Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180000984.01.T01 | XP_013466360.1 | 98.113 | 318 | 6 | 0 | 1 | 318 | 1 | 318 | 0 | 639 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180000984.01.T01 | Q69NG5 | 62.81 | 242 | 87 | 3 | 78 | 316 | 80 | 321 | 5.43E-103 | 307 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180000984.01.T01 | A0A072VFQ2 | 98.113 | 318 | 6 | 0 | 1 | 318 | 1 | 318 | 0.0 | 639 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180000161.01 | MsG0180000984.01 | 0.822551 | 2.229412e-53 | 1.872184e-50 |
| MsG0180000984.01 | MsG0180001719.01 | 0.819672 | 1.026786e-52 | 7.953273e-50 |
| MsG0180000984.01 | MsG0180003863.01 | 0.811899 | 5.556857e-51 | 3.481864e-48 |
| MsG0180000984.01 | MsG0180004098.01 | 0.833623 | 4.794698e-56 | 5.552150e-53 |
| MsG0180000984.01 | MsG0180004710.01 | 0.859305 | 4.535012e-63 | 1.192203e-59 |
| MsG0180000984.01 | MsG0180004828.01 | 0.816584 | 5.128885e-52 | 3.648701e-49 |
| MsG0180000984.01 | MsG0180005325.01 | 0.813709 | 2.231619e-51 | 1.468113e-48 |
| MsG0180000984.01 | MsG0180005621.01 | 0.846913 | 1.610895e-59 | 2.815334e-56 |
| MsG0180000984.01 | MsG0180005655.01 | 0.806503 | 7.971293e-50 | 4.333744e-47 |
| MsG0180000984.01 | MsG0180005678.01 | 0.915049 | 9.332369e-85 | 2.392737e-80 |
| MsG0180000984.01 | MsG0280006666.01 | 0.807915 | 4.002477e-50 | 2.257080e-47 |
| MsG0180000984.01 | MsG0280006909.01 | 0.822141 | 2.776541e-53 | 2.304310e-50 |
| MsG0180000984.01 | MsG0280006924.01 | 0.930359 | 1.836269e-93 | 1.082600e-88 |
| MsG0180000984.01 | MsG0280007408.01 | 0.828279 | 9.818361e-55 | 9.713804e-52 |
| MsG0180000984.01 | MsG0280007695.01 | 0.853038 | 3.111995e-61 | 6.633825e-58 |
| MsG0180000984.01 | MsG0280008751.01 | 0.886063 | 4.736535e-72 | 3.331602e-68 |
| MsG0180000984.01 | MsG0280009980.01 | 0.855603 | 5.647949e-62 | 1.311081e-58 |
| MsG0180000984.01 | MsG0380013341.01 | 0.807702 | 4.441962e-50 | 2.491110e-47 |
| MsG0180000984.01 | MsG0380014542.01 | 0.810286 | 1.243334e-50 | 7.464263e-48 |
| MsG0180000984.01 | MsG0380014544.01 | 0.856128 | 3.964968e-62 | 9.366380e-59 |
| MsG0180000984.01 | MsG0380015340.01 | 0.810513 | 1.110345e-50 | 6.706260e-48 |
| MsG0180000984.01 | MsG0380015656.01 | 0.820747 | 5.826514e-53 | 4.649734e-50 |
| MsG0180000984.01 | MsG0380016875.01 | 0.852863 | 3.490483e-61 | 7.396719e-58 |
| MsG0180000984.01 | MsG0380017696.01 | 0.803871 | 2.834420e-49 | 1.440362e-46 |
| MsG0180000984.01 | MsG0380018028.01 | 0.837087 | 6.393943e-57 | 8.215869e-54 |
| MsG0180000984.01 | MsG0480018228.01 | 0.828711 | 7.723305e-55 | 7.737549e-52 |
| MsG0180000984.01 | MsG0480018875.01 | 0.815891 | 7.326383e-52 | 5.113951e-49 |
| MsG0180000984.01 | MsG0480020057.01 | 0.810020 | 1.418696e-50 | 8.458946e-48 |
| MsG0180000984.01 | MsG0480020937.01 | 0.856001 | 4.320999e-62 | 1.016444e-58 |
| MsG0180000984.01 | MsG0480021100.01 | 0.804354 | 2.248661e-49 | 1.156933e-46 |
| MsG0180000984.01 | MsG0480021486.01 | 0.822540 | 2.242980e-53 | 1.882953e-50 |
| MsG0180000984.01 | MsG0480021740.01 | 0.803879 | 2.824192e-49 | 1.435455e-46 |
| MsG0180000984.01 | MsG0480021773.01 | 0.830561 | 2.739429e-55 | 2.896531e-52 |
| MsG0180000984.01 | MsG0480021902.01 | 0.820909 | 5.345798e-53 | 4.285784e-50 |
| MsG0180000984.01 | MsG0480022378.01 | 0.864470 | 1.188399e-64 | 3.735360e-61 |
| MsG0180000984.01 | MsG0480022977.01 | 0.833481 | 5.203959e-56 | 6.000452e-53 |
