AlfalfaGEDB | MsG0180004283.01

M. sativa cultivar ZhongmuNo.1 / MsG0180004283.01

KEGG: K15397
GO: GO:0003824 GO:0006633 GO:0008152 GO:0016020 GO:0016747
PFAM: PF08392 PF08541

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180004283.01.T01	XP_013468760.1	99.789	473	1	0	1	473	44	516	0	988
MsG0180004283.01.T02	XP_013468760.1	99.789	473	1	0	1	473	44	516	0	988

Showing 1 to 2 of 2 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180004283.01.T01	O48780	76.972	469	108	0	1	469	41	509	0	783
MsG0180004283.01.T02	O48780	76.972	469	108	0	1	469	41	509	0	783

Showing 1 to 2 of 2 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180004283.01.T01	A0A072VLT9	99.789	473	1	0	1	473	44	516	0.0	988
MsG0180004283.01.T02	A0A072VLT9	99.789	473	1	0	1	473	44	516	0.0	988

Showing 1 to 2 of 2 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0180004168.01	MsG0180004283.01	0.907553	4.473929e-81	7.975403e-77
MsG0180004283.01	MsG0180005429.01	0.820518	6.574716e-53	5.213540e-50
MsG0180004283.01	MsG0380015289.01	0.800345	1.505646e-48	6.994319e-46
MsG0180004283.01	MsG0580029919.01	0.827656	1.387125e-54	1.347538e-51
MsG0180004283.01	MsG0780040590.01	0.825192	5.359119e-54	4.850897e-51
MsG0180004283.01	MsG0780041482.01	0.832178	1.096047e-55	1.215664e-52

Showing 1 to 6 of 6 entries

Previous1Next

PPI

Show entries

Search:

Gene1	Gene2	Type
MsG0180004283.01	MsG0780041800.01	PPI
MsG0180004283.01	MsG0280009139.01	PPI
MsG0180004283.01	MsG0780041800.01	PPI
MsG0180004283.01	MsG0280009108.01	PPI
MsG0180004283.01	MsG0280009139.01	PPI
MsG0280009108.01	MsG0180004283.01	PPI

Showing 1 to 6 of 6 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MsG0180004283.01.T01	MTR_1g076430	99.789	473	1	0	1	473	44	516	988
MsG0180004283.01.T01	MTR_1g041085	86.441	472	63	1	1	471	50	521	874
MsG0180004283.01.T01	MTR_2g054940	77.825	469	104	0	1	469	43	511	786
MsG0180004283.01.T01	MTR_4g113280	73.774	469	112	1	1	469	32	489	737
MsG0180004283.01.T01	MTR_7g081695	75.652	460	100	1	1	460	43	490	736
MsG0180004283.01.T01	MTR_4g070270	65.875	463	157	1	1	463	41	502	654
MsG0180004283.01.T01	MTR_7g118170	65.957	470	154	4	1	464	60	529	648
MsG0180004283.01.T01	MTR_1g110930	61.242	467	180	1	3	469	31	496	600
MsG0180004283.01.T01	MTR_5g056510	61.521	447	171	1	23	469	51	496	593
MsG0180004283.01.T01	MTR_6g074880	64.203	433	154	1	34	465	38	470	591

Showing 1 to 10 of 62 entries

Previous1 2 3 4 5 6 7Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MsG0180004283.01.T01	AT2G26640	76.972	469	108	0	1	469	41	509	783
MsG0180004283.01.T01	AT1G04220	76.507	481	104	5	1	473	46	525	774
MsG0180004283.01.T01	AT5G43760	77.371	464	99	3	15	472	66	529	749
MsG0180004283.01.T01	AT1G19440	66.667	459	152	1	3	461	55	512	653
MsG0180004283.01.T01	AT1G01120	63.656	465	166	2	2	463	62	526	652
MsG0180004283.01.T01	AT2G16280	64.488	459	162	1	3	461	51	508	640
MsG0180004283.01.T01	AT4G34510	62.987	462	164	4	3	463	30	485	617
MsG0180004283.01.T01	AT1G68530	59.957	467	186	1	3	469	32	497	600
MsG0180004283.01.T01	AT1G25450	59.062	469	191	1	1	469	25	492	590
MsG0180004283.01.T01	AT2G26250	56.033	489	184	5	1	461	63	548	559

