 352 457 1.38e-22 94.0
MsG0080047944.01.T01 AT5G26742 35.664 143 90 2 12 154 359 499 5.02e-22 92.4
MsG0080047944.01.T01 AT5G26742 35.664 143 90 2 12 154 359 499 5.02e-22 92.4
MsG0080047944.01.T01 AT1G72730 36.449 107 67 1 33 139 309 414 7.10e-22 91.3
MsG0080047944.01.T01 AT5G26742 42.453 106 60 1 10 115 264 368 7.85e-22 92.0
MsG0080047944.01.T01 AT3G22310 40.367 109 64 1 7 115 364 471 9.24e-22 91.7
MsG0080047944.01.T01 AT3G22310 40.367 109 64 1 7 115 364 471 9.33e-22 91.7
MsG0080047944.01.T01 AT1G51380 33.846 130 82 1 10 139 267 392 9.57e-22 90.9
MsG0080047944.01.T01 AT1G54270 36.449 107 67 1 33 139 302 407 1.04e-21 90.9
MsG0080047944.01.T01 AT1G54270 36.449 107 67 1 33 139 307 412 1.07e-21 90.9
MsG0080047944.01.T01 AT4G16630 37.903 124 72 1 26 144 434 557 1.71e-21 90.9
MsG0080047944.01.T01 AT3G19760 32.593 135 90 1 5 139 275 408 1.80e-21 90.1
MsG0080047944.01.T01 AT5G60990 33.858 127 83 1 28 154 284 409 3.44e-21 89.7
MsG0080047944.01.T01 AT2G40700 50.667 75 37 0 34 108 380 454 3.47e-21 90.1
MsG0080047944.01.T01 AT3G13920 43.038 79 45 0 33 111 307 385 1.69e-20 87.4
MsG0080047944.01.T01 AT3G09720 41.667 96 56 0 12 107 388 483 1.70e-20 87.8
MsG0080047944.01.T01 AT3G09720 41.667 96 56 0 12 107 388 483 1.70e-20 87.8
MsG0080047944.01.T01 AT3G13920 43.038 79 45 0 33 111 311 389 1.73e-20 87.4
MsG0080047944.01.T01 AT1G77030 35.115 131 83 2 14 144 281 409 2.85e-20 87.4
MsG0080047944.01.T01 AT5G62190 41.379 87 51 0 33 119 375 461 2.30e-19 84.7
MsG0080047944.01.T01 AT5G11170 46.154 78 42 0 31 108 232 309 9.86e-19 82.0
MsG0080047944.01.T01 AT5G11200 46.154 78 42 0 31 108 374 451 1.69e-18 82.0
MsG0080047944.01.T01 AT5G11170 46.154 78 42 0 31 108 315 392 2.01e-18 81.6
MsG0080047944.01.T01 AT5G11200 46.154 78 42 0 31 108 315 392 2.01e-18 81.6
MsG0080047944.01.T01 AT5G11200 46.154 78 42 0 31 108 356 433 2.19e-18 81.6
MsG0080047944.01.T01 AT3G02065 35.965 114 72 1 25 138 242 354 4.81e-18 80.5
MsG0080047944.01.T01 AT3G02065 35.965 114 72 1 25 138 379 491 6.85e-18 80.5
MsG0080047944.01.T01 AT3G02065 35.965 114 72 1 25 138 379 491 6.85e-18 80.5
MsG0080047944.01.T01 AT1G71370 38.202 89 55 0 26 114 291 379 1.40e-17 79.7
MsG0080047944.01.T01 AT3G09620 41.111 90 52 1 43 132 654 742 5.02e-17 78.2
MsG0080047944.01.T01 AT3G09620 41.111 90 52 1 43 132 653 741 5.11e-17 78.2
MsG0080047944.01.T01 AT5G05450 40.964 83 49 0 26 108 300 382 6.44e-17 77.8
