AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180003196.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180003196.01.T01 MTR_0055s0010 85.535 159 23 0 107 265 353 511 2.85e-94 290
MsG0180003196.01.T01 MTR_0052s0190 85.535 159 23 0 107 265 356 514 3.05e-94 290
MsG0180003196.01.T01 MTR_3g035670 83.648 159 26 0 107 265 102 260 1.60e-92 280
MsG0180003196.01.T01 MTR_4g051435 83.648 159 26 0 107 265 1232 1390 1.07e-86 285
MsG0180003196.01.T01 MTR_0689s0010 67.097 155 46 3 108 258 724 877 3.11e-54 190
MsG0180003196.01.T01 MTR_1g116170 50.307 163 23 4 1 106 1 162 3.83e-35 126
MsG0180003196.01.T01 MTR_1g116170 51.887 106 30 3 1 86 1 105 2.45e-22 91.7
MsG0180003196.01.T01 MTR_8g087850 76.000 50 10 1 115 162 1 50 7.44e-19 79.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180003196.01.T01 ATCG01280 65.806 155 48 3 108 258 2037 2190 8.12e-51 181
MsG0180003196.01.T01 ATCG00860 65.806 155 48 3 108 258 2037 2190 8.12e-51 181
MsG0180003196.01.T01 AT2G34860 85.965 57 8 0 50 106 121 177 1.85e-29 111
MsG0180003196.01.T01 AT2G34860 85.965 57 8 0 50 106 121 177 1.85e-29 111

Find 0 sgRNAs with CRISPR-Local

Find 300 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAAATAGAAATATTGTAT+TGG + Chr1:58220113-58220132 MsG0180003196.01.T01:intron 10.0%
!!! TAGATATTTCAATTTTTTTT+TGG - Chr1:58221148-58221167 None:intergenic 10.0%
!! TGAAATATCTAAATAAACAT+TGG + Chr1:58221157-58221176 MsG0180003196.01.T01:intron 15.0%
!! TTCTTCATATATATAGATAT+AGG - Chr1:58220331-58220350 None:intergenic 15.0%
!! TTGCTAAAAAAAAAAAGATA+CGG + Chr1:58219748-58219767 MsG0180003196.01.T01:intron 15.0%
!!! CACTATTTATTTTTTGTATA+TGG + Chr1:58222638-58222657 MsG0180003196.01.T01:intron 15.0%
!! AAAGAATTAAAGAAGTTAAG+AGG - Chr1:58219995-58220014 None:intergenic 20.0%
!! AAGAATTAAAGAAGTTAAGA+GGG - Chr1:58219994-58220013 None:intergenic 20.0%
!! AATGATGAATTTAAATCACA+TGG - Chr1:58222914-58222933 None:intergenic 20.0%
!! AGAAATATTGTATTGGAAAA+TGG + Chr1:58220120-58220139 MsG0180003196.01.T01:intron 20.0%
!! ATATATAGATATAGGATCTA+TGG - Chr1:58220323-58220342 None:intergenic 20.0%
!! ATTACAAAGAAATATGTTTG+AGG + Chr1:58221835-58221854 MsG0180003196.01.T01:intron 20.0%
!! CTCTATGAAAAATATGAATT+GGG + Chr1:58220711-58220730 MsG0180003196.01.T01:CDS 20.0%
!! CTTAACTTCTTTAATTCTTT+AGG + Chr1:58219995-58220014 MsG0180003196.01.T01:intron 20.0%
!! TCTATGAAAAATATGAATTG+GGG + Chr1:58220712-58220731 MsG0180003196.01.T01:CDS 20.0%
!! TCTCTATGAAAAATATGAAT+TGG + Chr1:58220710-58220729 MsG0180003196.01.T01:CDS 20.0%
!! TGCTAAAAAAAAAAAGATAC+GGG + Chr1:58219749-58219768 MsG0180003196.01.T01:intron 20.0%
!! TGTTATCATCAAAACTTAAA+GGG + Chr1:58222714-58222733 MsG0180003196.01.T01:intron 20.0%
!! TTGTTATCATCAAAACTTAA+AGG + Chr1:58222713-58222732 MsG0180003196.01.T01:intron 20.0%
!!! AATTAACAAGTTGACTTTTA+GGG + Chr1:58222814-58222833 MsG0180003196.01.T01:intron 20.0%
!!! ATACCATCATTTTTTTCATT+AGG - Chr1:58220495-58220514 None:intergenic 20.0%
!!! ATCTAAATAAACATTGGTTT+AGG + Chr1:58221163-58221182 MsG0180003196.01.T01:intron 20.0%
!!! CCATTTTGAATCATATTTAT+GGG - Chr1:58220663-58220682 None:intergenic 20.0%
!!! TAATTAACAAGTTGACTTTT+AGG + Chr1:58222813-58222832 MsG0180003196.01.T01:intron 20.0%
!!! TACTACTTTTCATTTCATTT+AGG + Chr1:58219489-58219508 MsG0180003196.01.T01:intron 20.0%
!!! TCCATTTTGAATCATATTTA+TGG - Chr1:58220664-58220683 None:intergenic 20.0%
!!! TGATAAATATTGATAACTCT+CGG - Chr1:58221292-58221311 None:intergenic 20.0%