| MsG0180000984.01 | MsG0480023225.01 | 0.829949 | 3.865843e-55 | 4.015803e-52 |
| MsG0180000984.01 | MsG0480023913.01 | 0.830860 | 2.315179e-55 | 2.469657e-52 |
| MsG0180000984.01 | MsG0480024019.01 | 0.844752 | 6.224411e-59 | 1.014883e-55 |
| MsG0180000984.01 | MsG0580024276.01 | 0.836358 | 9.809482e-57 | 1.233302e-53 |
| MsG0180000984.01 | MsG0580025970.01 | 0.884166 | 2.418406e-71 | 1.578921e-67 |
| MsG0180000984.01 | MsG0580028098.01 | 0.835668 | 1.467795e-56 | 1.807210e-53 |
| MsG0180000984.01 | MsG0580028884.01 | 0.804819 | 1.798604e-49 | 9.366012e-47 |
| MsG0180000984.01 | MsG0580028890.01 | 0.801301 | 9.603041e-49 | 4.570373e-46 |
| MsG0180000984.01 | MsG0580029739.01 | 0.858533 | 7.719726e-63 | 1.976418e-59 |
| MsG0180000984.01 | MsG0580030141.01 | 0.837432 | 5.216848e-57 | 6.775156e-54 |
| MsG0180000984.01 | MsG0680031356.01 | 0.807124 | 5.891665e-50 | 3.254711e-47 |
| MsG0180000984.01 | MsG0780038647.01 | 0.842936 | 1.906853e-58 | 2.936238e-55 |
| MsG0180000984.01 | MsG0780038736.01 | 0.810579 | 1.074699e-50 | 6.502438e-48 |
| MsG0180000984.01 | MsG0780038952.01 | 0.800894 | 1.163227e-48 | 5.479653e-46 |
| MsG0180000984.01 | MsG0780040459.01 | 0.872310 | 3.508755e-67 | 1.461163e-63 |
| MsG0180000984.01 | MsG0780040554.01 | 0.820581 | 6.360091e-53 | 5.052024e-50 |
| MsG0180000984.01 | MsG0880043920.01 | 0.925659 | 1.358969e-90 | 6.131850e-86 |
| MsG0180000984.01 | MsG0880045090.01 | 0.809684 | 1.675230e-50 | 9.900621e-48 |
| MsG0180000984.01 | MsG0880045879.01 | 0.845385 | 4.197985e-59 | 6.983928e-56 |
| MsG0180000984.01 | MsG0880047080.01 | 0.813424 | 2.577308e-51 | 1.682492e-48 |
| MsG0180000984.01 | MsG0880047228.01 | 0.810392 | 1.179358e-50 | 7.100038e-48 |
| MsG0180000984.01 | MsG0880047414.01 | 0.809939 | 1.476539e-50 | 8.784884e-48 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180000984.01.T01 | MTR_1g028330 | 98.113 | 318 | 6 | 0 | 1 | 318 | 1 | 318 | 0.0 | 639 |
| MsG0180000984.01.T01 | MTR_1g028320 | 63.467 | 323 | 109 | 6 | 1 | 318 | 1 | 319 | 6.80e-139 | 396 |
| MsG0180000984.01.T01 | MTR_3g092110 | 59.736 | 303 | 115 | 4 | 19 | 316 | 9 | 309 | 1.22e-120 | 349 |
| MsG0180000984.01.T01 | MTR_5g045000 | 47.934 | 242 | 123 | 3 | 78 | 316 | 18 | 259 | 3.34e-77 | 237 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180000984.01.T01 | AT5G24400 | 50.980 | 306 | 138 | 4 | 13 | 316 | 30 | 325 | 1.05e-102 | 304 |
| MsG0180000984.01.T01 | AT3G49360 | 51.639 | 244 | 110 | 3 | 78 | 316 | 11 | 251 | 5.51e-83 | 251 |
| MsG0180000984.01.T01 | AT5G24420 | 49.213 | 254 | 122 | 3 | 68 | 316 | 1 | 252 | 6.47e-79 | 241 |
| MsG0180000984.01.T01 | AT1G13700 | 47.541 | 244 | 123 | 3 | 80 | 318 | 20 | 263 | 4.94e-78 | 239 |
| MsG0180000984.01.T01 | AT1G13700 | 47.541 | 244 | 123 | 3 | 80 | 318 | 20 | 263 | 4.94e-78 | 239 |
| MsG0180000984.01.T01 | AT1G13700 | 47.541 | 244 | 123 | 3 | 80 | 318 | 20 | 263 | 4.94e-78 | 239 |
| MsG0180000984.01.T01 | AT5G24410 | 51.020 | 245 | 110 | 4 | 78 | 316 | 17 | 257 | 1.83e-77 | 238 |
Find 84 sgRNAs with CRISPR-Local
Find 139 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGATCTTATGCTATTAGATA+TGG | 0.219132 | 1:-14071661 | MsG0180000984.01.T01:CDS |
| AATAGCATAAGATCAAATTT+TGG | 0.228100 | 1:+14071669 | None:intergenic |
| TGCTTGTGACCAAACGTCTT+AGG | 0.231392 | 1:+14071724 | None:intergenic |
| CATGTAGCTTCTTTGTTTCC+AGG | 0.258573 | 1:-14071627 | MsG0180000984.01.T01:CDS |
| GGAGAGGTCAGCAACATATT+TGG | 0.269169 | 1:+14072775 | None:intergenic |
