Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180003168.01.T01 | XP_013467790.1 | 93.863 | 277 | 12 | 1 | 42 | 318 | 181 | 452 | 7.97E-180 | 514 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180003168.01.T01 | Q9SJ62 | 55.914 | 186 | 64 | 5 | 55 | 235 | 201 | 373 | 2.09E-47 | 167 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180003168.01.T01 | A0A072VJ58 | 93.863 | 277 | 12 | 1 | 42 | 318 | 181 | 452 | 3.81e-180 | 514 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180003168.01 | MsG0180005188.01 | 0.827786 | 1.290848e-54 | 1.258786e-51 |
| MsG0180003168.01 | MsG0480021158.01 | 0.816578 | 5.145088e-52 | 3.659703e-49 |
| MsG0180003168.01 | MsG0480022738.01 | 0.801108 | 1.052110e-48 | 4.983052e-46 |
| MsG0180003168.01 | MsG0480023620.01 | 0.811900 | 5.554594e-51 | 3.480507e-48 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180003168.01.T01 | MTR_1g055085 | 93.863 | 277 | 12 | 1 | 42 | 318 | 181 | 452 | 0.0 | 514 |
| MsG0180003168.01.T01 | MTR_7g106750 | 52.158 | 278 | 86 | 6 | 44 | 318 | 188 | 421 | 7.19e-75 | 236 |
| MsG0180003168.01.T01 | MTR_1g012530 | 47.442 | 215 | 88 | 7 | 94 | 299 | 227 | 425 | 1.76e-40 | 147 |
| MsG0180003168.01.T01 | MTR_3g107050 | 46.040 | 202 | 81 | 5 | 94 | 271 | 210 | 407 | 3.54e-40 | 146 |
| MsG0180003168.01.T01 | MTR_1g012530 | 76.623 | 77 | 17 | 1 | 94 | 169 | 227 | 303 | 4.72e-31 | 119 |
| MsG0180003168.01.T01 | MTR_1g075310 | 61.290 | 93 | 35 | 1 | 92 | 183 | 213 | 305 | 2.11e-27 | 110 |
| MsG0180003168.01.T01 | MTR_1g080690 | 46.154 | 143 | 67 | 3 | 68 | 200 | 162 | 304 | 4.85e-25 | 103 |
| MsG0180003168.01.T01 | MTR_7g115310 | 56.989 | 93 | 39 | 1 | 92 | 183 | 208 | 300 | 1.40e-20 | 92.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180003168.01.T01 | AT2G35880 | 55.914 | 186 | 64 | 5 | 55 | 235 | 201 | 373 | 2.13e-48 | 167 |
| MsG0180003168.01.T01 | AT2G35880 | 55.914 | 186 | 64 | 5 | 55 | 235 | 201 | 373 | 2.13e-48 | 167 |
| MsG0180003168.01.T01 | AT2G35880 | 55.914 | 186 | 64 | 5 | 55 | 235 | 201 | 373 | 2.13e-48 | 167 |
| MsG0180003168.01.T01 | AT4G32330 | 69.231 | 91 | 27 | 1 | 94 | 183 | 205 | 295 | 2.66e-35 | 133 |
| MsG0180003168.01.T01 | AT4G32330 | 69.231 | 91 | 27 | 1 | 94 | 183 | 206 | 296 | 2.67e-35 | 133 |
| MsG0180003168.01.T01 | AT4G32330 | 69.231 | 91 | 27 | 1 | 94 | 183 | 206 | 296 | 2.67e-35 | 133 |
| MsG0180003168.01.T01 | AT4G32330 | 69.231 | 91 | 27 | 1 | 94 | 183 | 206 | 296 | 2.67e-35 | 133 |
| MsG0180003168.01.T01 | AT2G25480 | 70.330 | 91 | 26 | 1 | 94 | 183 | 181 | 271 | 6.52e-34 | 128 |
| MsG0180003168.01.T01 | AT2G25480 | 70.330 | 91 | 26 | 1 | 94 | 183 | 182 | 272 | 6.91e-34 | 128 |
| MsG0180003168.01.T01 | AT5G28646 | 48.120 | 133 | 66 | 2 | 51 | 180 | 37 | 169 | 4.41e-27 | 105 |
| MsG0180003168.01.T01 | AT5G28646 | 51.282 | 117 | 54 | 2 | 67 | 180 | 57 | 173 | 2.32e-26 | 103 |
