AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180003863.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180003863.01.T01 MTR_1g070230 61.682 321 40 4 1 258 53 353 3.44e-124 357
MsG0180003863.01.T01 MTR_2g087590 38.245 319 114 6 2 257 61 359 2.68e-67 213
MsG0180003863.01.T01 MTR_2g098110 24.688 320 145 9 2 253 377 668 1.61e-13 70.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180003863.01.T01 AT3G44160 36.050 319 121 5 2 257 61 359 2.22e-54 179
MsG0180003863.01.T01 AT3G48620 27.181 298 124 5 49 257 25 318 2.60e-23 97.1
MsG0180003863.01.T01 AT5G19620 23.585 318 151 7 2 253 437 728 3.58e-14 72.4

Find 55 sgRNAs with CRISPR-Local

Find 164 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATCAAAGATCTTTATATTT+TGG 0.117147 1:+69373880 MsG0180003863.01.T01:CDS
TATGATTCAAATCTCTTAAT+TGG 0.169272 1:+69371466 MsG0180003863.01.T01:CDS
GACTGGTAGCATTGATAATA+TGG 0.189718 1:-69373254 None:intergenic
CAAATCTCTTAATTGGTTAT+AGG 0.196690 1:+69371473 MsG0180003863.01.T01:CDS
ATGAGCCTTCAACTTCTAAT+TGG 0.244020 1:+69371764 MsG0180003863.01.T01:CDS
CCAGGATCTGGATATGGAAT+TGG 0.301715 1:+69373793 MsG0180003863.01.T01:CDS
TCAACACTCACTAACTATTC+AGG 0.334129 1:+69371519 MsG0180003863.01.T01:CDS
TGACCAAGACATATAGGTTT+AGG 0.353078 1:-69371499 None:intergenic
TTGAGTGGTGGTTCAATTGT+AGG 0.353916 1:+69372926 MsG0180003863.01.T01:CDS
CTGACTTGAATAGTAGTCAT+AGG 0.379293 1:+69373359 MsG0180003863.01.T01:CDS
GGTAAACCAGGATCTGGATA+TGG 0.381836 1:+69373787 MsG0180003863.01.T01:CDS
TCAAACCTTGGCTTACAGAT+TGG 0.384805 1:-69371708 None:intergenic
GGTTTACCATGCCTCTGTCC+TGG 0.385710 1:-69373772 None:intergenic
AATAGTAGTCATAGGGTTCC+TGG 0.389410 1:+69373367 MsG0180003863.01.T01:CDS
ATCACTATCATATTGTCATA+TGG 0.392972 1:-69372506 None:intergenic
TCTTTGATGAAAAGCATTGA+TGG 0.410805 1:-69373866 None:intergenic
TGGGGTCCCAACAGTGTTAG+AGG 0.411176 1:+69372979 MsG0180003863.01.T01:CDS
ATGGAATTGGGTGTGGCATT+CGG 0.418201 1:+69373806 MsG0180003863.01.T01:CDS
CAAACCTTGGCTTACAGATT+GGG 0.418267 1:-69371707 None:intergenic
GAGTGTTGACCAAGACATAT+AGG 0.431154 1:-69371505 None:intergenic
TTTCCTGAAGTTAGAATCCA+TGG 0.435995 1:+69371664 MsG0180003863.01.T01:CDS
CCCAACAGTGTTAGAGGCTA+TGG 0.454768 1:+69372985 MsG0180003863.01.T01:CDS
ATTCCATGGATTCTAACTTC+AGG 0.455494 1:-69371667 None:intergenic
GTACTCCAATTAGAAGTTGA+AGG 0.457326 1:-69371769 None:intergenic
AGGTTGTCAAAATTGTCAAT+TGG 0.463768 1:+69371730 MsG0180003863.01.T01:CDS
CAGGATCTGGATATGGAATT+GGG 0.464787 1:+69373794 MsG0180003863.01.T01:CDS
