AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480022815.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480022815.01.T01 MTR_4g094705 81.148 610 21 4 90 605 384 993 0.0 962
MsG0480022815.01.T01 MTR_4g094705 69.643 112 2 1 1 80 1 112 1.45e-41 162
MsG0480022815.01.T01 MTR_4g094708 73.108 621 62 6 90 605 383 1003 0.0 859
MsG0480022815.01.T01 MTR_4g094708 61.475 122 15 1 1 90 1 122 1.77e-38 153
MsG0480022815.01.T01 MTR_3g099777 34.382 445 220 10 83 482 448 865 5.49e-58 211
MsG0480022815.01.T01 MTR_3g099777 49.333 75 37 1 12 86 87 160 5.14e-16 82.8
MsG0480022815.01.T01 MTR_5g066710 34.670 424 212 9 103 482 444 846 3.09e-56 206
MsG0480022815.01.T01 MTR_5g066710 47.500 80 39 2 12 91 65 141 2.07e-15 80.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480022815.01.T01 AT1G55860 51.262 634 193 12 70 604 361 977 3.87e-163 517
MsG0480022815.01.T01 AT1G55860 72.464 69 19 0 12 80 44 112 4.72e-30 127
MsG0480022815.01.T01 AT1G70320 50.551 635 198 13 70 604 361 979 4.11e-159 506
MsG0480022815.01.T01 AT1G70320 71.014 69 20 0 12 80 44 112 1.39e-28 122

Find 126 sgRNAs with CRISPR-Local

Find 355 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCGTGTCATTAGAATAATTT+TGG 0.157530 4:+77014212 MsG0480022815.01.T01:CDS
TCGAATATTTGTTGAGAAAA+AGG 0.175668 4:+77016442 MsG0480022815.01.T01:CDS
CTGGTCTTCCATCTGCTTCT+TGG 0.180257 4:+77015911 MsG0480022815.01.T01:CDS
GAACTGTAGAAATGCTTATT+TGG 0.189689 4:-77014243 None:intergenic
TGCTGCATTGTTCAGAGATT+TGG 0.206346 4:+77015487 MsG0480022815.01.T01:CDS
AGAACTTACAAGAAATAATT+TGG 0.206940 4:+77016810 MsG0480022815.01.T01:CDS
TTCCGGTGATAAGAAATTAA+TGG 0.245438 4:-77015668 None:intergenic
TCAACTTGCAGATCCTTTCT+TGG 0.248132 4:-77014132 None:intergenic
TATCTTCAGATTCATATATA+CGG 0.264623 4:-77015754 None:intergenic
CTGCTTCTTGGATGCTATAA+TGG 0.272488 4:+77015923 MsG0480022815.01.T01:CDS
GAGCTTTCATCAACAATTTC+CGG 0.275758 4:-77015685 None:intergenic
ACATATTTGCGAGCTCTTAC+AGG 0.285355 4:+77016083 MsG0480022815.01.T01:CDS
TTCAATGACTCCTTATTATC+AGG 0.286846 4:-77016317 None:intergenic
ATTTGAAGAACGGCTTCTTT+TGG 0.287827 4:-77014186 None:intergenic
ACAGAAACAGGAGGCATTAA+AGG 0.302586 4:-77016497 None:intergenic
TGTGATCTTGCCTGATAATA+AGG 0.305567 4:+77016307 MsG0480022815.01.T01:CDS
GCTGCATTGTTCAGAGATTT+GGG 0.320862 4:+77015488 MsG0480022815.01.T01:CDS
AACTGTAGAAATGCTTATTT+GGG 0.333175 4:-77014242 None:intergenic
TTTATCTCTGTAACTGTGTT+GGG 0.346943 4:+77015314 MsG0480022815.01.T01:CDS
CTTTATCTCTGTAACTGTGT+TGG 0.358184 4:+77015313 MsG0480022815.01.T01:CDS
CTTAAACAGTAATGGCCTTC+AGG 0.358543 4:+77016007 MsG0480022815.01.T01:CDS
ATGCTCTGCCCCACAGAAAC+AGG 0.365448 4:-77016509 None:intergenic
TGCTTCTTTATCCAGTGGAT+TGG 0.368659 4:+77016115 MsG0480022815.01.T01:CDS
TATATACGGGCAGTATTTCC+AGG 0.381847 4:-77015740 None:intergenic
GAAGTATCCCATGTTGAAAA+TGG 0.383399 4:+77015545 MsG0480022815.01.T01:CDS
AAACTCTGTTCCTATGGAAA+TGG 0.384570 4:+77016268 MsG0480022815.01.T01:CDS
GCTTCTTCGTTACGTGGGCC+TGG 0.386749 4:+77016155 MsG0480022815.01.T01:CDS
GCAACATTGTTCACACAATC+TGG 0.391109 4:-77016380 None:intergenic
TTAAAGGCAGCGTAAATAAC+TGG 0.393939 4:-77016481 None:intergenic
CTCTTCAAACTCTGTTCCTA+TGG 0.394426 4:+77016262 MsG0480022815.01.T01:CDS
GCATAAAGCATCCAAACATT+GGG 0.406313 4:-77015985 None:intergenic
TTAATGCCTCCTGTTTCTGT+GGG 0.407093 4:+77016500 MsG0480022815.01.T01:CDS
GACTCCTCGTTGATCAGCTC+AGG 0.413529 4:-77016350 None:intergenic
AAGAGCTCGCAAATATGTTC+TGG 0.424278 4:-77016078 None:intergenic
AACCATTAATTTCTTATCAC+CGG 0.424829 4:+77015666 MsG0480022815.01.T01:CDS
AACTGGATTTGTGTACCTAA+TGG 0.427795 4:-77016960 None:intergenic
ACACAAATATGCAGACCATT+AGG 0.429917 4:+77016945 MsG0480022815.01.T01:CDS
GTCTAGTAGAAGTGTGCATA+TGG 0.436973 4:+77015595 MsG0480022815.01.T01:CDS
TGGGAGGACTGCTCGTCGCT+TGG 0.440952 4:+77017099 MsG0480022815.01.T01:CDS
AGCATAAAGCATCCAAACAT+TGG 0.445504 4:-77015986 None:intergenic
TTTAATGCCTCCTGTTTCTG+TGG 0.452315 4:+77016499 MsG0480022815.01.T01:CDS
TCTCTGAACAATGCAGCAGC+TGG 0.453969 4:-77015482 None:intergenic
CACAGGGAGACTTTCATCAC+TGG 0.457241 4:+77014061 MsG0480022815.01.T01:intron
TCTGTAGTTCGTTCTGAAGA+AGG 0.458691 4:+77017034 MsG0480022815.01.T01:CDS
TGTGTTGGGTTCTTCATCGT+CGG 0.459184 4:+77015328 MsG0480022815.01.T01:CDS
AAATCCACAACACTTGCTTC+TGG 0.461132 4:+77015412 MsG0480022815.01.T01:CDS
CTGTGTAATGACTCCAAGAC+AGG 0.473401 4:+77016842 MsG0480022815.01.T01:CDS
TGTTCTGCTATGCGCGAAGC+AGG 0.477292 4:+77015353 MsG0480022815.01.T01:CDS
GCTTTATGCTTAAACAGTAA+TGG 0.479560 4:+77015999 MsG0480022815.01.T01:CDS
GTGTTGGGTTCTTCATCGTC+GGG 0.481222 4:+77015329 MsG0480022815.01.T01:CDS
CACGTTCCCTGTGGAGTGGA+GGG 0.481701 4:+77016999 MsG0480022815.01.T01:CDS
ATCTTCAGATTCATATATAC+GGG 0.481776 4:-77015753 None:intergenic
GAGTTTGAAGAGCAAGGATC+GGG 0.496156 4:-77016251 None:intergenic
CTATTGCGTGCTATATCCCT+TGG 0.499983 4:+77015707 MsG0480022815.01.T01:CDS
GAAGTATGTAAAACCAAGAA+AGG 0.500359 4:+77014119 MsG0480022815.01.T01:CDS
AACTGAATATAAAAGCTCAT+TGG 0.503333 4:-77016621 None:intergenic
TCCCTTGGAACCTATGCCCC+TGG 0.504369 4:+77015722 MsG0480022815.01.T01:CDS
CATATTTGCGAGCTCTTACA+GGG 0.505137 4:+77016084 MsG0480022815.01.T01:CDS
TTCCTATGGAAATGGATGGT+GGG 0.506564 4:+77016276 MsG0480022815.01.T01:CDS
TTCGTTACGTGGGCCTGGAG+TGG 0.509616 4:+77016160 MsG0480022815.01.T01:CDS