| GGAGCATCTTGCTGTGTCTT+TGG | 0.286314 | 1:-14072798 | MsG0180000984.01.T01:CDS |
| CCACCAACATGAATTCTCTT+AGG | 0.287083 | 1:+14072872 | None:intergenic |
| AATATTGCTATGGTTGTTAC+TGG | 0.299118 | 1:-14071495 | MsG0180000984.01.T01:CDS |
| TTGCTATCAACGTGAGTCTT+TGG | 0.304718 | 1:+14072081 | None:intergenic |
| ATCCTCTCCGGCGGCGGTTT+AGG | 0.316898 | 1:+14071552 | None:intergenic |
| CTGGACCAGTCAAGTATCTA+AGG | 0.349390 | 1:-14072706 | MsG0180000984.01.T01:intron |
| TGGACAAGGGTGCTGCTTCA+AGG | 0.364070 | 1:-14071368 | MsG0180000984.01.T01:CDS |
| GAAGATACATTGTGTCTTAG+AGG | 0.365315 | 1:+14072902 | None:intergenic |
| GTCATTGGTGTCACCTCAAT+TGG | 0.367130 | 1:-14072945 | MsG0180000984.01.T01:CDS |
| ATAGGAAGCATATTATCATT+AGG | 0.382365 | 1:+14071429 | None:intergenic |
| TTTATTGAGCAAAATATGTA+TGG | 0.384635 | 1:-14070930 | MsG0180000984.01.T01:three_prime_UTR |
| AACCATTTGATATCTCCTTC+AGG | 0.389182 | 1:+14071393 | None:intergenic |
| AGGAGATATCAAATGGTTCT+TGG | 0.390569 | 1:-14071388 | MsG0180000984.01.T01:CDS |
| CTATGCTTCTTGTATTGTCT+TGG | 0.394388 | 1:+14071024 | None:intergenic |
| ATATCAAAATCATCCCTAAC+TGG | 0.394516 | 1:-14071696 | MsG0180000984.01.T01:CDS |
| GATCTTATGCTATTAGATAT+GGG | 0.400581 | 1:-14071660 | MsG0180000984.01.T01:CDS |
| GTCAAAATAAAGCAATATGA+TGG | 0.418851 | 1:-14071111 | MsG0180000984.01.T01:three_prime_UTR |
| GCTTGTGACCAAACGTCTTA+GGG | 0.422653 | 1:+14071725 | None:intergenic |
| TGAGACAACCCTAAGACGTT+TGG | 0.427530 | 1:-14071733 | MsG0180000984.01.T01:CDS |
| TTGTGTTTGTGACTTATGTT+TGG | 0.433948 | 1:+14072979 | None:intergenic |
| GCTATGGTTGTTACTGGTGC+TGG | 0.441325 | 1:-14071489 | MsG0180000984.01.T01:CDS |
| AATTCACAATTTCAGGAAGC+TGG | 0.444188 | 1:-14072175 | MsG0180000984.01.T01:intron |
| GTTTACTCTGCACTTGAGAA+AGG | 0.447789 | 1:-14071453 | MsG0180000984.01.T01:CDS |
| CAATCGATAGTGTCACAATA+TGG | 0.447946 | 1:+14072144 | None:intergenic |
| CATTGTTTCTAACTAATCAA+TGG | 0.455253 | 1:-14073053 | MsG0180000984.01.T01:exon |
| TGCTACTTCAAATATTGCTA+TGG | 0.455962 | 1:-14071505 | MsG0180000984.01.T01:CDS |
| TTGCTCGGGTCGAAATTACT+TGG | 0.460855 | 1:+14071326 | None:intergenic |
| ACAATCCTCAACCATGTCAT+TGG | 0.477837 | 1:-14072960 | MsG0180000984.01.T01:CDS |
| TTGGAATGCAACATGCTTTG+TGG | 0.479757 | 1:+14072998 | None:intergenic |
| TGCTGCTCCATCAGCTGGTA+GGG | 0.490513 | 1:+14071764 | None:intergenic |
| ATGTAGCTTCTTTGTTTCCA+GGG | 0.494234 | 1:-14071626 | MsG0180000984.01.T01:CDS |
| AAAGAAGCTACATGTCCATC+AGG | 0.494933 | 1:+14071636 | None:intergenic |
| AAAGTAATCCTCTCCGGCGG+CGG | 0.497561 | 1:+14071546 | None:intergenic |
| TCATTCACTGCAGGGTACCC+TGG | 0.499722 | 1:+14071609 | None:intergenic |
| CCTAAGAGAATTCATGTTGG+TGG | 0.500842 | 1:-14072872 | MsG0180000984.01.T01:CDS |
| TAATATGCTTCCTATTCAAA+AGG | 0.503362 | 1:-14071421 | MsG0180000984.01.T01:CDS |
| CTTAGATACTTGACTGGTCC+AGG | 0.507778 | 1:+14072707 | None:intergenic |
| ACATCTGCTGCTCCATCAGC+TGG | 0.514811 | 1:+14071759 | None:intergenic |
| TCAATTGTGTTCACATTGAG+TGG | 0.517319 | 1:+14071792 | None:intergenic |
| AAGCAATATGATGGGACTGC+TGG | 0.518393 | 1:-14071102 | MsG0180000984.01.T01:three_prime_UTR |
| GAGAATTCATGTTGGTGGCT+TGG | 0.523036 | 1:-14072867 | MsG0180000984.01.T01:CDS |
| CTGCTGCTCCATCAGCTGGT+AGG | 0.523186 | 1:+14071763 | None:intergenic |
| TCATTGGTGTCACCTCAATT+GGG | 0.523821 | 1:-14072944 | MsG0180000984.01.T01:CDS |
| CGTTAGAATGAATGTTGCTC+GGG | 0.526852 | 1:+14071312 | None:intergenic |
