Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180004168.01.T01 | XP_013468760.1 | 93.023 | 516 | 3 | 1 | 1 | 483 | 1 | 516 | 0 | 985 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180004168.01.T01 | O48780 | 70.707 | 495 | 112 | 1 | 18 | 479 | 15 | 509 | 0 | 739 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180004168.01.T01 | A0A072VLT9 | 93.023 | 516 | 3 | 1 | 1 | 483 | 1 | 516 | 0.0 | 985 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180004168.01 | MsG0180004283.01 | 0.907553 | 4.473929e-81 | 7.975403e-77 |
PPI
| Gene1 | Gene2 | Type |
|---|---|---|
| MsG0280009108.01 | MsG0180004168.01 | PPI |
| MsG0280009139.01 | MsG0180004168.01 | PPI |
| MsG0780041800.01 | MsG0180004168.01 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180004168.01.T01 | MTR_1g076430 | 93.023 | 516 | 3 | 1 | 1 | 483 | 1 | 516 | 0.0 | 985 |
| MsG0180004168.01.T01 | MTR_1g041085 | 77.778 | 522 | 71 | 4 | 1 | 481 | 4 | 521 | 0.0 | 837 |
| MsG0180004168.01.T01 | MTR_2g054940 | 69.960 | 506 | 119 | 1 | 7 | 479 | 6 | 511 | 0.0 | 743 |
| MsG0180004168.01.T01 | MTR_7g081695 | 68.008 | 497 | 114 | 2 | 7 | 470 | 6 | 490 | 0.0 | 696 |
| MsG0180004168.01.T01 | MTR_4g113280 | 67.273 | 495 | 118 | 2 | 18 | 479 | 6 | 489 | 0.0 | 691 |
| MsG0180004168.01.T01 | MTR_4g070270 | 60.941 | 489 | 157 | 2 | 18 | 473 | 15 | 502 | 0.0 | 624 |
| MsG0180004168.01.T01 | MTR_7g118170 | 59.200 | 500 | 162 | 6 | 17 | 474 | 30 | 529 | 0.0 | 590 |
| MsG0180004168.01.T01 | MTR_1g110930 | 55.984 | 493 | 183 | 2 | 20 | 479 | 5 | 496 | 0.0 | 561 |
| MsG0180004168.01.T01 | MTR_3g105550 | 53.033 | 511 | 194 | 6 | 8 | 473 | 27 | 536 | 0.0 | 560 |
| MsG0180004168.01.T01 | MTR_5g056510 | 53.550 | 493 | 195 | 2 | 20 | 479 | 5 | 496 | 0.0 | 539 |
| MsG0180004168.01.T01 | MTR_6g074880 | 57.968 | 433 | 148 | 2 | 77 | 475 | 38 | 470 | 0.0 | 516 |
| MsG0180004168.01.T01 | MTR_4g054630 | 58.005 | 431 | 147 | 2 | 77 | 473 | 36 | 466 | 1.30e-179 | 511 |
| MsG0180004168.01.T01 | MTR_4g054415 | 58.962 | 424 | 139 | 3 | 84 | 473 | 3 | 425 | 1.13e-178 | 508 |
| MsG0180004168.01.T01 | MTR_6g032965 | 57.143 | 385 | 132 | 1 | 123 | 474 | 1 | 385 | 7.93e-158 | 453 |
| MsG0180004168.01.T01 | MTR_2g013740 | 47.368 | 494 | 216 | 6 | 6 | 465 | 20 | 503 | 3.21e-151 | 441 |
| MsG0180004168.01.T01 | MTR_7g118160 | 50.123 | 405 | 125 | 5 | 103 | 472 | 56 | 418 | 1.67e-137 | 403 |
| MsG0180004168.01.T01 | MTR_2g007020 | 45.610 | 410 | 187 | 4 | 99 | 474 | 45 | 452 | 6.85e-128 | 379 |
| MsG0180004168.01.T01 | MTR_2g436480 | 44.836 | 426 | 191 | 6 | 87 | 473 | 31 | 451 | 1.90e-127 | 378 |
| MsG0180004168.01.T01 | MTR_1g102290 | 38.971 | 408 | 215 | 2 | 98 | 471 | 77 | 484 | 4.76e-105 | 322 |
| MsG0180004168.01.T01 | MTR_3g072980 | 38.889 | 414 | 212 | 4 | 95 | 471 | 74 | 483 | 3.49e-99 | 307 |
| MsG0180004168.01.T01 | MTR_3g072940 | 38.889 | 414 | 212 | 4 | 95 | 471 | 74 | 483 | 3.49e-99 | 307 |
| MsG0180004168.01.T01 | MTR_6g051440 | 38.424 | 406 | 209 | 4 | 103 | 471 | 81 | 482 | 6.34e-91 | 285 |
| MsG0180004168.01.T01 | MTR_4g062190 | 35.782 | 422 | 215 | 5 | 99 | 470 | 27 | 442 | 2.32e-85 | 271 |
| MsG0180004168.01.T01 | MTR_1g115560 | 34.404 | 436 | 226 | 6 | 91 | 470 | 20 | 451 | 5.83e-85 | 270 |
| MsG0180004168.01.T01 | MTR_4g062270 | 35.104 | 433 | 240 | 4 | 76 | 470 | 4 | 433 | 1.52e-84 | 268 |
| MsG0180004168.01.T01 | MTR_2g096210 | 36.054 | 441 | 223 | 9 | 85 | 472 | 12 | 446 | 1.66e-83 | 266 |
| MsG0180004168.01.T01 | MTR_4g054260 | 55.230 | 239 | 90 | 4 | 252 | 473 | 87 | 325 | 2.94e-83 | 260 |
| MsG0180004168.01.T01 | MTR_4g062170 | 35.880 | 432 | 223 | 7 | 88 | 470 | 15 | 441 | 2.60e-82 | 263 |
| MsG0180004168.01.T01 | MTR_4g053905 | 52.830 | 159 | 42 | 1 | 348 | 473 | 1 | 159 | 6.48e-49 | 165 |