!!! TTCATTTGATAATGAACTAT+TGG - Chr1:58221247-58221266 None:intergenic 20.0%
!!! TTTAAGTTTTGATGATAACA+AGG - Chr1:58222714-58222733 None:intergenic 20.0%
! AAAGAATGAGAAAAGATAAG+AGG - Chr1:58219417-58219436 None:intergenic 25.0%
! AACAATTAGAAATTCTGTTC+TGG - Chr1:58221198-58221217 None:intergenic 25.0%
! AAGAAGAAATCATGTAACAA+GGG + Chr1:58220346-58220365 MsG0180003196.01.T01:intron 25.0%
! AAGACACAAAGCAATTATAT+AGG + Chr1:58221598-58221617 MsG0180003196.01.T01:intron 25.0%
! AATAGATCTTTCAAAGAACA+AGG + Chr1:58220984-58221003 MsG0180003196.01.T01:CDS 25.0%
! ATATCATATGATATGAATGC+AGG + Chr1:58219368-58219387 MsG0180003196.01.T01:intron 25.0%
! ATTTATTCAGTCACATAGTT+TGG + Chr1:58220775-58220794 MsG0180003196.01.T01:CDS 25.0%
! CATAGAGAAATTTATGATCA+AGG - Chr1:58220698-58220717 None:intergenic 25.0%
! CCCATAAATATGATTCAAAA+TGG + Chr1:58220660-58220679 MsG0180003196.01.T01:CDS 25.0%
! CTAGATCAGAATCATTATAA+AGG - Chr1:58220533-58220552 None:intergenic 25.0%
! CTTGGGGTTAATTTAATAAA+GGG + Chr1:58220051-58220070 MsG0180003196.01.T01:intron 25.0%
! GAAGAATATGATATTTGTTC+CGG - Chr1:58219443-58219462 None:intergenic 25.0%
! TGTGAAAACACATATACAAA+AGG - Chr1:58221077-58221096 None:intergenic 25.0%
! TTTATTCAGTCACATAGTTT+GGG + Chr1:58220776-58220795 MsG0180003196.01.T01:CDS 25.0%
!! ACTTTTCTATCAGATAAGAA+GGG + Chr1:58220264-58220283 MsG0180003196.01.T01:intron 25.0%
!! TACTTTTCTATCAGATAAGA+AGG + Chr1:58220263-58220282 MsG0180003196.01.T01:intron 25.0%
!! TATTTGATGATTGTATCGAA+AGG + Chr1:58220829-58220848 MsG0180003196.01.T01:CDS 25.0%
!! TTAAAGTACTATTAGACTCA+GGG - Chr1:58222859-58222878 None:intergenic 25.0%
!!! ATCATTTTTTTCATTAGGTC+CGG - Chr1:58220490-58220509 None:intergenic 25.0%
AAAAAAAAAAAGATACGGGC+CGG + Chr1:58219753-58219772 MsG0180003196.01.T01:intron 30.0%
AAAGAAGTTAAGAGGGTTAA+AGG - Chr1:58219987-58220006 None:intergenic 30.0%
AAAGAGATTATGAAGACAAG+AGG - Chr1:58222540-58222559 None:intergenic 30.0%
AACACTTGATATACAATCAG+TGG + Chr1:58221861-58221880 MsG0180003196.01.T01:intron 30.0%
ACTGAATGTCCTAATTGTTA+TGG + Chr1:58219587-58219606 MsG0180003196.01.T01:CDS 30.0%
ACTTCTTCTATCAAACAAAC+AGG + Chr1:58219206-58219225 MsG0180003196.01.T01:CDS 30.0%
AGAAGAAATCATGTAACAAG+GGG + Chr1:58220347-58220366 MsG0180003196.01.T01:intron 30.0%
AGACATTGTTGAGAAAAAGA+TGG + Chr1:58221355-58221374 MsG0180003196.01.T01:intron 30.0%
AGTGTTTGTCATCATCAAAA+AGG - Chr1:58222774-58222793 None:intergenic 30.0%
ATAGGGAAATCCAAATTCAT+TGG - Chr1:58220856-58220875 None:intergenic 30.0%
ATCATATTTATGGGATTCCA+TGG - Chr1:58220654-58220673 None:intergenic 30.0%
ATGAATTTGGATTTCCCTAT+TGG + Chr1:58220856-58220875 MsG0180003196.01.T01:CDS 30.0%
ATGGAGTAACATTTCTTCTT+AGG + Chr1:58220622-58220641 MsG0180003196.01.T01:intron 30.0%
ATTCTAAGTGAACTTTGATG+TGG + Chr1:58221954-58221973 MsG0180003196.01.T01:intron 30.0%
CAAACAATAAAGGTCTTCTT+AGG + Chr1:58219654-58219673 MsG0180003196.01.T01:CDS 30.0%
CAATGCAAACATACTACTTA+TGG + Chr1:58220192-58220211 MsG0180003196.01.T01:intron 30.0%
CAGATCATTTATGATGAAGA+GGG + Chr1:58220900-58220919 MsG0180003196.01.T01:CDS 30.0%
CATAAGTAGTATGTTTGCAT+TGG - Chr1:58220194-58220213 None:intergenic 30.0%
CATATACAAAAGGATCATCT+TGG - Chr1:58221067-58221086 None:intergenic 30.0%
CATCAAATAGAAATTCCCAA+AGG - Chr1:58220818-58220837 None:intergenic 30.0%
CTAAGAAGACCTTTATTGTT+TGG - Chr1:58219656-58219675 None:intergenic 30.0%