AATTGTTCATGGGAATTCCA+TGG 0.468754 1:-69371681 None:intergenic
AGGCATGGTAAACCAGGATC+TGG 0.475514 1:+69373781 MsG0180003863.01.T01:CDS
ATGAGTATTGCAGGAAATCC+AGG 0.478431 1:+69373754 MsG0180003863.01.T01:intron
ACCATAGCCTCTAACACTGT+TGG 0.479737 1:-69372986 None:intergenic
TCTAATTGGAGTACTTCAAC+CGG 0.485792 1:+69371778 MsG0180003863.01.T01:CDS
AATCTGTAAGCCAAGGTTTG+AGG 0.487329 1:+69371710 MsG0180003863.01.T01:CDS
GTCAGCATGGCATCAATGAC+TGG 0.502788 1:-69373271 None:intergenic
CCATAGCCTCTAACACTGTT+GGG 0.504070 1:-69372985 None:intergenic
CCAATTCCATATCCAGATCC+TGG 0.508355 1:-69373793 None:intergenic
TATCCTAAACCTATATGTCT+TGG 0.516886 1:+69371496 MsG0180003863.01.T01:CDS
GGCTATGGTGAAGGTGCAGT+TGG 0.528504 1:+69373000 MsG0180003863.01.T01:CDS
ACTGGTAGCATTGATAATAT+GGG 0.533435 1:-69373253 None:intergenic
GGACAGAGGCATGGTAAACC+AGG 0.543219 1:+69373775 MsG0180003863.01.T01:CDS
CATTCGGTTCAAAACCAAGC+TGG 0.555738 1:+69373822 MsG0180003863.01.T01:CDS
TGACTTGAATAGTAGTCATA+GGG 0.575648 1:+69373360 MsG0180003863.01.T01:CDS
TACAAACTTAAAGTATACAC+CGG 0.583211 1:-69371797 None:intergenic
TTGCAGAACAAGAAACTGAC+AGG 0.584368 1:+69373313 MsG0180003863.01.T01:CDS
GTGACATGCTTGATGTATCA+TGG 0.588327 1:+69371431 None:intergenic
AGTAAAGAACATGGTCAGCA+TGG 0.589936 1:-69373284 None:intergenic
TCTGGATATGGAATTGGGTG+TGG 0.593258 1:+69373799 MsG0180003863.01.T01:CDS
TTATCTGGCAGGTTGAGTGG+TGG 0.595086 1:+69372914 MsG0180003863.01.T01:intron
CCAATTGCAAAAGCTTGATG+TGG 0.614502 1:-69372959 None:intergenic
AGTGTTAGAGGCTATGGTGA+AGG 0.620375 1:+69372991 MsG0180003863.01.T01:CDS
CAAGAATTGAGTAAAGAACA+TGG 0.625930 1:-69373293 None:intergenic
GCTTGATGTATCATGGCACA+AGG 0.631329 1:+69371438 MsG0180003863.01.T01:CDS
TCAAGTCAGATCCACAGTCA+AGG 0.635469 1:-69373345 None:intergenic
GGAAATCCAGGACAGAGGCA+TGG 0.645382 1:+69373766 MsG0180003863.01.T01:intron
CTTGATGTATCATGGCACAA+GGG 0.691998 1:+69371439 MsG0180003863.01.T01:CDS
TTGCAGGAAATCCAGGACAG+AGG 0.704121 1:+69373761 MsG0180003863.01.T01:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAATTTAAATCTATTGA+AGG - Chr1:69372717-69372736 None:intergenic 10.0%
!!! AATAATTATTGTTATTATCA+TGG + Chr1:69373463-69373482 MsG0180003863.01.T01:intron 10.0%
!!! GTTAAATAAATGATTTTATA+TGG - Chr1:69373660-69373679 None:intergenic 10.0%
!!! TAAAATACTTTATTTTGAAA+CGG + Chr1:69373423-69373442 MsG0180003863.01.T01:intron 10.0%
!!! TTTTTATTATTAGTTCAATA+AGG - Chr1:69373096-69373115 None:intergenic 10.0%
!! AATGAATTAATTGAACATAA+TGG - Chr1:69373529-69373548 None:intergenic 15.0%