| MsG0180004168.01.T01 | MTR_4g054265 | 52.586 | 116 | 54 | 1 | 84 | 199 | 3 | 117 | 1.47e-35 | 128 |
| MsG0180004168.01.T01 | MTR_7g086260 | 59.615 | 52 | 21 | 0 | 346 | 397 | 25 | 76 | 1.09e-13 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180004168.01.T01 | AT2G26640 | 70.707 | 495 | 112 | 1 | 18 | 479 | 15 | 509 | 0.0 | 739 |
| MsG0180004168.01.T01 | AT1G04220 | 69.349 | 522 | 114 | 7 | 3 | 483 | 9 | 525 | 0.0 | 737 |
| MsG0180004168.01.T01 | AT5G43760 | 70.565 | 496 | 107 | 4 | 26 | 482 | 34 | 529 | 0.0 | 688 |
| MsG0180004168.01.T01 | AT1G19440 | 61.020 | 490 | 157 | 2 | 15 | 471 | 24 | 512 | 0.0 | 620 |
| MsG0180004168.01.T01 | AT2G16280 | 59.388 | 490 | 165 | 2 | 15 | 471 | 20 | 508 | 0.0 | 612 |
| MsG0180004168.01.T01 | AT1G01120 | 56.653 | 496 | 176 | 4 | 17 | 473 | 31 | 526 | 0.0 | 593 |
| MsG0180004168.01.T01 | AT4G34510 | 57.233 | 477 | 164 | 5 | 31 | 473 | 15 | 485 | 0.0 | 562 |
| MsG0180004168.01.T01 | AT1G68530 | 54.564 | 493 | 190 | 2 | 20 | 479 | 6 | 497 | 0.0 | 560 |
| MsG0180004168.01.T01 | AT1G25450 | 53.955 | 493 | 193 | 2 | 20 | 479 | 1 | 492 | 0.0 | 547 |
| MsG0180004168.01.T01 | AT2G26250 | 52.326 | 516 | 182 | 6 | 17 | 471 | 36 | 548 | 0.0 | 536 |
| MsG0180004168.01.T01 | AT4G34250 | 51.653 | 484 | 194 | 4 | 29 | 473 | 5 | 487 | 2.79e-170 | 489 |
| MsG0180004168.01.T01 | AT4G34520 | 51.235 | 486 | 192 | 5 | 32 | 473 | 6 | 490 | 8.87e-167 | 480 |
| MsG0180004168.01.T01 | AT2G15090 | 51.489 | 470 | 185 | 5 | 46 | 473 | 11 | 479 | 3.82e-165 | 475 |
| MsG0180004168.01.T01 | AT2G46720 | 50.676 | 444 | 181 | 4 | 66 | 473 | 24 | 465 | 7.04e-165 | 474 |
| MsG0180004168.01.T01 | AT3G10280 | 50.588 | 425 | 162 | 5 | 89 | 473 | 42 | 458 | 3.09e-156 | 452 |
| MsG0180004168.01.T01 | AT1G68530 | 56.522 | 345 | 148 | 2 | 20 | 363 | 6 | 349 | 5.47e-140 | 407 |
| MsG0180004168.01.T01 | AT1G71160 | 42.553 | 423 | 207 | 4 | 83 | 471 | 26 | 446 | 4.09e-126 | 375 |
| MsG0180004168.01.T01 | AT5G49070 | 42.290 | 428 | 210 | 4 | 87 | 479 | 36 | 461 | 1.09e-117 | 353 |
| MsG0180004168.01.T01 | AT3G52160 | 38.367 | 490 | 219 | 7 | 6 | 462 | 10 | 449 | 1.05e-114 | 345 |
| MsG0180004168.01.T01 | AT3G52160 | 43.288 | 365 | 143 | 4 | 131 | 462 | 3 | 336 | 1.33e-103 | 313 |
| MsG0180004168.01.T01 | AT2G28630 | 36.235 | 425 | 209 | 8 | 101 | 470 | 29 | 446 | 1.16e-86 | 274 |
| MsG0180004168.01.T01 | AT2G28630 | 36.235 | 425 | 209 | 8 | 101 | 470 | 29 | 446 | 1.16e-86 | 274 |
| MsG0180004168.01.T01 | AT1G07720 | 35.897 | 429 | 210 | 7 | 99 | 470 | 27 | 447 | 9.57e-84 | 266 |
| MsG0180004168.01.T01 | AT1G07720 | 35.897 | 429 | 210 | 7 | 99 | 470 | 70 | 490 | 1.65e-83 | 267 |
| MsG0180004168.01.T01 | AT5G04530 | 34.198 | 424 | 234 | 6 | 89 | 470 | 17 | 437 | 5.07e-83 | 264 |
| MsG0180004168.01.T01 | AT5G49070 | 42.294 | 279 | 160 | 1 | 87 | 365 | 36 | 313 | 1.80e-77 | 245 |
Find 97 sgRNAs with CRISPR-Local
Find 154 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCACACTCAACTGGTATTT+TGG | 0.148092 | 1:+74348178 | MsG0180004168.01.T01:CDS |
| GGCTAAGGATATTGGGATTT+TGG | 0.160476 | 1:+74347352 | MsG0180004168.01.T01:CDS |
| TTCACTGATAGAAGAAAATT+TGG | 0.183181 | 1:-74346828 | None:intergenic |
| ATTTCTTCTCATCTTCTTCT+TGG | 0.218715 | 1:-74348363 | None:intergenic |
| TAACTCTTGGAAAATTTATA+AGG | 0.234565 | 1:-74346724 | None:intergenic |
| GTACATGTGTATTCTTGTTT+TGG | 0.247208 | 1:-74347104 | None:intergenic |
| TGCTGGTGGAAGAGCTGTTT+TGG | 0.263824 | 1:+74348591 | MsG0180004168.01.T01:CDS |
| TTTGCTGTCAGAAGCTTTGT+TGG | 0.296454 | 1:-74348266 | None:intergenic |
| GTGAATCATTATAAGTTAAG+AGG | 0.297927 | 1:+74347425 | MsG0180004168.01.T01:CDS |
| TGGCAAATTGCATTTGGTTC+TGG | 0.298723 | 1:+74348765 | MsG0180004168.01.T01:CDS |