MsG0080047944.01.T01 AT3G53110 32.000 100 61 1 10 102 346 445 2.06e-14 70.5
MsG0080047944.01.T01 AT5G08620 30.370 135 85 3 34 165 368 496 2.55e-14 70.1
MsG0080047944.01.T01 AT5G08610 40.580 69 41 0 34 102 670 738 8.47e-14 68.9
MsG0080047944.01.T01 AT1G12770 32.292 96 65 0 17 112 420 515 1.04e-13 68.6
MsG0080047944.01.T01 AT1G12770 32.292 96 65 0 17 112 420 515 1.04e-13 68.6
MsG0080047944.01.T01 AT5G63630 40.580 69 41 0 34 102 342 410 1.38e-13 68.2
MsG0080047944.01.T01 AT1G63250 32.653 147 90 5 23 165 604 745 1.66e-13 67.8
MsG0080047944.01.T01 AT5G63630 40.580 69 41 0 34 102 536 604 2.07e-13 67.8
MsG0080047944.01.T01 AT5G19210 35.714 70 45 0 28 97 208 277 3.00e-13 66.6
MsG0080047944.01.T01 AT5G19210 35.714 70 45 0 28 97 208 277 3.00e-13 66.6
MsG0080047944.01.T01 AT5G19210 35.714 70 45 0 28 97 365 434 3.09e-13 67.0
MsG0080047944.01.T01 AT4G00660 29.231 130 91 1 10 139 374 502 3.82e-13 66.6
MsG0080047944.01.T01 AT4G00660 29.231 130 91 1 10 139 374 502 3.82e-13 66.6
MsG0080047944.01.T01 AT3G16840 29.808 104 73 0 10 113 508 611 4.26e-13 66.6
MsG0080047944.01.T01 AT3G18600 39.474 76 46 0 22 97 352 427 4.29e-13 66.6
MsG0080047944.01.T01 AT3G16840 29.808 104 73 0 10 113 509 612 4.35e-13 66.6
MsG0080047944.01.T01 AT2G07750 36.364 88 54 1 23 108 651 738 5.98e-13 66.2
MsG0080047944.01.T01 AT4G15850 34.524 84 55 0 29 112 363 446 1.47e-12 65.1
MsG0080047944.01.T01 AT3G61240 31.313 99 68 0 10 108 367 465 1.56e-12 65.1
MsG0080047944.01.T01 AT3G61240 31.313 99 68 0 10 108 367 465 1.56e-12 65.1
MsG0080047944.01.T01 AT2G45810 35.802 81 52 0 28 108 415 495 2.92e-12 64.3
MsG0080047944.01.T01 AT4G09730 35.484 93 57 2 20 110 386 477 8.04e-12 63.2
MsG0080047944.01.T02 AT5G51280 87.912 91 11 0 1 91 474 564 2.74e-53 174
MsG0080047944.01.T02 AT4G33370 82.418 91 16 0 1 91 425 515 1.71e-49 164
MsG0080047944.01.T02 AT3G58510 53.846 52 23 1 1 52 485 535 3.78e-13 63.5
MsG0080047944.01.T02 AT3G58510 53.846 52 23 1 1 52 485 535 3.78e-13 63.5
MsG0080047944.01.T02 AT3G58510 53.846 52 23 1 1 52 485 535 3.78e-13 63.5
MsG0080047944.01.T02 AT2G33730 51.786 56 26 1 1 56 653 707 5.48e-13 63.2
MsG0080047944.01.T02 AT3G58570 53.846 52 23 1 1 52 482 532 1.46e-12 62.0
MsG0080047944.01.T02 AT2G42520 51.923 52 24 1 1 52 495 545 6.78e-12 60.1
MsG0080047944.01.T02 AT2G42520 51.923 52 24 1 1 52 495 545 6.78e-12 60.1
MsG0080047944.01.T02 AT2G42520 51.923 52 24 1 1 52 495 545 6.78e-12 60.1