| TTTGAAGTAGCATTAATCAC+TGG | 0.530984 | 1:+14071516 | None:intergenic |
| CTATTAGATATGGGACCTGA+TGG | 0.532418 | 1:-14071651 | MsG0180000984.01.T01:CDS |
| CAATTGTGTTCACATTGAGT+GGG | 0.534779 | 1:+14071793 | None:intergenic |
| ATCCTGAAGGAGATATCAAA+TGG | 0.537202 | 1:-14071395 | MsG0180000984.01.T01:CDS |
| TATCAAATGGTTCTTGGACA+AGG | 0.539582 | 1:-14071382 | MsG0180000984.01.T01:CDS |
| TGCTTTGTGGAGTGCATGAA+AGG | 0.542015 | 1:+14073011 | None:intergenic |
| CAATACCTTAGATACTTGAC+TGG | 0.543528 | 1:+14072701 | None:intergenic |
| GATGATTCCCTACCAGCTGA+TGG | 0.545667 | 1:-14071771 | MsG0180000984.01.T01:CDS |
| TCAAAATAAAGCAATATGAT+GGG | 0.552866 | 1:-14071110 | MsG0180000984.01.T01:three_prime_UTR |
| ACGTTAGAATGAATGTTGCT+CGG | 0.555026 | 1:+14071311 | None:intergenic |
| TAACGATAGCTTCATTTCCA+AGG | 0.560127 | 1:-14072046 | MsG0180000984.01.T01:intron |
| TCATGTTGGTGGCTTGGTGA+AGG | 0.564204 | 1:-14072861 | MsG0180000984.01.T01:CDS |
| TTTCAGTCTCATTCACTGCA+GGG | 0.571958 | 1:+14071601 | None:intergenic |
| AATGTAAAAGTAATCCTCTC+CGG | 0.574221 | 1:+14071540 | None:intergenic |
| ATCAAATGGTTCTTGGACAA+GGG | 0.578434 | 1:-14071381 | MsG0180000984.01.T01:CDS |
| TGTGTCTTAGAGGGCTATAG+AGG | 0.581993 | 1:+14072912 | None:intergenic |
| ATTCAAAAGGTGAATCCTGA+AGG | 0.582947 | 1:-14071408 | MsG0180000984.01.T01:CDS |
| CACCTAAACCGCCGCCGGAG+AGG | 0.588803 | 1:-14071554 | MsG0180000984.01.T01:CDS |
| AAGATACATTGTGTCTTAGA+GGG | 0.590300 | 1:+14072903 | None:intergenic |
| TGACACCAATGACATGGTTG+AGG | 0.595503 | 1:+14072955 | None:intergenic |
| CATATTGTGACACTATCGAT+TGG | 0.601292 | 1:-14072143 | MsG0180000984.01.T01:CDS |
| ACACTATCGATTGGTCTAAG+TGG | 0.610653 | 1:-14072134 | MsG0180000984.01.T01:CDS |
| AATTGTGTTCACATTGAGTG+GGG | 0.620392 | 1:+14071794 | None:intergenic |
| GCTTTGTGGAGTGCATGAAA+GGG | 0.623902 | 1:+14073012 | None:intergenic |
| AAACCTAAGAGAATTCATGT+TGG | 0.624267 | 1:-14072875 | MsG0180000984.01.T01:CDS |
| GAATGCACCTAAACCGCCGC+CGG | 0.626616 | 1:-14071559 | MsG0180000984.01.T01:CDS |
| GGATGTGCATGTGCTAAGCA+AGG | 0.627699 | 1:-14072819 | MsG0180000984.01.T01:CDS |
| ATTGTGTTCACATTGAGTGG+GGG | 0.652455 | 1:+14071795 | None:intergenic |
| TCGATAGTGTCACAATATGG+TGG | 0.659952 | 1:+14072147 | None:intergenic |
| TAAGTCAAACACTATATATG+CGG | 0.660884 | 1:-14071247 | MsG0180000984.01.T01:three_prime_UTR |
| GTAAAAGTAATCCTCTCCGG+CGG | 0.709915 | 1:+14071543 | None:intergenic |
| GGCATCAATGAATAACAACA+AGG | 0.718422 | 1:-14072840 | MsG0180000984.01.T01:CDS |
| TTGAGGTGACACCAATGACA+TGG | 0.719081 | 1:+14072949 | None:intergenic |
| TTATCGAGTGAAATTCACGC+AGG | 0.730107 | 1:+14071203 | None:intergenic |
| TGGTCCAGGAGACAAAACGA+CGG | 0.782788 | 1:+14072721 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTCTTAAATGAAAAATAAAA+TGG | - | Chr1:14071696-14071715 | MsG0180000984.01.T01:CDS | 10.0% |
| !! | ATGAAGATAAGTTAATTATT+TGG | - | Chr1:14071752-14071771 | MsG0180000984.01.T01:CDS | 15.0% |
| !! | TGAAGATAAGTTAATTATTT+GGG | - | Chr1:14071753-14071772 | MsG0180000984.01.T01:CDS | 15.0% |
| !! | TTAAATGAAAAATAAAATGG+TGG | - | Chr1:14071699-14071718 | MsG0180000984.01.T01:CDS | 15.0% |
| !!! | TTTTTCTTTTTGAATGTAAA+TGG | - | Chr1:14072986-14073005 | MsG0180000984.01.T01:CDS | 15.0% |
| !! | ATCGTCAAATAAATAAATGA+TGG | + | Chr1:14072066-14072085 | None:intergenic | 20.0% |
| !! | CTAAGTCATATTATTGTATT+TGG | - | Chr1:14072143-14072162 | MsG0180000984.01.T01:CDS | 20.0% |