| ATCAAATTGTTTGTTTAGAA+TGG | 0.305639 | 1:+74348222 | MsG0180004168.01.T01:CDS |
| ATCACTCTCAAAAGATTTAA+TGG | 0.313780 | 1:+74348396 | MsG0180004168.01.T01:CDS |
| TGGTGCTATTGATGAGCTTT+TGG | 0.331199 | 1:+74347313 | MsG0180004168.01.T01:CDS |
| GTATAACATATGATATGTTT+TGG | 0.336428 | 1:-74346607 | None:intergenic |
| ATGAATAGGTCTGAATTAAC+AGG | 0.348386 | 1:+74347140 | MsG0180004168.01.T01:CDS |
| TCCAAACTCTTATGCCTTAG+TGG | 0.348892 | 1:+74348141 | MsG0180004168.01.T01:CDS |
| GAACCAATGGTTGCCACTTT+AGG | 0.351358 | 1:-74348891 | None:intergenic |
| GCTTCAGCCATACAAGGATT+TGG | 0.353700 | 1:-74347263 | None:intergenic |
| GTGTTAAGGCTAAGGATATT+GGG | 0.356405 | 1:+74347345 | MsG0180004168.01.T01:CDS |
| AAAATTTATAAGGACTTGTT+TGG | 0.362540 | 1:-74346714 | None:intergenic |
| GGTGTTAAGGCTAAGGATAT+TGG | 0.367782 | 1:+74347344 | MsG0180004168.01.T01:CDS |
| AACACTATGTACTAGTCTTA+TGG | 0.372563 | 1:+74347010 | MsG0180004168.01.T01:CDS |
| ATACTTGAGAGGTCTGGTTT+AGG | 0.382514 | 1:+74347200 | MsG0180004168.01.T01:CDS |
| AAGTTATAATCTTGGTGGTA+TGG | 0.383403 | 1:+74347457 | MsG0180004168.01.T01:CDS |
| ACCACTAAGGCATAAGAGTT+TGG | 0.387819 | 1:-74348142 | None:intergenic |
| AGGACTTGGCAAATTGCATT+TGG | 0.392984 | 1:+74348759 | MsG0180004168.01.T01:CDS |
| GAAGATGAGAAGAAATCAAT+TGG | 0.399460 | 1:+74348370 | MsG0180004168.01.T01:CDS |
| GTGATTCAAAAGAAACTGAT+TGG | 0.399645 | 1:-74346785 | None:intergenic |
| GGTGGAACACTCAATATTGC+TGG | 0.400152 | 1:-74347242 | None:intergenic |
| AATGTTCAAAGTTATAATCT+TGG | 0.402519 | 1:+74347449 | MsG0180004168.01.T01:CDS |
| TCAAATTGTTTGTTTAGAAT+GGG | 0.411142 | 1:+74348223 | MsG0180004168.01.T01:CDS |
| GCCACTTTAGGCACATGAAC+AGG | 0.414943 | 1:-74348879 | None:intergenic |
| CACACCGTCCGAACACATAA+AGG | 0.416666 | 1:+74348310 | MsG0180004168.01.T01:CDS |
| AAATTGAAGTAATTAACTCT+TGG | 0.422322 | 1:-74346737 | None:intergenic |
| GGTGGTATGGGTTGTAGTGC+TGG | 0.424592 | 1:+74347470 | MsG0180004168.01.T01:CDS |
| TCAAAAGCTAATTTAAAATC+AGG | 0.424969 | 1:-74348553 | None:intergenic |
| TAATTTAAAATCAGGAATGT+AGG | 0.428965 | 1:-74348545 | None:intergenic |
| CATATAGTTGAACAATATCA+TGG | 0.436793 | 1:-74346959 | None:intergenic |
| AACCATTGGTTCATCAAGTT+AGG | 0.443186 | 1:+74348902 | MsG0180004168.01.T01:CDS |
| TTTGGAGAAAACTGGTGTTA+AGG | 0.445941 | 1:+74347331 | MsG0180004168.01.T01:CDS |
| GAAGCTGAGGAAGTTATGTT+TGG | 0.456300 | 1:+74347293 | MsG0180004168.01.T01:CDS |
| CCTTGCTAAGCAGCTCCTAC+AGG | 0.458272 | 1:+74347508 | MsG0180004168.01.T01:CDS |
| TACTTCAATTTCAATACTCA+TGG | 0.459172 | 1:+74346749 | MsG0180004168.01.T01:exon |
| TTCCTTGCTTCAGCCATACA+AGG | 0.461441 | 1:-74347269 | None:intergenic |
| GGAGGATTAGAAAAGGTGAT+AGG | 0.461538 | 1:+74348739 | MsG0180004168.01.T01:CDS |
| AGTTATAATCTTGGTGGTAT+GGG | 0.463605 | 1:+74347458 | MsG0180004168.01.T01:CDS |
| AAGAAAATACTTGAGAGGTC+TGG | 0.464675 | 1:+74347194 | MsG0180004168.01.T01:CDS |
| CGTCCGCGCCTTTATGTGTT+CGG | 0.465432 | 1:-74348318 | None:intergenic |
| TCAACCAAGTAAACACCTCT+TGG | 0.467981 | 1:-74347065 | None:intergenic |
| TCCTGTTCATGTGCCTAAAG+TGG | 0.481276 | 1:+74348878 | MsG0180004168.01.T01:CDS |
| TGGAGAACATCACACTCAAC+TGG | 0.498098 | 1:+74348170 | MsG0180004168.01.T01:CDS |
| GTGGAACACTCAATATTGCT+GGG | 0.499640 | 1:-74347241 | None:intergenic |
| AATTTAAAATCAGGAATGTA+GGG | 0.500091 | 1:-74348544 | None:intergenic |
| TCTGACATAGGTAGGACTAA+TGG | 0.501024 | 1:-74348463 | None:intergenic |
| TTCCTAACTTGATGAACCAA+TGG | 0.503576 | 1:-74348904 | None:intergenic |
| TCGTCCAAGAGGTGTTTACT+TGG | 0.505159 | 1:+74347061 | MsG0180004168.01.T01:CDS |
| TGAATCATTATAAGTTAAGA+GGG | 0.506304 | 1:+74347426 | MsG0180004168.01.T01:CDS |
| GTTCAAAGTTATAATCTTGG+TGG | 0.515718 | 1:+74347452 | MsG0180004168.01.T01:CDS |