Find 37 sgRNAs with CRISPR-Local

Find 45 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTATTATGACGTTCTAATT+TGG 0.146762 contig152end:+143992 None:intergenic
CAAGCAATGTTGTCTCAGTT+TGG 0.345951 contig152end:+144170 None:intergenic
TGATATTGCATCCAAAGGTT+TGG 0.363188 contig152end:-144320 MsG0080047944.01.T01:CDS
TCAATCAGCTCAGCCAAAAC+AGG 0.376407 contig152end:+144106 None:intergenic
ACCGGAAGATGTGGCAAAAC+TGG 0.393311 contig152end:-144220 MsG0080047944.01.T01:CDS
TTAATGACATGCTGAATATC+AGG 0.397176 contig152end:+144292 None:intergenic
GTGGAAGCCGTGGCAATTCA+TGG 0.398757 contig152end:-144418 MsG0080047944.01.T01:CDS
ATCAGGAAAATCCAAACCTT+TGG 0.404652 contig152end:+144309 None:intergenic
GAAAATTATGTCCATAGGAT+TGG 0.415181 contig152end:-144247 MsG0080047944.01.T01:CDS
ATTCTCACAAATATCAAAAC+AGG 0.431224 contig152end:+144486 None:intergenic
GTCATTTAAGACTGGAAAGA+AGG 0.439351 contig152end:-144359 MsG0080047944.01.T01:CDS
ATTTCTTCATTATCTTCCAT+TGG 0.457806 contig152end:+144082 None:intergenic
TTCCGGTACGTCCAATCCTA+TGG 0.458107 contig152end:+144236 None:intergenic
GCTATTTCGTCATTTAAGAC+TGG 0.467758 contig152end:-144367 MsG0080047944.01.T01:CDS
ACAAATATCAAAACAGGAGG+TGG 0.475572 contig152end:+144492 None:intergenic
CATGAGTATCTTCTCTTGAA+AGG 0.476814 contig152end:-144442 MsG0080047944.01.T01:CDS
GAAGAAATCACTGGCATAAG+TGG 0.482770 contig152end:-144067 MsG0080047944.01.T01:CDS
CACTGGCATAAGTGGTGTCA+AGG 0.508531 contig152end:-144059 MsG0080047944.01.T01:CDS
AATTCATGGAGACAAGGATC+AGG 0.523834 contig152end:-144404 MsG0080047944.01.T01:CDS
CAAATATCAAAACAGGAGGT+GGG 0.524749 contig152end:+144493 None:intergenic
GACTGGAAAGAAGGATGTGT+TGG 0.532068 contig152end:-144350 MsG0080047944.01.T01:CDS
AAATTGAAAATTATGTCCAT+AGG 0.540038 contig152end:-144252 MsG0080047944.01.T01:CDS
GTCCATAGGATTGGACGTAC+CGG 0.544392 contig152end:-144238 MsG0080047944.01.T01:CDS
GGCTGAGCTGATTGATCCAA+TGG 0.544866 contig152end:-144098 MsG0080047944.01.T01:CDS
GCAACTGATATTGCATCCAA+AGG 0.548492 contig152end:-144325 MsG0080047944.01.T01:CDS
CTTGTCTCCATGAATTGCCA+CGG 0.563651 contig152end:+144411 None:intergenic
GAAGATAATGAAGAAATCAC+TGG 0.564788 contig152end:-144076 MsG0080047944.01.T01:CDS
CAATCAGCTCAGCCAAAACA+GGG 0.585774 contig152end:+144107 None:intergenic
AAATATCAAAACAGGAGGTG+GGG 0.603004 contig152end:+144494 None:intergenic
ACTGGCATAAGTGGTGTCAA+GGG 0.604219 contig152end:-144058 MsG0080047944.01.T01:CDS
CGTGGCAATTCATGGAGACA+AGG 0.604702 contig152end:-144410 MsG0080047944.01.T01:CDS
ATTGGACGTACCGGAAGATG+TGG 0.605046 contig152end:-144229 MsG0080047944.01.T01:CDS
GTATCTTCTCTTGAAAGGAG+TGG 0.613245 contig152end:-144437 MsG0080047944.01.T01:CDS