!! AATTCATTCAAGTAATAATA+CGG - Chr1:69371974-69371993 None:intergenic 15.0%
!!! AAAGAATATCTTTTCTATTA+TGG - Chr1:69372216-69372235 None:intergenic 15.0%
!!! AAATAAATGATTTTATATGG+AGG - Chr1:69373657-69373676 None:intergenic 15.0%
!!! AAATTCTAGAATTAAGATTA+AGG - Chr1:69373683-69373702 None:intergenic 15.0%
!!! AATATTTTCATCAATATCAT+AGG - Chr1:69373215-69373234 None:intergenic 15.0%
!!! AATTCTAGAATTAAGATTAA+GGG - Chr1:69373682-69373701 None:intergenic 15.0%
!!! TTTAAATTTTTTGCTTCAAA+AGG + Chr1:69372725-69372744 MsG0180003863.01.T01:intron 15.0%
!!! TTTTATTTGTTTTTACTGAA+TGG + Chr1:69372257-69372276 MsG0180003863.01.T01:intron 15.0%
!! AAACTGAACTGAAAATAATT+TGG - Chr1:69372652-69372671 None:intergenic 20.0%
!! AAGCCATATATATAATACTA+TGG + Chr1:69372011-69372030 MsG0180003863.01.T01:intron 20.0%
!! ATAAAGCAAGAAACAAATTA+AGG + Chr1:69371601-69371620 MsG0180003863.01.T01:intron 20.0%
!! ATGAGTATTATATATACCAA+TGG - Chr1:69373069-69373088 None:intergenic 20.0%
!! TAAGTCAAATTTATTCAAAC+TGG - Chr1:69372456-69372475 None:intergenic 20.0%
!! TATGATTCAAATCTCTTAAT+TGG + Chr1:69371466-69371485 MsG0180003863.01.T01:CDS 20.0%
!! TGAGTATTATATATACCAAT+GGG - Chr1:69373068-69373087 None:intergenic 20.0%
!! TTATTAATTACAAGTTTGCA+TGG - Chr1:69372629-69372648 None:intergenic 20.0%
!! TTGATGAATTTATTTGATTC+AGG + Chr1:69372404-69372423 MsG0180003863.01.T01:intron 20.0%
!!! CATCAAAGATCTTTATATTT+TGG + Chr1:69373880-69373899 MsG0180003863.01.T01:CDS 20.0%
!!! TATTTTTAAATCTCATGTAG+TGG + Chr1:69372479-69372498 MsG0180003863.01.T01:intron 20.0%
!!! TCTCTTAAGAATTTTATCAT+TGG + Chr1:69372786-69372805 MsG0180003863.01.T01:intron 20.0%
! ACTGACATAAATAAATGTTG+AGG + Chr1:69372427-69372446 MsG0180003863.01.T01:intron 25.0%
! ATAGTGATATCATAGTACTT+TGG + Chr1:69373713-69373732 MsG0180003863.01.T01:intron 25.0%
! ATCACTATCATATTGTCATA+TGG - Chr1:69372509-69372528 None:intergenic 25.0%
! ATTCTTGATCATTATACAAG+AGG + Chr1:69372595-69372614 MsG0180003863.01.T01:intron 25.0%
! CAAATCTCTTAATTGGTTAT+AGG + Chr1:69371473-69371492 MsG0180003863.01.T01:CDS 25.0%
! GGACCATAGTATTATATATA+TGG - Chr1:69372017-69372036 None:intergenic 25.0%
! TACAAACTTAAAGTATACAC+CGG - Chr1:69371800-69371819 None:intergenic 25.0%
! TTCTTGATCATTATACAAGA+GGG + Chr1:69372596-69372615 MsG0180003863.01.T01:intron 25.0%
!! GATTTTATATGGAGGATATA+AGG - Chr1:69373649-69373668 None:intergenic 25.0%
!!! ACCACTTTTCAAATTTTATC+TGG + Chr1:69372899-69372918 MsG0180003863.01.T01:intron 25.0%
!!! ATATTTTGGAATTAGCAATC+TGG + Chr1:69373894-69373913 MsG0180003863.01.T01:CDS 25.0%