| MsG0180003168.01.T01 | AT5G28646 | 51.282 | 117 | 54 | 2 | 67 | 180 | 57 | 173 | 2.32e-26 | 103 |
| MsG0180003168.01.T01 | AT3G23090 | 53.448 | 116 | 47 | 2 | 73 | 181 | 166 | 281 | 3.05e-25 | 103 |
| MsG0180003168.01.T01 | AT3G23090 | 53.448 | 116 | 47 | 2 | 73 | 181 | 167 | 282 | 3.29e-25 | 103 |
| MsG0180003168.01.T01 | AT3G04630 | 51.754 | 114 | 47 | 3 | 74 | 179 | 103 | 216 | 4.06e-25 | 102 |
| MsG0180003168.01.T01 | AT3G04630 | 51.754 | 114 | 47 | 3 | 74 | 179 | 98 | 211 | 4.10e-25 | 102 |
| MsG0180003168.01.T01 | AT3G04630 | 51.754 | 114 | 47 | 3 | 74 | 179 | 99 | 212 | 4.14e-25 | 102 |
| MsG0180003168.01.T01 | AT3G23090 | 53.448 | 116 | 47 | 2 | 73 | 181 | 202 | 317 | 6.66e-25 | 103 |
| MsG0180003168.01.T01 | AT3G23090 | 51.667 | 120 | 47 | 3 | 73 | 181 | 166 | 285 | 2.26e-24 | 101 |
| MsG0180003168.01.T01 | AT3G23090 | 51.667 | 120 | 47 | 3 | 73 | 181 | 202 | 321 | 3.51e-24 | 101 |
| MsG0180003168.01.T01 | AT1G54460 | 54.839 | 93 | 41 | 1 | 92 | 183 | 162 | 254 | 3.97e-21 | 92.4 |
| MsG0180003168.01.T01 | AT1G70950 | 52.439 | 82 | 32 | 2 | 79 | 157 | 313 | 390 | 1.89e-16 | 80.1 |
Find 66 sgRNAs with CRISPR-Local
Find 121 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCCAAGCTTTGGTGATTT+TGG | 0.061731 | 1:+57900319 | None:intergenic |
| TAGCTTCTTATTAAGAAATA+TGG | 0.189804 | 1:-57899632 | MsG0180003168.01.T01:three_prime_UTR |
| ATTCTTGTTCTATCCCATTC+TGG | 0.233527 | 1:+57899993 | None:intergenic |
| TAATGAAATAACTGGTAAAA+AGG | 0.248214 | 1:+57899840 | None:intergenic |
| ACTTCATACGATACAATTTC+TGG | 0.249662 | 1:+57899920 | None:intergenic |
| TTTCTGGTGCGGATGCATTT+AGG | 0.301252 | 1:+57899936 | None:intergenic |
| CCTTTGTTTCTTCCAAGCTT+TGG | 0.314245 | 1:+57900310 | None:intergenic |
| TCCAAAAGTTGAGCTGAAAA+AGG | 0.320761 | 1:-57900445 | MsG0180003168.01.T01:intron |
| TTCTATACTATCTACCAGTT+TGG | 0.320856 | 1:-57901462 | MsG0180003168.01.T01:CDS |
| TCAACCAAGGCAAAGGTAAA+AGG | 0.328570 | 1:-57900217 | MsG0180003168.01.T01:CDS |
| TCAAGCCAAGGTACAATCTA+AGG | 0.340660 | 1:-57900155 | MsG0180003168.01.T01:CDS |
| TCCAATGCCAAGTTTCTATA+AGG | 0.350934 | 1:-57900475 | MsG0180003168.01.T01:CDS |
| ATAGCTTCTTTACATTTCAT+TGG | 0.353797 | 1:-57901501 | MsG0180003168.01.T01:intron |
| CACAATAATAATGAAATAAC+TGG | 0.358013 | 1:+57899832 | None:intergenic |
| TGCCTCAAAAGTCTGGCTTT+TGG | 0.370248 | 1:+57901414 | None:intergenic |
| AGAAGAGAAAATTCAGGAAA+AGG | 0.396372 | 1:-57900698 | MsG0180003168.01.T01:CDS |
| ATTTCTTGATCTCTGCCTCT+TGG | 0.396749 | 1:+57900526 | None:intergenic |
| GGGTTTGAATTCTGATCAAC+AGG | 0.407116 | 1:+57901067 | None:intergenic |
| TTTCTCATGTGGGATAGAAC+TGG | 0.409624 | 1:+57900255 | None:intergenic |
| TTCTTCTGTTGTTTCTCATG+TGG | 0.415183 | 1:+57900244 | None:intergenic |
| CGCGGTCACGAAAACAGAAA+TGG | 0.415791 | 1:-57900128 | MsG0180003168.01.T01:CDS |
