Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180004283.01.T01 | XP_013468760.1 | 99.789 | 473 | 1 | 0 | 1 | 473 | 44 | 516 | 0 | 988 |
| MsG0180004283.01.T02 | XP_013468760.1 | 99.789 | 473 | 1 | 0 | 1 | 473 | 44 | 516 | 0 | 988 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180004283.01.T01 | O48780 | 76.972 | 469 | 108 | 0 | 1 | 469 | 41 | 509 | 0 | 783 |
| MsG0180004283.01.T02 | O48780 | 76.972 | 469 | 108 | 0 | 1 | 469 | 41 | 509 | 0 | 783 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180004283.01.T01 | A0A072VLT9 | 99.789 | 473 | 1 | 0 | 1 | 473 | 44 | 516 | 0.0 | 988 |
| MsG0180004283.01.T02 | A0A072VLT9 | 99.789 | 473 | 1 | 0 | 1 | 473 | 44 | 516 | 0.0 | 988 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180004168.01 | MsG0180004283.01 | 0.907553 | 4.473929e-81 | 7.975403e-77 |
| MsG0180004283.01 | MsG0180005429.01 | 0.820518 | 6.574716e-53 | 5.213540e-50 |
| MsG0180004283.01 | MsG0380015289.01 | 0.800345 | 1.505646e-48 | 6.994319e-46 |
| MsG0180004283.01 | MsG0580029919.01 | 0.827656 | 1.387125e-54 | 1.347538e-51 |
| MsG0180004283.01 | MsG0780040590.01 | 0.825192 | 5.359119e-54 | 4.850897e-51 |
| MsG0180004283.01 | MsG0780041482.01 | 0.832178 | 1.096047e-55 | 1.215664e-52 |
PPI
| Gene1 | Gene2 | Type |
|---|---|---|
| MsG0180004283.01 | MsG0780041800.01 | PPI |
| MsG0280009108.01 | MsG0180004283.01 | PPI |
| MsG0180004283.01 | MsG0280009139.01 | PPI |
| MsG0180004283.01 | MsG0780041800.01 | PPI |
| MsG0180004283.01 | MsG0280009108.01 | PPI |
| MsG0180004283.01 | MsG0280009139.01 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180004283.01.T01 | MTR_1g076430 | 99.789 | 473 | 1 | 0 | 1 | 473 | 44 | 516 | 0.0 | 988 |
| MsG0180004283.01.T01 | MTR_1g041085 | 86.441 | 472 | 63 | 1 | 1 | 471 | 50 | 521 | 0.0 | 874 |
| MsG0180004283.01.T01 | MTR_2g054940 | 77.825 | 469 | 104 | 0 | 1 | 469 | 43 | 511 | 0.0 | 786 |
| MsG0180004283.01.T01 | MTR_4g113280 | 73.774 | 469 | 112 | 1 | 1 | 469 | 32 | 489 | 0.0 | 737 |
| MsG0180004283.01.T01 | MTR_7g081695 | 75.652 | 460 | 100 | 1 | 1 | 460 | 43 | 490 | 0.0 | 736 |
| MsG0180004283.01.T01 | MTR_4g070270 | 65.875 | 463 | 157 | 1 | 1 | 463 | 41 | 502 | 0.0 | 654 |
| MsG0180004283.01.T01 | MTR_7g118170 | 65.957 | 470 | 154 | 4 | 1 | 464 | 60 | 529 | 0.0 | 648 |
| MsG0180004283.01.T01 | MTR_1g110930 | 61.242 | 467 | 180 | 1 | 3 | 469 | 31 | 496 | 0.0 | 600 |
| MsG0180004283.01.T01 | MTR_5g056510 | 61.521 | 447 | 171 | 1 | 23 | 469 | 51 | 496 | 0.0 | 593 |
| MsG0180004283.01.T01 | MTR_6g074880 | 64.203 | 433 | 154 | 1 | 34 | 465 | 38 | 470 | 0.0 | 591 |
| MsG0180004283.01.T01 | MTR_3g105550 | 57.895 | 475 | 188 | 4 | 1 | 463 | 62 | 536 | 0.0 | 587 |
| MsG0180004283.01.T01 | MTR_4g054630 | 64.037 | 431 | 154 | 1 | 34 | 463 | 36 | 466 | 0.0 | 585 |
| MsG0180004283.01.T01 | MTR_4g054415 | 65.094 | 424 | 146 | 2 | 41 | 463 | 3 | 425 | 0.0 | 581 |
| MsG0180004283.01.T01 | MTR_6g032965 | 64.156 | 385 | 138 | 0 | 80 | 464 | 1 | 385 | 0.0 | 530 |
| MsG0180004283.01.T01 | MTR_7g118160 | 57.284 | 405 | 129 | 4 | 60 | 462 | 56 | 418 | 5.25e-168 | 480 |
| MsG0180004283.01.T01 | MTR_2g013740 | 51.474 | 441 | 205 | 3 | 15 | 455 | 72 | 503 | 6.99e-162 | 468 |
| MsG0180004283.01.T01 | MTR_2g007020 | 51.707 | 410 | 195 | 3 | 56 | 464 | 45 | 452 | 8.26e-153 | 442 |
| MsG0180004283.01.T01 | MTR_2g436480 | 50.235 | 426 | 201 | 5 | 44 | 463 | 31 | 451 | 1.64e-152 | 442 |
| MsG0180004283.01.T01 | MTR_1g102290 | 44.608 | 408 | 225 | 1 | 55 | 461 | 77 | 484 | 1.40e-129 | 384 |