AAATTCTTAAGAGAATCACC+AGG - Chr1:69372780-69372799 None:intergenic 30.0%
AGATTGGGAAAAATTGTTCA+TGG - Chr1:69371695-69371714 None:intergenic 30.0%
AGGTTGTCAAAATTGTCAAT+TGG + Chr1:69371730-69371749 MsG0180003863.01.T01:CDS 30.0%
CAAGAATTGAGTAAAGAACA+TGG - Chr1:69373296-69373315 None:intergenic 30.0%
GATTGGGAAAAATTGTTCAT+GGG - Chr1:69371694-69371713 None:intergenic 30.0%
GCCAGATAAAATTTGAAAAG+TGG - Chr1:69372903-69372922 None:intergenic 30.0%
TATCCTAAACCTATATGTCT+TGG + Chr1:69371496-69371515 MsG0180003863.01.T01:CDS 30.0%
TATTAAATCACTAAACCGTC+CGG - Chr1:69372870-69372889 None:intergenic 30.0%
TCAGTTCAGTTTACAAATGA+TGG + Chr1:69372660-69372679 MsG0180003863.01.T01:intron 30.0%
TCTATTGAAGGTTAGCAATT+TGG - Chr1:69372705-69372724 None:intergenic 30.0%
TGACTTGAATAGTAGTCATA+GGG + Chr1:69373360-69373379 MsG0180003863.01.T01:CDS 30.0%
! AGTTTACAAATGATGGAACA+AGG + Chr1:69372667-69372686 MsG0180003863.01.T01:intron 30.0%
! CTTTTCAAATTTTATCTGGC+AGG + Chr1:69372903-69372922 MsG0180003863.01.T01:intron 30.0%
! GTTTACAAATGATGGAACAA+GGG + Chr1:69372668-69372687 MsG0180003863.01.T01:intron 30.0%
! TTCAATCTAATGAGTATTGC+AGG + Chr1:69373745-69373764 MsG0180003863.01.T01:intron 30.0%
! TTTGGCATCTAAAACTGAAT+TGG + Chr1:69373038-69373057 MsG0180003863.01.T01:intron 30.0%
!! AAATTTTATTTGAGCCAGCT+TGG - Chr1:69373839-69373858 None:intergenic 30.0%
!! ACTGGTAGCATTGATAATAT+GGG - Chr1:69373256-69373275 None:intergenic 30.0%
!! TCTTTGATGAAAAGCATTGA+TGG - Chr1:69373869-69373888 None:intergenic 30.0%
!!! CTAACAACTTTTTTTGCTAG+TGG + Chr1:69373189-69373208 MsG0180003863.01.T01:intron 30.0%
AATTGTTCATGGGAATTCCA+TGG - Chr1:69371684-69371703 None:intergenic 35.0%
ATCACTGAATGAAACTTACC+AGG - Chr1:69373388-69373407 None:intergenic 35.0%
ATGAGCCTTCAACTTCTAAT+TGG + Chr1:69371764-69371783 MsG0180003863.01.T01:CDS 35.0%
ATTCCATGGATTCTAACTTC+AGG - Chr1:69371670-69371689 None:intergenic 35.0%
CTAGATCTCTGCTTATAGAA+CGG - Chr1:69372360-69372379 None:intergenic 35.0%
GAGTTATGACATCTACAAAC+CGG + Chr1:69372824-69372843 MsG0180003863.01.T01:intron 35.0%
GATCATTTGTTTACGCAGTA+CGG + Chr1:69371907-69371926 MsG0180003863.01.T01:intron 35.0%
GTACTCCAATTAGAAGTTGA+AGG - Chr1:69371772-69371791 None:intergenic 35.0%
GTTCGATTTATCAATGACAG+CGG + Chr1:69372334-69372353 MsG0180003863.01.T01:intron 35.0%
TAGACTCAACAGTTAGTTGT+GGG - Chr1:69372102-69372121 None:intergenic 35.0%
TCAACACTCACTAACTATTC+AGG + Chr1:69371519-69371538 MsG0180003863.01.T01:CDS 35.0%
TCATCAAACCTGCAAGTTAA+TGG - Chr1:69372391-69372410 None:intergenic 35.0%