CTCACAAATATCAAAACAGG+AGG 0.641292 contig152end:+144489 None:intergenic
ATCAGCTCAGCCAAAACAGG+GGG 0.654999 contig152end:+144109 None:intergenic
CTTGAAAGGAGTGGAAGCCG+TGG 0.660852 contig152end:-144428 MsG0080047944.01.T01:CDS
AATCAGCTCAGCCAAAACAG+GGG 0.693758 contig152end:+144108 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTGAAAATTATGTCCAT+AGG - contig152end:144256-144275 MsG0080047944.01.T01:CDS 20.0%
!!! TTTTGATATTTGTGAGAATA+AGG - contig152end:144026-144045 MsG0080047944.01.T01:CDS 20.0%
! ATTCTCACAAATATCAAAAC+AGG + contig152end:144025-144044 None:intergenic 25.0%
! ATTTCTTCATTATCTTCCAT+TGG + contig152end:144429-144448 None:intergenic 25.0%
!! ACATAATTTTCAATTTCAGC+AGG + contig152end:144252-144271 None:intergenic 25.0%
GAAAATTATGTCCATAGGAT+TGG - contig152end:144261-144280 MsG0080047944.01.T01:CDS 30.0%
GAAGATAATGAAGAAATCAC+TGG - contig152end:144432-144451 MsG0080047944.01.T01:CDS 30.0%
TTAATGACATGCTGAATATC+AGG + contig152end:144219-144238 None:intergenic 30.0%
AAATATCAAAACAGGAGGTG+GGG + contig152end:144017-144036 None:intergenic 35.0%
ACAAATATCAAAACAGGAGG+TGG + contig152end:144019-144038 None:intergenic 35.0%
ATCAGGAAAATCCAAACCTT+TGG + contig152end:144202-144221 None:intergenic 35.0%
CAAATATCAAAACAGGAGGT+GGG + contig152end:144018-144037 None:intergenic 35.0%
CATGAGTATCTTCTCTTGAA+AGG - contig152end:144066-144085 MsG0080047944.01.T01:CDS 35.0%
CTCACAAATATCAAAACAGG+AGG + contig152end:144022-144041 None:intergenic 35.0%
TGATATTGCATCCAAAGGTT+TGG - contig152end:144188-144207 MsG0080047944.01.T01:CDS 35.0%
! GCTATTTCGTCATTTAAGAC+TGG - contig152end:144141-144160 MsG0080047944.01.T01:CDS 35.0%
! GTCATTTAAGACTGGAAAGA+AGG - contig152end:144149-144168 MsG0080047944.01.T01:CDS 35.0%
! TCTGTTTTGCTTCTTGCAAA+AGG + contig152end:144374-144393 None:intergenic 35.0%
! TTTTGCAAGAAGCAAAACAG+AGG - contig152end:144373-144392 MsG0080047944.01.T01:CDS 35.0%
AATTCATGGAGACAAGGATC+AGG - contig152end:144104-144123 MsG0080047944.01.T01:CDS 40.0%
CAAGCAATGTTGTCTCAGTT+TGG + contig152end:144341-144360 None:intergenic 40.0%
GAAGAAATCACTGGCATAAG+TGG - contig152end:144441-144460 MsG0080047944.01.T01:CDS 40.0%
GCAACTGATATTGCATCCAA+AGG - contig152end:144183-144202 MsG0080047944.01.T01:CDS 40.0%
GTATCTTCTCTTGAAAGGAG+TGG - contig152end:144071-144090 MsG0080047944.01.T01:CDS 40.0%
AATCAGCTCAGCCAAAACAG+GGG + contig152end:144403-144422 None:intergenic 45.0%
CAATCAGCTCAGCCAAAACA+GGG + contig152end:144404-144423 None:intergenic 45.0%
CTTGTCTCCATGAATTGCCA+CGG + contig152end:144100-144119 None:intergenic 45.0%
GACTGGAAAGAAGGATGTGT+TGG - contig152end:144158-144177 MsG0080047944.01.T01:CDS 45.0%