| MsG0180004283.01.T01 | MTR_3g072980 | 44.444 | 414 | 222 | 3 | 52 | 461 | 74 | 483 | 6.23e-123 | 367 |
| MsG0180004283.01.T01 | MTR_3g072940 | 44.444 | 414 | 222 | 3 | 52 | 461 | 74 | 483 | 6.30e-123 | 367 |
| MsG0180004283.01.T01 | MTR_6g051440 | 43.796 | 411 | 223 | 3 | 55 | 461 | 76 | 482 | 1.39e-114 | 346 |
| MsG0180004283.01.T01 | MTR_4g062190 | 40.553 | 434 | 234 | 5 | 45 | 460 | 15 | 442 | 2.43e-110 | 335 |
| MsG0180004283.01.T01 | MTR_4g062270 | 41.232 | 422 | 239 | 4 | 45 | 460 | 15 | 433 | 2.84e-110 | 334 |
| MsG0180004283.01.T01 | MTR_2g096210 | 41.043 | 441 | 234 | 8 | 42 | 462 | 12 | 446 | 1.58e-108 | 330 |
| MsG0180004283.01.T01 | MTR_4g062170 | 41.204 | 432 | 233 | 6 | 45 | 460 | 15 | 441 | 1.21e-107 | 328 |
| MsG0180004283.01.T01 | MTR_1g115560 | 38.532 | 436 | 241 | 5 | 48 | 460 | 20 | 451 | 2.20e-107 | 327 |
| MsG0180004283.01.T01 | MTR_4g054260 | 60.938 | 256 | 82 | 2 | 209 | 463 | 87 | 325 | 3.97e-106 | 319 |
| MsG0180004283.01.T01 | MTR_4g053905 | 68.553 | 159 | 50 | 0 | 305 | 463 | 1 | 159 | 3.16e-76 | 236 |
| MsG0180004283.01.T01 | MTR_4g054265 | 52.586 | 116 | 54 | 1 | 41 | 156 | 3 | 117 | 5.25e-36 | 129 |
| MsG0180004283.01.T01 | MTR_7g086260 | 59.615 | 52 | 21 | 0 | 303 | 354 | 25 | 76 | 9.06e-14 | 67.0 |
| MsG0180004283.01.T02 | MTR_1g076430 | 99.789 | 473 | 1 | 0 | 1 | 473 | 44 | 516 | 0.0 | 988 |
| MsG0180004283.01.T02 | MTR_1g041085 | 86.441 | 472 | 63 | 1 | 1 | 471 | 50 | 521 | 0.0 | 874 |
| MsG0180004283.01.T02 | MTR_2g054940 | 77.825 | 469 | 104 | 0 | 1 | 469 | 43 | 511 | 0.0 | 786 |
| MsG0180004283.01.T02 | MTR_4g113280 | 73.774 | 469 | 112 | 1 | 1 | 469 | 32 | 489 | 0.0 | 737 |
| MsG0180004283.01.T02 | MTR_7g081695 | 75.652 | 460 | 100 | 1 | 1 | 460 | 43 | 490 | 0.0 | 736 |
| MsG0180004283.01.T02 | MTR_4g070270 | 65.875 | 463 | 157 | 1 | 1 | 463 | 41 | 502 | 0.0 | 654 |
| MsG0180004283.01.T02 | MTR_7g118170 | 65.957 | 470 | 154 | 4 | 1 | 464 | 60 | 529 | 0.0 | 648 |
| MsG0180004283.01.T02 | MTR_1g110930 | 61.242 | 467 | 180 | 1 | 3 | 469 | 31 | 496 | 0.0 | 600 |
| MsG0180004283.01.T02 | MTR_5g056510 | 61.521 | 447 | 171 | 1 | 23 | 469 | 51 | 496 | 0.0 | 593 |
| MsG0180004283.01.T02 | MTR_6g074880 | 64.203 | 433 | 154 | 1 | 34 | 465 | 38 | 470 | 0.0 | 591 |
| MsG0180004283.01.T02 | MTR_3g105550 | 57.895 | 475 | 188 | 4 | 1 | 463 | 62 | 536 | 0.0 | 587 |
| MsG0180004283.01.T02 | MTR_4g054630 | 64.037 | 431 | 154 | 1 | 34 | 463 | 36 | 466 | 0.0 | 585 |
| MsG0180004283.01.T02 | MTR_4g054415 | 65.094 | 424 | 146 | 2 | 41 | 463 | 3 | 425 | 0.0 | 581 |
| MsG0180004283.01.T02 | MTR_6g032965 | 64.156 | 385 | 138 | 0 | 80 | 464 | 1 | 385 | 0.0 | 530 |
| MsG0180004283.01.T02 | MTR_7g118160 | 57.284 | 405 | 129 | 4 | 60 | 462 | 56 | 418 | 5.25e-168 | 480 |
| MsG0180004283.01.T02 | MTR_2g013740 | 51.474 | 441 | 205 | 3 | 15 | 455 | 72 | 503 | 6.99e-162 | 468 |
| MsG0180004283.01.T02 | MTR_2g007020 | 51.707 | 410 | 195 | 3 | 56 | 464 | 45 | 452 | 8.26e-153 | 442 |
| MsG0180004283.01.T02 | MTR_2g436480 | 50.235 | 426 | 201 | 5 | 44 | 463 | 31 | 451 | 1.64e-152 | 442 |
| MsG0180004283.01.T02 | MTR_1g102290 | 44.608 | 408 | 225 | 1 | 55 | 461 | 77 | 484 | 1.40e-129 | 384 |
| MsG0180004283.01.T02 | MTR_3g072980 | 44.444 | 414 | 222 | 3 | 52 | 461 | 74 | 483 | 6.23e-123 | 367 |
| MsG0180004283.01.T02 | MTR_3g072940 | 44.444 | 414 | 222 | 3 | 52 | 461 | 74 | 483 | 6.30e-123 | 367 |
| MsG0180004283.01.T02 | MTR_6g051440 | 43.796 | 411 | 223 | 3 | 55 | 461 | 76 | 482 | 1.39e-114 | 346 |