| !! | CTATTTAATGCATATACTAT+TGG | - | Chr1:14073088-14073107 | MsG0180000984.01.T01:five_prime_UTR | 20.0% |
| !! | TCAAAATAAAGCAATATGAT+GGG | - | Chr1:14072863-14072882 | MsG0180000984.01.T01:CDS | 20.0% |
| !! | TTTATTGAGCAAAATATGTA+TGG | - | Chr1:14073043-14073062 | MsG0180000984.01.T01:exon | 20.0% |
| !!! | AATAGCATAAGATCAAATTT+TGG | + | Chr1:14072307-14072326 | None:intergenic | 20.0% |
| !!! | ATAGCATAAGATCAAATTTT+GGG | + | Chr1:14072306-14072325 | None:intergenic | 20.0% |
| ! | ATTCTTGAATTCACAATTTC+AGG | - | Chr1:14071791-14071810 | MsG0180000984.01.T01:CDS | 25.0% |
| ! | GAAAAATACATTAGAGAGAA+GGG | - | Chr1:14071221-14071240 | MsG0180000984.01.T01:three_prime_UTR | 25.0% |
| ! | GATCTTATGCTATTAGATAT+GGG | - | Chr1:14072313-14072332 | MsG0180000984.01.T01:intron | 25.0% |
| ! | GTCAAAATAAAGCAATATGA+TGG | - | Chr1:14072862-14072881 | MsG0180000984.01.T01:CDS | 25.0% |
| ! | GTCATATTATTGTATTTGGA+AGG | - | Chr1:14072147-14072166 | MsG0180000984.01.T01:CDS | 25.0% |
| ! | TAAGTCAAACACTATATATG+CGG | - | Chr1:14072726-14072745 | MsG0180000984.01.T01:CDS | 25.0% |
| ! | TAATATGCTTCCTATTCAAA+AGG | - | Chr1:14072552-14072571 | MsG0180000984.01.T01:intron | 25.0% |
| ! | TGATCTTATGCTATTAGATA+TGG | - | Chr1:14072312-14072331 | MsG0180000984.01.T01:intron | 25.0% |
| !! | AGCATCTTACTCTTTAAAAA+TGG | - | Chr1:14071310-14071329 | MsG0180000984.01.T01:three_prime_UTR | 25.0% |
| !! | ATAGGAAGCATATTATCATT+AGG | + | Chr1:14072547-14072566 | None:intergenic | 25.0% |
| !! | CTTCTCTCTAATGTATTTTT+CGG | + | Chr1:14071222-14071241 | None:intergenic | 25.0% |
| !! | TACTCTTTAAAAATGGATAG+AGG | - | Chr1:14071317-14071336 | MsG0180000984.01.T01:three_prime_UTR | 25.0% |
| !!! | CATTGTTTCTAACTAATCAA+TGG | - | Chr1:14070920-14070939 | MsG0180000984.01.T01:three_prime_UTR | 25.0% |
| !!! | TTGCTTTATTTTGACTTTAG+CGG | + | Chr1:14072857-14072876 | None:intergenic | 25.0% |
| !!! | TTTTTAAAGAGTAAGATGCT+AGG | + | Chr1:14071310-14071329 | None:intergenic | 25.0% |
| AAAAAACACACACACATGTT+AGG | + | Chr1:14073026-14073045 | None:intergenic | 30.0% | |
| AAACCTAAGAGAATTCATGT+TGG | - | Chr1:14071098-14071117 | MsG0180000984.01.T01:three_prime_UTR | 30.0% | |
| AAGATACATTGTGTCTTAGA+GGG | + | Chr1:14071073-14071092 | None:intergenic | 30.0% | |
| AATATTGCTATGGTTGTTAC+TGG | - | Chr1:14072478-14072497 | MsG0180000984.01.T01:intron | 30.0% | |
| AATGTAAAAGTAATCCTCTC+CGG | + | Chr1:14072436-14072455 | None:intergenic | 30.0% | |
| AGTCAAAAATATACGTCTGA+AGG | + | Chr1:14071558-14071577 | None:intergenic | 30.0% | |
| AGTGAATGAGACTGAAAAAT+GGG | - | Chr1:14072378-14072397 | MsG0180000984.01.T01:intron | 30.0% | |
| ATATCAAAATCATCCCTAAC+TGG | - | Chr1:14072277-14072296 | MsG0180000984.01.T01:intron | 30.0% | |
| ATTTATTGCCAATTTCGCTA+GGG | + | Chr1:14071663-14071682 | None:intergenic | 30.0% | |
| CGAAAAATACATTAGAGAGA+AGG | - | Chr1:14071220-14071239 | MsG0180000984.01.T01:three_prime_UTR | 30.0% | |
| TATTTATTGCCAATTTCGCT+AGG | + | Chr1:14071664-14071683 | None:intergenic | 30.0% | |
| TGATAGAGTTAAAATCTCCT+TGG | + | Chr1:14071393-14071412 | None:intergenic | 30.0% | |
| TTGTGTTTGTGACTTATGTT+TGG | + | Chr1:14070997-14071016 | None:intergenic | 30.0% | |
| ! | AATAAATGATGGTTTGTGAC+TGG | + | Chr1:14072055-14072074 | None:intergenic | 30.0% |
| ! | TCATATTTTATCGTGTACCT+TGG | + | Chr1:14071947-14071966 | None:intergenic | 30.0% |