| TTAGAAAAGGTGATAGGACT+TGG | 0.517295 | 1:+74348745 | MsG0180004168.01.T01:CDS |
| AAACTTAAATATGTGAAACT+TGG | 0.519226 | 1:+74346849 | MsG0180004168.01.T01:CDS |
| CGCGCCTTTATGTGTTCGGA+CGG | 0.519941 | 1:-74348314 | None:intergenic |
| AAAGATTTAATGGCGGTCGC+CGG | 0.521478 | 1:+74348406 | MsG0180004168.01.T01:CDS |
| GAAAACTGGTGTTAAGGCTA+AGG | 0.522687 | 1:+74347337 | MsG0180004168.01.T01:CDS |
| TGTTCCACCAAATCCTTGTA+TGG | 0.528304 | 1:+74347256 | MsG0180004168.01.T01:CDS |
| GTTCTCCATGCTCACCACTA+AGG | 0.531929 | 1:-74348155 | None:intergenic |
| TGGACCAAGTGTTGTGATGT+TGG | 0.537554 | 1:-74348443 | None:intergenic |
| TTCAAAAGAAAATACTTGAG+AGG | 0.537603 | 1:+74347189 | MsG0180004168.01.T01:CDS |
| TGTCAGAAGCTTTGTTGGAG+AGG | 0.549538 | 1:-74348261 | None:intergenic |
| TTTCTCCTTAGCTGGATCAA+CGG | 0.549864 | 1:-74348826 | None:intergenic |
| GTGCCTAAAGTGGCAACCAT+TGG | 0.552723 | 1:+74348888 | MsG0180004168.01.T01:CDS |
| GCTAAAGGGAGGATTAGAAA+AGG | 0.553131 | 1:+74348732 | MsG0180004168.01.T01:intron |
| AATTGTTTGTTTAGAATGGG+AGG | 0.568502 | 1:+74348226 | MsG0180004168.01.T01:CDS |
| TCAGCCATACAAGGATTTGG+TGG | 0.568816 | 1:-74347260 | None:intergenic |
| TCATGAATCTCATCCATCCA+TGG | 0.570459 | 1:-74348852 | None:intergenic |
| AAAACCAACATCACAACACT+TGG | 0.570838 | 1:+74348439 | MsG0180004168.01.T01:CDS |
| AACAGAAGCTGTTCTGACAT+AGG | 0.577420 | 1:-74348475 | None:intergenic |
| TTCGGACGGTGTGGATCAGT+TGG | 0.577447 | 1:-74348300 | None:intergenic |
| CAAGTGCTTAATTGTGCTAG+AGG | 0.580140 | 1:-74346633 | None:intergenic |
| GGCGCGGACGACAGATCATA+CGG | 0.585092 | 1:+74348331 | MsG0180004168.01.T01:CDS |
| GAAACAAAATCAAATGAGAG+TGG | 0.588416 | 1:-74346675 | None:intergenic |
| GAAGCTGTTCTGACATAGGT+AGG | 0.592086 | 1:-74348471 | None:intergenic |
| ATCCTTGTATGGCTGAAGCA+AGG | 0.595750 | 1:+74347267 | MsG0180004168.01.T01:CDS |
| GTGCTGTGTGGCGTGCATTG+AGG | 0.597254 | 1:+74348802 | MsG0180004168.01.T01:CDS |
| GAGGACCGTTGATCCAGCTA+AGG | 0.607671 | 1:+74348821 | MsG0180004168.01.T01:CDS |
| TTATGCCTTAGTGGTGAGCA+TGG | 0.609284 | 1:+74348150 | MsG0180004168.01.T01:CDS |
| ATAGCAGAAAGAGAAGGTGT+AGG | 0.612815 | 1:-74347398 | None:intergenic |
| CCTGTAGGAGCTGCTTAGCA+AGG | 0.618822 | 1:-74347508 | None:intergenic |
| TGAAGCAAGGAAAGAAGCTG+AGG | 0.624018 | 1:+74347280 | MsG0180004168.01.T01:CDS |
| AAGTGCTTAATTGTGCTAGA+GGG | 0.628631 | 1:-74346632 | None:intergenic |
| CTTTATGTGTTCGGACGGTG+TGG | 0.639949 | 1:-74348309 | None:intergenic |
| TGGAACACTCAATATTGCTG+GGG | 0.643916 | 1:-74347240 | None:intergenic |
| ACAATCATAGCAGAAAGAGA+AGG | 0.652463 | 1:-74347404 | None:intergenic |
| TACTTCATGAGTCGTCCAAG+AGG | 0.658967 | 1:+74347050 | MsG0180004168.01.T01:CDS |
| GGAACACTCAATATTGCTGG+GGG | 0.681776 | 1:-74347239 | None:intergenic |
| CGTCCGAACACATAAAGGCG+CGG | 0.707110 | 1:+74348315 | MsG0180004168.01.T01:CDS |
| ACTCTCAAAAGATTTAATGG+CGG | 0.725346 | 1:+74348399 | MsG0180004168.01.T01:CDS |
| TTAAATGTAACAGTGCTGTG+TGG | 0.778579 | 1:+74348790 | MsG0180004168.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAGTATTATGAATAAAGAA+TGG | - | Chr1:74347575-74347594 | None:intergenic | 15.0% |
| !! | TAATTTCAATGATTTATTCA+TGG | - | Chr1:74348013-74348032 | None:intergenic | 15.0% |
| !!! | AACATTTTTGTTATATGTAT+AGG | + | Chr1:74348114-74348133 | MsG0180004168.01.T01:intron | 15.0% |
| !! | AAACTTAAATATGTGAAACT+TGG | + | Chr1:74346849-74346868 | MsG0180004168.01.T01:CDS | 20.0% |
| !! | AAATTGAAGTAATTAACTCT+TGG | - | Chr1:74346740-74346759 | None:intergenic | 20.0% |
| !! | AATCTTTACAATTACAACTA+AGG | + | Chr1:74347985-74348004 | MsG0180004168.01.T01:intron | 20.0% |
| !! | AATGTTCAAAGTTATAATCT+TGG | + | Chr1:74347449-74347468 | MsG0180004168.01.T01:CDS | 20.0% |
