AlfalfaGEDB | MsG0180003196.01

M. sativa cultivar ZhongmuNo.1 / MsG0180003196.01

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180003196.01.T01	RHN55796.1	85.535	159	23	0	107	265	51	209	1.39E-91	283

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180003196.01.T01	Q9B1K6	72.078	154	40	2	107	258	2035	2187	7.84E-65	225

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180003196.01.T01	A0A396HR16	85.535	159	23	0	107	265	51	209	6.66e-92	283

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048748.01	MsG0180003196.01	0.821003	5.085947e-53	4.088471e-50
MsG0080048993.01	MsG0180003196.01	0.877817	4.635641e-69	2.363920e-65
MsG0080049024.01	MsG0180003196.01	0.832389	9.720698e-56	1.084946e-52
MsG0080049029.01	MsG0180003196.01	0.821161	4.677853e-53	3.776526e-50
MsG0080049069.01	MsG0180003196.01	0.812120	4.973738e-51	3.135315e-48
MsG0080049070.01	MsG0180003196.01	0.894555	2.208779e-75	2.206369e-71
MsG0080049072.01	MsG0180003196.01	0.809140	2.192629e-50	1.277186e-47
MsG0080049129.01	MsG0180003196.01	0.827671	1.375650e-54	1.337015e-51
MsG0080049130.01	MsG0180003196.01	0.800532	1.379122e-48	6.436762e-46
MsG0180000017.01	MsG0180003196.01	0.812477	4.158140e-51	2.646636e-48

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180003196.01.T01	MTR_0055s0010	85.535	159	23	0	107	265	353	511	2.85e-94	290
MsG0180003196.01.T01	MTR_0052s0190	85.535	159	23	0	107	265	356	514	3.05e-94	290
MsG0180003196.01.T01	MTR_3g035670	83.648	159	26	0	107	265	102	260	1.60e-92	280
MsG0180003196.01.T01	MTR_4g051435	83.648	159	26	0	107	265	1232	1390	1.07e-86	285
MsG0180003196.01.T01	MTR_0689s0010	67.097	155	46	3	108	258	724	877	3.11e-54	190
MsG0180003196.01.T01	MTR_1g116170	50.307	163	23	4	1	106	1	162	3.83e-35	126
MsG0180003196.01.T01	MTR_1g116170	51.887	106	30	3	1	86	1	105	2.45e-22	91.7
MsG0180003196.01.T01	MTR_8g087850	76.000	50	10	1	115	162	1	50	7.44e-19	79.3

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180003196.01.T01	ATCG01280	65.806	155	48	3	108	258	2037	2190	8.12e-51	181
MsG0180003196.01.T01	ATCG00860	65.806	155	48	3	108	258	2037	2190	8.12e-51	181
MsG0180003196.01.T01	AT2G34860	85.965	57	8	0	50	106	121	177	1.85e-29	111
MsG0180003196.01.T01	AT2G34860	85.965	57	8	0	50	106	121	177	1.85e-29	111

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Find 0 sgRNAs with CRISPR-Local

Find 300 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAAAAAAAGATACGGGC+CGG	+	Chr1:58219753-58219772	MsG0180003196.01.T01:intron	30.0%
AAAGAAGTTAAGAGGGTTAA+AGG	-	Chr1:58219987-58220006	None:intergenic	30.0%
AAAGAGATTATGAAGACAAG+AGG	-	Chr1:58222540-58222559	None:intergenic	30.0%
AACACTTGATATACAATCAG+TGG	+	Chr1:58221861-58221880	MsG0180003196.01.T01:intron	30.0%
ACTGAATGTCCTAATTGTTA+TGG	+	Chr1:58219587-58219606	MsG0180003196.01.T01:CDS	30.0%
ACTTCTTCTATCAAACAAAC+AGG	+	Chr1:58219206-58219225	MsG0180003196.01.T01:CDS	30.0%
AGAAGAAATCATGTAACAAG+GGG	+	Chr1:58220347-58220366	MsG0180003196.01.T01:intron	30.0%
AGACATTGTTGAGAAAAAGA+TGG	+	Chr1:58221355-58221374	MsG0180003196.01.T01:intron	30.0%
AGTGTTTGTCATCATCAAAA+AGG	-	Chr1:58222774-58222793	None:intergenic	30.0%
ATAGGGAAATCCAAATTCAT+TGG	-	Chr1:58220856-58220875	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	58219158	58223289	58219158	ID=MsG0180003196.01;
Chr1	mRNA	58219158	58223289	58219158	ID=MsG0180003196.01.T01;Parent=MsG0180003196.01
Chr1	CDS	58219158	58219302	58219158	ID=MsG0180003196.01.T01.cds;Parent=MsG0180003196.01.T01
Chr1	CDS	58219537	58219708	58219537	ID=MsG0180003196.01.T01.cds;Parent=MsG0180003196.01.T01
Chr1	CDS	58220644	58221087	58220644	ID=MsG0180003196.01.T01.cds;Parent=MsG0180003196.01.T01
Chr1	CDS	58222164	58222258	58222164	ID=MsG0180003196.01.T01.cds;Parent=MsG0180003196.01.T01
Chr1	CDS	58222405	58222476	58222405	ID=MsG0180003196.01.T01.cds;Parent=MsG0180003196.01.T01
Chr1	CDS	58223234	58223289	58223234	ID=MsG0180003196.01.T01.cds;Parent=MsG0180003196.01.T01