TCTATAAGCAGAGATCTAGA+TGG + Chr1:69372361-69372380 MsG0180003863.01.T01:intron 35.0%
TGACCAAGACATATAGGTTT+AGG - Chr1:69371502-69371521 None:intergenic 35.0%
TTAGACTCAACAGTTAGTTG+TGG - Chr1:69372103-69372122 None:intergenic 35.0%
TTTCCTGAAGTTAGAATCCA+TGG + Chr1:69371664-69371683 MsG0180003863.01.T01:CDS 35.0%
! ACATCAAGCTTTTGCAATTG+GGG + Chr1:69372961-69372980 MsG0180003863.01.T01:CDS 35.0%
! ATGTAGCATTGAGACAAACA+CGG - Chr1:69373601-69373620 None:intergenic 35.0%
! CACATCAAGCTTTTGCAATT+GGG + Chr1:69372960-69372979 MsG0180003863.01.T01:CDS 35.0%
! CTGACTTGAATAGTAGTCAT+AGG + Chr1:69373359-69373378 MsG0180003863.01.T01:CDS 35.0%
! TCTAATTGGAGTACTTCAAC+CGG + Chr1:69371778-69371797 MsG0180003863.01.T01:CDS 35.0%
!! ATTTTGACAACCTCAAACCT+TGG - Chr1:69371723-69371742 None:intergenic 35.0%
!! GACTGGTAGCATTGATAATA+TGG - Chr1:69373257-69373276 None:intergenic 35.0%
!! TCAGGAGTGTTGTTGTAATA+TGG - Chr1:69372038-69372057 None:intergenic 35.0%
!!! ATGGTTTTCCATTAACTTGC+AGG + Chr1:69372380-69372399 MsG0180003863.01.T01:intron 35.0%
AACTGAATTGGCAATCCCAT+TGG + Chr1:69373050-69373069 MsG0180003863.01.T01:intron 40.0%
AATAGTAGTCATAGGGTTCC+TGG + Chr1:69373367-69373386 MsG0180003863.01.T01:CDS 40.0%
AATCTGTAAGCCAAGGTTTG+AGG + Chr1:69371710-69371729 MsG0180003863.01.T01:CDS 40.0%
ACACAAACACACTTTGACAC+TGG - Chr1:69373566-69373585 None:intergenic 40.0%
AGACTCAACAGTTAGTTGTG+GGG - Chr1:69372101-69372120 None:intergenic 40.0%
AGTAAAGAACATGGTCAGCA+TGG - Chr1:69373287-69373306 None:intergenic 40.0%
ATGACATCTACAAACCGGAT+CGG + Chr1:69372829-69372848 MsG0180003863.01.T01:intron 40.0%
ATGGTTCATTGACACAGAAG+AGG - Chr1:69372197-69372216 None:intergenic 40.0%
CAAACCTTGGCTTACAGATT+GGG - Chr1:69371710-69371729 None:intergenic 40.0%
CAGGATCTGGATATGGAATT+GGG + Chr1:69373794-69373813 MsG0180003863.01.T01:CDS 40.0%
CCAATTGCAAAAGCTTGATG+TGG - Chr1:69372962-69372981 None:intergenic 40.0%
CTTGATGTATCATGGCACAA+GGG + Chr1:69371439-69371458 MsG0180003863.01.T01:CDS 40.0%
GCTTCAAAAGGAGTCAAACT+TGG + Chr1:69372737-69372756 MsG0180003863.01.T01:intron 40.0%
GGTTAGCAATTTGGTTGAAG+TGG - Chr1:69372696-69372715 None:intergenic 40.0%
GTTGCTGACATAGACATACT+TGG - Chr1:69371933-69371952 None:intergenic 40.0%
TCAAACCTTGGCTTACAGAT+TGG - Chr1:69371711-69371730 None:intergenic 40.0%
TGGAGGATATAAGGATGACT+TGG - Chr1:69373640-69373659 None:intergenic 40.0%
TGGTTCATTGACACAGAAGA+GGG - Chr1:69372196-69372215 None:intergenic 40.0%
TGTCTCAATGCTACATAGCA+TGG + Chr1:69373605-69373624 MsG0180003863.01.T01:intron 40.0%