Showing 1 to 10 of 52 entries

Previous1 2 3 4 5 6Next

Find 49 sgRNAs with CRISPR-Local

Find 163 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTTATAAGGACTTGTT+TGG	0.362540	1:-76022535	None:intergenic
AAACTTAAATATGTGAAACT+TGG	0.519226	1:+76022669	MsG0180004283.01.T01:five_prime_UTR
AAATTGAAGTAATTAACTCT+TGG	0.422322	1:-76022558	None:intergenic
AACACTATGTACTAGTCTTA+TGG	0.372563	1:+76022830	MsG0180004283.01.T01:CDS
AAGAAAATACTTGAGAGGTC+TGG	0.464675	1:+76023014	MsG0180004283.01.T01:CDS
AAGTGCTTAATTGTGCTAGA+GGG	0.628631	1:-76022453	None:intergenic
AAGTTATAATCTTGGTGGTA+TGG	0.383403	1:+76023277	MsG0180004283.01.T01:CDS
AATGTTCAAAGTTATAATCT+TGG	0.402519	1:+76023269	MsG0180004283.01.T01:CDS
ACAATCATAGCAGAAAGAGA+AGG	0.652463	1:-76023224	None:intergenic
AGTTATAATCTTGGTGGTAT+GGG	0.463605	1:+76023278	MsG0180004283.01.T01:CDS

Showing 1 to 10 of 49 entries

Previous1 2 3 4 5Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
ACACTTCTAGTAGTTCATTA+TGG	+	Chr1:76024510-76024529	MsG0180004283.01.T01:CDS	30.0%
ACTCTCAAAAGATTTAATGG+CGG	+	Chr1:76024220-76024239	MsG0180004283.01.T01:CDS	30.0%
AGAATGACACTGAATAGATT+TGG	+	Chr1:76024485-76024504	MsG0180004283.01.T01:CDS	30.0%
ATGAATAGGTCTGAATTAAC+AGG	+	Chr1:76022960-76022979	MsG0180004283.01.T01:CDS	30.0%
ATTTCTTCTCATCTTCTTCT+TGG	-	Chr1:76024187-76024206	None:intergenic	30.0%
CAAAAAGTGGTATGAGTAAA+AGG	-	Chr1:76022725-76022744	None:intergenic	30.0%
GAAACAAAATCAAATGAGAG+TGG	-	Chr1:76022499-76022518	None:intergenic	30.0%
GAAGATGAGAAGAAATCAAT+TGG	+	Chr1:76024191-76024210	MsG0180004283.01.T01:CDS	30.0%
GTTCAAAGTTATAATCTTGG+TGG	+	Chr1:76023272-76023291	MsG0180004283.01.T01:CDS	30.0%
TCATGTAACAAATGTTCAAC+TGG	-	Chr1:76024908-76024927	None:intergenic	30.0%

Showing 1 to 10 of 163 entries

Previous1 2 3 4 5…17Next

Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	76022358	76024998	76022358	ID=MsG0180004283.01;Name=MsG0180004283.01
Chr1	mRNA	76022358	76024998	76022358	ID=MsG0180004283.01.T01;Parent=MsG0180004283.01;Name=MsG0180004283.01.T01;_AED=0.15;_eAED=0.15;_QI=332\|1\|1\|1\|0.5\|0.33\|3\|253\|473
Chr1	exon	76022358	76022443	76022358	ID=MsG0180004283.01.T01:exon:44686;Parent=MsG0180004283.01.T01
Chr1	exon	76022471	76023349	76022471	ID=MsG0180004283.01.T01:exon:44687;Parent=MsG0180004283.01.T01
Chr1	five_prime_UTR	76022358	76022443	76022358	ID=MsG0180004283.01.T01:five_prime_utr;Parent=MsG0180004283.01.T01
Chr1	five_prime_UTR	76022471	76022716	76022471	ID=MsG0180004283.01.T01:five_prime_utr;Parent=MsG0180004283.01.T01
Chr1	CDS	76022717	76023349	76022717	ID=MsG0180004283.01.T01:cds;Parent=MsG0180004283.01.T01
Chr1	CDS	76023957	76024745	76023957	ID=MsG0180004283.01.T01:cds;Parent=MsG0180004283.01.T01
Chr1	three_prime_UTR	76024746	76024998	76024746	ID=MsG0180004283.01.T01:three_prime_utr;Parent=MsG0180004283.01.T01
Chr1	mRNA	76022385	76024998	76022385	ID=MsG0180004283.01.T02;Parent=MsG0180004283.01;Name=MsG0180004283.01.T02;_AED=0.15;_eAED=0.15;_QI=332\|1\|1\|1\|1\|1\|2\|253\|473
Chr1	exon	76022385	76023349	76022385	ID=MsG0180004283.01.T02:exon:44689;Parent=MsG0180004283.01.T02
Chr1	five_prime_UTR	76022385	76022716	76022385	ID=MsG0180004283.01.T02:five_prime_utr;Parent=MsG0180004283.01.T02
Chr1	CDS	76022717	76023349	76022717	ID=MsG0180004283.01.T02:cds;Parent=MsG0180004283.01.T02
Chr1	CDS	76023957	76024745	76023957	ID=MsG0180004283.01.T02:cds;Parent=MsG0180004283.01.T02
Chr1	three_prime_UTR	76024746	76024998	76024746	ID=MsG0180004283.01.T02:three_prime_utr;Parent=MsG0180004283.01.T02