CTGAACAGTAATTTCAACTT+AGG - Chr1:58221467-58221486 None:intergenic 30.0%
CTGAGTCTAATAGTACTTTA+AGG + Chr1:58222858-58222877 MsG0180003196.01.T01:intron 30.0%
CTGCTTGATAAGATGTATAA+TGG + Chr1:58219695-58219714 MsG0180003196.01.T01:intron 30.0%
CTTTGTAATTTGAGCCAATA+GGG - Chr1:58221337-58221356 None:intergenic 30.0%
GAAGAAGAAATCATGTAACA+AGG + Chr1:58220345-58220364 MsG0180003196.01.T01:intron 30.0%
GAATGATTTAGATTTCTTGC+AGG + Chr1:58220935-58220954 MsG0180003196.01.T01:CDS 30.0%
GCTTGGGGTTAATTTAATAA+AGG + Chr1:58220050-58220069 MsG0180003196.01.T01:intron 30.0%
GGACCTAATGAAAAAAATGA+TGG + Chr1:58220489-58220508 MsG0180003196.01.T01:intron 30.0%
GTATATAAACATACACACCT+TGG - Chr1:58219297-58219316 None:intergenic 30.0%
GTGTTTGTCATCATCAAAAA+GGG - Chr1:58222773-58222792 None:intergenic 30.0%
GTTTGTTTGATAGAAGAAGT+TGG - Chr1:58219206-58219225 None:intergenic 30.0%
TAATATTTGTTCAAGTGTGC+AGG - Chr1:58222665-58222684 None:intergenic 30.0%
TCAAATCTGTTCCTATCTAA+TGG + Chr1:58221309-58221328 MsG0180003196.01.T01:intron 30.0%
TCGAATAAGCCAATTCATTT+GGG + Chr1:58221013-58221032 MsG0180003196.01.T01:CDS 30.0%
TCTTTGTAATTTGAGCCAAT+AGG - Chr1:58221338-58221357 None:intergenic 30.0%
TGAATTTGGATTTCCCTATT+GGG + Chr1:58220857-58220876 MsG0180003196.01.T01:CDS 30.0%
TGTTTGTCATCATCAAAAAG+GGG - Chr1:58222772-58222791 None:intergenic 30.0%
TTCGAATAAGCCAATTCATT+TGG + Chr1:58221012-58221031 MsG0180003196.01.T01:CDS 30.0%
TTGATTTACTTCTTGAGCAT+AGG - Chr1:58221765-58221784 None:intergenic 30.0%
TTTCATTTAGGTGATATGTG+TGG + Chr1:58219501-58219520 MsG0180003196.01.T01:intron 30.0%
TTTCTTCGACCATAACAATT+AGG - Chr1:58219599-58219618 None:intergenic 30.0%
! AATGATTCTGATCTAGTTCA+TGG + Chr1:58220537-58220556 MsG0180003196.01.T01:intron 30.0%
! ATTTGAAATTGATCCTTCAG+AGG - Chr1:58222158-58222177 None:intergenic 30.0%
! CTTAAAGTACTATTAGACTC+AGG - Chr1:58222860-58222879 None:intergenic 30.0%
! GATGATATGGTTGTTATTGA+AGG + Chr1:58221387-58221406 MsG0180003196.01.T01:intron 30.0%
! GCTAATTCAAATGGATTTGA+AGG - Chr1:58222327-58222346 None:intergenic 30.0%
! TAAAGTACTATTAGACTCAG+GGG - Chr1:58222858-58222877 None:intergenic 30.0%
! TCAAATGGATTTGAAGTCAT+TGG - Chr1:58222321-58222340 None:intergenic 30.0%
! TCTTTTCTCATTCTTTTTGC+CGG + Chr1:58219421-58219440 MsG0180003196.01.T01:intron 30.0%
! TGAAAGATCTATTTTGTGTC+TGG - Chr1:58220977-58220996 None:intergenic 30.0%
! TGATTTGTACAAATGGTACT+TGG + Chr1:58220374-58220393 MsG0180003196.01.T01:intron 30.0%
! TGTGTTTTCACATTGAGAAT+TGG + Chr1:58221085-58221104 MsG0180003196.01.T01:intron 30.0%
! TTTTAGACTTCTGCAATGAT+AGG + Chr1:58222360-58222379 MsG0180003196.01.T01:intron 30.0%
!! AAATGTTAAAGAGTGTCCAT+GGG + Chr1:58220074-58220093 MsG0180003196.01.T01:intron 30.0%
!! ATAGTGTCTCTTTAAAGCAT+AGG - Chr1:58222624-58222643 None:intergenic 30.0%
!! TCTAATAGTACTTTAAGGTG+AGG + Chr1:58222863-58222882 MsG0180003196.01.T01:intron 30.0%
!!! GGATGAGTAACTTATTTTGT+TGG - Chr1:58220021-58220040 None:intergenic 30.0%
AAAAAAAAAAGATACGGGCC+GGG + Chr1:58219754-58219773 MsG0180003196.01.T01:intron 35.0%
AAAAACAGTTCCTGAGAAGT+AGG - Chr1:58219724-58219743 None:intergenic 35.0%
AAAAACCTTTGGTCTCTAAC+CGG + Chr1:58220468-58220487 MsG0180003196.01.T01:intron 35.0%
AAATCACATGGATAGAACTC+AGG - Chr1:58222902-58222921 None:intergenic 35.0%
AAGGTGAGAAAAACACAAGA+AGG + Chr1:58221406-58221425 MsG0180003196.01.T01:intron 35.0%
AATCACATGGATAGAACTCA+GGG - Chr1:58222901-58222920 None:intergenic 35.0%