TTGAGTGGTGGTTCAATTGT+AGG + Chr1:69372926-69372945 MsG0180003863.01.T01:CDS 40.0%
TTGCAGAACAAGAAACTGAC+AGG + Chr1:69373313-69373332 MsG0180003863.01.T01:CDS 40.0%
! AGGATATAAGGATGACTTGG+TGG - Chr1:69373637-69373656 None:intergenic 40.0%
! ATGAGTATTGCAGGAAATCC+AGG + Chr1:69373754-69373773 MsG0180003863.01.T01:intron 40.0%
! CCACATCAAGCTTTTGCAAT+TGG + Chr1:69372959-69372978 MsG0180003863.01.T01:CDS 40.0%
! TGGTTCGGGACAATCATATT+TGG + Chr1:69373020-69373039 MsG0180003863.01.T01:intron 40.0%
! TTTTCCCAATCTGTAAGCCA+AGG + Chr1:69371703-69371722 MsG0180003863.01.T01:CDS 40.0%
!! ATTTTATCTGGCAGGTTGAG+TGG + Chr1:69372911-69372930 MsG0180003863.01.T01:intron 40.0%
!! GAGTGTTGACCAAGACATAT+AGG - Chr1:69371508-69371527 None:intergenic 40.0%
!! GGATATAAGGATGACTTGGT+GGG - Chr1:69373636-69373655 None:intergenic 40.0%
!!! GGTGTTTTTTTCCTTGACTG+TGG + Chr1:69373334-69373353 MsG0180003863.01.T01:CDS 40.0%
AAATCACTAAACCGTCCGGT+CGG - Chr1:69372866-69372885 None:intergenic 45.0%
ACCATAGCCTCTAACACTGT+TGG - Chr1:69372989-69373008 None:intergenic 45.0%
ACTCCTGAATCATACCGTAG+AGG + Chr1:69372050-69372069 MsG0180003863.01.T01:intron 45.0%
AGTGTTAGAGGCTATGGTGA+AGG + Chr1:69372991-69373010 MsG0180003863.01.T01:CDS 45.0%
ATGGAATTGGGTGTGGCATT+CGG + Chr1:69373806-69373825 MsG0180003863.01.T01:CDS 45.0%
CACCAGGAAGATAATACAGC+TGG - Chr1:69372764-69372783 None:intergenic 45.0%
CATTCGGTTCAAAACCAAGC+TGG + Chr1:69373822-69373841 MsG0180003863.01.T01:CDS 45.0%
CCAATTCCATATCCAGATCC+TGG - Chr1:69373796-69373815 None:intergenic 45.0%
CCAGGATCTGGATATGGAAT+TGG + Chr1:69373793-69373812 MsG0180003863.01.T01:CDS 45.0%
CCATAGCCTCTAACACTGTT+GGG - Chr1:69372988-69373007 None:intergenic 45.0%
GACCAGCTGTATTATCTTCC+TGG + Chr1:69372759-69372778 MsG0180003863.01.T01:intron 45.0%
GCTTGATGTATCATGGCACA+AGG + Chr1:69371438-69371457 MsG0180003863.01.T01:CDS 45.0%
GGTAAACCAGGATCTGGATA+TGG + Chr1:69373787-69373806 MsG0180003863.01.T01:CDS 45.0%
GGTTCATTGACACAGAAGAG+GGG - Chr1:69372195-69372214 None:intergenic 45.0%
TAGCCTCTACGGTATGATTC+AGG - Chr1:69372056-69372075 None:intergenic 45.0%
TCAAGTCAGATCCACAGTCA+AGG - Chr1:69373348-69373367 None:intergenic 45.0%
TCTGGATATGGAATTGGGTG+TGG + Chr1:69373799-69373818 MsG0180003863.01.T01:CDS 45.0%
TTGAGCCAAATGCAAGAGCA+GGG + Chr1:69372130-69372149 MsG0180003863.01.T01:intron 45.0%
TTTGAGCCAAATGCAAGAGC+AGG + Chr1:69372129-69372148 MsG0180003863.01.T01:intron 45.0%
AGGCATGGTAAACCAGGATC+TGG + Chr1:69373781-69373800 MsG0180003863.01.T01:CDS 50.0%
AGTTAGTTGTGGGGCACAAC+TGG - Chr1:69372092-69372111 None:intergenic 50.0%