| MsG0180004283.01.T02 | MTR_4g062190 | 40.553 | 434 | 234 | 5 | 45 | 460 | 15 | 442 | 2.43e-110 | 335 |
| MsG0180004283.01.T02 | MTR_4g062270 | 41.232 | 422 | 239 | 4 | 45 | 460 | 15 | 433 | 2.84e-110 | 334 |
| MsG0180004283.01.T02 | MTR_2g096210 | 41.043 | 441 | 234 | 8 | 42 | 462 | 12 | 446 | 1.58e-108 | 330 |
| MsG0180004283.01.T02 | MTR_4g062170 | 41.204 | 432 | 233 | 6 | 45 | 460 | 15 | 441 | 1.21e-107 | 328 |
| MsG0180004283.01.T02 | MTR_1g115560 | 38.532 | 436 | 241 | 5 | 48 | 460 | 20 | 451 | 2.20e-107 | 327 |
| MsG0180004283.01.T02 | MTR_4g054260 | 60.938 | 256 | 82 | 2 | 209 | 463 | 87 | 325 | 3.97e-106 | 319 |
| MsG0180004283.01.T02 | MTR_4g053905 | 68.553 | 159 | 50 | 0 | 305 | 463 | 1 | 159 | 3.16e-76 | 236 |
| MsG0180004283.01.T02 | MTR_4g054265 | 52.586 | 116 | 54 | 1 | 41 | 156 | 3 | 117 | 5.25e-36 | 129 |
| MsG0180004283.01.T02 | MTR_7g086260 | 59.615 | 52 | 21 | 0 | 303 | 354 | 25 | 76 | 9.06e-14 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180004283.01.T01 | AT2G26640 | 76.972 | 469 | 108 | 0 | 1 | 469 | 41 | 509 | 0.0 | 783 |
| MsG0180004283.01.T01 | AT1G04220 | 76.507 | 481 | 104 | 5 | 1 | 473 | 46 | 525 | 0.0 | 774 |
| MsG0180004283.01.T01 | AT5G43760 | 77.371 | 464 | 99 | 3 | 15 | 472 | 66 | 529 | 0.0 | 749 |
| MsG0180004283.01.T01 | AT1G19440 | 66.667 | 459 | 152 | 1 | 3 | 461 | 55 | 512 | 0.0 | 653 |
| MsG0180004283.01.T01 | AT1G01120 | 63.656 | 465 | 166 | 2 | 2 | 463 | 62 | 526 | 0.0 | 652 |
| MsG0180004283.01.T01 | AT2G16280 | 64.488 | 459 | 162 | 1 | 3 | 461 | 51 | 508 | 0.0 | 640 |
| MsG0180004283.01.T01 | AT4G34510 | 62.987 | 462 | 164 | 4 | 3 | 463 | 30 | 485 | 0.0 | 617 |
| MsG0180004283.01.T01 | AT1G68530 | 59.957 | 467 | 186 | 1 | 3 | 469 | 32 | 497 | 0.0 | 600 |
| MsG0180004283.01.T01 | AT1G25450 | 59.062 | 469 | 191 | 1 | 1 | 469 | 25 | 492 | 0.0 | 590 |
| MsG0180004283.01.T01 | AT2G26250 | 56.033 | 489 | 184 | 5 | 1 | 461 | 63 | 548 | 0.0 | 559 |
| MsG0180004283.01.T01 | AT2G15090 | 57.447 | 470 | 190 | 4 | 3 | 463 | 11 | 479 | 0.0 | 550 |
| MsG0180004283.01.T01 | AT4G34250 | 58.030 | 467 | 189 | 3 | 3 | 463 | 22 | 487 | 0.0 | 550 |
| MsG0180004283.01.T01 | AT2G46720 | 56.757 | 444 | 187 | 3 | 23 | 463 | 24 | 465 | 0.0 | 547 |
| MsG0180004283.01.T01 | AT4G34520 | 56.992 | 472 | 191 | 4 | 3 | 463 | 20 | 490 | 0.0 | 538 |
| MsG0180004283.01.T01 | AT3G10280 | 56.941 | 425 | 168 | 4 | 46 | 463 | 42 | 458 | 0.0 | 524 |
| MsG0180004283.01.T01 | AT1G71160 | 48.578 | 422 | 211 | 4 | 41 | 461 | 30 | 446 | 1.94e-150 | 437 |
| MsG0180004283.01.T01 | AT5G49070 | 47.196 | 428 | 222 | 3 | 44 | 469 | 36 | 461 | 7.95e-142 | 415 |
| MsG0180004283.01.T01 | AT3G52160 | 47.044 | 406 | 184 | 2 | 47 | 452 | 75 | 449 | 1.51e-137 | 404 |
| MsG0180004283.01.T01 | AT1G68530 | 56.426 | 319 | 137 | 2 | 3 | 320 | 32 | 349 | 5.84e-129 | 379 |
| MsG0180004283.01.T01 | AT3G52160 | 49.041 | 365 | 155 | 2 | 88 | 452 | 3 | 336 | 1.76e-128 | 376 |
| MsG0180004283.01.T01 | AT2G28630 | 41.647 | 425 | 219 | 7 | 58 | 460 | 29 | 446 | 4.65e-112 | 339 |
| MsG0180004283.01.T01 | AT2G28630 | 41.647 | 425 | 219 | 7 | 58 | 460 | 29 | 446 | 4.65e-112 | 339 |
| MsG0180004283.01.T01 | AT1G07720 | 40.995 | 422 | 231 | 4 | 56 | 460 | 27 | 447 | 1.25e-108 | 330 |
| MsG0180004283.01.T01 | AT1G07720 | 40.995 | 422 | 231 | 4 | 56 | 460 | 70 | 490 | 1.82e-108 | 332 |
| MsG0180004283.01.T01 | AT5G04530 | 38.915 | 424 | 247 | 5 | 46 | 460 | 17 | 437 | 4.64e-107 | 326 |
| MsG0180004283.01.T01 | AT5G49070 | 42.294 | 279 | 160 | 1 | 44 | 322 | 36 | 313 | 1.68e-77 | 245 |