TAAAAGATAGGAATTCTTTG+AGG 0.510265 4:+77016033 MsG0480022815.01.T01:CDS
GCCTTCAGGCTGTAAAAGAT+AGG 0.511675 4:+77016021 MsG0480022815.01.T01:CDS
GGGCTATCCCTTGCCGAGTA+CGG 0.513068 4:-77017066 None:intergenic
TTCCAGGGGCATAGGTTCCA+AGG 0.514262 4:-77015724 None:intergenic
AATCACGCCCTCCACTCCAC+AGG 0.515774 4:-77017006 None:intergenic
CGCCACGCTTCTTCGTTACG+TGG 0.516518 4:+77016149 MsG0480022815.01.T01:CDS
AGTAGAAGTGTGCATATGGT+TGG 0.525127 4:+77015599 MsG0480022815.01.T01:CDS
TCACGTTCCCTGTGGAGTGG+AGG 0.529900 4:+77016998 MsG0480022815.01.T01:CDS
CAGTCCTCCCACCTCGCATG+CGG 0.541053 4:-77017087 None:intergenic
GGCAGTATTTCCAGGGGCAT+AGG 0.541780 4:-77015732 None:intergenic
AAGGTTTGCACCGCCGTACT+CGG 0.542917 4:+77017053 MsG0480022815.01.T01:CDS
CATTAATTCATCCAATCCAC+TGG 0.543712 4:-77016126 None:intergenic
AGTCCTCCCACCTCGCATGC+GGG 0.545268 4:-77017086 None:intergenic
AATCCACTGGATAAAGAAGC+AGG 0.549912 4:-77016113 None:intergenic
CACAAAGATGAGGGATCCAC+AGG 0.550369 4:-77016227 None:intergenic
ATGCACACTTCTACTAGACT+TGG 0.552283 4:-77015591 None:intergenic
TTCAGTAGAGGTAGAAGAGT+AGG 0.553901 4:-77015383 None:intergenic
AGAGTTTGAAGAGCAAGGAT+CGG 0.555161 4:-77016252 None:intergenic
GGATAGCCCGCATGCGAGGT+GGG 0.558468 4:+77017080 MsG0480022815.01.T01:CDS
TGATAATAAGGAGTCATTGA+AGG 0.562439 4:+77016319 MsG0480022815.01.T01:CDS
TTGCACCGCCGTACTCGGCA+AGG 0.563582 4:+77017058 MsG0480022815.01.T01:CDS
TCCTATGGAAATGGATGGTG+GGG 0.564244 4:+77016277 MsG0480022815.01.T01:CDS
CTTTCAACAACAGTAGATGA+AGG 0.570157 4:-77016908 None:intergenic
ACACCTGCTTCTTTATCCAG+TGG 0.579382 4:+77016110 MsG0480022815.01.T01:CDS
GGAACAGAGTTTGAAGAGCA+AGG 0.582063 4:-77016257 None:intergenic
TTCAATCTTCAAGCGTGAGA+TGG 0.585181 4:-77015525 None:intergenic
GGGATAGCCCGCATGCGAGG+TGG 0.585540 4:+77017079 MsG0480022815.01.T01:CDS
GTTCCTATGGAAATGGATGG+TGG 0.586171 4:+77016275 MsG0480022815.01.T01:CDS
GGTTCACGTTCCCTGTGGAG+TGG 0.586280 4:+77016995 MsG0480022815.01.T01:CDS
GAGAAAACGTGCACTCGAAG+TGG 0.594677 4:+77012174 MsG0480022815.01.T01:CDS
TATAGCATCCAAGAAGCAGA+TGG 0.594980 4:-77015919 None:intergenic
TCCCCACCATCCATTTCCAT+AGG 0.597620 4:-77016278 None:intergenic
AAGGATCTGCAAGTTGATGA+CGG 0.597622 4:+77014138 MsG0480022815.01.T01:CDS
GCCACGCTTCTTCGTTACGT+GGG 0.599001 4:+77016150 MsG0480022815.01.T01:CDS
TGCACCGCCGTACTCGGCAA+GGG 0.599498 4:+77017059 MsG0480022815.01.T01:CDS
ACAGGGAGACTTTCATCACT+GGG 0.600345 4:+77014062 MsG0480022815.01.T01:intron
TCAACCAACATATCCACTCC+AGG 0.600499 4:-77016173 None:intergenic
GGATTTGTATCTTTCAGTAG+AGG 0.603229 4:-77015395 None:intergenic
TCCAGGGGCATAGGTTCCAA+GGG 0.604431 4:-77015723 None:intergenic
ATATTTGCGAGCTCTTACAG+GGG 0.606533 4:+77016085 MsG0480022815.01.T01:CDS
GACACGAAGAATTTGAAGAA+CGG 0.615581 4:-77014196 None:intergenic
ATCACGCCCTCCACTCCACA+GGG 0.615824 4:-77017005 None:intergenic
CAAGGGATAGCCCGCATGCG+AGG 0.616221 4:+77017076 MsG0480022815.01.T01:CDS
ATATACGGGCAGTATTTCCA+GGG 0.617431 4:-77015739 None:intergenic
TCAACCAGAAGCAAGTGTTG+TGG 0.620281 4:-77015416 None:intergenic
GTATCCCATGTTGAAAATGG+TGG 0.622923 4:+77015548 MsG0480022815.01.T01:CDS
CATAAAGCATCCAAACATTG+GGG 0.626274 4:-77015984 None:intergenic
TAGCCCGCATGCGAGGTGGG+AGG 0.632515 4:+77017083 MsG0480022815.01.T01:CDS
GGATCGGGACACAAAGATGA+GGG 0.636321 4:-77016236 None:intergenic
CTATCCCTTGCCGAGTACGG+CGG 0.637625 4:-77017063 None:intergenic
TCTGTTCCTATGGAAATGGA+TGG 0.644720 4:+77016272 MsG0480022815.01.T01:CDS
ACTCCTCGTTGATCAGCTCA+GGG 0.647677 4:-77016349 None:intergenic
AGGATCGGGACACAAAGATG+AGG 0.653333 4:-77016237 None:intergenic
TGGGCCTGGAGTGGATATGT+TGG 0.655297 4:+77016169 MsG0480022815.01.T01:CDS
TGTGTAATGACTCCAAGACA+GGG 0.656302 4:+77016843 MsG0480022815.01.T01:CDS
GCATTGTTCAGAGATTTGGG+AGG 0.657004 4:+77015491 MsG0480022815.01.T01:CDS
TAATGCCTCCTGTTTCTGTG+GGG 0.660235 4:+77016501 MsG0480022815.01.T01:CDS
ATTAATGGTTCAGAATACAA+TGG 0.662132 4:-77015653 None:intergenic
GGACAGGTTCACGTTCCCTG+TGG 0.665215 4:+77016990 MsG0480022815.01.T01:CDS
CTCTGCCCCACAGAAACAGG+AGG 0.677142 4:-77016506 None:intergenic
GCCCACGTAACGAAGAAGCG+TGG 0.697223 4:-77016151 None:intergenic
GCATTTCTACAGTTCATACG+AGG 0.702683 4:+77014251 MsG0480022815.01.T01:CDS
ATAAAGCATCCAAACATTGG+GGG 0.717067 4:-77015983 None:intergenic
GTGTAATGACTCCAAGACAG+GGG 0.721884 4:+77016844 MsG0480022815.01.T01:CDS
TATACGGGCAGTATTTCCAG+GGG 0.733708 4:-77015738 None:intergenic
TGACCCTGAGCTGATCAACG+AGG 0.745655 4:+77016346 MsG0480022815.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTTTTTTTTTTTTTTTT+TGG + Chr4:77014005-77014024 MsG0480022815.01.T01:intron 0.0%
!! ATTACTAATATAAAAAGAAA+AGG - Chr4:77013959-77013978 None:intergenic 10.0%
!! TTACTAATATAAAAAGAAAA+GGG - Chr4:77013958-77013977 None:intergenic 10.0%
!! ATATATTAACAAAAGTTAAG+TGG - Chr4:77013235-77013254 None:intergenic 15.0%
!! TTATTCATAATACATCAAAT+TGG + Chr4:77015269-77015288 MsG0480022815.01.T01:intron 15.0%
!!! ACTTATAATTTTGCTTAAAT+TGG + Chr4:77012875-77012894 MsG0480022815.01.T01:intron 15.0%
!!! TAGTTTTAAAGTTAATAAAC+TGG + Chr4:77014417-77014436 MsG0480022815.01.T01:intron 15.0%
!!! TATTTTTATGTACTTTACAA+AGG - Chr4:77013084-77013103 None:intergenic 15.0%
!!! TTTTTTTTGTTACACTTATT+GGG + Chr4:77012263-77012282 MsG0480022815.01.T01:intron 15.0%