| !! | ATCAAATTGTTTGTTTAGAA+TGG | + | Chr1:74348222-74348241 | MsG0180004168.01.T01:CDS | 20.0% |
| !! | ATCTTTACAATTACAACTAA+GGG | + | Chr1:74347986-74348005 | MsG0180004168.01.T01:intron | 20.0% |
| !! | TAACTCTTGGAAAATTTATA+AGG | - | Chr1:74346727-74346746 | None:intergenic | 20.0% |
| !! | TAGTTGTAATTGTAAAGATT+TGG | - | Chr1:74347985-74348004 | None:intergenic | 20.0% |
| !! | TGAATCATTATAAGTTAAGA+GGG | + | Chr1:74347426-74347445 | MsG0180004168.01.T01:CDS | 20.0% |
| !!! | AAAATTTATAAGGACTTGTT+TGG | - | Chr1:74346717-74346736 | None:intergenic | 20.0% |
| !!! | AATACTATTGTTTAACTTCA+TGG | + | Chr1:74347587-74347606 | MsG0180004168.01.T01:intron | 20.0% |
| !!! | AATTTAAAATCAGGAATGTA+GGG | - | Chr1:74348547-74348566 | None:intergenic | 20.0% |
| !!! | ATTGTTTTGCTATAATAACA+TGG | - | Chr1:74348088-74348107 | None:intergenic | 20.0% |
| !!! | CTATAATAACATGGTATTTT+TGG | - | Chr1:74348079-74348098 | None:intergenic | 20.0% |
| !!! | GTATAACATATGATATGTTT+TGG | - | Chr1:74346610-74346629 | None:intergenic | 20.0% |
| !!! | TAATTTAAAATCAGGAATGT+AGG | - | Chr1:74348548-74348567 | None:intergenic | 20.0% |
| !!! | TACATTTTCTGATGAAAATT+TGG | + | Chr1:74347163-74347182 | MsG0180004168.01.T01:CDS | 20.0% |
| !!! | TCAAAAGCTAATTTAAAATC+AGG | - | Chr1:74348556-74348575 | None:intergenic | 20.0% |
| !!! | TCAAATTGTTTGTTTAGAAT+GGG | + | Chr1:74348223-74348242 | MsG0180004168.01.T01:CDS | 20.0% |
| !!! | TTCAAATTATAGCTTTAAGT+TGG | + | Chr1:74347691-74347710 | MsG0180004168.01.T01:intron | 20.0% |
| !!! | TTCAAGTTAGAACAAAATTA+GGG | + | Chr1:74347662-74347681 | MsG0180004168.01.T01:intron | 20.0% |
| ! | AAAATCTTGATCTTAGTGAT+TGG | + | Chr1:74348626-74348645 | MsG0180004168.01.T01:intron | 25.0% |
| ! | AAATGTAGACCAAAAAAAGA+AGG | - | Chr1:74346576-74346595 | None:intergenic | 25.0% |
| ! | ACCAAAAGTAAATTAAGTAC+TGG | + | Chr1:74347802-74347821 | MsG0180004168.01.T01:intron | 25.0% |
| ! | ATCACTCTCAAAAGATTTAA+TGG | + | Chr1:74348396-74348415 | MsG0180004168.01.T01:CDS | 25.0% |
| ! | CATATAGTTGAACAATATCA+TGG | - | Chr1:74346962-74346981 | None:intergenic | 25.0% |
| ! | GTGAATCATTATAAGTTAAG+AGG | + | Chr1:74347425-74347444 | MsG0180004168.01.T01:CDS | 25.0% |
| ! | TACTTCAATTTCAATACTCA+TGG | + | Chr1:74346749-74346768 | MsG0180004168.01.T01:exon | 25.0% |
| ! | TAGTTCATTATGGTATGAAT+TGG | + | Chr1:74348698-74348717 | MsG0180004168.01.T01:intron | 25.0% |
| ! | TCAAGTTAGAACAAAATTAG+GGG | + | Chr1:74347663-74347682 | MsG0180004168.01.T01:intron | 25.0% |
| ! | TTCAAAAGAAAATACTTGAG+AGG | + | Chr1:74347189-74347208 | MsG0180004168.01.T01:CDS | 25.0% |
| ! | TTCACTGATAGAAGAAAATT+TGG | - | Chr1:74346831-74346850 | None:intergenic | 25.0% |
| ! | TTGTAAAGATTTGGACAATT+TGG | - | Chr1:74347976-74347995 | None:intergenic | 25.0% |
| !! | ACCAGTACTTAATTTACTTT+TGG | - | Chr1:74347806-74347825 | None:intergenic | 25.0% |
| !! | ATTATTGACTATAGTTTGGT+TGG | - | Chr1:74347952-74347971 | None:intergenic | 25.0% |
| !! | CTAGAGAAATTTTCATGAAT+AGG | + | Chr1:74347126-74347145 | MsG0180004168.01.T01:CDS | 25.0% |
| !! | CTTCAAGTTAGAACAAAATT+AGG | + | Chr1:74347661-74347680 | MsG0180004168.01.T01:intron | 25.0% |
| !! | TGGTATTATTGACTATAGTT+TGG | - | Chr1:74347956-74347975 | None:intergenic | 25.0% |
| !! | TTATTGACTATAGTTTGGTT+GGG | - | Chr1:74347951-74347970 | None:intergenic | 25.0% |
| !!! | CATTCAATTCCTTCTTTTTT+TGG | + | Chr1:74346564-74346583 | MsG0180004168.01.T01:five_prime_UTR | 25.0% |
| !!! | TAGCTTTTGAGATTAAGTAA+TGG | - | Chr1:74346878-74346897 | None:intergenic | 25.0% |
| AAGAATGACACTGAATAGAT+TGG | + | Chr1:74348663-74348682 | MsG0180004168.01.T01:intron | 30.0% | |
| ACACTTCTAGTAGTTCATTA+TGG | + | Chr1:74348688-74348707 | MsG0180004168.01.T01:intron | 30.0% | |