ATCTACAAACCGGATCGGAC+AGG + Chr1:69372834-69372853 MsG0180003863.01.T01:intron 50.0%
ATTGACACAGAAGAGGGGCA+AGG - Chr1:69372190-69372209 None:intergenic 50.0%
CCCAACAGTGTTAGAGGCTA+TGG + Chr1:69372985-69373004 MsG0180003863.01.T01:CDS 50.0%
GGTATGTGCTAGTGTCGTGT+CGG - Chr1:69373508-69373527 None:intergenic 50.0%
GTCAGCATGGCATCAATGAC+TGG - Chr1:69373274-69373293 None:intergenic 50.0%
GTGTGTTTGTGTCAGTGTCG+AGG + Chr1:69373574-69373593 MsG0180003863.01.T01:intron 50.0%
GTTAGTTGTGGGGCACAACT+GGG - Chr1:69372091-69372110 None:intergenic 50.0%
TGAGCCAAATGCAAGAGCAG+GGG + Chr1:69372131-69372150 MsG0180003863.01.T01:intron 50.0%
TTAGTTGTGGGGCACAACTG+GGG - Chr1:69372090-69372109 None:intergenic 50.0%
TTGCAGGAAATCCAGGACAG+AGG + Chr1:69373761-69373780 MsG0180003863.01.T01:intron 50.0%
! TGGTGAAGGTGCAGTTGGTT+CGG + Chr1:69373005-69373024 MsG0180003863.01.T01:intron 50.0%
! TTATCTGGCAGGTTGAGTGG+TGG + Chr1:69372914-69372933 MsG0180003863.01.T01:intron 50.0%
AAATGCAAGAGCAGGGGCGA+AGG + Chr1:69372137-69372156 MsG0180003863.01.T01:intron 55.0%
CAAACCGGATCGGACAGGAT+CGG + Chr1:69372839-69372858 MsG0180003863.01.T01:intron 55.0%
GGAAATCCAGGACAGAGGCA+TGG + Chr1:69373766-69373785 MsG0180003863.01.T01:intron 55.0%
GGTTTACCATGCCTCTGTCC+TGG - Chr1:69373775-69373794 None:intergenic 55.0%
TGCTAGTGTCGTGTCGGAGT+TGG - Chr1:69373502-69373521 None:intergenic 55.0%
TGGGGTCCCAACAGTGTTAG+AGG + Chr1:69372979-69372998 MsG0180003863.01.T01:CDS 55.0%
TTCGCCCCTGCTCTTGCATT+TGG - Chr1:69372138-69372157 None:intergenic 55.0%
! GGACAGAGGCATGGTAAACC+AGG + Chr1:69373775-69373794 MsG0180003863.01.T01:CDS 55.0%
! GGCTATGGTGAAGGTGCAGT+TGG + Chr1:69373000-69373019 MsG0180003863.01.T01:CDS 55.0%
! GGTGAAGGTGCAGTTGGTTC+GGG + Chr1:69373006-69373025 MsG0180003863.01.T01:intron 55.0%
ACAGGATCGGACCGACCGGA+CGG + Chr1:69372852-69372871 MsG0180003863.01.T01:intron 65.0%
CGGTCCGATCCTGTCCGATC+CGG - Chr1:69372846-69372865 None:intergenic 65.0%
TCGGACAGGATCGGACCGAC+CGG + Chr1:69372848-69372867 MsG0180003863.01.T01:intron 65.0%
TGCGGGGGCGATAGCCTCTA+CGG - Chr1:69372067-69372086 None:intergenic 65.0%
TGTGGGGCACAACTGGGGTG+CGG - Chr1:69372085-69372104 None:intergenic 65.0%
CAGAAGAGGGGCAAGGCGCG+AGG - Chr1:69372183-69372202 None:intergenic 70.0%
GTGGGGCACAACTGGGGTGC+GGG - Chr1:69372084-69372103 None:intergenic 70.0%
TGGGGCACAACTGGGGTGCG+GGG - Chr1:69372083-69372102 None:intergenic 70.0%
GGGGCACAACTGGGGTGCGG+GGG - Chr1:69372082-69372101 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