!!! TTTTTTTTTGTTACACTTAT+TGG + Chr4:77012262-77012281 MsG0480022815.01.T01:intron 15.0%
!! AAAATGTCTACTTCATAAAA+AGG - Chr4:77013352-77013371 None:intergenic 20.0%
!! AACCAATTCATTGATAAATT+CGG - Chr4:77015080-77015099 None:intergenic 20.0%
!! AACTTAGTTAACAATGAAAA+TGG - Chr4:77012334-77012353 None:intergenic 20.0%
!! AGAACTTACAAGAAATAATT+TGG + Chr4:77016810-77016829 MsG0480022815.01.T01:CDS 20.0%
!! AGTTACCATAATTAAAGAAA+TGG - Chr4:77013173-77013192 None:intergenic 20.0%
!! CAAATCCATTTCTTTAATTA+TGG + Chr4:77013165-77013184 MsG0480022815.01.T01:intron 20.0%
!! TAATAGAATACAGAGAAAAA+GGG + Chr4:77013299-77013318 MsG0480022815.01.T01:intron 20.0%
!! TAATATTCATCATTTACCAA+TGG + Chr4:77013515-77013534 MsG0480022815.01.T01:intron 20.0%
!! TATCTTCAGATTCATATATA+CGG - Chr4:77015757-77015776 None:intergenic 20.0%
!!! AAACCTGAATTTTTAACAAA+AGG - Chr4:77012244-77012263 None:intergenic 20.0%
!!! AACCTGAATTTTTAACAAAA+GGG - Chr4:77012243-77012262 None:intergenic 20.0%
!!! TTTTCCTTTATCTCTTTTTT+TGG + Chr4:77014369-77014388 MsG0480022815.01.T01:intron 20.0%
!!! TTTTTTTGTTACACTTATTG+GGG + Chr4:77012264-77012283 MsG0480022815.01.T01:intron 20.0%
! AAAATTATAAGTTCTGCATG+AGG - Chr4:77012867-77012886 None:intergenic 25.0%
! AAATTAAAATGCATAGGTAC+GGG + Chr4:77012476-77012495 MsG0480022815.01.T01:intron 25.0%
! AACAATATTATACCAGTGTA+TGG + Chr4:77012598-77012617 MsG0480022815.01.T01:intron 25.0%
! AACCATTAATTTCTTATCAC+CGG + Chr4:77015666-77015685 MsG0480022815.01.T01:CDS 25.0%
! AACCTTTAAACAACTTTGTA+TGG + Chr4:77013908-77013927 MsG0480022815.01.T01:intron 25.0%
! AACTGAATATAAAAGCTCAT+TGG - Chr4:77016624-77016643 None:intergenic 25.0%
! AACTGTAGAAATGCTTATTT+GGG - Chr4:77014245-77014264 None:intergenic 25.0%
! AATAGAATACAGAGAAAAAG+GGG + Chr4:77013300-77013319 MsG0480022815.01.T01:intron 25.0%
! AATTTCTTATTGGAACTTAG+AGG - Chr4:77012786-77012805 None:intergenic 25.0%
! ACAATATTATACCAGTGTAT+GGG + Chr4:77012599-77012618 MsG0480022815.01.T01:intron 25.0%
! ACCAATTCATTGATAAATTC+GGG - Chr4:77015079-77015098 None:intergenic 25.0%
! ACCTTTAAACAACTTTGTAT+GGG + Chr4:77013909-77013928 MsG0480022815.01.T01:intron 25.0%
! ACTGAATAAACTCAAAATGA+AGG - Chr4:77014758-77014777 None:intergenic 25.0%
! ATCTTCAGATTCATATATAC+GGG - Chr4:77015756-77015775 None:intergenic 25.0%
! ATTAATGGTTCAGAATACAA+TGG - Chr4:77015656-77015675 None:intergenic 25.0%
! ATTACATTGTCAATGAGTTT+CGG - Chr4:77013499-77013518 None:intergenic 25.0%
! CCAACATTGATACTTTATAA+TGG + Chr4:77014481-77014500 MsG0480022815.01.T01:intron 25.0%
! CTAGAAACTATCTCAAAAAT+TGG + Chr4:77016200-77016219 MsG0480022815.01.T01:CDS 25.0%
! CTGAATAAACTCAAAATGAA+GGG - Chr4:77014757-77014776 None:intergenic 25.0%
! GAAATTAAAATGCATAGGTA+CGG + Chr4:77012475-77012494 MsG0480022815.01.T01:intron 25.0%
! GCTGATGTATTAAAAGATAT+TGG + Chr4:77016787-77016806 MsG0480022815.01.T01:intron 25.0%
! GGATTGAAATTAAAATGCAT+AGG + Chr4:77012470-77012489 MsG0480022815.01.T01:intron 25.0%
! GTAATAGAATACAGAGAAAA+AGG + Chr4:77013298-77013317 MsG0480022815.01.T01:intron 25.0%
! TAAAAATTTGATCGATGAAG+AGG - Chr4:77012212-77012231 None:intergenic 25.0%
! TAAAAGATAGGAATTCTTTG+AGG + Chr4:77016033-77016052 MsG0480022815.01.T01:CDS 25.0%
! TAAGCAAAGAAAATCTTAAC+TGG - Chr4:77014920-77014939 None:intergenic 25.0%
! TCCTTGAATTAATAATCCAT+TGG - Chr4:77013534-77013553 None:intergenic 25.0%
!! AAAATTATACATAAGCACTG+AGG - Chr4:77015788-77015807 None:intergenic 25.0%
!! AAGATGATTATCTAAGATTG+TGG - Chr4:77012811-77012830 None:intergenic 25.0%
!! AATGAGCTTTTATATTCAGT+TGG + Chr4:77016623-77016642 MsG0480022815.01.T01:intron 25.0%
!! ACCTGAATTTTTAACAAAAG+GGG - Chr4:77012242-77012261 None:intergenic 25.0%
!! ATGAGCTTTTATATTCAGTT+GGG + Chr4:77016624-77016643 MsG0480022815.01.T01:intron 25.0%
!! CCATTATAAAGTATCAATGT+TGG - Chr4:77014484-77014503 None:intergenic 25.0%
!! CGAATATTTGTTGAGAAAAA+GGG + Chr4:77016443-77016462 MsG0480022815.01.T01:CDS 25.0%
!! GAATATTTGTTGAGAAAAAG+GGG + Chr4:77016444-77016463 MsG0480022815.01.T01:CDS 25.0%
!! TCGAATATTTGTTGAGAAAA+AGG + Chr4:77016442-77016461 MsG0480022815.01.T01:CDS 25.0%
!! TTGTTGAGAAAAGTTTTTGA+AGG - Chr4:77016543-77016562 None:intergenic 25.0%
!!! AACTGTTTTTCTTCAAAAAG+TGG - Chr4:77014590-77014609 None:intergenic 25.0%
!!! ACCAATGGATTATTAATTCA+AGG + Chr4:77013530-77013549 MsG0480022815.01.T01:intron 25.0%
!!! ACTTTTTGAAGAAAAACAGT+TGG + Chr4:77014589-77014608 MsG0480022815.01.T01:intron 25.0%
!!! TCGTGTCATTAGAATAATTT+TGG + Chr4:77014212-77014231 MsG0480022815.01.T01:CDS 25.0%
!!! TGTTATATACTCTAAAGCAT+AGG - Chr4:77012757-77012776 None:intergenic 25.0%
!!! TTGATGAAGCATCTAATTTT+TGG - Chr4:77013853-77013872 None:intergenic 25.0%
AAATTAGACCAACATGCATA+CGG - Chr4:77014351-77014370 None:intergenic 30.0%
AAGCATAGGTACATGTAAAA+CGG - Chr4:77012743-77012762 None:intergenic 30.0%
AATTTCAATCCATGCAACAA+AGG - Chr4:77012461-77012480 None:intergenic 30.0%
ATGCAGTTTGGAAAAAATTC+GGG + Chr4:77015119-77015138 MsG0480022815.01.T01:intron 30.0%
ATTATGAATAACAGAGTCGA+TGG - Chr4:77015260-77015279 None:intergenic 30.0%
CAAAGAAAATCTTAACTGGA+AGG - Chr4:77014916-77014935 None:intergenic 30.0%
CAGTTTCAGTTGTTTGTATA+TGG + Chr4:77013663-77013682 MsG0480022815.01.T01:intron 30.0%
CCACATACAAAATAAAAGAC+AGG - Chr4:77013721-77013740 None:intergenic 30.0%