| MsG0180004283.01.T02 | AT2G26640 | 76.972 | 469 | 108 | 0 | 1 | 469 | 41 | 509 | 0.0 | 783 |
| MsG0180004283.01.T02 | AT1G04220 | 76.507 | 481 | 104 | 5 | 1 | 473 | 46 | 525 | 0.0 | 774 |
| MsG0180004283.01.T02 | AT5G43760 | 77.371 | 464 | 99 | 3 | 15 | 472 | 66 | 529 | 0.0 | 749 |
| MsG0180004283.01.T02 | AT1G19440 | 66.667 | 459 | 152 | 1 | 3 | 461 | 55 | 512 | 0.0 | 653 |
| MsG0180004283.01.T02 | AT1G01120 | 63.656 | 465 | 166 | 2 | 2 | 463 | 62 | 526 | 0.0 | 652 |
| MsG0180004283.01.T02 | AT2G16280 | 64.488 | 459 | 162 | 1 | 3 | 461 | 51 | 508 | 0.0 | 640 |
| MsG0180004283.01.T02 | AT4G34510 | 62.987 | 462 | 164 | 4 | 3 | 463 | 30 | 485 | 0.0 | 617 |
| MsG0180004283.01.T02 | AT1G68530 | 59.957 | 467 | 186 | 1 | 3 | 469 | 32 | 497 | 0.0 | 600 |
| MsG0180004283.01.T02 | AT1G25450 | 59.062 | 469 | 191 | 1 | 1 | 469 | 25 | 492 | 0.0 | 590 |
| MsG0180004283.01.T02 | AT2G26250 | 56.033 | 489 | 184 | 5 | 1 | 461 | 63 | 548 | 0.0 | 559 |
| MsG0180004283.01.T02 | AT2G15090 | 57.447 | 470 | 190 | 4 | 3 | 463 | 11 | 479 | 0.0 | 550 |
| MsG0180004283.01.T02 | AT4G34250 | 58.030 | 467 | 189 | 3 | 3 | 463 | 22 | 487 | 0.0 | 550 |
| MsG0180004283.01.T02 | AT2G46720 | 56.757 | 444 | 187 | 3 | 23 | 463 | 24 | 465 | 0.0 | 547 |
| MsG0180004283.01.T02 | AT4G34520 | 56.992 | 472 | 191 | 4 | 3 | 463 | 20 | 490 | 0.0 | 538 |
| MsG0180004283.01.T02 | AT3G10280 | 56.941 | 425 | 168 | 4 | 46 | 463 | 42 | 458 | 0.0 | 524 |
| MsG0180004283.01.T02 | AT1G71160 | 48.578 | 422 | 211 | 4 | 41 | 461 | 30 | 446 | 1.94e-150 | 437 |
| MsG0180004283.01.T02 | AT5G49070 | 47.196 | 428 | 222 | 3 | 44 | 469 | 36 | 461 | 7.95e-142 | 415 |
| MsG0180004283.01.T02 | AT3G52160 | 47.044 | 406 | 184 | 2 | 47 | 452 | 75 | 449 | 1.51e-137 | 404 |
| MsG0180004283.01.T02 | AT1G68530 | 56.426 | 319 | 137 | 2 | 3 | 320 | 32 | 349 | 5.84e-129 | 379 |
| MsG0180004283.01.T02 | AT3G52160 | 49.041 | 365 | 155 | 2 | 88 | 452 | 3 | 336 | 1.76e-128 | 376 |
| MsG0180004283.01.T02 | AT2G28630 | 41.647 | 425 | 219 | 7 | 58 | 460 | 29 | 446 | 4.65e-112 | 339 |
| MsG0180004283.01.T02 | AT2G28630 | 41.647 | 425 | 219 | 7 | 58 | 460 | 29 | 446 | 4.65e-112 | 339 |
| MsG0180004283.01.T02 | AT1G07720 | 40.995 | 422 | 231 | 4 | 56 | 460 | 27 | 447 | 1.25e-108 | 330 |
| MsG0180004283.01.T02 | AT1G07720 | 40.995 | 422 | 231 | 4 | 56 | 460 | 70 | 490 | 1.82e-108 | 332 |
| MsG0180004283.01.T02 | AT5G04530 | 38.915 | 424 | 247 | 5 | 46 | 460 | 17 | 437 | 4.64e-107 | 326 |
| MsG0180004283.01.T02 | AT5G49070 | 42.294 | 279 | 160 | 1 | 44 | 322 | 36 | 313 | 1.68e-77 | 245 |
Find 49 sgRNAs with CRISPR-Local
Find 163 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGCTAAGGATATTGGGATTT+TGG | 0.160476 | 1:+76023172 | MsG0180004283.01.T01:CDS |
| TTCACTGATAGAAGAAAATT+TGG | 0.183181 | 1:-76022648 | None:intergenic |
| TAACTCTTGGAAAATTTATA+AGG | 0.234565 | 1:-76022545 | None:intergenic |
| GTACATGTGTATTCTTGTTT+TGG | 0.247208 | 1:-76022924 | None:intergenic |
| GTGAATCATTATAAGTTAAG+AGG | 0.297927 | 1:+76023245 | MsG0180004283.01.T01:CDS |
| TGGTGCTATTGATGAGCTTT+TGG | 0.331199 | 1:+76023133 | MsG0180004283.01.T01:CDS |
| GTATAACATATGATATGTTT+TGG | 0.336428 | 1:-76022428 | None:intergenic |
| ATGAATAGGTCTGAATTAAC+AGG | 0.348386 | 1:+76022960 | MsG0180004283.01.T01:CDS |
| GCTTCAGCCATACAAGGATT+TGG | 0.353700 | 1:-76023083 | None:intergenic |
| GTGTTAAGGCTAAGGATATT+GGG | 0.356405 | 1:+76023165 | MsG0180004283.01.T01:CDS |
| AAAATTTATAAGGACTTGTT+TGG | 0.362540 | 1:-76022535 | None:intergenic |
| GGTGTTAAGGCTAAGGATAT+TGG | 0.367782 | 1:+76023164 | MsG0180004283.01.T01:CDS |