Chr1 gene 69371436 69373924 69371436 ID=MsG0180003863.01;Name=MsG0180003863.01
Chr1 mRNA 69371436 69373924 69371436 ID=MsG0180003863.01.T01;Parent=MsG0180003863.01;Name=MsG0180003863.01.T01;_AED=0.50;_eAED=0.53;_QI=0|0|0|1|1|1|6|0|258
Chr1 exon 69371436 69371540 69371436 ID=MsG0180003863.01.T01:exon:5951;Parent=MsG0180003863.01.T01
Chr1 exon 69371655 69371812 69371655 ID=MsG0180003863.01.T01:exon:5952;Parent=MsG0180003863.01.T01
Chr1 exon 69372499 69372577 69372499 ID=MsG0180003863.01.T01:exon:5953;Parent=MsG0180003863.01.T01
Chr1 exon 69372925 69373021 69372925 ID=MsG0180003863.01.T01:exon:5954;Parent=MsG0180003863.01.T01
Chr1 exon 69373209 69373388 69373209 ID=MsG0180003863.01.T01:exon:5955;Parent=MsG0180003863.01.T01
Chr1 exon 69373767 69373924 69373767 ID=MsG0180003863.01.T01:exon:5956;Parent=MsG0180003863.01.T01
Chr1 CDS 69371436 69371540 69371436 ID=MsG0180003863.01.T01:cds;Parent=MsG0180003863.01.T01
Chr1 CDS 69371655 69371812 69371655 ID=MsG0180003863.01.T01:cds;Parent=MsG0180003863.01.T01
Chr1 CDS 69372499 69372577 69372499 ID=MsG0180003863.01.T01:cds;Parent=MsG0180003863.01.T01
Chr1 CDS 69372925 69373021 69372925 ID=MsG0180003863.01.T01:cds;Parent=MsG0180003863.01.T01
Chr1 CDS 69373209 69373388 69373209 ID=MsG0180003863.01.T01:cds;Parent=MsG0180003863.01.T01
Chr1 CDS 69373767 69373924 69373767 ID=MsG0180003863.01.T01:cds;Parent=MsG0180003863.01.T01
Gene Sequence

>MsG0180003863.01.T01

ATGCTTGATGTATCATGGCACAAGGGACTATATGATTCAAATCTCTTAATTGGTTATAGGTATCCTAAACCTATATGTCTTGGTCAACACTCACTAACTATTCAGCATTTAACTTTTCCTGAAGTTAGAATCCATGGAATTCCCATGAACAATTTTTCCCAATCTGTAAGCCAAGGTTTGAGGTTGTCAAAATTGTCAATTGGATTTGATTTTAATGAGCCTTCAACTTCTAATTGGAGTACTTCAACCGGTGTATACTTTAATGGAGAACCATATGACAATATGATAGTGATTAATCAAAAAACTCAATTTGAAGATGTAAATGATCACAGTTTTACTCACGTTGAGTGGTGGTTCAATTGTAGGATCTGTTGCTCCACATCAAGCTTTTGCAATTGGGGTCCCAACAGTGTTAGAGGCTATGGTGAAGGTGCAGTTGTGGCCTATGATATTGATGAAAATATTGAAACATGTAAGTCATTTCCCATATTATCAATGCTACCAGTCATTGATGCCATGCTGACCATGTTCTTTACTCAATTCTTGCAGAACAAGAAACTGACAGGTGTTTTTTTCCTTGACTGTGGATCTGACTTGAATAGTAGTCATAGGGTTCCTGGAAATCCAGGACAGAGGCATGGTAAACCAGGATCTGGATATGGAATTGGGTGTGGCATTCGGTTCAAAACCAAGCTGGCTCAAATAAAATTTGATTATGCCATCAATGCTTTTCATCAAAGATCTTTATATTTTGGAATTAGCAATCTGGTTCTATAA
Protein sequence

>MsG0180003863.01.T01

MLDVSWHKGLYDSNLLIGYRYPKPICLGQHSLTIQHLTFPEVRIHGIPMNNFSQSVSQGLRLSKLSIGFDFNEPSTSNWSTSTGVYFNGEPYDNMIVINQKTQFEDVNDHSFTHVEWWFNCRICCSTSSFCNWGPNSVRGYGEGAVVAYDIDENIETCKSFPILSMLPVIDAMLTMFFTQFLQNKKLTGVFFLDCGSDLNSSHRVPGNPGQRHGKPGSGYGIGCGIRFKTKLAQIKFDYAINAFHQRSLYFGISNLVL*