| ! | TGCTACTTCAAATATTGCTA+TGG | - | Chr1:14072468-14072487 | MsG0180000984.01.T01:intron | 30.0% |
| ! | TTTGAAGTAGCATTAATCAC+TGG | + | Chr1:14072460-14072479 | None:intergenic | 30.0% |
| !!! | AGTCGAGATTTTTAGCTATT+TGG | - | Chr1:14071637-14071656 | MsG0180000984.01.T01:CDS | 30.0% |
| !!! | CAGACGTATATTTTTGACTT+CGG | - | Chr1:14071559-14071578 | MsG0180000984.01.T01:CDS | 30.0% |
| AACAGTAAGCACCTAGTTAA+TGG | - | Chr1:14071510-14071529 | MsG0180000984.01.T01:CDS | 35.0% | |
| AACCATTTGATATCTCCTTC+AGG | + | Chr1:14072583-14072602 | None:intergenic | 35.0% | |
| AATTCACAATTTCAGGAAGC+TGG | - | Chr1:14071798-14071817 | MsG0180000984.01.T01:CDS | 35.0% | |
| AATTGTGTTCACATTGAGTG+GGG | + | Chr1:14072182-14072201 | None:intergenic | 35.0% | |
| ACGTTAGAATGAATGTTGCT+CGG | + | Chr1:14072665-14072684 | None:intergenic | 35.0% | |
| AGGAGATATCAAATGGTTCT+TGG | - | Chr1:14072585-14072604 | MsG0180000984.01.T01:intron | 35.0% | |
| AGTTAAAATCTCCTTGGAGA+TGG | + | Chr1:14071387-14071406 | None:intergenic | 35.0% | |
| ATCAAATGGTTCTTGGACAA+GGG | - | Chr1:14072592-14072611 | MsG0180000984.01.T01:intron | 35.0% | |
| ATCCTGAAGGAGATATCAAA+TGG | - | Chr1:14072578-14072597 | MsG0180000984.01.T01:intron | 35.0% | |
| ATTCAAAAGGTGAATCCTGA+AGG | - | Chr1:14072565-14072584 | MsG0180000984.01.T01:intron | 35.0% | |
| CAATACCTTAGATACTTGAC+TGG | + | Chr1:14071275-14071294 | None:intergenic | 35.0% | |
| CAATCGATAGTGTCACAATA+TGG | + | Chr1:14071832-14071851 | None:intergenic | 35.0% | |
| CAATTGTGTTCACATTGAGT+GGG | + | Chr1:14072183-14072202 | None:intergenic | 35.0% | |
| CAGTGAATGAGACTGAAAAA+TGG | - | Chr1:14072377-14072396 | MsG0180000984.01.T01:intron | 35.0% | |
| CATATTGTGACACTATCGAT+TGG | - | Chr1:14071830-14071849 | MsG0180000984.01.T01:intron | 35.0% | |
| CTATGCTTCTTGTATTGTCT+TGG | + | Chr1:14072952-14072971 | None:intergenic | 35.0% | |
| GAAGATACATTGTGTCTTAG+AGG | + | Chr1:14071074-14071093 | None:intergenic | 35.0% | |
| GGCATCAATGAATAACAACA+AGG | - | Chr1:14071133-14071152 | MsG0180000984.01.T01:three_prime_UTR | 35.0% | |
| TAACGATAGCTTCATTTCCA+AGG | - | Chr1:14071927-14071946 | MsG0180000984.01.T01:intron | 35.0% | |
| TATCAAATGGTTCTTGGACA+AGG | - | Chr1:14072591-14072610 | MsG0180000984.01.T01:intron | 35.0% | |
| TCAATTGTGTTCACATTGAG+TGG | + | Chr1:14072184-14072203 | None:intergenic | 35.0% | |
| ! | AGTTCAAGAGTACGATGATA+GGG | + | Chr1:14071464-14071483 | None:intergenic | 35.0% |
| ! | ATGTAGCTTCTTTGTTTCCA+GGG | - | Chr1:14072347-14072366 | MsG0180000984.01.T01:intron | 35.0% |
| ! | GTCTAAGTGGCACATATTTT+TGG | - | Chr1:14071852-14071871 | MsG0180000984.01.T01:intron | 35.0% |
| ! | TACTGTTTCTCATGATCACA+TGG | + | Chr1:14071497-14071516 | None:intergenic | 35.0% |
| ! | TCAGGATTCACCTTTTGAAT+AGG | + | Chr1:14072565-14072584 | None:intergenic | 35.0% |
| !! | AAATTTTGGGAAGCCAGTTA+GGG | + | Chr1:14072293-14072312 | None:intergenic | 35.0% |
| !! | CTCTAATGTATTTTTCGGAG+AGG | + | Chr1:14071217-14071236 | None:intergenic | 35.0% |
| !! | TATGCGGTCCATTTTTAAGA+TGG | - | Chr1:14072742-14072761 | MsG0180000984.01.T01:CDS | 35.0% |
| !!! | TAAGTGGCACATATTTTTGG+TGG | - | Chr1:14071855-14071874 | MsG0180000984.01.T01:intron | 35.0% |
| AAAGAAGCTACATGTCCATC+AGG | + | Chr1:14072340-14072359 | None:intergenic | 40.0% | |
| ACAATCCTCAACCATGTCAT+TGG | - | Chr1:14071013-14071032 | MsG0180000984.01.T01:three_prime_UTR | 40.0% | |
| ACGATTGAGCTCCATTAACT+AGG | + | Chr1:14071524-14071543 | None:intergenic | 40.0% | |