TCAATCAGCTCAGCCAAAAC+AGG + contig152end:144405-144424 None:intergenic 45.0%
! ACCAGTTTTGCCACATCTTC+CGG + contig152end:144292-144311 None:intergenic 45.0%
! ACTGGCATAAGTGGTGTCAA+GGG - contig152end:144450-144469 MsG0080047944.01.T01:CDS 45.0%
!! AAGGGATGTGCGTTTTGTTG+CGG - contig152end:144468-144487 MsG0080047944.01.T01:CDS 45.0%
ACCGGAAGATGTGGCAAAAC+TGG - contig152end:144288-144307 MsG0080047944.01.T01:CDS 50.0%
ATCAGCTCAGCCAAAACAGG+GGG + contig152end:144402-144421 None:intergenic 50.0%
ATTGGACGTACCGGAAGATG+TGG - contig152end:144279-144298 MsG0080047944.01.T01:CDS 50.0%
CGTGGCAATTCATGGAGACA+AGG - contig152end:144098-144117 MsG0080047944.01.T01:CDS 50.0%
GGCTGAGCTGATTGATCCAA+TGG - contig152end:144410-144429 MsG0080047944.01.T01:CDS 50.0%
GTCCATAGGATTGGACGTAC+CGG - contig152end:144270-144289 MsG0080047944.01.T01:CDS 50.0%
TTCCGGTACGTCCAATCCTA+TGG + contig152end:144275-144294 None:intergenic 50.0%
! ACAGAGGATTCCCCCTGTTT+TGG - contig152end:144389-144408 MsG0080047944.01.T01:CDS 50.0%
! CACTGGCATAAGTGGTGTCA+AGG - contig152end:144449-144468 MsG0080047944.01.T01:CDS 50.0%
!! AGGGATGTGCGTTTTGTTGC+GGG - contig152end:144469-144488 MsG0080047944.01.T01:CDS 50.0%
CTTGAAAGGAGTGGAAGCCG+TGG - contig152end:144080-144099 MsG0080047944.01.T01:CDS 55.0%
GTGGAAGCCGTGGCAATTCA+TGG - contig152end:144090-144109 MsG0080047944.01.T01:CDS 55.0%
!! TGTGCGTTTTGTTGCGGGCT+TGG - contig152end:144474-144493 MsG0080047944.01.T01:CDS 55.0%
Chromosome Type Strat End Strand Name
contig152end gene 144006 144524 144006 ID=MsG0080047944.01;Name=MsG0080047944.01
contig152end mRNA 144006 144524 144006 ID=MsG0080047944.01.T01;Parent=MsG0080047944.01;Name=MsG0080047944.01.T01;_AED=0.38;_eAED=0.38;_QI=0|-1|0|1|-1|1|1|0|172
contig152end exon 144006 144524 144006 ID=MsG0080047944.01.T01:exon:13685;Parent=MsG0080047944.01.T01
contig152end CDS 144006 144524 144006 ID=MsG0080047944.01.T01:cds;Parent=MsG0080047944.01.T01
contig152end mRNA 144006 144284 144006 ID=MsG0080047944.01.T02;Parent=MsG0080047944.01;Name=MsG0080047944.01.T02;_AED=0.43;_eAED=0.43;_QI=0|-1|0|1|-1|0|1|0|92
contig152end exon 144006 144284 144006 ID=MsG0080047944.01.T02:exon:13686;Parent=MsG0080047944.01.T02
contig152end CDS 144006 144284 144006 ID=MsG0080047944.01.T02:cds;Parent=MsG0080047944.01.T02
contig152end mRNA 144215 144421 144215 ID=MsG0080047944.01.T03;Parent=MsG0080047944.01;Name=MsG0080047944.01.T03;_AED=0.45;_eAED=0.45;_QI=0|-1|0|1|-1|0|1|0|68
contig152end exon 144215 144421 144215 ID=MsG0080047944.01.T03:exon:13687;Parent=MsG0080047944.01.T03
contig152end CDS 144215 144421 144215 ID=MsG0080047944.01.T03:cds;Parent=MsG0080047944.01.T03
Gene Sequence