Gene Sequence

>MsG0180003196.01.T01

ATGGATTGCAGTTTGCAGGCGTCTGTTATTCCTCGATGCCTTCCTCCAACTTCTTCTATCAAACAAACAGGAAGGACGCGTTGTTTTATTGTTAAATCCACTCTTCCTCAAAATCAAGGACACCACTCTTCCTCCTCCAAGGTGTGAAAATGGAAAGCTCTTAAGAGGAAGCGAGCACAAGATGTTTATGAGTTTACTGAATGTCCTAATTGTTATGGTCGAAGAAAGCTTGTCTGCCCTGTTTGTTTAGGAACTGGTGTGCCAAACAATAAAGGTCTTCTTAGGAGGCCTGACGCTAAGAAACTGCTTGATAAGATGCCTGAACCATGGAATCCCATAAATATGATTCAAAATGGATCTCGTTGTATCCTTGATCATAAATTTCTCTATGAAAAATATGAATTGGGGTTTGAAGAAGGGGAAGGAGTCCTCGATCCGCTAGAGGAGGATTTATTCAGTCACATAGTTTGGGCTCCTAGAATATGGCGCCTTTGGGAATTTCTATTTGATGATTGTATCGAAAGGTCCAATGAATTTGGATTTCCCTATTGGGAAAGGTCATTTTGGGACAAGCAGATCATTTATGATGAAGAGGGTGAGCTTCAAGAGAATGATTTAGATTTCTTGCAGGATGGAAATATGGAGTACCAGACACAAAATAGATCTTTCAAAGAACAAGGCGTTTTTCGAATAAGCCAATTCATTTGGGACCCTTCATATCCACTCTTTTTGCTATTCCAAGATGATCCTTTTGTATATGTGATCAATTTCAAATCCATTCCAAGTCTTGAGGATTACTGGTGCATGCATAGCTGTTGTTCTTGTCCTATTGCAGACACAAAACAGAGTAGTGGAGCCTTTGAAGCTTCAAGTCTCTCAGCTTCTGATGATCTTCAGCTCCTGATGATCTTTAGAACCTCTGATGAAGAACTTCTGATGAAATCTGCTTCTGATGAGGTGCTTCTGATGATGTCAGCACTTTAG

Protein sequence

>MsG0180003196.01.T01

MDCSLQASVIPRCLPPTSSIKQTGRTRCFIVKSTLPQNQGHHSSSSKV*KWKALKRKRAQDVYEFTECPNCYGRRKLVCPVCLGTGVPNNKGLLRRPDAKKLLDKMPEPWNPINMIQNGSRCILDHKFLYEKYELGFEEGEGVLDPLEEDLFSHIVWAPRIWRLWEFLFDDCIERSNEFGFPYWERSFWDKQIIYDEEGELQENDLDFLQDGNMEYQTQNRSFKEQGVFRISQFIWDPSYPLFLLFQDDPFVYVINFKSIPSLEDYWCMHSCCSCPIADTKQSSGAFEASSLSASDDLQLLMIFRTSDEELLMKSASDEVLLMMSAL*