| AGGTCCCACCATCTTAAAAA+TGG | + | Chr1:14072753-14072772 | None:intergenic | 40.0% | |
| AGTTAATGGAGCTCAATCGT+TGG | - | Chr1:14071524-14071543 | MsG0180000984.01.T01:CDS | 40.0% | |
| ATTGTGTTCACATTGAGTGG+GGG | + | Chr1:14072181-14072200 | None:intergenic | 40.0% | |
| CCACCAACATGAATTCTCTT+AGG | + | Chr1:14071104-14071123 | None:intergenic | 40.0% | |
| CCTAAGAGAATTCATGTTGG+TGG | - | Chr1:14071101-14071120 | MsG0180000984.01.T01:three_prime_UTR | 40.0% | |
| CGTTAGAATGAATGTTGCTC+GGG | + | Chr1:14072664-14072683 | None:intergenic | 40.0% | |
| CTATTAGATATGGGACCTGA+TGG | - | Chr1:14072322-14072341 | MsG0180000984.01.T01:intron | 40.0% | |
| GTTTACTCTGCACTTGAGAA+AGG | - | Chr1:14072520-14072539 | MsG0180000984.01.T01:intron | 40.0% | |
| TCGATAGTGTCACAATATGG+TGG | + | Chr1:14071829-14071848 | None:intergenic | 40.0% | |
| TTATCGAGTGAAATTCACGC+AGG | + | Chr1:14072773-14072792 | None:intergenic | 40.0% | |
| TTGCTATCAACGTGAGTCTT+TGG | + | Chr1:14071895-14071914 | None:intergenic | 40.0% | |
| TTGGAATGCAACATGCTTTG+TGG | + | Chr1:14070978-14070997 | None:intergenic | 40.0% | |
| TTTCAGTCTCATTCACTGCA+GGG | + | Chr1:14072375-14072394 | None:intergenic | 40.0% | |
| ! | CATGTAGCTTCTTTGTTTCC+AGG | - | Chr1:14072346-14072365 | MsG0180000984.01.T01:intron | 40.0% |
| ! | GAGTTCAAGAGTACGATGAT+AGG | + | Chr1:14071465-14071484 | None:intergenic | 40.0% |
| ! | TTTTCAGTCTCATTCACTGC+AGG | + | Chr1:14072376-14072395 | None:intergenic | 40.0% |
| !! | ACACTATCGATTGGTCTAAG+TGG | - | Chr1:14071839-14071858 | MsG0180000984.01.T01:intron | 40.0% |
| !! | AGGTGTTTTTGTCCCAATTG+AGG | + | Chr1:14071044-14071063 | None:intergenic | 40.0% |
| !! | CAAATTTTGGGAAGCCAGTT+AGG | + | Chr1:14072294-14072313 | None:intergenic | 40.0% |
| !! | TCATTGGTGTCACCTCAATT+GGG | - | Chr1:14071029-14071048 | MsG0180000984.01.T01:three_prime_UTR | 40.0% |
| !!! | CGGTCCATTTTTAAGATGGT+GGG | - | Chr1:14072746-14072765 | MsG0180000984.01.T01:CDS | 40.0% |
| AATGGAGCTCAATCGTTGGA+TGG | - | Chr1:14071528-14071547 | MsG0180000984.01.T01:CDS | 45.0% | |
| CAAGTTAACGACCATCTCCA+AGG | - | Chr1:14071373-14071392 | MsG0180000984.01.T01:CDS | 45.0% | |
| CTATTTGGCCCTAGCGAAAT+TGG | - | Chr1:14071652-14071671 | MsG0180000984.01.T01:CDS | 45.0% | |
| CTGGACCAGTCAAGTATCTA+AGG | - | Chr1:14071267-14071286 | MsG0180000984.01.T01:three_prime_UTR | 45.0% | |
| GAGTACGATGATAGGGTCTT+AGG | + | Chr1:14071457-14071476 | None:intergenic | 45.0% | |
| GCTTGTGACCAAACGTCTTA+GGG | + | Chr1:14072251-14072270 | None:intergenic | 45.0% | |
| GCTTTGTGGAGTGCATGAAA+GGG | + | Chr1:14070964-14070983 | None:intergenic | 45.0% | |
| GGAGAGGTCAGCAACATATT+TGG | + | Chr1:14071201-14071220 | None:intergenic | 45.0% | |
| GTAAAAGTAATCCTCTCCGG+CGG | + | Chr1:14072433-14072452 | None:intergenic | 45.0% | |
| TGACACCAATGACATGGTTG+AGG | + | Chr1:14071021-14071040 | None:intergenic | 45.0% | |
| TGAGACAACCCTAAGACGTT+TGG | - | Chr1:14072240-14072259 | MsG0180000984.01.T01:intron | 45.0% | |
| TGCTTGTGACCAAACGTCTT+AGG | + | Chr1:14072252-14072271 | None:intergenic | 45.0% | |
| TGCTTTGTGGAGTGCATGAA+AGG | + | Chr1:14070965-14070984 | None:intergenic | 45.0% | |
| TGTGTCTTAGAGGGCTATAG+AGG | + | Chr1:14071064-14071083 | None:intergenic | 45.0% | |
| TTAGGTGTTAGCTCAGTGCT+CGG | + | Chr1:14071439-14071458 | None:intergenic | 45.0% | |
| TTCACATTGAGTGGGGGAAT+TGG | + | Chr1:14072175-14072194 | None:intergenic | 45.0% | |
| TTGAGGTGACACCAATGACA+TGG | + | Chr1:14071027-14071046 | None:intergenic | 45.0% | |