>MsG0080047944.01.T01

ACAGAAAACCCCACCTCCTGTTTTGATATTTGTGAGAATAAGGCAGATGTCGATGACATTCATGAGTATCTTCTCTTGAAAGGAGTGGAAGCCGTGGCAATTCATGGAGACAAGGATCAGGAAGATAGAGAGTATGCTATTTCGTCATTTAAGACTGGAAAGAAGGATGTGTTGGTTGCAACTGATATTGCATCCAAAGGTTTGGATTTTCCTGATATTCAGCATGTCATTAACTACGACATGCCTGCTGAAATTGAAAATTATGTCCATAGGATTGGACGTACCGGAAGATGTGGCAAAACTGGTATAGCGACAACATTTATAAACAAGAACCAAACTGAGACAACATTGCTTGATTTGAAACACCTTTTGCAAGAAGCAAAACAGAGGATTCCCCCTGTTTTGGCTGAGCTGATTGATCCAATGGAAGATAATGAAGAAATCACTGGCATAAGTGGTGTCAAGGGATGTGCGTTTTGTTGCGGGCTTGGTCATCGTATGCGCGATTGTCCAAATTAG

>MsG0080047944.01.T02

ATGCCTGCTGAAATTGAAAATTATGTCCATAGGATTGGACGTACCGGAAGATGTGGCAAAACTGGTATAGCGACAACATTTATAAACAAGAACCAAACTGAGACAACATTGCTTGATTTGAAACACCTTTTGCAAGAAGCAAAACAGAGGATTCCCCCTGTTTTGGCTGAGCTGATTGATCCAATGGAAGATAATGAAGAAATCACTGGCATAAGTGGTGTCAAGGGATGTGCGTTTTGTTGCGGGCTTGGTCATCGTATGCGCGATTGTCCAAATTAG

>MsG0080047944.01.T03

ATGGAGACAAGGATCAGGAAGATAGAGAGTATGCTATTTCGTCATTTAAGACTGGAAAGAAGGATGTGTTGGTTGCAACTGATATTGCATCCAAAGGTTTGGATTTTCCTGATATTCAGCATGTCATTAACTACGACATGCCTGCTGAAATTGAAAATTATGTCCATAGGATTGGACGTACCGGAAGATGTGGCAAAACTGGTATAG

Protein sequence

>MsG0080047944.01.T01

TENPTSCFDICENKADVDDIHEYLLLKGVEAVAIHGDKDQEDREYAISSFKTGKKDVLVATDIASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQTETTLLDLKHLLQEAKQRIPPVLAELIDPMEDNEEITGISGVKGCAFCCGLGHRMRDCPN*

>MsG0080047944.01.T02

MPAEIENYVHRIGRTGRCGKTGIATTFINKNQTETTLLDLKHLLQEAKQRIPPVLAELIDPMEDNEEITGISGVKGCAFCCGLGHRMRDCPN*

>MsG0080047944.01.T03

METRIRKIESMLFRHLRLERRMCWLQLILHPKVWIFLIFSMSLTTTCLLKLKIMSIGLDVPEDVAKLV*