| TCTATACTATCTACCAGTTT+GGG | 0.416953 | 1:-57901461 | MsG0180003168.01.T01:CDS |
| ACATCGTCATCTTCTCTGTT+CGG | 0.419497 | 1:+57901028 | None:intergenic |
| ACATTGATGCCTCAAAAGTC+TGG | 0.423804 | 1:+57901407 | None:intergenic |
| TTTAGTATCACGTAAACATA+TGG | 0.426453 | 1:+57899576 | None:intergenic |
| CTCTGGATTCTCCTTCAGAT+TGG | 0.436792 | 1:-57900841 | MsG0180003168.01.T01:CDS |
| TCTTCTGTTGTTTCTCATGT+GGG | 0.442092 | 1:+57900245 | None:intergenic |
| GGTAAGAAGAGCAACGGCTC+TGG | 0.461766 | 1:-57900858 | MsG0180003168.01.T01:CDS |
| AGCACCGATGGGATTCTTAG+AGG | 0.465763 | 1:-57901707 | MsG0180003168.01.T01:CDS |
| ATATTTCTGAATACCAGAAT+GGG | 0.468042 | 1:-57900006 | MsG0180003168.01.T01:CDS |
| AATATTTCTGAATACCAGAA+TGG | 0.470112 | 1:-57900007 | MsG0180003168.01.T01:CDS |
| AATGGGTAGACCTCCCAAAC+TGG | 0.471966 | 1:+57901448 | None:intergenic |
| GAGCCGTTGCTCTTCTTACC+AGG | 0.472493 | 1:+57900861 | None:intergenic |
| CATTATTATTGTGAATATAG+AGG | 0.476292 | 1:-57899822 | MsG0180003168.01.T01:three_prime_UTR |
| TCCTTATAGAAACTTGGCAT+TGG | 0.483568 | 1:+57900474 | None:intergenic |
| AGCTCGTTCTTCCAATCTGA+AGG | 0.486684 | 1:+57900830 | None:intergenic |
| CGCCCAAAATCACCAAAGCT+TGG | 0.494610 | 1:-57900322 | MsG0180003168.01.T01:CDS |
| TAGTATAGAAGTAATGAGCA+TGG | 0.512817 | 1:+57901475 | None:intergenic |
| GGAGGTTCCTTATAGAAACT+TGG | 0.520048 | 1:+57900468 | None:intergenic |
| AAAGTTAGAAGAGAAAATTC+AGG | 0.529661 | 1:-57900704 | MsG0180003168.01.T01:CDS |
| AGTTTGGGAGGTCTACCCAT+TGG | 0.534429 | 1:-57901446 | MsG0180003168.01.T01:CDS |
| CCAAAGCTTGGAAGAAACAA+AGG | 0.558242 | 1:-57900310 | MsG0180003168.01.T01:CDS |
| TATTCAGAAATATTAACAGT+TGG | 0.567639 | 1:+57900016 | None:intergenic |
| GAATGATTCAACCAAGGCAA+AGG | 0.571396 | 1:-57900224 | MsG0180003168.01.T01:CDS |
| GTTGCTGCGGGAGTGTAGAT+TGG | 0.571695 | 1:-57899899 | MsG0180003168.01.T01:exon |
| GATTTCCTTAGATTGTACCT+TGG | 0.572341 | 1:+57900150 | None:intergenic |
| TGTCATGTCTTCCACAGACA+AGG | 0.577776 | 1:-57900101 | MsG0180003168.01.T01:CDS |
| GTATCGTATGAAGTTGCTGC+GGG | 0.583754 | 1:-57899911 | MsG0180003168.01.T01:CDS |
| AACAGTGTCCCTTCAATCAG+AGG | 0.584660 | 1:+57899668 | None:intergenic |
| ATACGATACAATTTCTGGTG+CGG | 0.587993 | 1:+57899925 | None:intergenic |
| GCTATCAGAAGTCTTACTCC+TGG | 0.593123 | 1:-57900879 | MsG0180003168.01.T01:intron |
| GCTATGAAGAAAAGCACCGA+TGG | 0.607394 | 1:-57901719 | MsG0180003168.01.T01:CDS |
| CAGTCCTCTAAGAATCCCAT+CGG | 0.609158 | 1:+57901703 | None:intergenic |
| ACGAGCTGAAAAGCGAAGAG+AGG | 0.612842 | 1:-57900814 | MsG0180003168.01.T01:intron |
| ACAGTGTCCCTTCAATCAGA+GGG | 0.613381 | 1:+57899669 | None:intergenic |
| ATACTATCTACCAGTTTGGG+AGG | 0.633632 | 1:-57901458 | MsG0180003168.01.T01:CDS |
| ATAGAACAAGAATCACAGAA+TGG | 0.634173 | 1:-57899983 | MsG0180003168.01.T01:CDS |