CTTAGATAATCATCTTAAGC+TGG + Chr4:77012815-77012834 MsG0480022815.01.T01:intron 30.0%
GAACTGTAGAAATGCTTATT+TGG - Chr4:77014246-77014265 None:intergenic 30.0%
GAAGTATGTAAAACCAAGAA+AGG + Chr4:77014119-77014138 MsG0480022815.01.T01:CDS 30.0%
GACAATACAACTTATGCTTA+AGG - Chr4:77013633-77013652 None:intergenic 30.0%
GATGCAGTTTGGAAAAAATT+CGG + Chr4:77015118-77015137 MsG0480022815.01.T01:intron 30.0%
GATTGTGGAGAATTTCTTAT+TGG - Chr4:77012796-77012815 None:intergenic 30.0%
GCTTTATGCTTAAACAGTAA+TGG + Chr4:77015999-77016018 MsG0480022815.01.T01:CDS 30.0%
GTCACCAAAAAAAGAGATAA+AGG - Chr4:77014376-77014395 None:intergenic 30.0%
GTTAATAAACTGGTTACTGT+AGG + Chr4:77014427-77014446 MsG0480022815.01.T01:intron 30.0%
TAACTAAGTTGTAATTGCTG+TGG + Chr4:77012344-77012363 MsG0480022815.01.T01:intron 30.0%
TAATGAAGTTGTAATTGCTG+TGG + Chr4:77012304-77012323 MsG0480022815.01.T01:intron 30.0%
TCCCATACAAAGTTGTTTAA+AGG - Chr4:77013913-77013932 None:intergenic 30.0%
TGATAATAAGGAGTCATTGA+AGG + Chr4:77016319-77016338 MsG0480022815.01.T01:CDS 30.0%
TTAAAAACGAGCATAAAGCT+CGG - Chr4:77016583-77016602 None:intergenic 30.0%
TTCAATGACTCCTTATTATC+AGG - Chr4:77016320-77016339 None:intergenic 30.0%
TTCCGGTGATAAGAAATTAA+TGG - Chr4:77015671-77015690 None:intergenic 30.0%
TTTATCTCTGTAACTGTGTT+GGG + Chr4:77015314-77015333 MsG0480022815.01.T01:CDS 30.0%
TTTCTTTGCTTACAAGATTG+CGG + Chr4:77014928-77014947 MsG0480022815.01.T01:intron 30.0%
TTTGGATGTGTTTGATTCAT+TGG + Chr4:77014023-77014042 MsG0480022815.01.T01:intron 30.0%
! ACCCCTTTTGTTAAAAATTC+AGG + Chr4:77012238-77012257 MsG0480022815.01.T01:intron 30.0%
! AGCACTGTTAAATGTTACTT+TGG + Chr4:77012921-77012940 MsG0480022815.01.T01:intron 30.0%
! ATTGGGGTTTATGTTTTTCA+TGG + Chr4:77012280-77012299 MsG0480022815.01.T01:intron 30.0%
! GCACACATCATAAGTTTTTA+AGG - Chr4:77012966-77012985 None:intergenic 30.0%
! TGAGCTTTTATATTCAGTTG+GGG + Chr4:77016625-77016644 MsG0480022815.01.T01:intron 30.0%
! TTCAGACGAGCAAAATATTT+TGG + Chr4:77015806-77015825 MsG0480022815.01.T01:intron 30.0%
!! AAAAGATCCTACTTGTTTTC+CGG + Chr4:77015877-77015896 MsG0480022815.01.T01:intron 30.0%
!! AAATGCATTTCTAGTCTTGA+AGG + Chr4:77016694-77016713 MsG0480022815.01.T01:intron 30.0%
!! AGCTTTATGCTCGTTTTTAA+GGG + Chr4:77016583-77016602 MsG0480022815.01.T01:CDS 30.0%
!! ATGAAGCATCTAATTTTTGG+AGG - Chr4:77013850-77013869 None:intergenic 30.0%
!! CATTGACTTTGAATCATTCT+AGG + Chr4:77017132-77017151 MsG0480022815.01.T01:CDS 30.0%
!! CTCTCTGTATTTTTGTTGAA+GGG + Chr4:77016727-77016746 MsG0480022815.01.T01:intron 30.0%
!! GCACTGTTAAATGTTACTTT+GGG + Chr4:77012922-77012941 MsG0480022815.01.T01:intron 30.0%
!! TCTCATCATATTAAGTTGAC+CGG - Chr4:77014309-77014328 None:intergenic 30.0%
!! TCTCTCTGTATTTTTGTTGA+AGG + Chr4:77016726-77016745 MsG0480022815.01.T01:intron 30.0%
!!! CCTGTCTTTTATTTTGTATG+TGG + Chr4:77013718-77013737 MsG0480022815.01.T01:intron 30.0%
!!! TATCTCTTTTTTTGGTGACT+TGG + Chr4:77014377-77014396 MsG0480022815.01.T01:intron 30.0%
AAACTCTGTTCCTATGGAAA+TGG + Chr4:77016268-77016287 MsG0480022815.01.T01:CDS 35.0%
AAATGTGTGGAAACAGATCT+TGG + Chr4:77014856-77014875 MsG0480022815.01.T01:intron 35.0%
AAATTGTTTGCTCTTGCACA+AGG + Chr4:77014645-77014664 MsG0480022815.01.T01:intron 35.0%
AACTGGATTTGTGTACCTAA+TGG - Chr4:77016963-77016982 None:intergenic 35.0%
ACACAAATATGCAGACCATT+AGG + Chr4:77016945-77016964 MsG0480022815.01.T01:CDS 35.0%
AGCACTTAAAAATACACAGC+TGG - Chr4:77013774-77013793 None:intergenic 35.0%
AGTCAGAAAGTGACATCAAA+GGG + Chr4:77014783-77014802 MsG0480022815.01.T01:intron 35.0%
ATAATTCTGATTCAAGCCTG+TGG + Chr4:77015017-77015036 MsG0480022815.01.T01:intron 35.0%
ATCTAAACCGGAAAACAAGT+AGG - Chr4:77015887-77015906 None:intergenic 35.0%
CAACTAGTAGTGTAAGTTCA+GGG + Chr4:77013013-77013032 MsG0480022815.01.T01:intron 35.0%
CATTAATTCATCCAATCCAC+TGG - Chr4:77016129-77016148 None:intergenic 35.0%
CTTTATCTCTGTAACTGTGT+TGG + Chr4:77015313-77015332 MsG0480022815.01.T01:CDS 35.0%
CTTTCAACAACAGTAGATGA+AGG - Chr4:77016911-77016930 None:intergenic 35.0%
CTTTGTATGGGAGTTTGATA+AGG + Chr4:77013921-77013940 MsG0480022815.01.T01:intron 35.0%
GACACGAAGAATTTGAAGAA+CGG - Chr4:77014199-77014218 None:intergenic 35.0%
GAGCTTTCATCAACAATTTC+CGG - Chr4:77015688-77015707 None:intergenic 35.0%
GCATAAGTTGTATTGTCATC+TGG + Chr4:77013636-77013655 MsG0480022815.01.T01:intron 35.0%
GCCCGAATTTATCAATGAAT+TGG + Chr4:77015075-77015094 MsG0480022815.01.T01:intron 35.0%
GGAATCAGCTAATCAAACAA+CGG - Chr4:77012994-77013013 None:intergenic 35.0%
GGATTTGTATCTTTCAGTAG+AGG - Chr4:77015398-77015417 None:intergenic 35.0%
GTATCAATGTTGGTCACTAA+AGG - Chr4:77014474-77014493 None:intergenic 35.0%
TAAAAACGAGCATAAAGCTC+GGG - Chr4:77016582-77016601 None:intergenic 35.0%
TGTGATCTTGCCTGATAATA+AGG + Chr4:77016307-77016326 MsG0480022815.01.T01:CDS 35.0%
TTAAAGGCAGCGTAAATAAC+TGG - Chr4:77016484-77016503 None:intergenic 35.0%
! AGCATAAAGCATCCAAACAT+TGG - Chr4:77015989-77016008 None:intergenic 35.0%
! AGGTACACAAATCCAGTTTT+TGG + Chr4:77016965-77016984 MsG0480022815.01.T01:CDS 35.0%
! AGTTTGATAAGGTGGCTTTA+TGG + Chr4:77013932-77013951 MsG0480022815.01.T01:intron 35.0%
! ATAAAGCATCCAAACATTGG+GGG - Chr4:77015986-77016005 None:intergenic 35.0%
! ATTGCATCAGTTTTGCCTAA+TGG + Chr4:77014699-77014718 MsG0480022815.01.T01:intron 35.0%