Gene Sequence

>MsG0180004283.01.T01

ATGTACCTTTTACTCATACCACTTTTTGGAGCAGCTTCAGCTCATTTATCAACTATATCATACCATGATATTGTTCAACTATATGAAAATCTCAAATTCAATCTTGTATCAGTAACACTATGTACTAGTCTTATGGTATTTCTTGTGACACTTTACTTCATGAGTCGTCCAAGAGGTGTTTACTTGGTTGATTTTGCATGTTACAAACCAAAACAAGAATACACATGTACTAGAGAAATTTTCATGAATAGGTCTGAATTAACAGGTACATTTTCTGATGAAAATTTGGCTTTTCAAAAGAAAATACTTGAGAGGTCTGGTTTAGGTCAAAAGACTTATTTGCCCCCAGCAATATTGAGTGTTCCACCAAATCCTTGTATGGCTGAAGCAAGGAAAGAAGCTGAGGAAGTTATGTTTGGTGCTATTGATGAGCTTTTGGAGAAAACTGGTGTTAAGGCTAAGGATATTGGGATTTTGGTTGTGAATTGTAGTTTGTTTAATCCTACACCTTCTCTTTCTGCTATGATTGTGAATCATTATAAGTTAAGAGGGAATGTTCAAAGTTATAATCTTGGTGGTATGGGTTGTAGTGCTGGACTTATCTCGATTGACCTTGCTAAGCAGCTCCTACAGGTTCATCCAAACTCTTATGCCTTAGTGGTGAGCATGGAGAACATCACACTCAACTGGTATTTTGGCAATGACAGATCAATGTTAGTATCAAATTGTTTGTTTAGAATGGGAGGATCAGCAATTCTCCTCTCCAACAAAGCTTCTGACAGCAAAAGAGCTAAATACCAACTGATCCACACCGTCCGAACACATAAAGGCGCGGACGACAGATCATACGGTTGCGTCTTCCAAGAAGAAGATGAGAAGAAATCAATTGGTGTATCACTCTCAAAAGATTTAATGGCGGTCGCCGGAGAAGCACTCAAAACCAACATCACAACACTTGGTCCATTAGTCCTACCTATGTCAGAACAGCTTCTGTTTTTCGCAACTTTGGTTGCAAGAAAAGCTTTCAAGATGAAGATAAAACCCTACATTCCTGATTTTAAATTAGCTTTTGAGCATTTTTGTATTCATGCTGGTGGAAGAGCTGTTTTGGATGAATTGGAGAAAAATCTTGATCTTAGTGATTGGCATATGGAACCATCAAGAATGACACTGAATAGATTTGGTAACACTTCTAGTAGTTCATTATGGTATGAATTGGCTTATACTGAAGCTAAAGGGAGGATTAGAAAAGGTGATAGGACTTGGCAAATTGCATTTGGTTCTGGATTTAAATGTAATAGTGCTGTGTGGCGTGCATTGAGGACCGTTGATCCAGCTAAGGAGAAAAATCCATGGATGGATGAGATTCATGAGTTTCCTGTTCATGTGCCTAAAGTGGCAACCATTGGTTCATCAAGTTAG

>MsG0180004283.01.T02

Protein sequence

>MsG0180004283.01.T01

MYLLLIPLFGAASAHLSTISYHDIVQLYENLKFNLVSVTLCTSLMVFLVTLYFMSRPRGVYLVDFACYKPKQEYTCTREIFMNRSELTGTFSDENLAFQKKILERSGLGQKTYLPPAILSVPPNPCMAEARKEAEEVMFGAIDELLEKTGVKAKDIGILVVNCSLFNPTPSLSAMIVNHYKLRGNVQSYNLGGMGCSAGLISIDLAKQLLQVHPNSYALVVSMENITLNWYFGNDRSMLVSNCLFRMGGSAILLSNKASDSKRAKYQLIHTVRTHKGADDRSYGCVFQEEDEKKSIGVSLSKDLMAVAGEALKTNITTLGPLVLPMSEQLLFFATLVARKAFKMKIKPYIPDFKLAFEHFCIHAGGRAVLDELEKNLDLSDWHMEPSRMTLNRFGNTSSSSLWYELAYTEAKGRIRKGDRTWQIAFGSGFKCNSAVWRALRTVDPAKEKNPWMDEIHEFPVHVPKVATIGSSS*

>MsG0180004283.01.T02