| AACACTATGTACTAGTCTTA+TGG | 0.372563 | 1:+76022830 | MsG0180004283.01.T01:CDS |
| ATACTTGAGAGGTCTGGTTT+AGG | 0.382514 | 1:+76023020 | MsG0180004283.01.T01:CDS |
| AAGTTATAATCTTGGTGGTA+TGG | 0.383403 | 1:+76023277 | MsG0180004283.01.T01:CDS |
| GGTGGAACACTCAATATTGC+TGG | 0.400152 | 1:-76023062 | None:intergenic |
| AATGTTCAAAGTTATAATCT+TGG | 0.402519 | 1:+76023269 | MsG0180004283.01.T01:CDS |
| GGTGATTCAAAGAAACTGAT+TGG | 0.411792 | 1:-76022606 | None:intergenic |
| AAATTGAAGTAATTAACTCT+TGG | 0.422322 | 1:-76022558 | None:intergenic |
| GGTGGTATGGGTTGTAGTGC+TGG | 0.424592 | 1:+76023290 | MsG0180004283.01.T01:CDS |
| CATATAGTTGAACAATATCA+TGG | 0.436793 | 1:-76022779 | None:intergenic |
| TTTGGAGAAAACTGGTGTTA+AGG | 0.445941 | 1:+76023151 | MsG0180004283.01.T01:CDS |
| GAAGCTGAGGAAGTTATGTT+TGG | 0.456300 | 1:+76023113 | MsG0180004283.01.T01:CDS |
| CCTTGCTAAGCAGCTCCTAC+AGG | 0.458272 | 1:+76023328 | MsG0180004283.01.T01:CDS |
| TACTTCAATTTCAATACTCA+TGG | 0.459172 | 1:+76022570 | MsG0180004283.01.T01:five_prime_UTR |
| TTCCTTGCTTCAGCCATACA+AGG | 0.461441 | 1:-76023089 | None:intergenic |
| AGTTATAATCTTGGTGGTAT+GGG | 0.463605 | 1:+76023278 | MsG0180004283.01.T01:CDS |
| AAGAAAATACTTGAGAGGTC+TGG | 0.464675 | 1:+76023014 | MsG0180004283.01.T01:CDS |
| TCAACCAAGTAAACACCTCT+TGG | 0.467981 | 1:-76022885 | None:intergenic |
| GTGGAACACTCAATATTGCT+GGG | 0.499640 | 1:-76023061 | None:intergenic |
| TCGTCCAAGAGGTGTTTACT+TGG | 0.505159 | 1:+76022881 | MsG0180004283.01.T01:CDS |
| TGAATCATTATAAGTTAAGA+GGG | 0.506304 | 1:+76023246 | MsG0180004283.01.T01:CDS |
| GTTCAAAGTTATAATCTTGG+TGG | 0.515718 | 1:+76023272 | MsG0180004283.01.T01:CDS |
| AAACTTAAATATGTGAAACT+TGG | 0.519226 | 1:+76022669 | MsG0180004283.01.T01:five_prime_UTR |
| GAAAACTGGTGTTAAGGCTA+AGG | 0.522687 | 1:+76023157 | MsG0180004283.01.T01:CDS |
| TGTTCCACCAAATCCTTGTA+TGG | 0.528304 | 1:+76023076 | MsG0180004283.01.T01:CDS |
| TTCAAAAGAAAATACTTGAG+AGG | 0.537603 | 1:+76023009 | MsG0180004283.01.T01:CDS |
| TCAGCCATACAAGGATTTGG+TGG | 0.568816 | 1:-76023080 | None:intergenic |
| CAAGTGCTTAATTGTGCTAG+AGG | 0.580140 | 1:-76022454 | None:intergenic |
| GAAACAAAATCAAATGAGAG+TGG | 0.588416 | 1:-76022496 | None:intergenic |
| ATCCTTGTATGGCTGAAGCA+AGG | 0.595750 | 1:+76023087 | MsG0180004283.01.T01:CDS |
| ATAGCAGAAAGAGAAGGTGT+AGG | 0.612815 | 1:-76023218 | None:intergenic |
| CCTGTAGGAGCTGCTTAGCA+AGG | 0.618822 | 1:-76023328 | None:intergenic |
| TGAAGCAAGGAAAGAAGCTG+AGG | 0.624018 | 1:+76023100 | MsG0180004283.01.T01:CDS |
| AAGTGCTTAATTGTGCTAGA+GGG | 0.628631 | 1:-76022453 | None:intergenic |
| TGGAACACTCAATATTGCTG+GGG | 0.643916 | 1:-76023060 | None:intergenic |
| ACAATCATAGCAGAAAGAGA+AGG | 0.652463 | 1:-76023224 | None:intergenic |
| TACTTCATGAGTCGTCCAAG+AGG | 0.658967 | 1:+76022870 | MsG0180004283.01.T01:CDS |
| GGAACACTCAATATTGCTGG+GGG | 0.681776 | 1:-76023059 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAGTATTATGAATAAAGAA+TGG | - | Chr1:76023395-76023414 | None:intergenic | 15.0% |
| !! | TAATTTCAATGATTTATTCA+TGG | - | Chr1:76023834-76023853 | None:intergenic | 15.0% |
| !!! | AACATTTTTGTTATATGTAT+AGG | + | Chr1:76023935-76023954 | MsG0180004283.01.T01:intron | 15.0% |
| !! | AAACTTAAATATGTGAAACT+TGG | + | Chr1:76022669-76022688 | MsG0180004283.01.T01:five_prime_UTR | 20.0% |
| !! | AAATTGAAGTAATTAACTCT+TGG | - | Chr1:76022561-76022580 | None:intergenic | 20.0% |
| !! | AATCTTTACAATTACAACTA+AGG | + | Chr1:76023806-76023825 | MsG0180004283.01.T01:intron | 20.0% |