! ATTTGAAGAACGGCTTCTTT+TGG - Chr4:77014189-77014208 None:intergenic 35.0%
! CATAAAGCATCCAAACATTG+GGG - Chr4:77015987-77016006 None:intergenic 35.0%
! CTAGACTTGGAATTTTCATC+TGG - Chr4:77015581-77015600 None:intergenic 35.0%
! GAAGTATCCCATGTTGAAAA+TGG + Chr4:77015545-77015564 MsG0480022815.01.T01:CDS 35.0%
! GAGCTTTTATATTCAGTTGG+GGG + Chr4:77016626-77016645 MsG0480022815.01.T01:intron 35.0%
! GCATAAAGCATCCAAACATT+GGG - Chr4:77015988-77016007 None:intergenic 35.0%
! TTCTCCACCATTTTCAACAT+GGG - Chr4:77015555-77015574 None:intergenic 35.0%
! TTTGAAGAACGGCTTCTTTT+GGG - Chr4:77014188-77014207 None:intergenic 35.0%
!! AGACGAGCAAAATATTTTGG+TGG + Chr4:77015809-77015828 MsG0480022815.01.T01:intron 35.0%
!! GAGCTTTATGCTCGTTTTTA+AGG + Chr4:77016582-77016601 MsG0480022815.01.T01:CDS 35.0%
!! GCGCATTTTAGAAGCTTTTA+TGG + Chr4:77015448-77015467 MsG0480022815.01.T01:CDS 35.0%
!! GGTTCTTGTATGTTTTCAAG+TGG - Chr4:77013892-77013911 None:intergenic 35.0%
!! TTTGTTGTTCCTTTGTTGCA+TGG + Chr4:77012449-77012468 MsG0480022815.01.T01:intron 35.0%
!!! ACACAAATCCAGTTTTTGGT+AGG + Chr4:77016969-77016988 MsG0480022815.01.T01:CDS 35.0%
!!! CATCAATCTTTTTTCCACTC+CGG + Chr4:77014287-77014306 MsG0480022815.01.T01:intron 35.0%
!!! TATGTTTTCAAGTGGAACTG+CGG - Chr4:77013884-77013903 None:intergenic 35.0%
!!! TTCTTTGAGGTGTTTTGTGA+AGG + Chr4:77016046-77016065 MsG0480022815.01.T01:CDS 35.0%
AAATCCACAACACTTGCTTC+TGG + Chr4:77015412-77015431 MsG0480022815.01.T01:CDS 40.0%
AACACCTTTGTCTGCTTTGT+GGG - Chr4:77016673-77016692 None:intergenic 40.0%
AAGAGCTCGCAAATATGTTC+TGG - Chr4:77016081-77016100 None:intergenic 40.0%
AAGTGACGTCAACAAATGTG+TGG + Chr4:77014843-77014862 MsG0480022815.01.T01:intron 40.0%
AATCCACTGGATAAAGAAGC+AGG - Chr4:77016116-77016135 None:intergenic 40.0%
ACATATTTGCGAGCTCTTAC+AGG + Chr4:77016083-77016102 MsG0480022815.01.T01:CDS 40.0%
AGAGTTTGAAGAGCAAGGAT+CGG - Chr4:77016255-77016274 None:intergenic 40.0%
AGCCCATTTCATGTACGATA+GGG - Chr4:77014731-77014750 None:intergenic 40.0%
AGCTAATCAAACAACGGTGT+CGG - Chr4:77012988-77013007 None:intergenic 40.0%
ATACACAGCTGGTGAAGTAA+AGG - Chr4:77013763-77013782 None:intergenic 40.0%
ATACAGAGAAAAAGGGGTCA+TGG + Chr4:77013306-77013325 MsG0480022815.01.T01:intron 40.0%
ATATACGGGCAGTATTTCCA+GGG - Chr4:77015742-77015761 None:intergenic 40.0%
ATATTTGCGAGCTCTTACAG+GGG + Chr4:77016085-77016104 MsG0480022815.01.T01:CDS 40.0%
ATGCACACTTCTACTAGACT+TGG - Chr4:77015594-77015613 None:intergenic 40.0%
CATATTTGCGAGCTCTTACA+GGG + Chr4:77016084-77016103 MsG0480022815.01.T01:CDS 40.0%
CCAACTAGTAGTGTAAGTTC+AGG + Chr4:77013012-77013031 MsG0480022815.01.T01:intron 40.0%
CCTGAACTTACACTACTAGT+TGG - Chr4:77013015-77013034 None:intergenic 40.0%
CGGAGTGGAAAAAAGATTGA+TGG - Chr4:77014289-77014308 None:intergenic 40.0%
CGTAGAAAATGACGTAGTGT+TGG + Chr4:77012664-77012683 MsG0480022815.01.T01:intron 40.0%
CTACTTCATAAAAAGGCCTC+TGG - Chr4:77013345-77013364 None:intergenic 40.0%
CTCTTCAAACTCTGTTCCTA+TGG + Chr4:77016262-77016281 MsG0480022815.01.T01:CDS 40.0%
CTGCTTCTTGGATGCTATAA+TGG + Chr4:77015923-77015942 MsG0480022815.01.T01:CDS 40.0%
CTTAAACAGTAATGGCCTTC+AGG + Chr4:77016007-77016026 MsG0480022815.01.T01:CDS 40.0%
CTTAGTGCTCAATATGCGTT+GGG - Chr4:77013043-77013062 None:intergenic 40.0%
GACCCTATCGTACATGAAAT+GGG + Chr4:77014726-77014745 MsG0480022815.01.T01:intron 40.0%
GAGTCAGAAAGTGACATCAA+AGG + Chr4:77014782-77014801 MsG0480022815.01.T01:intron 40.0%
GCAACATTGTTCACACAATC+TGG - Chr4:77016383-77016402 None:intergenic 40.0%
GCATTTCTACAGTTCATACG+AGG + Chr4:77014251-77014270 MsG0480022815.01.T01:CDS 40.0%
GCTGCATTGTTCAGAGATTT+GGG + Chr4:77015488-77015507 MsG0480022815.01.T01:CDS 40.0%
GTATCCCATGTTGAAAATGG+TGG + Chr4:77015548-77015567 MsG0480022815.01.T01:CDS 40.0%
GTCAGAAAGTGACATCAAAG+GGG + Chr4:77014784-77014803 MsG0480022815.01.T01:intron 40.0%
TAAAATGCATAGGTACGGGT+AGG + Chr4:77012480-77012499 MsG0480022815.01.T01:intron 40.0%
TACCTGTACCAGATACATAC+CGG + Chr4:77012703-77012722 MsG0480022815.01.T01:intron 40.0%
TATAGCATCCAAGAAGCAGA+TGG - Chr4:77015922-77015941 None:intergenic 40.0%
TATATACGGGCAGTATTTCC+AGG - Chr4:77015743-77015762 None:intergenic 40.0%
TCAACTTGCAGATCCTTTCT+TGG - Chr4:77014135-77014154 None:intergenic 40.0%
TCTGTTCCTATGGAAATGGA+TGG + Chr4:77016272-77016291 MsG0480022815.01.T01:CDS 40.0%
TCTTAGTGCTCAATATGCGT+TGG - Chr4:77013044-77013063 None:intergenic 40.0%
TGACCCTATCGTACATGAAA+TGG + Chr4:77014725-77014744 MsG0480022815.01.T01:intron 40.0%
TGCTGCATTGTTCAGAGATT+TGG + Chr4:77015487-77015506 MsG0480022815.01.T01:CDS 40.0%
TGCTTCTTTATCCAGTGGAT+TGG + Chr4:77016115-77016134 MsG0480022815.01.T01:CDS 40.0%
TGTATGGGAGTTTGATAAGG+TGG + Chr4:77013924-77013943 MsG0480022815.01.T01:intron 40.0%
TGTGTAATGACTCCAAGACA+GGG + Chr4:77016843-77016862 MsG0480022815.01.T01:CDS 40.0%
TTCAATCTTCAAGCGTGAGA+TGG - Chr4:77015528-77015547 None:intergenic 40.0%
TTCAGTAGAGGTAGAAGAGT+AGG - Chr4:77015386-77015405 None:intergenic 40.0%
TTCCTATGGAAATGGATGGT+GGG + Chr4:77016276-77016295 MsG0480022815.01.T01:CDS 40.0%
TTTGATGTCCGTATGCATGT+TGG + Chr4:77014340-77014359 MsG0480022815.01.T01:intron 40.0%
! AGTAGAAGTGTGCATATGGT+TGG + Chr4:77015599-77015618 MsG0480022815.01.T01:CDS 40.0%
! ATTCTTCTTTTCCCCTGTCT+TGG - Chr4:77016858-77016877 None:intergenic 40.0%
! CTCAAAAATTGGTTCTCCTG+TGG + Chr4:77016211-77016230 MsG0480022815.01.T01:CDS 40.0%