| CTATGAAGAAAAGCACCGAT+GGG | 0.637449 | 1:-57901718 | MsG0180003168.01.T01:CDS |
| GATTACTGAAACCTTGTCTG+TGG | 0.642412 | 1:+57900090 | None:intergenic |
| TGTATCGTATGAAGTTGCTG+CGG | 0.650295 | 1:-57899912 | MsG0180003168.01.T01:CDS |
| ACTCCTGGTAAGAAGAGCAA+CGG | 0.659089 | 1:-57900864 | MsG0180003168.01.T01:CDS |
| TAATCTGCAAGAGAAATCGA+AGG | 0.672615 | 1:-57900662 | MsG0180003168.01.T01:intron |
| GGTACAATCTAAGGAAATCG+CGG | 0.672899 | 1:-57900146 | MsG0180003168.01.T01:CDS |
| TCTTGCTCAAAACAGTGTGT+TGG | 0.673148 | 1:-57899960 | MsG0180003168.01.T01:CDS |
| ACAGAAGAATGATTCAACCA+AGG | 0.689453 | 1:-57900230 | MsG0180003168.01.T01:CDS |
| TTTCTGGCAGGAAAGCCAAG+AGG | 0.719137 | 1:-57900541 | MsG0180003168.01.T01:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAATCATATATATCTTT+AGG | - | Chr1:57900130-57900149 | MsG0180003168.01.T01:CDS | 10.0% |
| !!! | GATTTTAATTTAGTAAATAT+TGG | + | Chr1:57900070-57900089 | None:intergenic | 10.0% |
| !! | AAATACAACAGTATAAGAAA+TGG | + | Chr1:57900917-57900936 | None:intergenic | 20.0% |
| !! | ACCATAATTTATATACAGTT+TGG | + | Chr1:57899915-57899934 | None:intergenic | 20.0% |
| !! | CACAATAATAATGAAATAAC+TGG | + | Chr1:57901456-57901475 | None:intergenic | 20.0% |
| !! | CATTATTATTGTGAATATAG+AGG | - | Chr1:57901463-57901482 | MsG0180003168.01.T01:CDS | 20.0% |
| !! | CTTAAATATTATGTCTCATT+AGG | - | Chr1:57900310-57900329 | MsG0180003168.01.T01:CDS | 20.0% |
| !! | GAAATTTCATGAATCTATAT+AGG | + | Chr1:57900378-57900397 | None:intergenic | 20.0% |
| !! | TAATGAAATAACTGGTAAAA+AGG | + | Chr1:57901448-57901467 | None:intergenic | 20.0% |
| !! | TAGCTTCTTATTAAGAAATA+TGG | - | Chr1:57901653-57901672 | MsG0180003168.01.T01:intron | 20.0% |
| !! | TATAGAAAAAGAAGAAAGAA+TGG | + | Chr1:57900355-57900374 | None:intergenic | 20.0% |
| !! | TATTCAGAAATATTAACAGT+TGG | + | Chr1:57901272-57901291 | None:intergenic | 20.0% |
| !! | TCCAAACTGTATATAAATTA+TGG | - | Chr1:57899911-57899930 | MsG0180003168.01.T01:CDS | 20.0% |
| !! | TTCAATATCAATATGCTTTA+AGG | + | Chr1:57900509-57900528 | None:intergenic | 20.0% |
| !!! | TGAAAGTTGCATAATAATTT+TGG | + | Chr1:57899944-57899963 | None:intergenic | 20.0% |
| ! | AAAGTTAGAAGAGAAAATTC+AGG | - | Chr1:57900581-57900600 | MsG0180003168.01.T01:intron | 25.0% |
| ! | ATAGCTTCTTTACATTTCAT+TGG | - | Chr1:57899784-57899803 | MsG0180003168.01.T01:three_prime_UTR | 25.0% |
| ! | ATCAGACTATATATTGTTAG+AGG | + | Chr1:57900871-57900890 | None:intergenic | 25.0% |
| ! | TTTAGTATCACGTAAACATA+TGG | + | Chr1:57901712-57901731 | None:intergenic | 25.0% |
| !! | AATATTTCTGAATACCAGAA+TGG | - | Chr1:57901278-57901297 | MsG0180003168.01.T01:intron | 25.0% |
| !! | ATATTTCTGAATACCAGAAT+GGG | - | Chr1:57901279-57901298 | MsG0180003168.01.T01:intron | 25.0% |
| !! | CATACATATTTTGTTCCATA+TGG | - | Chr1:57900663-57900682 | MsG0180003168.01.T01:CDS | 25.0% |