ACAATAAAGGTCTTCTTAGG+AGG + Chr1:58219657-58219676 MsG0180003196.01.T01:CDS 35.0%
AGCAAAAAGAGTGGATATGA+AGG - Chr1:58221041-58221060 None:intergenic 35.0%
AGGTGAGAAAAACACAAGAA+GGG + Chr1:58221407-58221426 MsG0180003196.01.T01:intron 35.0%
ATCAAAAAGGGGAAGATTGT+TGG - Chr1:58222761-58222780 None:intergenic 35.0%
ATCACTAGAGTTGTCAAAAC+GGG - Chr1:58219865-58219884 None:intergenic 35.0%
ATCGAAAGGTCCAATGAATT+TGG + Chr1:58220843-58220862 MsG0180003196.01.T01:CDS 35.0%
ATGAATTGGGGTTTGAAGAA+GGG + Chr1:58220724-58220743 MsG0180003196.01.T01:CDS 35.0%
ATTTGGTTATTGTCCTCTGA+AGG + Chr1:58222142-58222161 MsG0180003196.01.T01:intron 35.0%
CAAAATGACCTTTCCCAATA+GGG - Chr1:58220873-58220892 None:intergenic 35.0%
CAAATCAGGCAAAAGATCAT+TGG - Chr1:58222127-58222146 None:intergenic 35.0%
CAGCTTATGAAGTAATGTTC+AGG + Chr1:58221501-58221520 MsG0180003196.01.T01:intron 35.0%
CATCACTAGAGTTGTCAAAA+CGG - Chr1:58219866-58219885 None:intergenic 35.0%
CTTCTATCAAACAAACAGGA+AGG + Chr1:58219210-58219229 MsG0180003196.01.T01:CDS 35.0%
GAAAATGGAAAGCTCTTAAG+AGG + Chr1:58219537-58219556 MsG0180003196.01.T01:CDS 35.0%
GATTTAGATTTCTTGCAGGA+TGG + Chr1:58220939-58220958 MsG0180003196.01.T01:CDS 35.0%
GCAAAAAGAGTGGATATGAA+GGG - Chr1:58221040-58221059 None:intergenic 35.0%
GCAGATCATTTATGATGAAG+AGG + Chr1:58220899-58220918 MsG0180003196.01.T01:CDS 35.0%
GGAAGAACAAATAAGAGCAA+TGG - Chr1:58222597-58222616 None:intergenic 35.0%
GTCTTCACTCCTTTATATAG+AGG + Chr1:58222037-58222056 MsG0180003196.01.T01:intron 35.0%
TACAAATGGTACTTGGAACT+TGG + Chr1:58220381-58220400 MsG0180003196.01.T01:intron 35.0%
TATAAACATACACACCTTGG+AGG - Chr1:58219294-58219313 None:intergenic 35.0%
TATGAATTGGGGTTTGAAGA+AGG + Chr1:58220723-58220742 MsG0180003196.01.T01:CDS 35.0%
TATGATATGAATGCAGGAAG+TGG + Chr1:58219374-58219393 MsG0180003196.01.T01:intron 35.0%
TCTCTCACACCTCTATATAA+AGG - Chr1:58222049-58222068 None:intergenic 35.0%
TCTTGGAATAGCAAAAAGAG+TGG - Chr1:58221050-58221069 None:intergenic 35.0%
TGTTTGATAGAAGAAGTTGG+AGG - Chr1:58219203-58219222 None:intergenic 35.0%
TTTCTTGCAGGATGGAAATA+TGG + Chr1:58220947-58220966 MsG0180003196.01.T01:CDS 35.0%
! AAAGTACTATTAGACTCAGG+GGG - Chr1:58222857-58222876 None:intergenic 35.0%
! AGTCTAAAAGCATGAAGCAA+CGG - Chr1:58222349-58222368 None:intergenic 35.0%
! CAATGATCTTTTGCCTGATT+TGG + Chr1:58222125-58222144 MsG0180003196.01.T01:intron 35.0%
! GAACAATTTCAGCAGAGTTT+TGG + Chr1:58221976-58221995 MsG0180003196.01.T01:intron 35.0%
! GAGAAAAAGATGGCTTTTCT+CGG + Chr1:58221365-58221384 MsG0180003196.01.T01:intron 35.0%
! GGGATTCTGATTTGTACAAA+TGG + Chr1:58220367-58220386 MsG0180003196.01.T01:intron 35.0%
! TTTTGTCTCTGCTTATCTGT+TGG - Chr1:58222997-58223016 None:intergenic 35.0%
!! AATGTTAAAGAGTGTCCATG+GGG + Chr1:58220075-58220094 MsG0180003196.01.T01:intron 35.0%
!! ACATTTTAGTGAACTCTCCT+TGG - Chr1:58221666-58221685 None:intergenic 35.0%
!! ATCTTTAGAACCTCTGATGA+AGG + Chr1:58222455-58222474 MsG0180003196.01.T01:CDS 35.0%
!! CTATTGGGAAAGGTCATTTT+GGG + Chr1:58220872-58220891 MsG0180003196.01.T01:CDS 35.0%
!! CTATTGGTTCTAAACTGTCT+CGG - Chr1:58221231-58221250 None:intergenic 35.0%
!! GAAATGTTAAAGAGTGTCCA+TGG + Chr1:58220073-58220092 MsG0180003196.01.T01:intron 35.0%
!! GGAAGTCTGTTTGATAATGA+TGG + Chr1:58220603-58220622 MsG0180003196.01.T01:intron 35.0%
!! GTTTTGACAACTCTAGTGAT+GGG + Chr1:58219865-58219884 MsG0180003196.01.T01:intron 35.0%
!! TCTCTTTAAAGCATAGGTTC+TGG - Chr1:58222618-58222637 None:intergenic 35.0%