| !! | AATGTTCAAAGTTATAATCT+TGG | + | Chr1:76023269-76023288 | MsG0180004283.01.T01:CDS | 20.0% |
| !! | ATCAAATTGTTTGTTTAGAA+TGG | + | Chr1:76024043-76024062 | MsG0180004283.01.T01:CDS | 20.0% |
| !! | ATCTTTACAATTACAACTAA+GGG | + | Chr1:76023807-76023826 | MsG0180004283.01.T01:intron | 20.0% |
| !! | TAACTCTTGGAAAATTTATA+AGG | - | Chr1:76022548-76022567 | None:intergenic | 20.0% |
| !! | TAGTTGTAATTGTAAAGATT+TGG | - | Chr1:76023806-76023825 | None:intergenic | 20.0% |
| !! | TCCACATTTAATTAATCTTT+AGG | + | Chr1:76024776-76024795 | MsG0180004283.01.T01:three_prime_UTR | 20.0% |
| !! | TCCTAAAGATTAATTAAATG+TGG | - | Chr1:76024780-76024799 | None:intergenic | 20.0% |
| !! | TGAATCATTATAAGTTAAGA+GGG | + | Chr1:76023246-76023265 | MsG0180004283.01.T01:CDS | 20.0% |
| !! | TTGAATGTGATGAAAAAATA+TGG | - | Chr1:76022373-76022392 | None:intergenic | 20.0% |
| !!! | AAAATTTATAAGGACTTGTT+TGG | - | Chr1:76022538-76022557 | None:intergenic | 20.0% |
| !!! | AATACTATTGTTTAACTTCA+TGG | + | Chr1:76023407-76023426 | MsG0180004283.01.T01:intron | 20.0% |
| !!! | AATTTAAAATCAGGAATGTA+GGG | - | Chr1:76024368-76024387 | None:intergenic | 20.0% |
| !!! | ATTGTTTTGCTATAATAACA+TGG | - | Chr1:76023909-76023928 | None:intergenic | 20.0% |
| !!! | CTATAATAACATGGTATTTT+TGG | - | Chr1:76023900-76023919 | None:intergenic | 20.0% |
| !!! | GTATAACATATGATATGTTT+TGG | - | Chr1:76022431-76022450 | None:intergenic | 20.0% |
| !!! | TAATTTAAAATCAGGAATGT+AGG | - | Chr1:76024369-76024388 | None:intergenic | 20.0% |
| !!! | TACATTTTCTGATGAAAATT+TGG | + | Chr1:76022983-76023002 | MsG0180004283.01.T01:CDS | 20.0% |
| !!! | TCAAAAGCTAATTTAAAATC+AGG | - | Chr1:76024377-76024396 | None:intergenic | 20.0% |
| !!! | TCAAATTGTTTGTTTAGAAT+GGG | + | Chr1:76024044-76024063 | MsG0180004283.01.T01:CDS | 20.0% |
| !!! | TTCAAATTATAGCTTTAAGT+TGG | + | Chr1:76023511-76023530 | MsG0180004283.01.T01:intron | 20.0% |
| !!! | TTCAAGTTAGAACAAAATTA+GGG | + | Chr1:76023482-76023501 | MsG0180004283.01.T01:intron | 20.0% |
| ! | AAAATCTTGATCTTAGTGAT+TGG | + | Chr1:76024447-76024466 | MsG0180004283.01.T01:CDS | 25.0% |
| ! | AAAATGTAGACCAAAAAAGA+AGG | - | Chr1:76022398-76022417 | None:intergenic | 25.0% |
| ! | ACCAAAAGTAAATTAAGTAC+TGG | + | Chr1:76023622-76023641 | MsG0180004283.01.T01:intron | 25.0% |
| ! | ATCACTCTCAAAAGATTTAA+TGG | + | Chr1:76024217-76024236 | MsG0180004283.01.T01:CDS | 25.0% |
| ! | CATATAGTTGAACAATATCA+TGG | - | Chr1:76022782-76022801 | None:intergenic | 25.0% |
| ! | GTGAATCATTATAAGTTAAG+AGG | + | Chr1:76023245-76023264 | MsG0180004283.01.T01:CDS | 25.0% |
| ! | TACTTCAATTTCAATACTCA+TGG | + | Chr1:76022570-76022589 | MsG0180004283.01.T01:five_prime_UTR | 25.0% |
| ! | TAGTTCATTATGGTATGAAT+TGG | + | Chr1:76024520-76024539 | MsG0180004283.01.T01:CDS | 25.0% |
| ! | TCAAGTTAGAACAAAATTAG+GGG | + | Chr1:76023483-76023502 | MsG0180004283.01.T01:intron | 25.0% |
| ! | TGATGAAAAAATATGGAAGA+TGG | - | Chr1:76022366-76022385 | None:intergenic | 25.0% |
| ! | TTCAAAAGAAAATACTTGAG+AGG | + | Chr1:76023009-76023028 | MsG0180004283.01.T01:CDS | 25.0% |
| ! | TTCACTGATAGAAGAAAATT+TGG | - | Chr1:76022651-76022670 | None:intergenic | 25.0% |
| ! | TTGTAAAGATTTGGACAATT+TGG | - | Chr1:76023797-76023816 | None:intergenic | 25.0% |
| !! | ACCAGTACTTAATTTACTTT+TGG | - | Chr1:76023626-76023645 | None:intergenic | 25.0% |
| !! | ATTATTGACTATAGTTTGGT+TGG | - | Chr1:76023773-76023792 | None:intergenic | 25.0% |
| !! | CTAGAGAAATTTTCATGAAT+AGG | + | Chr1:76022946-76022965 | MsG0180004283.01.T01:CDS | 25.0% |