| !! | TTTATATACAGTTTGGAGTT+TGG | + | Chr1:57899908-57899927 | None:intergenic | 25.0% |
| !!! | ATCTTTTTCCTTTTGATTTC+TGG | - | Chr1:57900728-57900747 | MsG0180003168.01.T01:intron | 25.0% |
| AATCAAAAAAACTCAAGCCA+AGG | - | Chr1:57901118-57901137 | MsG0180003168.01.T01:intron | 30.0% | |
| ACAATGGAAACTCTAAACAA+AGG | - | Chr1:57899681-57899700 | MsG0180003168.01.T01:three_prime_UTR | 30.0% | |
| ACTTCATACGATACAATTTC+TGG | + | Chr1:57901368-57901387 | None:intergenic | 30.0% | |
| AGAAAGTTTGACAAACTCAA+AGG | - | Chr1:57899646-57899665 | MsG0180003168.01.T01:three_prime_UTR | 30.0% | |
| AGAAGAGAAAATTCAGGAAA+AGG | - | Chr1:57900587-57900606 | MsG0180003168.01.T01:intron | 30.0% | |
| ATAGAACAAGAATCACAGAA+TGG | - | Chr1:57901302-57901321 | MsG0180003168.01.T01:intron | 30.0% | |
| ATGAACGAATTATGACCTTA+TGG | - | Chr1:57900176-57900195 | MsG0180003168.01.T01:CDS | 30.0% | |
| CAATGAAAACTCAAACCATA+TGG | + | Chr1:57900681-57900700 | None:intergenic | 30.0% | |
| GCAAAAACAAGTATAGTAGA+AGG | - | Chr1:57901227-57901246 | MsG0180003168.01.T01:intron | 30.0% | |
| TAGTATAGAAGTAATGAGCA+TGG | + | Chr1:57899813-57899832 | None:intergenic | 30.0% | |
| TCGTTCATCAGAAAATATGT+TGG | + | Chr1:57900164-57900183 | None:intergenic | 30.0% | |
| TCTATACTATCTACCAGTTT+GGG | - | Chr1:57899824-57899843 | MsG0180003168.01.T01:three_prime_UTR | 30.0% | |
| TTCTATACTATCTACCAGTT+TGG | - | Chr1:57899823-57899842 | MsG0180003168.01.T01:three_prime_UTR | 30.0% | |
| ! | CAATCTTAAATGCTAGTCTA+AGG | - | Chr1:57900089-57900108 | MsG0180003168.01.T01:CDS | 30.0% |
| !! | AAATAGCTTTAAAAGCTCTG+AGG | - | Chr1:57899720-57899739 | MsG0180003168.01.T01:three_prime_UTR | 30.0% |
| !! | CATATGGTTTGAGTTTTCAT+TGG | - | Chr1:57900679-57900698 | MsG0180003168.01.T01:CDS | 30.0% |
| !!! | CTATACTTGTTTTTGCATCT+TGG | + | Chr1:57901223-57901242 | None:intergenic | 30.0% |
| !!! | TTGGCTTGAGTTTTTTTGAT+TGG | + | Chr1:57901119-57901138 | None:intergenic | 30.0% |
| AAGGAGGCAAAAACAAACAA+TGG | - | Chr1:57899665-57899684 | MsG0180003168.01.T01:three_prime_UTR | 35.0% | |
| AAGTTTGACAAACTCAAAGG+AGG | - | Chr1:57899649-57899668 | MsG0180003168.01.T01:three_prime_UTR | 35.0% | |
| ACAGAAGAATGATTCAACCA+AGG | - | Chr1:57901055-57901074 | MsG0180003168.01.T01:CDS | 35.0% | |
| AGCATAATTGACCTCAATAG+TGG | - | Chr1:57899971-57899990 | MsG0180003168.01.T01:CDS | 35.0% | |
| ATTCTTGTTCTATCCCATTC+TGG | + | Chr1:57901295-57901314 | None:intergenic | 35.0% | |
| CTCATTAGGATATGAACTTG+CGG | - | Chr1:57900324-57900343 | MsG0180003168.01.T01:CDS | 35.0% | |
| CTGGATGAAAAGGATAACAT+AGG | + | Chr1:57900553-57900572 | None:intergenic | 35.0% | |
| GATTTCCTTAGATTGTACCT+TGG | + | Chr1:57901138-57901157 | None:intergenic | 35.0% | |
| TAATCTGCAAGAGAAATCGA+AGG | - | Chr1:57900623-57900642 | MsG0180003168.01.T01:intron | 35.0% | |