!!! TATCTTTTGAGTTGTTCTGC+CGG + Chr1:58220435-58220454 MsG0180003196.01.T01:intron 35.0%
AAGTTACTCATCCCACACTA+GGG + Chr1:58220028-58220047 MsG0180003196.01.T01:intron 40.0%
ACACCAGTTCCTAAACAAAC+AGG - Chr1:58219632-58219651 None:intergenic 40.0%
ACTGGTGTGCCAAACAATAA+AGG + Chr1:58219644-58219663 MsG0180003196.01.T01:CDS 40.0%
AGACTGGAAGAAAGAAGCAA+CGG - Chr1:58223120-58223139 None:intergenic 40.0%
ATCACATGGATAGAACTCAG+GGG - Chr1:58222900-58222919 None:intergenic 40.0%
ATGAAGGGTCCCAAATGAAT+TGG - Chr1:58221025-58221044 None:intergenic 40.0%
CAAATCCATTCCAAGTCTTG+AGG + Chr1:58222173-58222192 MsG0180003196.01.T01:CDS 40.0%
CAAGAGACTTCAAACTACTC+AGG + Chr1:58221721-58221740 MsG0180003196.01.T01:intron 40.0%
CACCAGTTCCTAAACAAACA+GGG - Chr1:58219631-58219650 None:intergenic 40.0%
CAGAGGACAATAACCAAATC+AGG - Chr1:58222141-58222160 None:intergenic 40.0%
CATGGCCTATTAGAAGTAGA+AGG + Chr1:58220555-58220574 MsG0180003196.01.T01:intron 40.0%
CCAAAATGACCTTTCCCAAT+AGG - Chr1:58220874-58220893 None:intergenic 40.0%
CCAATAGGGTTCCATTAGAT+AGG - Chr1:58221323-58221342 None:intergenic 40.0%
CCTATCTAATGGAACCCTAT+TGG + Chr1:58221320-58221339 MsG0180003196.01.T01:intron 40.0%
CTGAATAAATCCTCCTCTAG+CGG - Chr1:58220765-58220784 None:intergenic 40.0%
GAAGCAACGGCTAATTCAAA+TGG - Chr1:58222336-58222355 None:intergenic 40.0%
GAGCAATGGAATCAACAAGA+AGG - Chr1:58222583-58222602 None:intergenic 40.0%
GAGCACCTTCTACTTCTAAT+AGG - Chr1:58220563-58220582 None:intergenic 40.0%
GATCTGTCGCTAAAAACCTT+TGG + Chr1:58220457-58220476 MsG0180003196.01.T01:intron 40.0%
GATGAAATCTGCTTCTGATG+AGG + Chr1:58223241-58223260 MsG0180003196.01.T01:CDS 40.0%
GGTGAGAAAAACACAAGAAG+GGG + Chr1:58221408-58221427 MsG0180003196.01.T01:intron 40.0%
GTAATCCTCAAGACTTGGAA+TGG - Chr1:58222181-58222200 None:intergenic 40.0%
GTCATTGGATGCTTATTCGT+TGG - Chr1:58222306-58222325 None:intergenic 40.0%
GTGAGAAAAACACAAGAAGG+GGG + Chr1:58221409-58221428 MsG0180003196.01.T01:intron 40.0%
TAAGTTACTCATCCCACACT+AGG + Chr1:58220027-58220046 MsG0180003196.01.T01:intron 40.0%
TAGTTTGGGCTCCTAGAATA+TGG + Chr1:58220790-58220809 MsG0180003196.01.T01:CDS 40.0%
TCCACTCTTCCTCAAAATCA+AGG + Chr1:58219254-58219273 MsG0180003196.01.T01:CDS 40.0%
TCGTTGGAGAGAGTTGAATA+AGG - Chr1:58222290-58222309 None:intergenic 40.0%
TGAATTGGGGTTTGAAGAAG+GGG + Chr1:58220725-58220744 MsG0180003196.01.T01:CDS 40.0%
TGAGAGACTTGAAGCTTCAA+AGG - Chr1:58222408-58222427 None:intergenic 40.0%
TGATAGAAGAAGTTGGAGGA+AGG - Chr1:58219199-58219218 None:intergenic 40.0%
TTCCAAGTCTTGAGGATTAC+TGG + Chr1:58222181-58222200 MsG0180003196.01.T01:CDS 40.0%
TTCCAGTCTTCTGCAATGTT+GGG + Chr1:58223131-58223150 MsG0180003196.01.T01:intron 40.0%
TTCCTTAACAACTGCCCTTA+GGG + Chr1:58220216-58220235 MsG0180003196.01.T01:intron 40.0%
TTGAGAATTGGTTGCAGATG+AGG + Chr1:58221097-58221116 MsG0180003196.01.T01:intron 40.0%
TTGGATTTCCCTATTGGGAA+AGG + Chr1:58220862-58220881 MsG0180003196.01.T01:CDS 40.0%
TTTAGGTGATATGTGTGGTG+TGG + Chr1:58219506-58219525 MsG0180003196.01.T01:intron 40.0%
TTTATGGGATTCCATGGTTC+AGG - Chr1:58220648-58220667 None:intergenic 40.0%
TTTCCTTAACAACTGCCCTT+AGG + Chr1:58220215-58220234 MsG0180003196.01.T01:intron 40.0%
! AAAAAGCCCGGTTCGAATAT+GGG - Chr1:58219800-58219819 None:intergenic 40.0%
! AAACACAGTAGTGGAGATAG+TGG + Chr1:58223014-58223033 MsG0180003196.01.T01:intron 40.0%
! AACGACTCTTTTTGATGTGC+TGG - Chr1:58222086-58222105 None:intergenic 40.0%