! GCATTTCTTTTCTCTGCACA+GGG + Chr4:77014045-77014064 MsG0480022815.01.T01:intron 40.0%
! GTCTAGTAGAAGTGTGCATA+TGG + Chr4:77015595-77015614 MsG0480022815.01.T01:CDS 40.0%
! GTTCTCCACCATTTTCAACA+TGG - Chr4:77015556-77015575 None:intergenic 40.0%
! TCCTATCTTTTACAGCCTGA+AGG - Chr4:77016025-77016044 None:intergenic 40.0%
! TCTTGGACTTTTGCACAAGT+TGG + Chr4:77014873-77014892 MsG0480022815.01.T01:intron 40.0%
! TTACAAGATTGCGGTTTGCT+AGG + Chr4:77014937-77014956 MsG0480022815.01.T01:intron 40.0%
!! AAGGATCTGCAAGTTGATGA+CGG + Chr4:77014138-77014157 MsG0480022815.01.T01:CDS 40.0%
!! ACAGAAACAGGAGGCATTAA+AGG - Chr4:77016500-77016519 None:intergenic 40.0%
!! ATCAGAAGTGCTTAGTTCAG+AGG - Chr4:77016767-77016786 None:intergenic 40.0%
!! GTATTGACTGCTGTTACATC+TGG + Chr4:77015197-77015216 MsG0480022815.01.T01:intron 40.0%
!! TACAAGATTGCGGTTTGCTA+GGG + Chr4:77014938-77014957 MsG0480022815.01.T01:intron 40.0%
!! TCATATTAAGTTGACCGGAG+TGG - Chr4:77014304-77014323 None:intergenic 40.0%
!! TCTGTAGTTCGTTCTGAAGA+AGG + Chr4:77017034-77017053 MsG0480022815.01.T01:CDS 40.0%
!! TTAATGCCTCCTGTTTCTGT+GGG + Chr4:77016500-77016519 MsG0480022815.01.T01:CDS 40.0%
!! TTCTAGTCTTGAAGGTGTCT+TGG + Chr4:77016702-77016721 MsG0480022815.01.T01:intron 40.0%
!! TTTAATGCCTCCTGTTTCTG+TGG + Chr4:77016499-77016518 MsG0480022815.01.T01:CDS 40.0%
!!! AATCCAGTTTTTGGTAGGAC+AGG + Chr4:77016974-77016993 MsG0480022815.01.T01:CDS 40.0%
!!! CGAGCAAAATATTTTGGTGG+TGG + Chr4:77015812-77015831 MsG0480022815.01.T01:intron 40.0%
!!! GCAAGTTGATGACGGTTTTT+TGG + Chr4:77014146-77014165 MsG0480022815.01.T01:CDS 40.0%
!!! TGATGACGGTTTTTTGGACT+CGG + Chr4:77014152-77014171 MsG0480022815.01.T01:CDS 40.0%
AAAAAGGGGTCATGGACTCA+TGG + Chr4:77013314-77013333 MsG0480022815.01.T01:intron 45.0%
AAAAGGGGTCATGGACTCAT+GGG + Chr4:77013315-77013334 MsG0480022815.01.T01:intron 45.0%
AAGACCAGCTGCATCTAAAC+CGG - Chr4:77015899-77015918 None:intergenic 45.0%
ACACCTGCTTCTTTATCCAG+TGG + Chr4:77016110-77016129 MsG0480022815.01.T01:CDS 45.0%
ACAGGGAGACTTTCATCACT+GGG + Chr4:77014062-77014081 MsG0480022815.01.T01:intron 45.0%
ACATTGGGGGATGCATGTAA+TGG - Chr4:77015973-77015992 None:intergenic 45.0%
ACCTGTACCAGATACATACC+GGG + Chr4:77012704-77012723 MsG0480022815.01.T01:intron 45.0%
AGTCAATACCGAAGGTTGAC+GGG - Chr4:77015186-77015205 None:intergenic 45.0%
ATAGGTACGGGTAGGATATC+GGG + Chr4:77012488-77012507 MsG0480022815.01.T01:intron 45.0%
CAACACCTTTGTCTGCTTTG+TGG - Chr4:77016674-77016693 None:intergenic 45.0%
CAGCCCATTTCATGTACGAT+AGG - Chr4:77014732-77014751 None:intergenic 45.0%
CAGTCAATACCGAAGGTTGA+CGG - Chr4:77015187-77015206 None:intergenic 45.0%
CATAGGTACGGGTAGGATAT+CGG + Chr4:77012487-77012506 MsG0480022815.01.T01:intron 45.0%
CTATTGCGTGCTATATCCCT+TGG + Chr4:77015707-77015726 MsG0480022815.01.T01:CDS 45.0%
CTGTGTAATGACTCCAAGAC+AGG + Chr4:77016842-77016861 MsG0480022815.01.T01:CDS 45.0%
GAACCTGTCCTACCAAAAAC+TGG - Chr4:77016980-77016999 None:intergenic 45.0%
GAGTTTGAAGAGCAAGGATC+GGG - Chr4:77016254-77016273 None:intergenic 45.0%
GATTTGCAACCCTTCAACCA+GGG - Chr4:77014815-77014834 None:intergenic 45.0%
GCATTGTTCAGAGATTTGGG+AGG + Chr4:77015491-77015510 MsG0480022815.01.T01:CDS 45.0%
GCCAAAAAAGCAATCGCTCT+AGG - Chr4:77013389-77013408 None:intergenic 45.0%
GCCTTCAGGCTGTAAAAGAT+AGG + Chr4:77016021-77016040 MsG0480022815.01.T01:CDS 45.0%
GGAACAGAGTTTGAAGAGCA+AGG - Chr4:77016260-77016279 None:intergenic 45.0%
GGATAAGGCTCAGACATTGT+TGG + Chr4:77013428-77013447 MsG0480022815.01.T01:intron 45.0%
GGTTTCACTACTGAGCTATG+AGG + Chr4:77015096-77015115 MsG0480022815.01.T01:intron 45.0%
GTAACAGCAGTCAATACCGA+AGG - Chr4:77015194-77015213 None:intergenic 45.0%
GTGTAATGACTCCAAGACAG+GGG + Chr4:77016844-77016863 MsG0480022815.01.T01:CDS 45.0%
GTTCCTATGGAAATGGATGG+TGG + Chr4:77016275-77016294 MsG0480022815.01.T01:CDS 45.0%
GTTTGCTCTTGCACAAGGAT+GGG + Chr4:77014650-77014669 MsG0480022815.01.T01:intron 45.0%
TACATGCATCCCCCAATGTT+TGG + Chr4:77015974-77015993 MsG0480022815.01.T01:CDS 45.0%
TAGTAGTGTAAGTTCAGGGC+AGG + Chr4:77013017-77013036 MsG0480022815.01.T01:intron 45.0%
TATACGGGCAGTATTTCCAG+GGG - Chr4:77015741-77015760 None:intergenic 45.0%
TCAACCAACATATCCACTCC+AGG - Chr4:77016176-77016195 None:intergenic 45.0%
TCCTATGGAAATGGATGGTG+GGG + Chr4:77016277-77016296 MsG0480022815.01.T01:CDS 45.0%
TGAACCCACAAAGCAGACAA+AGG + Chr4:77016666-77016685 MsG0480022815.01.T01:intron 45.0%
TGACTGCTGTTACATCTGGT+GGG + Chr4:77015201-77015220 MsG0480022815.01.T01:intron 45.0%
TGAGCTATGAGGATGCAGTT+TGG + Chr4:77015107-77015126 MsG0480022815.01.T01:intron 45.0%
TGTGTTGGGTTCTTCATCGT+CGG + Chr4:77015328-77015347 MsG0480022815.01.T01:CDS 45.0%
TGTTTGCTCTTGCACAAGGA+TGG + Chr4:77014649-77014668 MsG0480022815.01.T01:intron 45.0%
TTGACTGCTGTTACATCTGG+TGG + Chr4:77015200-77015219 MsG0480022815.01.T01:intron 45.0%
TTTGCTCTTGCACAAGGATG+GGG + Chr4:77014651-77014670 MsG0480022815.01.T01:intron 45.0%
TTTGTGACTCTCCCATACAC+TGG - Chr4:77012613-77012632 None:intergenic 45.0%
! AAAAAGTGGCGAAGTGTCCA+GGG - Chr4:77014576-77014595 None:intergenic 45.0%
! CAATGTCTGAGCCTTATCCA+AGG - Chr4:77013427-77013446 None:intergenic 45.0%
! GGCATTTCTTTTCTCTGCAC+AGG + Chr4:77014044-77014063 MsG0480022815.01.T01:intron 45.0%
! TCAACCAGAAGCAAGTGTTG+TGG - Chr4:77015419-77015438 None:intergenic 45.0%