| !! | CTTCAAGTTAGAACAAAATT+AGG | + | Chr1:76023481-76023500 | MsG0180004283.01.T01:intron | 25.0% |
| !! | GTTAGGAAGAAATTTGTTTA+AGG | + | Chr1:76024741-76024760 | MsG0180004283.01.T01:intron | 25.0% |
| !! | TCATAGTACACATTTTATGA+AGG | - | Chr1:76024948-76024967 | None:intergenic | 25.0% |
| !! | TGGTATTATTGACTATAGTT+TGG | - | Chr1:76023777-76023796 | None:intergenic | 25.0% |
| !! | TTATTGACTATAGTTTGGTT+GGG | - | Chr1:76023772-76023791 | None:intergenic | 25.0% |
| !!! | ACATTCAATTCCTTCTTTTT+TGG | + | Chr1:76022385-76022404 | MsG0180004283.01.T01:five_prime_UTR | 25.0% |
| !!! | TAGCTTTTGAGATTAAGTAA+TGG | - | Chr1:76022698-76022717 | None:intergenic | 25.0% |
| ACACTTCTAGTAGTTCATTA+TGG | + | Chr1:76024510-76024529 | MsG0180004283.01.T01:CDS | 30.0% | |
| ACTCTCAAAAGATTTAATGG+CGG | + | Chr1:76024220-76024239 | MsG0180004283.01.T01:CDS | 30.0% | |
| AGAATGACACTGAATAGATT+TGG | + | Chr1:76024485-76024504 | MsG0180004283.01.T01:CDS | 30.0% | |
| ATGAATAGGTCTGAATTAAC+AGG | + | Chr1:76022960-76022979 | MsG0180004283.01.T01:CDS | 30.0% | |
| ATTTCTTCTCATCTTCTTCT+TGG | - | Chr1:76024187-76024206 | None:intergenic | 30.0% | |
| CAAAAAGTGGTATGAGTAAA+AGG | - | Chr1:76022725-76022744 | None:intergenic | 30.0% | |
| GAAACAAAATCAAATGAGAG+TGG | - | Chr1:76022499-76022518 | None:intergenic | 30.0% | |
| GAAGATGAGAAGAAATCAAT+TGG | + | Chr1:76024191-76024210 | MsG0180004283.01.T01:CDS | 30.0% | |
| GTTCAAAGTTATAATCTTGG+TGG | + | Chr1:76023272-76023291 | MsG0180004283.01.T01:CDS | 30.0% | |
| TCATGTAACAAATGTTCAAC+TGG | - | Chr1:76024908-76024927 | None:intergenic | 30.0% | |
| TGTTATAACTGCAAGTAACA+TGG | - | Chr1:76023717-76023736 | None:intergenic | 30.0% | |
| TTAAATGTAATAGTGCTGTG+TGG | + | Chr1:76024612-76024631 | MsG0180004283.01.T01:CDS | 30.0% | |
| ! | AAGTTATAATCTTGGTGGTA+TGG | + | Chr1:76023277-76023296 | MsG0180004283.01.T01:CDS | 30.0% |
| ! | AATTGTTTGTTTAGAATGGG+AGG | + | Chr1:76024047-76024066 | MsG0180004283.01.T01:CDS | 30.0% |
| ! | AGTTATAATCTTGGTGGTAT+GGG | + | Chr1:76023278-76023297 | MsG0180004283.01.T01:CDS | 30.0% |
| ! | TATTGACTATAGTTTGGTTG+GGG | - | Chr1:76023771-76023790 | None:intergenic | 30.0% |
| !! | AACACTATGTACTAGTCTTA+TGG | + | Chr1:76022830-76022849 | MsG0180004283.01.T01:CDS | 30.0% |
| !! | CTTTTACTCATACCACTTTT+TGG | + | Chr1:76022723-76022742 | MsG0180004283.01.T01:CDS | 30.0% |
| !! | GTACATGTGTATTCTTGTTT+TGG | - | Chr1:76022927-76022946 | None:intergenic | 30.0% |
| !! | GTTTAACTTCATGGTCATTT+TGG | + | Chr1:76023416-76023435 | MsG0180004283.01.T01:intron | 30.0% |
| AAAACCAACATCACAACACT+TGG | + | Chr1:76024260-76024279 | MsG0180004283.01.T01:CDS | 35.0% | |
| AAGAAAATACTTGAGAGGTC+TGG | + | Chr1:76023014-76023033 | MsG0180004283.01.T01:CDS | 35.0% | |
| AAGTGCTTAATTGTGCTAGA+GGG | - | Chr1:76022456-76022475 | None:intergenic | 35.0% | |
| ACAATCATAGCAGAAAGAGA+AGG | - | Chr1:76023227-76023246 | None:intergenic | 35.0% | |
| GGTGATTCAAAGAAACTGAT+TGG | - | Chr1:76022609-76022628 | None:intergenic | 35.0% | |
| GTGTTAAGGCTAAGGATATT+GGG | + | Chr1:76023165-76023184 | MsG0180004283.01.T01:CDS | 35.0% | |
| TAAGGAGAAAAATCCATGGA+TGG | + | Chr1:76024661-76024680 | MsG0180004283.01.T01:CDS | 35.0% | |
| TGATCTTAGTGATTGGCATA+TGG | + | Chr1:76024454-76024473 | MsG0180004283.01.T01:CDS | 35.0% | |
| TGGCTTATACTGAAGCTAAA+GGG | + | Chr1:76024540-76024559 | MsG0180004283.01.T01:CDS | 35.0% | |
| TTAGAAAAGGTGATAGGACT+TGG | + | Chr1:76024567-76024586 | MsG0180004283.01.T01:CDS | 35.0% | |