! AGGTCTAGAGCTATAATCCA+AGG - Chr1:58219967-58219986 None:intergenic 40.0%
! ATGGCTTTTCTCGGATGATA+TGG + Chr1:58221374-58221393 MsG0180003196.01.T01:intron 40.0%
! CCTATTGGGAAAGGTCATTT+TGG + Chr1:58220871-58220890 MsG0180003196.01.T01:CDS 40.0%
! CTATGTAGTGTTTTCTGCCT+TGG + Chr1:58219947-58219966 MsG0180003196.01.T01:intron 40.0%
! CTCTGTTTTGTGTCTGCAAT+AGG - Chr1:58222231-58222250 None:intergenic 40.0%
! TAAAAAGCCCGGTTCGAATA+TGG - Chr1:58219801-58219820 None:intergenic 40.0%
! TCAAATGGATTTGAAGGCAC+TGG - Chr1:58223092-58223111 None:intergenic 40.0%
!! CAGAAGTTCTGAAGATCATC+AGG - Chr1:58223222-58223241 None:intergenic 40.0%
!! CAGAGGTTCTAAAGATCATC+AGG - Chr1:58222451-58222470 None:intergenic 40.0%
!! CGAATATGGGCTGGAAAATT+GGG - Chr1:58219787-58219806 None:intergenic 40.0%
!! CGTTTTGACAACTCTAGTGA+TGG + Chr1:58219864-58219883 MsG0180003196.01.T01:intron 40.0%
!! GAATATGGGCTGGAAAATTG+GGG - Chr1:58219786-58219805 None:intergenic 40.0%
!! TCCTTGATTTTGAGGAAGAG+TGG - Chr1:58219258-58219277 None:intergenic 40.0%
!! TCGAATATGGGCTGGAAAAT+TGG - Chr1:58219788-58219807 None:intergenic 40.0%
!!! AAGGTTTTTAGCGACAGATC+CGG - Chr1:58220457-58220476 None:intergenic 40.0%
!!! CCTTTTTCAACTCTCTCCAA+CGG + Chr1:58223058-58223077 MsG0180003196.01.T01:intron 40.0%
AAACAGACTTCCTGTCTGTG+AGG - Chr1:58220595-58220614 None:intergenic 45.0%
AAACATACACACCTTGGAGG+AGG - Chr1:58219291-58219310 None:intergenic 45.0%
ACTAGAGTTGTCAAAACGGG+CGG - Chr1:58219862-58219881 None:intergenic 45.0%
CACCAGTAATCCTCAAGACT+TGG - Chr1:58222186-58222205 None:intergenic 45.0%
CCGTTGGAGAGAGTTGAAAA+AGG - Chr1:58223061-58223080 None:intergenic 45.0%
CTTCCAGTCTTCTGCAATGT+TGG + Chr1:58223130-58223149 MsG0180003196.01.T01:intron 45.0%
CTTGTCTGCCCTGTTTGTTT+AGG + Chr1:58219620-58219639 MsG0180003196.01.T01:CDS 45.0%
GACACAAAACAGAGTAGTGG+AGG + Chr1:58222237-58222256 MsG0180003196.01.T01:CDS 45.0%
GATGGGAGACAAGAAAGTCA+GGG + Chr1:58219882-58219901 MsG0180003196.01.T01:intron 45.0%
GCAGACACAAAACAGAGTAG+TGG + Chr1:58222234-58222253 MsG0180003196.01.T01:CDS 45.0%
GCAGAGACAAAACACAGTAG+TGG + Chr1:58223005-58223024 MsG0180003196.01.T01:intron 45.0%
TCAAGCAGTTTCTTAGCGTC+AGG - Chr1:58219683-58219702 None:intergenic 45.0%
TCCTAGAATATGGCGCCTTT+GGG + Chr1:58220800-58220819 MsG0180003196.01.T01:CDS 45.0%
TCCTTAACAACTGCCCTTAG+GGG + Chr1:58220217-58220236 MsG0180003196.01.T01:intron 45.0%
TCTTCTTATCCAATGCCCCA+TGG - Chr1:58220093-58220112 None:intergenic 45.0%
TGATGGGAGACAAGAAAGTC+AGG + Chr1:58219881-58219900 MsG0180003196.01.T01:intron 45.0%
TGCCCTGTTTGTTTAGGAAC+TGG + Chr1:58219626-58219645 MsG0180003196.01.T01:CDS 45.0%
TGTTCAGGATCTAGTTGCAG+CGG + Chr1:58221516-58221535 MsG0180003196.01.T01:intron 45.0%
TTCTTCTTAGGCCTGAACCA+TGG + Chr1:58220634-58220653 MsG0180003196.01.T01:intron 45.0%
TTTCCAGCCCATATTCGAAC+CGG + Chr1:58219790-58219809 MsG0180003196.01.T01:intron 45.0%
! AAACAGAGTAGTGGAGGTAG+TGG + Chr1:58222243-58222262 MsG0180003196.01.T01:intron 45.0%
! AACTCTCCTTGGAAGTGCAA+GGG - Chr1:58221655-58221674 None:intergenic 45.0%
! GAGTGGTGTCCTTGATTTTG+AGG - Chr1:58219266-58219285 None:intergenic 45.0%
!! ACAGGACTACTTCTGGTTTG+TGG - Chr1:58221630-58221649 None:intergenic 45.0%
!! ATAATGGACGCCTACTTCTC+AGG + Chr1:58219711-58219730 MsG0180003196.01.T01:intron 45.0%
!! GACTACTTCTGGTTTGTGGA+AGG - Chr1:58221626-58221645 None:intergenic 45.0%
!! CATTATTTATTATTATAATA+AGG - Chr1:58219465-58219484 None:intergenic 5.0%