| ACTCTCAAAAGATTTAATGG+CGG | + | Chr1:74348399-74348418 | MsG0180004168.01.T01:CDS | 30.0% | |
| ATGAATAGGTCTGAATTAAC+AGG | + | Chr1:74347140-74347159 | MsG0180004168.01.T01:CDS | 30.0% | |
| ATTTCTTCTCATCTTCTTCT+TGG | - | Chr1:74348366-74348385 | None:intergenic | 30.0% | |
| CAAAAAGTGGTATGAGTAAA+AGG | - | Chr1:74346905-74346924 | None:intergenic | 30.0% | |
| GAAACAAAATCAAATGAGAG+TGG | - | Chr1:74346678-74346697 | None:intergenic | 30.0% | |
| GAAGATGAGAAGAAATCAAT+TGG | + | Chr1:74348370-74348389 | MsG0180004168.01.T01:CDS | 30.0% | |
| GTGATTCAAAAGAAACTGAT+TGG | - | Chr1:74346788-74346807 | None:intergenic | 30.0% | |
| GTTCAAAGTTATAATCTTGG+TGG | + | Chr1:74347452-74347471 | MsG0180004168.01.T01:CDS | 30.0% | |
| TGTTATAACTGCAAGTAACA+TGG | - | Chr1:74347897-74347916 | None:intergenic | 30.0% | |
| ! | AAGTTATAATCTTGGTGGTA+TGG | + | Chr1:74347457-74347476 | MsG0180004168.01.T01:CDS | 30.0% |
| ! | AATTGTTTGTTTAGAATGGG+AGG | + | Chr1:74348226-74348245 | MsG0180004168.01.T01:CDS | 30.0% |
| ! | AGTTATAATCTTGGTGGTAT+GGG | + | Chr1:74347458-74347477 | MsG0180004168.01.T01:CDS | 30.0% |
| ! | TATTGACTATAGTTTGGTTG+GGG | - | Chr1:74347950-74347969 | None:intergenic | 30.0% |
| !! | AACACTATGTACTAGTCTTA+TGG | + | Chr1:74347010-74347029 | MsG0180004168.01.T01:CDS | 30.0% |
| !! | CTTTTACTCATACCACTTTT+TGG | + | Chr1:74346903-74346922 | MsG0180004168.01.T01:CDS | 30.0% |
| !! | GTACATGTGTATTCTTGTTT+TGG | - | Chr1:74347107-74347126 | None:intergenic | 30.0% |
| !! | GTTTAACTTCATGGTCATTT+TGG | + | Chr1:74347596-74347615 | MsG0180004168.01.T01:intron | 30.0% |
| AAAACCAACATCACAACACT+TGG | + | Chr1:74348439-74348458 | MsG0180004168.01.T01:CDS | 35.0% | |
| AAGAAAATACTTGAGAGGTC+TGG | + | Chr1:74347194-74347213 | MsG0180004168.01.T01:CDS | 35.0% | |
| AAGTGCTTAATTGTGCTAGA+GGG | - | Chr1:74346635-74346654 | None:intergenic | 35.0% | |
| ACAATCATAGCAGAAAGAGA+AGG | - | Chr1:74347407-74347426 | None:intergenic | 35.0% | |
| GTGTTAAGGCTAAGGATATT+GGG | + | Chr1:74347345-74347364 | MsG0180004168.01.T01:CDS | 35.0% | |
| TAAGGAGAAAAATCCATGGA+TGG | + | Chr1:74348839-74348858 | MsG0180004168.01.T01:CDS | 35.0% | |
| TGATCTTAGTGATTGGCATA+TGG | + | Chr1:74348633-74348652 | MsG0180004168.01.T01:intron | 35.0% | |
| TGGCTTATACTGAAGCTAAA+GGG | + | Chr1:74348718-74348737 | MsG0180004168.01.T01:intron | 35.0% | |
| TTAAATGTAACAGTGCTGTG+TGG | + | Chr1:74348790-74348809 | MsG0180004168.01.T01:CDS | 35.0% | |
| TTAGAAAAGGTGATAGGACT+TGG | + | Chr1:74348745-74348764 | MsG0180004168.01.T01:CDS | 35.0% | |
| TTGGCTTATACTGAAGCTAA+AGG | + | Chr1:74348717-74348736 | MsG0180004168.01.T01:intron | 35.0% | |
| TTGGGGCAGTGTATTAAATA+GGG | - | Chr1:74347933-74347952 | None:intergenic | 35.0% | |
| ! | ATCACACTCAACTGGTATTT+TGG | + | Chr1:74348178-74348197 | MsG0180004168.01.T01:CDS | 35.0% |
| ! | CATTTTTGTATTCATGCTGG+TGG | + | Chr1:74348577-74348596 | MsG0180004168.01.T01:CDS | 35.0% |
| ! | CTATTCAGTGTCATTCTTGA+TGG | - | Chr1:74348661-74348680 | None:intergenic | 35.0% |
| ! | GAGCATTTTTGTATTCATGC+TGG | + | Chr1:74348574-74348593 | MsG0180004168.01.T01:CDS | 35.0% |
| ! | GGAAGTTTTCTTCTTTCTTG+AGG | - | Chr1:74346810-74346829 | None:intergenic | 35.0% |
| ! | TTTGGAGAAAACTGGTGTTA+AGG | + | Chr1:74347331-74347350 | MsG0180004168.01.T01:CDS | 35.0% |
| !! | AAGAGCTGTTTTGGATGAAT+TGG | + | Chr1:74348600-74348619 | MsG0180004168.01.T01:CDS | 35.0% |
| AACAGAAGCTGTTCTGACAT+AGG | - | Chr1:74348478-74348497 | None:intergenic | 40.0% | |
| AATCTGTACATGTGTGTGTG+TGG | - | Chr1:74347872-74347891 | None:intergenic | 40.0% | |
| ACCACTAAGGCATAAGAGTT+TGG | - | Chr1:74348145-74348164 | None:intergenic | 40.0% | |