! TCAGCATTGAAAACGAAGCC+AGG - Chr4:77015055-77015074 None:intergenic 45.0%
! TGATTTGCAACCCTTCAACC+AGG - Chr4:77014816-77014835 None:intergenic 45.0%
! TTTTCCGGTTTAGATGCAGC+TGG + Chr4:77015892-77015911 MsG0480022815.01.T01:intron 45.0%
!! AGAACGGCTTCTTTTGGGAA+AGG - Chr4:77014183-77014202 None:intergenic 45.0%
!! TAATGCCTCCTGTTTCTGTG+GGG + Chr4:77016501-77016520 MsG0480022815.01.T01:CDS 45.0%
!!! GCCTAGAGCGATTGCTTTTT+TGG + Chr4:77013385-77013404 MsG0480022815.01.T01:intron 45.0%
!!! GCTAGGGCTTTTGGTTCTTT+GGG + Chr4:77014954-77014973 MsG0480022815.01.T01:intron 45.0%
!!! TGCTAGGGCTTTTGGTTCTT+TGG + Chr4:77014953-77014972 MsG0480022815.01.T01:intron 45.0%
ACCAGATACATACCGGGTAC+AGG + Chr4:77012710-77012729 MsG0480022815.01.T01:intron 50.0%
ACCCGGTATGTATCTGGTAC+AGG - Chr4:77012708-77012727 None:intergenic 50.0%
ACCTGTACCCGGTATGTATC+TGG - Chr4:77012714-77012733 None:intergenic 50.0%
ACGATAGGGTCACAGCCATT+AGG - Chr4:77014717-77014736 None:intergenic 50.0%
ACTCCTCGTTGATCAGCTCA+GGG - Chr4:77016352-77016371 None:intergenic 50.0%
AGGATCGGGACACAAAGATG+AGG - Chr4:77016240-77016259 None:intergenic 50.0%
AGTGCTTAGTTCAGAGGCCA+CGG - Chr4:77016761-77016780 None:intergenic 50.0%
CACAAAGATGAGGGATCCAC+AGG - Chr4:77016230-77016249 None:intergenic 50.0%
CACAGGGAGACTTTCATCAC+TGG + Chr4:77014061-77014080 MsG0480022815.01.T01:intron 50.0%
CCTTATCCAAGGCAGGCTAA+GGG - Chr4:77013416-77013435 None:intergenic 50.0%
GAGAAAACGTGCACTCGAAG+TGG + Chr4:77012174-77012193 MsG0480022815.01.T01:CDS 50.0%
GGATCGGGACACAAAGATGA+GGG - Chr4:77016239-77016258 None:intergenic 50.0%
GTGTTGGGTTCTTCATCGTC+GGG + Chr4:77015329-77015348 MsG0480022815.01.T01:CDS 50.0%
TACTGATCCAGACGTGGTTG+AGG + Chr4:77014547-77014566 MsG0480022815.01.T01:intron 50.0%
TCCCCACCATCCATTTCCAT+AGG - Chr4:77016281-77016300 None:intergenic 50.0%
TCTCTGAACAATGCAGCAGC+TGG - Chr4:77015485-77015504 None:intergenic 50.0%
TGCTTCTACTGATCCAGACG+TGG + Chr4:77014541-77014560 MsG0480022815.01.T01:intron 50.0%
TTGCTTCGCAACCTAGCACT+CGG + Chr4:77013559-77013578 MsG0480022815.01.T01:intron 50.0%
! AACGGTGAAGTACCTGTACC+CGG - Chr4:77012725-77012744 None:intergenic 50.0%
! CAAAAAGTGGCGAAGTGTCC+AGG - Chr4:77014577-77014596 None:intergenic 50.0%
! CTGGTCTTCCATCTGCTTCT+TGG + Chr4:77015911-77015930 MsG0480022815.01.T01:CDS 50.0%
! TGGTGGAGTTTTCTCGCTTG+CGG + Chr4:77015829-77015848 MsG0480022815.01.T01:intron 50.0%
!! ACGGCTTCTTTTGGGAAAGG+AGG - Chr4:77014180-77014199 None:intergenic 50.0%
!!! TTGCGGTTTGCTAGGGCTTT+TGG + Chr4:77014945-77014964 MsG0480022815.01.T01:intron 50.0%
AAGGTTGACGGGAACGATCG+TGG - Chr4:77015175-77015194 None:intergenic 55.0%
AAGGTTTGCACCGCCGTACT+CGG + Chr4:77017053-77017072 MsG0480022815.01.T01:CDS 55.0%
ACATCAAAGGGGCTGAACCC+TGG + Chr4:77014795-77014814 MsG0480022815.01.T01:intron 55.0%
AGGATGGGGTGGAAAGGAAG+AGG + Chr4:77014665-77014684 MsG0480022815.01.T01:intron 55.0%
ATGCTCTGCCCCACAGAAAC+AGG - Chr4:77016512-77016531 None:intergenic 55.0%
CCCTTAGCCTGCCTTGGATA+AGG + Chr4:77013413-77013432 MsG0480022815.01.T01:intron 55.0%
CGATCGTTCCCGTCAACCTT+CGG + Chr4:77015175-77015194 MsG0480022815.01.T01:intron 55.0%
CTCGTTCAATGCCGAGTGCT+AGG - Chr4:77013573-77013592 None:intergenic 55.0%
GACTCCTCGTTGATCAGCTC+AGG - Chr4:77016353-77016372 None:intergenic 55.0%
GCCTTATCCAAGGCAGGCTA+AGG - Chr4:77013417-77013436 None:intergenic 55.0%
GGATGGGGTGGAAAGGAAGA+GGG + Chr4:77014666-77014685 MsG0480022815.01.T01:intron 55.0%
GGTGGAAAGGAAGAGGGACT+TGG + Chr4:77014672-77014691 MsG0480022815.01.T01:intron 55.0%
GTTGAAGGGAACAACTGCCG+TGG + Chr4:77016741-77016760 MsG0480022815.01.T01:intron 55.0%
TCCAAGGCAGGCTAAGGGTA+AGG - Chr4:77013411-77013430 None:intergenic 55.0%
TGACCCTGAGCTGATCAACG+AGG + Chr4:77016346-77016365 MsG0480022815.01.T01:CDS 55.0%
TGCACAAGGATGGGGTGGAA+AGG + Chr4:77014659-77014678 MsG0480022815.01.T01:intron 55.0%
TGGGCCTGGAGTGGATATGT+TGG + Chr4:77016169-77016188 MsG0480022815.01.T01:CDS 55.0%
TGTTCTGCTATGCGCGAAGC+AGG + Chr4:77015353-77015372 MsG0480022815.01.T01:CDS 55.0%
! GGCAGTATTTCCAGGGGCAT+AGG - Chr4:77015735-77015754 None:intergenic 55.0%
! GTCTGAGCCTTATCCAAGGC+AGG - Chr4:77013423-77013442 None:intergenic 55.0%
! GTTACATCTGGTGGGCATCG+TGG + Chr4:77015209-77015228 MsG0480022815.01.T01:intron 55.0%
! TCCAGGGGCATAGGTTCCAA+GGG - Chr4:77015726-77015745 None:intergenic 55.0%
! TTCCAGGGGCATAGGTTCCA+AGG - Chr4:77015727-77015746 None:intergenic 55.0%
AATCACGCCCTCCACTCCAC+AGG - Chr4:77017009-77017028 None:intergenic 60.0%
AGACGTGGTTGAGGCTACCC+TGG + Chr4:77014556-77014575 MsG0480022815.01.T01:intron 60.0%
AGGGGCTGAACCCTGGTTGA+AGG + Chr4:77014802-77014821 MsG0480022815.01.T01:intron 60.0%
AGGGGTCATGGACTCATGGG+AGG + Chr4:77013318-77013337 MsG0480022815.01.T01:intron 60.0%
AGGGTAGCCTCAACCACGTC+TGG - Chr4:77014557-77014576 None:intergenic 60.0%
ATCACGCCCTCCACTCCACA+GGG - Chr4:77017008-77017027 None:intergenic 60.0%
CACGTTCCCTGTGGAGTGGA+GGG + Chr4:77016999-77017018 MsG0480022815.01.T01:CDS 60.0%
CAGGTCATCAGCGTCACCAC+AGG - Chr4:77015036-77015055 None:intergenic 60.0%
CTATCCCTTGCCGAGTACGG+CGG - Chr4:77017066-77017085 None:intergenic 60.0%
CTCTGCCCCACAGAAACAGG+AGG - Chr4:77016509-77016528 None:intergenic 60.0%
GCCTTACCCTTAGCCTGCCT+TGG + Chr4:77013407-77013426 MsG0480022815.01.T01:intron 60.0%