AGGTGATATGTGTGGTGTGG+TGG + Chr1:58219509-58219528 MsG0180003196.01.T01:intron 50.0%
ATTAACCCCAAGCCCTAGTG+TGG - Chr1:58220043-58220062 None:intergenic 50.0%
CCAGAAGCTACCTTCATCAG+AGG - Chr1:58222468-58222487 None:intergenic 50.0%
CCTCTGATGAAGGTAGCTTC+TGG + Chr1:58222465-58222484 MsG0180003196.01.T01:intron 50.0%
CTCCTAGAATATGGCGCCTT+TGG + Chr1:58220799-58220818 MsG0180003196.01.T01:CDS 50.0%
CTGAACCTAAGTGCCCCTAA+GGG - Chr1:58220233-58220252 None:intergenic 50.0%
CTTCTGTGATCCTCACAGAC+AGG + Chr1:58220582-58220601 MsG0180003196.01.T01:intron 50.0%
GGCACTTAGGTTCAGGATCA+TGG + Chr1:58220238-58220257 MsG0180003196.01.T01:intron 50.0%
GGTGTGGTGGTACAGGAAAA+TGG + Chr1:58219522-58219541 MsG0180003196.01.T01:intron 50.0%
TAGGTCCGGTTAGAGACCAA+AGG - Chr1:58220476-58220495 None:intergenic 50.0%
TATGTGTGGTGTGGTGGTAC+AGG + Chr1:58219515-58219534 MsG0180003196.01.T01:intron 50.0%
TTAACCCCAAGCCCTAGTGT+GGG - Chr1:58220042-58220061 None:intergenic 50.0%
TTCCAGCCCATATTCGAACC+GGG + Chr1:58219791-58219810 MsG0180003196.01.T01:intron 50.0%
TTGGGGTTTGAAGAAGGGGA+AGG + Chr1:58220729-58220748 MsG0180003196.01.T01:CDS 50.0%
! ACTCTCCTTGGAAGTGCAAG+GGG - Chr1:58221654-58221673 None:intergenic 50.0%
! GAACTCTCCTTGGAAGTGCA+AGG - Chr1:58221656-58221675 None:intergenic 50.0%
! TCGAACCGGGCTTTTTAACC+CGG + Chr1:58219804-58219823 MsG0180003196.01.T01:intron 50.0%
!! AAAGAGTGTCCATGGGGCAT+TGG + Chr1:58220081-58220100 MsG0180003196.01.T01:intron 50.0%
!! TCCCAAAGGCGCCATATTCT+AGG - Chr1:58220804-58220823 None:intergenic 50.0%
AAAAAGATACGGGCCGGGCT+CGG + Chr1:58219759-58219778 MsG0180003196.01.T01:intron 55.0%
AAGGGGGACAGGACTACTTC+TGG - Chr1:58221637-58221656 None:intergenic 55.0%
ACACCACTCTTCCTCCTCCA+AGG + Chr1:58219277-58219296 MsG0180003196.01.T01:CDS 55.0%
ACACCTTGGAGGAGGAAGAG+TGG - Chr1:58219283-58219302 None:intergenic 55.0%
ACTCATCCCACACTAGGGCT+TGG + Chr1:58220033-58220052 MsG0180003196.01.T01:intron 55.0%
CCTGAACCTAAGTGCCCCTA+AGG - Chr1:58220234-58220253 None:intergenic 55.0%
CGCCCAACATTGCAGAAGAC+TGG - Chr1:58223136-58223155 None:intergenic 55.0%
CTCATCCCACACTAGGGCTT+GGG + Chr1:58220034-58220053 MsG0180003196.01.T01:intron 55.0%
CTTCTGGTGACCAGCTTCTG+AGG + Chr1:58222481-58222500 MsG0180003196.01.T01:intron 55.0%
GCCCCTAAGGGCAGTTGTTA+AGG - Chr1:58220221-58220240 None:intergenic 55.0%
TAAAAAGCCCGTTGCCCGAC+CGG + Chr1:58219830-58219849 MsG0180003196.01.T01:intron 55.0%
TAGGGCCGGGTTAAAAAGCC+CGG - Chr1:58219812-58219831 None:intergenic 55.0%
TCATCCCACACTAGGGCTTG+GGG + Chr1:58220035-58220054 MsG0180003196.01.T01:intron 55.0%
! AATCCTCCTCTAGCGGATCG+AGG - Chr1:58220758-58220777 None:intergenic 55.0%
! CTCTCCTTGGAAGTGCAAGG+GGG - Chr1:58221653-58221672 None:intergenic 55.0%
! GAAGCACTCTCCTCAGAAGC+TGG - Chr1:58222494-58222513 None:intergenic 55.0%
! GGCACTGGATGCTTATCCGT+TGG - Chr1:58223077-58223096 None:intergenic 55.0%
!! AACTGCCCTTAGGGGCACTT+AGG + Chr1:58220225-58220244 MsG0180003196.01.T01:intron 55.0%
!! CCTTAGGGGCACTTAGGTTC+AGG + Chr1:58220231-58220250 MsG0180003196.01.T01:intron 55.0%
!! GAAGTTGGAGGAAGGCATCG+AGG - Chr1:58219191-58219210 None:intergenic 55.0%
!! GTCGGGCAACGGGCTTTTTA+GGG - Chr1:58219830-58219849 None:intergenic 55.0%
AAAAAGCCCGTTGCCCGACC+GGG + Chr1:58219831-58219850 MsG0180003196.01.T01:intron 60.0%
AAAAGATACGGGCCGGGCTC+GGG + Chr1:58219760-58219779 MsG0180003196.01.T01:intron 60.0%
AGGAGTCCTCGATCCGCTAG+AGG + Chr1:58220749-58220768 MsG0180003196.01.T01:CDS 60.0%