| AGGACTTGGCAAATTGCATT+TGG | + | Chr1:74348759-74348778 | MsG0180004168.01.T01:CDS | 40.0% | |
| CAAGTGCTTAATTGTGCTAG+AGG | - | Chr1:74346636-74346655 | None:intergenic | 40.0% | |
| CAGCTAAGGAGAAAAATCCA+TGG | + | Chr1:74348835-74348854 | MsG0180004168.01.T01:CDS | 40.0% | |
| CTTATACTGAAGCTAAAGGG+AGG | + | Chr1:74348721-74348740 | MsG0180004168.01.T01:intron | 40.0% | |
| GAAGCTGAGGAAGTTATGTT+TGG | + | Chr1:74347293-74347312 | MsG0180004168.01.T01:CDS | 40.0% | |
| GCTAAAGGGAGGATTAGAAA+AGG | + | Chr1:74348732-74348751 | MsG0180004168.01.T01:intron | 40.0% | |
| GCTTCAAGAAACTTCTCTCA+TGG | - | Chr1:74347829-74347848 | None:intergenic | 40.0% | |
| GGAGGATTAGAAAAGGTGAT+AGG | + | Chr1:74348739-74348758 | MsG0180004168.01.T01:CDS | 40.0% | |
| GGTGTTAAGGCTAAGGATAT+TGG | + | Chr1:74347344-74347363 | MsG0180004168.01.T01:CDS | 40.0% | |
| GTGGAACACTCAATATTGCT+GGG | - | Chr1:74347244-74347263 | None:intergenic | 40.0% | |
| GTTGGGGCAGTGTATTAAAT+AGG | - | Chr1:74347934-74347953 | None:intergenic | 40.0% | |
| TCAACCAAGTAAACACCTCT+TGG | - | Chr1:74347068-74347087 | None:intergenic | 40.0% | |
| TCATGAATCTCATCCATCCA+TGG | - | Chr1:74348855-74348874 | None:intergenic | 40.0% | |
| TCCAAACTCTTATGCCTTAG+TGG | + | Chr1:74348141-74348160 | MsG0180004168.01.T01:CDS | 40.0% | |
| TCTGACATAGGTAGGACTAA+TGG | - | Chr1:74348466-74348485 | None:intergenic | 40.0% | |
| TGGAACACTCAATATTGCTG+GGG | - | Chr1:74347243-74347262 | None:intergenic | 40.0% | |
| TGTTCCACCAAATCCTTGTA+TGG | + | Chr1:74347256-74347275 | MsG0180004168.01.T01:CDS | 40.0% | |
| TTTCTCCTTAGCTGGATCAA+CGG | - | Chr1:74348829-74348848 | None:intergenic | 40.0% | |
| ! | ATACTTGAGAGGTCTGGTTT+AGG | + | Chr1:74347200-74347219 | MsG0180004168.01.T01:CDS | 40.0% |
| ! | ATAGCAGAAAGAGAAGGTGT+AGG | - | Chr1:74347401-74347420 | None:intergenic | 40.0% |
| ! | CATGGATTTTTCTCCTTAGC+TGG | - | Chr1:74348837-74348856 | None:intergenic | 40.0% |
| ! | GAAAACTGGTGTTAAGGCTA+AGG | + | Chr1:74347337-74347356 | MsG0180004168.01.T01:CDS | 40.0% |
| ! | GGCTAAGGATATTGGGATTT+TGG | + | Chr1:74347352-74347371 | MsG0180004168.01.T01:CDS | 40.0% |
| ! | TGGCAAATTGCATTTGGTTC+TGG | + | Chr1:74348765-74348784 | MsG0180004168.01.T01:CDS | 40.0% |
| ! | TTTGCTGTCAGAAGCTTTGT+TGG | - | Chr1:74348269-74348288 | None:intergenic | 40.0% |
| !! | GATGAGCTTTTGGAGAAAAC+TGG | + | Chr1:74347323-74347342 | MsG0180004168.01.T01:CDS | 40.0% |
| !! | GCTTCTGTTTTTCGCAACTT+TGG | + | Chr1:74348489-74348508 | MsG0180004168.01.T01:CDS | 40.0% |
| !!! | TGGTGCTATTGATGAGCTTT+TGG | + | Chr1:74347313-74347332 | MsG0180004168.01.T01:CDS | 40.0% |
| AAAGATTTAATGGCGGTCGC+CGG | + | Chr1:74348406-74348425 | MsG0180004168.01.T01:CDS | 45.0% | |
| ATCCTTGTATGGCTGAAGCA+AGG | + | Chr1:74347267-74347286 | MsG0180004168.01.T01:CDS | 45.0% | |
| ATGCATGCAAACCAACCTGT+AGG | - | Chr1:74347526-74347545 | None:intergenic | 45.0% | |
| ATGTGTGTGTGTGGACAACT+GGG | - | Chr1:74347863-74347882 | None:intergenic | 45.0% | |
| GAAGCTGTTCTGACATAGGT+AGG | - | Chr1:74348474-74348493 | None:intergenic | 45.0% | |
| GCTTCAGCCATACAAGGATT+TGG | - | Chr1:74347266-74347285 | None:intergenic | 45.0% | |
| GGAACACTCAATATTGCTGG+GGG | - | Chr1:74347242-74347261 | None:intergenic | 45.0% | |
| GGGCAGTGTATTAAATAGGG+TGG | - | Chr1:74347930-74347949 | None:intergenic | 45.0% | |
| GGTGGAACACTCAATATTGC+TGG | - | Chr1:74347245-74347264 | None:intergenic | 45.0% | |
| TACTTCATGAGTCGTCCAAG+AGG | + | Chr1:74347050-74347069 | MsG0180004168.01.T01:CDS | 45.0% | |
| TCAGCCATACAAGGATTTGG+TGG | - | Chr1:74347263-74347282 | None:intergenic | 45.0% | |
| TCCTGTTCATGTGCCTAAAG+TGG | + | Chr1:74348878-74348897 | MsG0180004168.01.T01:CDS | 45.0% | |
| TGAAGCAAGGAAAGAAGCTG+AGG | + | Chr1:74347280-74347299 | MsG0180004168.01.T01:CDS | 45.0% | |