| TCCAAAAGTTGAGCTGAAAA+AGG | - | Chr1:57900840-57900859 | MsG0180003168.01.T01:CDS | 35.0% | |
| TCCAATGCCAAGTTTCTATA+AGG | - | Chr1:57900810-57900829 | MsG0180003168.01.T01:intron | 35.0% | |
| TCCTTATAGAAACTTGGCAT+TGG | + | Chr1:57900814-57900833 | None:intergenic | 35.0% | |
| TTGAGAAGAACTGGATGAAA+AGG | + | Chr1:57900563-57900582 | None:intergenic | 35.0% | |
| ! | CTTCTAACTTTGAGAAGAAC+TGG | + | Chr1:57900572-57900591 | None:intergenic | 35.0% |
| ! | TGTTTTTCCCTCTGATTGAA+GGG | - | Chr1:57901609-57901628 | MsG0180003168.01.T01:intron | 35.0% |
| !! | ATACGATACAATTTCTGGTG+CGG | + | Chr1:57901363-57901382 | None:intergenic | 35.0% |
| !! | TCTTCTGTTGTTTCTCATGT+GGG | + | Chr1:57901043-57901062 | None:intergenic | 35.0% |
| !! | TTCCAAGCTTTGGTGATTTT+GGG | + | Chr1:57900968-57900987 | None:intergenic | 35.0% |
| !! | TTCTTCTGTTGTTTCTCATG+TGG | + | Chr1:57901044-57901063 | None:intergenic | 35.0% |
| !! | TTTTTCAGCTCAACTTTTGG+AGG | + | Chr1:57900841-57900860 | None:intergenic | 35.0% |
| !!! | ACCTTTTTCAGCTCAACTTT+TGG | + | Chr1:57900844-57900863 | None:intergenic | 35.0% |
| !!! | TTTTCCTTTTGATTTCTGGC+AGG | - | Chr1:57900732-57900751 | MsG0180003168.01.T01:intron | 35.0% |
| AATATTGGGAGTCGTGATTG+CGG | + | Chr1:57900055-57900074 | None:intergenic | 40.0% | |
| ACATCGTCATCTTCTCTGTT+CGG | + | Chr1:57900260-57900279 | None:intergenic | 40.0% | |
| ACATTGATGCCTCAAAAGTC+TGG | + | Chr1:57899881-57899900 | None:intergenic | 40.0% | |
| ATACTATCTACCAGTTTGGG+AGG | - | Chr1:57899827-57899846 | MsG0180003168.01.T01:three_prime_UTR | 40.0% | |
| ATTTCTTGATCTCTGCCTCT+TGG | + | Chr1:57900762-57900781 | None:intergenic | 40.0% | |
| CAGTCATGTGGAAAACCATA+AGG | + | Chr1:57900194-57900213 | None:intergenic | 40.0% | |
| CCAAAGCTTGGAAGAAACAA+AGG | - | Chr1:57900975-57900994 | MsG0180003168.01.T01:intron | 40.0% | |
| CGCATTATGCCTCAATATCA+TGG | - | Chr1:57900005-57900024 | MsG0180003168.01.T01:CDS | 40.0% | |
| CTTTCCTGCCAGAAATCAAA+AGG | + | Chr1:57900739-57900758 | None:intergenic | 40.0% | |
| GAATGATTCAACCAAGGCAA+AGG | - | Chr1:57901061-57901080 | MsG0180003168.01.T01:CDS | 40.0% | |
| GATTACTGAAACCTTGTCTG+TGG | + | Chr1:57901198-57901217 | None:intergenic | 40.0% | |
| GGAGGTTCCTTATAGAAACT+TGG | + | Chr1:57900820-57900839 | None:intergenic | 40.0% | |
| GGGTTTGAATTCTGATCAAC+AGG | + | Chr1:57900221-57900240 | None:intergenic | 40.0% | |
| GGTACAATCTAAGGAAATCG+CGG | - | Chr1:57901139-57901158 | MsG0180003168.01.T01:intron | 40.0% | |
| TCAACCAAGGCAAAGGTAAA+AGG | - | Chr1:57901068-57901087 | MsG0180003168.01.T01:CDS | 40.0% | |
| TCAAGCCAAGGTACAATCTA+AGG | - | Chr1:57901130-57901149 | MsG0180003168.01.T01:intron | 40.0% | |
| TCTTGCTCAAAACAGTGTGT+TGG | - | Chr1:57901325-57901344 | MsG0180003168.01.T01:intron | 40.0% | |
| TGTATCGTATGAAGTTGCTG+CGG | - | Chr1:57901373-57901392 | MsG0180003168.01.T01:intron | 40.0% | |