GCTCTTGCACAAGGATGGGG+TGG + Chr4:77014654-77014673 MsG0480022815.01.T01:intron 60.0%
GGACAGGTTCACGTTCCCTG+TGG + Chr4:77016990-77017009 MsG0480022815.01.T01:CDS 60.0%
GGGCTATCCCTTGCCGAGTA+CGG - Chr4:77017069-77017088 None:intergenic 60.0%
GGGGCTGAACCCTGGTTGAA+GGG + Chr4:77014803-77014822 MsG0480022815.01.T01:intron 60.0%
GGTTCACGTTCCCTGTGGAG+TGG + Chr4:77016995-77017014 MsG0480022815.01.T01:CDS 60.0%
TCACGTTCCCTGTGGAGTGG+AGG + Chr4:77016998-77017017 MsG0480022815.01.T01:CDS 60.0%
TCCCTTGGAACCTATGCCCC+TGG + Chr4:77015722-77015741 MsG0480022815.01.T01:CDS 60.0%
TGGACTCATGGGAGGTCCAG+AGG + Chr4:77013326-77013345 MsG0480022815.01.T01:intron 60.0%
! CTGTGGTGACGCTGATGACC+TGG + Chr4:77015034-77015053 MsG0480022815.01.T01:intron 60.0%
AGTCCTCCCACCTCGCATGC+GGG - Chr4:77017089-77017108 None:intergenic 65.0%
CAAGGGATAGCCCGCATGCG+AGG + Chr4:77017076-77017095 MsG0480022815.01.T01:CDS 65.0%
CAGTCCTCCCACCTCGCATG+CGG - Chr4:77017090-77017109 None:intergenic 65.0%
GGATAGCCCGCATGCGAGGT+GGG + Chr4:77017080-77017099 MsG0480022815.01.T01:CDS 65.0%
TGCACCGCCGTACTCGGCAA+GGG + Chr4:77017059-77017078 MsG0480022815.01.T01:CDS 65.0%
TGGGAGGACTGCTCGTCGCT+TGG + Chr4:77017099-77017118 MsG0480022815.01.T01:CDS 65.0%
TTGCACCGCCGTACTCGGCA+AGG + Chr4:77017058-77017077 MsG0480022815.01.T01:CDS 65.0%
GGGATAGCCCGCATGCGAGG+TGG + Chr4:77017079-77017098 MsG0480022815.01.T01:CDS 70.0%
TAGCCCGCATGCGAGGTGGG+AGG + Chr4:77017083-77017102 MsG0480022815.01.T01:CDS 70.0%
Chromosome Type Strat End Strand Name
Chr4 gene 77012163 77017153 77012163 ID=MsG0480022815.01;Name=MsG0480022815.01
Chr4 mRNA 77012163 77017153 77012163 ID=MsG0480022815.01.T01;Parent=MsG0480022815.01;Name=MsG0480022815.01.T01;_AED=0.49;_eAED=0.49;_QI=0|0|0|1|1|1|5|0|606
Chr4 exon 77012163 77012195 77012163 ID=MsG0480022815.01.T01:exon:19880;Parent=MsG0480022815.01.T01
Chr4 exon 77014066 77014272 77014066 ID=MsG0480022815.01.T01:exon:19881;Parent=MsG0480022815.01.T01
Chr4 exon 77015296 77015789 77015296 ID=MsG0480022815.01.T01:exon:19882;Parent=MsG0480022815.01.T01
Chr4 exon 77015905 77016640 77015905 ID=MsG0480022815.01.T01:exon:19883;Parent=MsG0480022815.01.T01
Chr4 exon 77016803 77017153 77016803 ID=MsG0480022815.01.T01:exon:19884;Parent=MsG0480022815.01.T01
Chr4 CDS 77012163 77012195 77012163 ID=MsG0480022815.01.T01:cds;Parent=MsG0480022815.01.T01
Chr4 CDS 77014066 77014272 77014066 ID=MsG0480022815.01.T01:cds;Parent=MsG0480022815.01.T01
Chr4 CDS 77015296 77015789 77015296 ID=MsG0480022815.01.T01:cds;Parent=MsG0480022815.01.T01
Chr4 CDS 77015905 77016640 77015905 ID=MsG0480022815.01.T01:cds;Parent=MsG0480022815.01.T01
Chr4 CDS 77016803 77017153 77016803 ID=MsG0480022815.01.T01:cds;Parent=MsG0480022815.01.T01
Gene Sequence

>MsG0480022815.01.T01

ATGAGGTTAAAGAGAAAACGTGCACTCGAAGTGGGAGACTTTCATCACTGGGCTGATCTTTTTAATCATTTTGATTCATTCTTTGAGAAGTATGTAAAACCAAGAAAGGATCTGCAAGTTGATGACGGTTTTTTGGACTCGGATCCTCCTTTCCCAAAAGAAGCCGTTCTTCAAATTCTTCGTGTCATTAGAATAATTTTGGATAATTGCCCAAATAAGCATTTCTACAGTTCATACGAGTTCATTTTGCTGAAGCTCTTTATCTCTGTAACTGTGTTGGGTTCTTCATCGTCGGGATGTTCTGCTATGCGCGAAGCAGGATTCATTCCTACTCTTCTACCTCTACTGAAAGATACAAATCCACAACACTTGCTTCTGGTTGAAAAAGCTGTGCGCATTTTAGAAGCTTTTATGGATTACAGTAATCCAGCTGCTGCATTGTTCAGAGATTTGGGAGGTTTAGATGATACCATCTCACGCTTGAAGATTGAAGTATCCCATGTTGAAAATGGTGGAGAACAGCCAGATGAAAATTCCAAGTCTAGTAGAAGTGTGCATATGGTTGGAGATTCTTCAGTTTTGCTAAATGACATGCAGCCATTGTATTCTGAACCATTAATTTCTTATCACCGGAAATTGTTGATGAAAGCTCTATTGCGTGCTATATCCCTTGGAACCTATGCCCCTGGAAATACTGCCCGTATATATGAATCTGAAGATAATGTGTTGCCTCAATGCAGCTGGTCTTCCATCTGCTTCTTGGATGCTATAATGGATGATGTACTATACTCTTCAGAAGCCATTACATGCATCCCCCAATGTTTGGATGCTTTATGCTTAAACAGTAATGGCCTTCAGGCTGTAAAAGATAGGAATTCTTTGAGGTGTTTTGTGAAGGTGTTTACTTCCAGAACATATTTGCGAGCTCTTACAGGGGACACACCTGCTTCTTTATCCAGTGGATTGGATGAATTAATGCGCCACGCTTCTTCGTTACGTGGGCCTGGAGTGGATATGTTGGTTGAGATTCTAGAAACTATCTCAAAAATTGGTTCTCCTGTGGATCCCTCATCTTTGTGTCCCGATCCTTGCTCTTCAAACTCTGTTCCTATGGAAATGGATGGTGGGGACAAGAATGTGATCTTGCCTGATAATAAGGAGTCATTGAAGGCAGATGACCCTGAGCTGATCAACGAGGAGTCTTATCTTCCAGATTGTGTGAACAATGTTGCTCGTCTGCTTGAGACAATTCTACAGAATGCTGACACATGTCGAATATTTGTTGAGAAAAAGGGGATTGAAGCTATTCTCCAGTTATTTACGCTGCCTTTAATGCCTCCTGTTTCTGTGGGGCAGAGCATCTCTGTTGCCTTCAAAAACTTTTCTCAACAACATTATGCTTCTCTTGCCCGAGCTTTATGCTCGTTTTTAAGGGAACATCTGAAATCTACCAATGAGCTTTTATATTCAATATTGGAGAACTTACAAGAAATAATTTGGCAAATATCTCTGTGTAATGACTCCAAGACAGGGGAAAAGAAGAATAATGATCAAGAACATGATGTTTCACAAGCACCTTCATCTACTGTTGTTGAAAGAGAGAGTGATGATGACACAAATATGCAGACCATTAGGTACACAAATCCAGTTTTTGGTAGGACAGGTTCACGTTCCCTGTGGAGTGGAGGGCGTGATTTTGTTTCTGTAGTTCGTTCTGAAGAAGGTTTGCACCGCCGTACTCGGCAAGGGATAGCCCGCATGCGAGGTGGGAGGACTGCTCGTCGCTTGGAAGCTTTAAACATTGACTTTGAATCATTCTAG
Protein sequence

>MsG0480022815.01.T01

MRLKRKRALEVGDFHHWADLFNHFDSFFEKYVKPRKDLQVDDGFLDSDPPFPKEAVLQILRVIRIILDNCPNKHFYSSYEFILLKLFISVTVLGSSSSGCSAMREAGFIPTLLPLLKDTNPQHLLLVEKAVRILEAFMDYSNPAAALFRDLGGLDDTISRLKIEVSHVENGGEQPDENSKSSRSVHMVGDSSVLLNDMQPLYSEPLISYHRKLLMKALLRAISLGTYAPGNTARIYESEDNVLPQCSWSSICFLDAIMDDVLYSSEAITCIPQCLDALCLNSNGLQAVKDRNSLRCFVKVFTSRTYLRALTGDTPASLSSGLDELMRHASSLRGPGVDMLVEILETISKIGSPVDPSSLCPDPCSSNSVPMEMDGGDKNVILPDNKESLKADDPELINEESYLPDCVNNVARLLETILQNADTCRIFVEKKGIEAILQLFTLPLMPPVSVGQSISVAFKNFSQQHYASLARALCSFLREHLKSTNELLYSILENLQEIIWQISLCNDSKTGEKKNNDQEHDVSQAPSSTVVERESDDDTNMQTIRYTNPVFGRTGSRSLWSGGRDFVSVVRSEEGLHRRTRQGIARMRGGRTARRLEALNIDFESF*