AGTCCTCGATCCGCTAGAGG+AGG + Chr1:58220752-58220771 MsG0180003196.01.T01:CDS 60.0%
AGTTGTCAAAACGGGCGGCC+CGG - Chr1:58219857-58219876 None:intergenic 60.0%
CTGTCCCCCTTGCACTTCCA+AGG + Chr1:58221646-58221665 MsG0180003196.01.T01:intron 60.0%
! AGCCCGGTTCGAATATGGGC+TGG - Chr1:58219796-58219815 None:intergenic 60.0%
! CTTGGAAGTGCAAGGGGGAC+AGG - Chr1:58221648-58221667 None:intergenic 60.0%
!! GGTCGGGCAACGGGCTTTTT+AGG - Chr1:58219831-58219850 None:intergenic 60.0%
!!! GCAACGGGCTTTTTAGGGCC+GGG - Chr1:58219825-58219844 None:intergenic 60.0%
!!! GGCAACGGGCTTTTTAGGGC+CGG - Chr1:58219826-58219845 None:intergenic 60.0%
GGAAAATTGGGGCCCGAGCC+CGG - Chr1:58219775-58219794 None:intergenic 65.0%
TCAAAACGGGCGGCCCGGCC+CGG - Chr1:58219852-58219871 None:intergenic 75.0%
! AGCCCGTTGCCCGACCGGGC+CGG + Chr1:58219835-58219854 MsG0180003196.01.T01:intron 80.0%
! AACGGGCGGCCCGGCCCGGT+CGG - Chr1:58219848-58219867 None:intergenic 85.0%
! GCCCGGCCCGGTCGGGCAAC+GGG - Chr1:58219840-58219859 None:intergenic 85.0%
! GCCCGTTGCCCGACCGGGCC+GGG + Chr1:58219836-58219855 MsG0180003196.01.T01:intron 85.0%
! GGCCCGGCCCGGTCGGGCAA+CGG - Chr1:58219841-58219860 None:intergenic 85.0%
! ACGGGCGGCCCGGCCCGGTC+GGG - Chr1:58219847-58219866 None:intergenic 90.0%
Chromosome Type Strat End Strand Name
Chr1 gene 58219158 58223289 58219158 ID=MsG0180003196.01;
Chr1 mRNA 58219158 58223289 58219158 ID=MsG0180003196.01.T01;Parent=MsG0180003196.01
Chr1 CDS 58219158 58219302 58219158 ID=MsG0180003196.01.T01.cds;Parent=MsG0180003196.01.T01
Chr1 CDS 58219537 58219708 58219537 ID=MsG0180003196.01.T01.cds;Parent=MsG0180003196.01.T01
Chr1 CDS 58220644 58221087 58220644 ID=MsG0180003196.01.T01.cds;Parent=MsG0180003196.01.T01
Chr1 CDS 58222164 58222258 58222164 ID=MsG0180003196.01.T01.cds;Parent=MsG0180003196.01.T01
Chr1 CDS 58222405 58222476 58222405 ID=MsG0180003196.01.T01.cds;Parent=MsG0180003196.01.T01
Chr1 CDS 58223234 58223289 58223234 ID=MsG0180003196.01.T01.cds;Parent=MsG0180003196.01.T01
Gene Sequence

>MsG0180003196.01.T01

ATGGATTGCAGTTTGCAGGCGTCTGTTATTCCTCGATGCCTTCCTCCAACTTCTTCTATCAAACAAACAGGAAGGACGCGTTGTTTTATTGTTAAATCCACTCTTCCTCAAAATCAAGGACACCACTCTTCCTCCTCCAAGGTGTGAAAATGGAAAGCTCTTAAGAGGAAGCGAGCACAAGATGTTTATGAGTTTACTGAATGTCCTAATTGTTATGGTCGAAGAAAGCTTGTCTGCCCTGTTTGTTTAGGAACTGGTGTGCCAAACAATAAAGGTCTTCTTAGGAGGCCTGACGCTAAGAAACTGCTTGATAAGATGCCTGAACCATGGAATCCCATAAATATGATTCAAAATGGATCTCGTTGTATCCTTGATCATAAATTTCTCTATGAAAAATATGAATTGGGGTTTGAAGAAGGGGAAGGAGTCCTCGATCCGCTAGAGGAGGATTTATTCAGTCACATAGTTTGGGCTCCTAGAATATGGCGCCTTTGGGAATTTCTATTTGATGATTGTATCGAAAGGTCCAATGAATTTGGATTTCCCTATTGGGAAAGGTCATTTTGGGACAAGCAGATCATTTATGATGAAGAGGGTGAGCTTCAAGAGAATGATTTAGATTTCTTGCAGGATGGAAATATGGAGTACCAGACACAAAATAGATCTTTCAAAGAACAAGGCGTTTTTCGAATAAGCCAATTCATTTGGGACCCTTCATATCCACTCTTTTTGCTATTCCAAGATGATCCTTTTGTATATGTGATCAATTTCAAATCCATTCCAAGTCTTGAGGATTACTGGTGCATGCATAGCTGTTGTTCTTGTCCTATTGCAGACACAAAACAGAGTAGTGGAGCCTTTGAAGCTTCAAGTCTCTCAGCTTCTGATGATCTTCAGCTCCTGATGATCTTTAGAACCTCTGATGAAGAACTTCTGATGAAATCTGCTTCTGATGAGGTGCTTCTGATGATGTCAGCACTTTAG

Protein sequence

>MsG0180003196.01.T01

MDCSLQASVIPRCLPPTSSIKQTGRTRCFIVKSTLPQNQGHHSSSSKV*KWKALKRKRAQDVYEFTECPNCYGRRKLVCPVCLGTGVPNNKGLLRRPDAKKLLDKMPEPWNPINMIQNGSRCILDHKFLYEKYELGFEEGEGVLDPLEEDLFSHIVWAPRIWRLWEFLFDDCIERSNEFGFPYWERSFWDKQIIYDEEGELQENDLDFLQDGNMEYQTQNRSFKEQGVFRISQFIWDPSYPLFLLFQDDPFVYVINFKSIPSLEDYWCMHSCCSCPIADTKQSSGAFEASSLSASDDLQLLMIFRTSDEELLMKSASDEVLLMMSAL*