| TTTCTCATGTGGGATAGAAC+TGG | + | Chr1:57901033-57901052 | None:intergenic | 40.0% | |
| ! | ATAGCCTTTTACCTTTGCCT+TGG | + | Chr1:57901075-57901094 | None:intergenic | 40.0% |
| ! | CCTTTGTTTCTTCCAAGCTT+TGG | + | Chr1:57900978-57900997 | None:intergenic | 40.0% |
| ! | GTGTTTTTCCCTCTGATTGA+AGG | - | Chr1:57901608-57901627 | MsG0180003168.01.T01:intron | 40.0% |
| ! | TGCCTCAATATCATGGATTG+TGG | - | Chr1:57900012-57900031 | MsG0180003168.01.T01:CDS | 40.0% |
| ! | TTTTGGCAACTGCAACCAAT+GGG | + | Chr1:57899857-57899876 | None:intergenic | 40.0% |
| !! | CTTCCAAGCTTTGGTGATTT+TGG | + | Chr1:57900969-57900988 | None:intergenic | 40.0% |
| AACAGATGCAGCCACTATTG+AGG | + | Chr1:57899985-57900004 | None:intergenic | 45.0% | |
| AACAGTGTCCCTTCAATCAG+AGG | + | Chr1:57901620-57901639 | None:intergenic | 45.0% | |
| ACAGTGTCCCTTCAATCAGA+GGG | + | Chr1:57901619-57901638 | None:intergenic | 45.0% | |
| ACTCCTGGTAAGAAGAGCAA+CGG | - | Chr1:57900421-57900440 | MsG0180003168.01.T01:intron | 45.0% | |
| AGCTCGTTCTTCCAATCTGA+AGG | + | Chr1:57900458-57900477 | None:intergenic | 45.0% | |
| CGCCACAATCCATGATATTG+AGG | + | Chr1:57900017-57900036 | None:intergenic | 45.0% | |
| CTCTGGATTCTCCTTCAGAT+TGG | - | Chr1:57900444-57900463 | MsG0180003168.01.T01:intron | 45.0% | |
| GCTATCAGAAGTCTTACTCC+TGG | - | Chr1:57900406-57900425 | MsG0180003168.01.T01:intron | 45.0% | |
| GTATCGTATGAAGTTGCTGC+GGG | - | Chr1:57901374-57901393 | MsG0180003168.01.T01:intron | 45.0% | |
| TGTCATGTCTTCCACAGACA+AGG | - | Chr1:57901184-57901203 | MsG0180003168.01.T01:intron | 45.0% | |
| ! | CAGTCCTCTAAGAATCCCAT+CGG | + | Chr1:57899585-57899604 | None:intergenic | 45.0% |
| ! | CTTTTGGCAACTGCAACCAA+TGG | + | Chr1:57899858-57899877 | None:intergenic | 45.0% |
| ! | TGCCAAAAGCCAGACTTTTG+AGG | - | Chr1:57899869-57899888 | MsG0180003168.01.T01:three_prime_UTR | 45.0% |
| ! | TTTCTGGTGCGGATGCATTT+AGG | + | Chr1:57901352-57901371 | None:intergenic | 45.0% |
| !! | TCGGCTTTTCACTTTTCGCA+GGG | + | Chr1:57900241-57900260 | None:intergenic | 45.0% |
| !! | TTCAGCTCAACTTTTGGAGG+AGG | + | Chr1:57900838-57900857 | None:intergenic | 45.0% |
| !! | TTCGGCTTTTCACTTTTCGC+AGG | + | Chr1:57900242-57900261 | None:intergenic | 45.0% |
| !!! | TGCCTCAAAAGTCTGGCTTT+TGG | + | Chr1:57899874-57899893 | None:intergenic | 45.0% |
| !!! | ATTTTAATTTAGTAAATATT+GGG | + | Chr1:57900069-57900088 | None:intergenic | 5.0% |
| AATGGGTAGACCTCCCAAAC+TGG | + | Chr1:57899840-57899859 | None:intergenic | 50.0% | |
| ACGAGCTGAAAAGCGAAGAG+AGG | - | Chr1:57900471-57900490 | MsG0180003168.01.T01:CDS | 50.0% | |
| AGTTTGGGAGGTCTACCCAT+TGG | - | Chr1:57899839-57899858 | MsG0180003168.01.T01:three_prime_UTR | 50.0% | |
| CGCCCAAAATCACCAAAGCT+TGG | - | Chr1:57900963-57900982 | MsG0180003168.01.T01:intron | 50.0% | |