| TTGCTCGGGTCGAAATTACT+TGG | + | Chr1:14072650-14072669 | None:intergenic | 45.0% | |
| ! | AAGCAATATGATGGGACTGC+TGG | - | Chr1:14072871-14072890 | MsG0180000984.01.T01:CDS | 45.0% |
| ! | CTTAGATACTTGACTGGTCC+AGG | + | Chr1:14071269-14071288 | None:intergenic | 45.0% |
| !! | GAGAATTCATGTTGGTGGCT+TGG | - | Chr1:14071106-14071125 | MsG0180000984.01.T01:three_prime_UTR | 45.0% |
| !! | GTCATTGGTGTCACCTCAAT+TGG | - | Chr1:14071028-14071047 | MsG0180000984.01.T01:three_prime_UTR | 45.0% |
| !!! | GCGGTCCATTTTTAAGATGG+TGG | - | Chr1:14072745-14072764 | MsG0180000984.01.T01:CDS | 45.0% |
| GATGATTCCCTACCAGCTGA+TGG | - | Chr1:14072202-14072221 | MsG0180000984.01.T01:intron | 50.0% | |
| GCTATGGTTGTTACTGGTGC+TGG | - | Chr1:14072484-14072503 | MsG0180000984.01.T01:intron | 50.0% | |
| GGATGTGCATGTGCTAAGCA+AGG | - | Chr1:14071154-14071173 | MsG0180000984.01.T01:three_prime_UTR | 50.0% | |
| TGGTCCAGGAGACAAAACGA+CGG | + | Chr1:14071255-14071274 | None:intergenic | 50.0% | |
| ! | GGAGCATCTTGCTGTGTCTT+TGG | - | Chr1:14071175-14071194 | MsG0180000984.01.T01:three_prime_UTR | 50.0% |
| !! | TCATGTTGGTGGCTTGGTGA+AGG | - | Chr1:14071112-14071131 | MsG0180000984.01.T01:three_prime_UTR | 50.0% |
| !! | TTCACCGTCGTTTTGTCTCC+TGG | - | Chr1:14071248-14071267 | MsG0180000984.01.T01:three_prime_UTR | 50.0% |
| AAAGTAATCCTCTCCGGCGG+CGG | + | Chr1:14072430-14072449 | None:intergenic | 55.0% | |
| ACATCTGCTGCTCCATCAGC+TGG | + | Chr1:14072217-14072236 | None:intergenic | 55.0% | |
| TGCTGCTCCATCAGCTGGTA+GGG | + | Chr1:14072212-14072231 | None:intergenic | 55.0% | |
| ! | TCATTCACTGCAGGGTACCC+TGG | + | Chr1:14072367-14072386 | None:intergenic | 55.0% |
| !! | TGGACAAGGGTGCTGCTTCA+AGG | - | Chr1:14072605-14072624 | MsG0180000984.01.T01:intron | 55.0% |
| CTGCTGCTCCATCAGCTGGT+AGG | + | Chr1:14072213-14072232 | None:intergenic | 60.0% | |
| GAATGCACCTAAACCGCCGC+CGG | - | Chr1:14072414-14072433 | MsG0180000984.01.T01:intron | 60.0% | |
| ATCCTCTCCGGCGGCGGTTT+AGG | + | Chr1:14072424-14072443 | None:intergenic | 65.0% | |
| CACCTAAACCGCCGCCGGAG+AGG | - | Chr1:14072419-14072438 | MsG0180000984.01.T01:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr1 | gene | 14070886 | 14073109 | 14070886 | ID=MsG0180000984.01;Name=MsG0180000984.01 |
| Chr1 | mRNA | 14070886 | 14073109 | 14070886 | ID=MsG0180000984.01.T01;Parent=MsG0180000984.01;Name=MsG0180000984.01.T01;_AED=0.34;_eAED=0.34;_QI=53|1|1|1|1|1|3|470|318 |
| Chr1 | exon | 14070886 | 14071826 | 14070886 | ID=MsG0180000984.01.T01:exon:9659;Parent=MsG0180000984.01.T01 |
| Chr1 | exon | 14072047 | 14072182 | 14072047 | ID=MsG0180000984.01.T01:exon:9658;Parent=MsG0180000984.01.T01 |
| Chr1 | exon | 14072707 | 14073109 | 14072707 | ID=MsG0180000984.01.T01:exon:9657;Parent=MsG0180000984.01.T01 |
| Chr1 | five_prime_UTR | 14073057 | 14073109 | 14073057 | ID=MsG0180000984.01.T01:five_prime_utr;Parent=MsG0180000984.01.T01 |
| Chr1 | CDS | 14072707 | 14073056 | 14072707 | ID=MsG0180000984.01.T01:cds;Parent=MsG0180000984.01.T01 |
| Chr1 | CDS | 14072047 | 14072182 | 14072047 | ID=MsG0180000984.01.T01:cds;Parent=MsG0180000984.01.T01 |
| Chr1 | CDS | 14071356 | 14071826 | 14071356 | ID=MsG0180000984.01.T01:cds;Parent=MsG0180000984.01.T01 |
| Chr1 | three_prime_UTR | 14070886 | 14071355 | 14070886 | ID=MsG0180000984.01.T01:three_prime_utr;Parent=MsG0180000984.01.T01 |
| Gene Sequence |
| Protein sequence |