| TGGAGAACATCACACTCAAC+TGG | + | Chr1:74348170-74348189 | MsG0180004168.01.T01:CDS | 45.0% | |
| TTATGCCTTAGTGGTGAGCA+TGG | + | Chr1:74348150-74348169 | MsG0180004168.01.T01:CDS | 45.0% | |
| TTCCTTGCTTCAGCCATACA+AGG | - | Chr1:74347272-74347291 | None:intergenic | 45.0% | |
| ! | TGGACCAAGTGTTGTGATGT+TGG | - | Chr1:74348446-74348465 | None:intergenic | 45.0% |
| !! | GAACCAATGGTTGCCACTTT+AGG | - | Chr1:74348894-74348913 | None:intergenic | 45.0% |
| !! | TCGTCCAAGAGGTGTTTACT+TGG | + | Chr1:74347061-74347080 | MsG0180004168.01.T01:CDS | 45.0% |
| !! | TGTCAGAAGCTTTGTTGGAG+AGG | - | Chr1:74348264-74348283 | None:intergenic | 45.0% |
| !!! | GTTGGTTTTGAGTGCTTCTC+CGG | - | Chr1:74348428-74348447 | None:intergenic | 45.0% |
| CACACCGTCCGAACACATAA+AGG | + | Chr1:74348310-74348329 | MsG0180004168.01.T01:CDS | 50.0% | |
| CATGTGTGTGTGTGGACAAC+TGG | - | Chr1:74347864-74347883 | None:intergenic | 50.0% | |
| CTTTATGTGTTCGGACGGTG+TGG | - | Chr1:74348312-74348331 | None:intergenic | 50.0% | |
| GCTGAAGCTGCTCCAAAAAG+TGG | - | Chr1:74346918-74346937 | None:intergenic | 50.0% | |
| GTGCCTAAAGTGGCAACCAT+TGG | + | Chr1:74348888-74348907 | MsG0180004168.01.T01:CDS | 50.0% | |
| GTTCTCCATGCTCACCACTA+AGG | - | Chr1:74348158-74348177 | None:intergenic | 50.0% | |
| TGTGTGTGTGTGGACAACTG+GGG | - | Chr1:74347862-74347881 | None:intergenic | 50.0% | |
| ! | GCCACTTTAGGCACATGAAC+AGG | - | Chr1:74348882-74348901 | None:intergenic | 50.0% |
| ! | TGCTGGTGGAAGAGCTGTTT+TGG | + | Chr1:74348591-74348610 | MsG0180004168.01.T01:CDS | 50.0% |
| CCTGTAGGAGCTGCTTAGCA+AGG | - | Chr1:74347511-74347530 | None:intergenic | 55.0% | |
| CCTTGCTAAGCAGCTCCTAC+AGG | + | Chr1:74347508-74347527 | MsG0180004168.01.T01:CDS | 55.0% | |
| CGCGCCTTTATGTGTTCGGA+CGG | - | Chr1:74348317-74348336 | None:intergenic | 55.0% | |
| CGTCCGAACACATAAAGGCG+CGG | + | Chr1:74348315-74348334 | MsG0180004168.01.T01:CDS | 55.0% | |
| CGTCCGCGCCTTTATGTGTT+CGG | - | Chr1:74348321-74348340 | None:intergenic | 55.0% | |
| GAGGACCGTTGATCCAGCTA+AGG | + | Chr1:74348821-74348840 | MsG0180004168.01.T01:CDS | 55.0% | |
| GCTAAGCAGCTCCTACAGGT+TGG | + | Chr1:74347512-74347531 | MsG0180004168.01.T01:intron | 55.0% | |
| TTCGGACGGTGTGGATCAGT+TGG | - | Chr1:74348303-74348322 | None:intergenic | 55.0% | |
| ! | GGTGGTATGGGTTGTAGTGC+TGG | + | Chr1:74347470-74347489 | MsG0180004168.01.T01:CDS | 55.0% |
| GGCGCGGACGACAGATCATA+CGG | + | Chr1:74348331-74348350 | MsG0180004168.01.T01:CDS | 60.0% | |
| GTGCTGTGTGGCGTGCATTG+AGG | + | Chr1:74348802-74348821 | MsG0180004168.01.T01:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr1 | gene | 74346563 | 74348923 | 74346563 | ID=MsG0180004168.01;Name=MsG0180004168.01 |
| Chr1 | mRNA | 74346563 | 74348923 | 74346563 | ID=MsG0180004168.01.T01;Parent=MsG0180004168.01;Name=MsG0180004168.01.T01;_AED=0.49;_eAED=0.49;_QI=205|0.5|0.33|1|1|1|3|0|483 |
| Chr1 | exon | 74346563 | 74347529 | 74346563 | ID=MsG0180004168.01.T01:exon:5525;Parent=MsG0180004168.01.T01 |
| Chr1 | exon | 74348136 | 74348640 | 74348136 | ID=MsG0180004168.01.T01:exon:5526;Parent=MsG0180004168.01.T01 |
| Chr1 | exon | 74348739 | 74348923 | 74348739 | ID=MsG0180004168.01.T01:exon:5527;Parent=MsG0180004168.01.T01 |
| Chr1 | five_prime_UTR | 74346563 | 74346767 | 74346563 | ID=MsG0180004168.01.T01:five_prime_utr;Parent=MsG0180004168.01.T01 |
| Chr1 | CDS | 74346768 | 74347529 | 74346768 | ID=MsG0180004168.01.T01:cds;Parent=MsG0180004168.01.T01 |
| Chr1 | CDS | 74348136 | 74348640 | 74348136 | ID=MsG0180004168.01.T01:cds;Parent=MsG0180004168.01.T01 |
| Chr1 | CDS | 74348739 | 74348923 | 74348739 | ID=MsG0180004168.01.T01:cds;Parent=MsG0180004168.01.T01 |
| Gene Sequence |
| Protein sequence |