| CGCGGTCACGAAAACAGAAA+TGG | - | Chr1:57901157-57901176 | MsG0180003168.01.T01:intron | 50.0% | |
| TCAACAGGTCTGCAGTCATG+TGG | + | Chr1:57900206-57900225 | None:intergenic | 50.0% | |
| ! | GGTGATTTTGGGCGTGTTGT+AGG | + | Chr1:57900957-57900976 | None:intergenic | 50.0% |
| ! | TTTCTGGCAGGAAAGCCAAG+AGG | - | Chr1:57900744-57900763 | MsG0180003168.01.T01:intron | 50.0% |
| !! | AGCACCGATGGGATTCTTAG+AGG | - | Chr1:57899578-57899597 | MsG0180003168.01.T01:three_prime_UTR | 50.0% |
| GAGCCGTTGCTCTTCTTACC+AGG | + | Chr1:57900427-57900446 | None:intergenic | 55.0% | |
| GGTAAGAAGAGCAACGGCTC+TGG | - | Chr1:57900427-57900446 | MsG0180003168.01.T01:intron | 55.0% | |
| ! | GTTGCTGCGGGAGTGTAGAT+TGG | - | Chr1:57901386-57901405 | MsG0180003168.01.T01:intron | 55.0% |
| GGGAGTCGTGATTGCGGTCG+TGG | + | Chr1:57900049-57900068 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr1 | gene | 57899569 | 57901738 | 57899569 | ID=MsG0180003168.01;Name=MsG0180003168.01 |
| Chr1 | mRNA | 57899569 | 57901738 | 57899569 | ID=MsG0180003168.01.T01;Parent=MsG0180003168.01;Name=MsG0180003168.01.T01;_AED=0.31;_eAED=0.31;_QI=0|0.83|0.71|1|0.83|0.71|7|335|318 |
| Chr1 | exon | 57899569 | 57900356 | 57899569 | ID=MsG0180003168.01.T01:exon:3597;Parent=MsG0180003168.01.T01 |
| Chr1 | exon | 57900446 | 57900553 | 57900446 | ID=MsG0180003168.01.T01:exon:3596;Parent=MsG0180003168.01.T01 |
| Chr1 | exon | 57900663 | 57900734 | 57900663 | ID=MsG0180003168.01.T01:exon:3595;Parent=MsG0180003168.01.T01 |
| Chr1 | exon | 57900815 | 57900893 | 57900815 | ID=MsG0180003168.01.T01:exon:3594;Parent=MsG0180003168.01.T01 |
| Chr1 | exon | 57901013 | 57901090 | 57901013 | ID=MsG0180003168.01.T01:exon:3593;Parent=MsG0180003168.01.T01 |
| Chr1 | exon | 57901409 | 57901519 | 57901409 | ID=MsG0180003168.01.T01:exon:3592;Parent=MsG0180003168.01.T01 |
| Chr1 | exon | 57901683 | 57901738 | 57901683 | ID=MsG0180003168.01.T01:exon:3591;Parent=MsG0180003168.01.T01 |
| Chr1 | CDS | 57901683 | 57901738 | 57901683 | ID=MsG0180003168.01.T01:cds;Parent=MsG0180003168.01.T01 |
| Chr1 | CDS | 57901409 | 57901519 | 57901409 | ID=MsG0180003168.01.T01:cds;Parent=MsG0180003168.01.T01 |
| Chr1 | CDS | 57901013 | 57901090 | 57901013 | ID=MsG0180003168.01.T01:cds;Parent=MsG0180003168.01.T01 |
| Chr1 | CDS | 57900815 | 57900893 | 57900815 | ID=MsG0180003168.01.T01:cds;Parent=MsG0180003168.01.T01 |
| Chr1 | CDS | 57900663 | 57900734 | 57900663 | ID=MsG0180003168.01.T01:cds;Parent=MsG0180003168.01.T01 |
| Chr1 | CDS | 57900446 | 57900553 | 57900446 | ID=MsG0180003168.01.T01:cds;Parent=MsG0180003168.01.T01 |
| Chr1 | CDS | 57899904 | 57900356 | 57899904 | ID=MsG0180003168.01.T01:cds;Parent=MsG0180003168.01.T01 |
| Chr1 | three_prime_UTR | 57899569 | 57899903 | 57899569 | ID=MsG0180003168.01.T01:three_prime_utr;Parent=MsG0180003168.01.T01 |
| Gene Sequence |
| Protein sequence |