| TTCCTAACTTGATGAACCAA+TGG | - | Chr1:76024729-76024748 | None:intergenic | 35.0% | |
| TTGGCTTATACTGAAGCTAA+AGG | + | Chr1:76024539-76024558 | MsG0180004283.01.T01:CDS | 35.0% | |
| TTGGGGCAGTGTATTAAATA+GGG | - | Chr1:76023754-76023773 | None:intergenic | 35.0% | |
| ! | ATCACACTCAACTGGTATTT+TGG | + | Chr1:76023999-76024018 | MsG0180004283.01.T01:CDS | 35.0% |
| ! | CATTTTTGTATTCATGCTGG+TGG | + | Chr1:76024398-76024417 | MsG0180004283.01.T01:CDS | 35.0% |
| ! | CTATTCAGTGTCATTCTTGA+TGG | - | Chr1:76024482-76024501 | None:intergenic | 35.0% |
| ! | GAGCATTTTTGTATTCATGC+TGG | + | Chr1:76024395-76024414 | MsG0180004283.01.T01:CDS | 35.0% |
| ! | GGAAGTTTTCTTCTTTCTTG+AGG | - | Chr1:76022630-76022649 | None:intergenic | 35.0% |
| ! | TTTGGAGAAAACTGGTGTTA+AGG | + | Chr1:76023151-76023170 | MsG0180004283.01.T01:CDS | 35.0% |
| !! | AACCATTGGTTCATCAAGTT+AGG | + | Chr1:76024724-76024743 | MsG0180004283.01.T01:CDS | 35.0% |
| !! | AAGAGCTGTTTTGGATGAAT+TGG | + | Chr1:76024421-76024440 | MsG0180004283.01.T01:CDS | 35.0% |
| AACAGAAGCTGTTCTGACAT+AGG | - | Chr1:76024299-76024318 | None:intergenic | 40.0% | |
| AATCTGTACATGTGTGTGTG+TGG | - | Chr1:76023692-76023711 | None:intergenic | 40.0% | |
| ACCACTAAGGCATAAGAGTT+TGG | - | Chr1:76023966-76023985 | None:intergenic | 40.0% | |
| AGGACTTGGCAAATTGCATT+TGG | + | Chr1:76024581-76024600 | MsG0180004283.01.T01:CDS | 40.0% | |
| CAAGTGCTTAATTGTGCTAG+AGG | - | Chr1:76022457-76022476 | None:intergenic | 40.0% | |
| CAGCTAAGGAGAAAAATCCA+TGG | + | Chr1:76024657-76024676 | MsG0180004283.01.T01:CDS | 40.0% | |
| CTTATACTGAAGCTAAAGGG+AGG | + | Chr1:76024543-76024562 | MsG0180004283.01.T01:CDS | 40.0% | |
| GAAGCTGAGGAAGTTATGTT+TGG | + | Chr1:76023113-76023132 | MsG0180004283.01.T01:CDS | 40.0% | |
| GCTAAAGGGAGGATTAGAAA+AGG | + | Chr1:76024554-76024573 | MsG0180004283.01.T01:CDS | 40.0% | |
| GCTTCAAGAAACTTCTCTCA+TGG | - | Chr1:76023649-76023668 | None:intergenic | 40.0% | |
| GGAGGATTAGAAAAGGTGAT+AGG | + | Chr1:76024561-76024580 | MsG0180004283.01.T01:CDS | 40.0% | |
| GGTGTTAAGGCTAAGGATAT+TGG | + | Chr1:76023164-76023183 | MsG0180004283.01.T01:CDS | 40.0% | |
| GTGGAACACTCAATATTGCT+GGG | - | Chr1:76023064-76023083 | None:intergenic | 40.0% | |
| GTTGGGGCAGTGTATTAAAT+AGG | - | Chr1:76023755-76023774 | None:intergenic | 40.0% | |
| TCAACCAAGTAAACACCTCT+TGG | - | Chr1:76022888-76022907 | None:intergenic | 40.0% | |
| TCATGAATCTCATCCATCCA+TGG | - | Chr1:76024677-76024696 | None:intergenic | 40.0% | |
| TCCAAACTCTTATGCCTTAG+TGG | + | Chr1:76023962-76023981 | MsG0180004283.01.T01:CDS | 40.0% | |
| TCTGACATAGGTAGGACTAA+TGG | - | Chr1:76024287-76024306 | None:intergenic | 40.0% | |
| TGGAACACTCAATATTGCTG+GGG | - | Chr1:76023063-76023082 | None:intergenic | 40.0% | |
| TGTTCCACCAAATCCTTGTA+TGG | + | Chr1:76023076-76023095 | MsG0180004283.01.T01:CDS | 40.0% | |
| TTTCTCCTTAGCTGGATCAA+CGG | - | Chr1:76024651-76024670 | None:intergenic | 40.0% | |
| ! | ATACTTGAGAGGTCTGGTTT+AGG | + | Chr1:76023020-76023039 | MsG0180004283.01.T01:CDS | 40.0% |
| ! | ATAGCAGAAAGAGAAGGTGT+AGG | - | Chr1:76023221-76023240 | None:intergenic | 40.0% |
| ! | CATGGATTTTTCTCCTTAGC+TGG | - | Chr1:76024659-76024678 | None:intergenic | 40.0% |
| ! | GAAAACTGGTGTTAAGGCTA+AGG | + | Chr1:76023157-76023176 | MsG0180004283.01.T01:CDS | 40.0% |
| ! | GGCTAAGGATATTGGGATTT+TGG | + | Chr1:76023172-76023191 | MsG0180004283.01.T01:CDS | 40.0% |
| ! | TGGCAAATTGCATTTGGTTC+TGG | + | Chr1:76024587-76024606 | MsG0180004283.01.T01:CDS | 40.0% |
| ! | TTTGCTGTCAGAAGCTTTGT+TGG | - | Chr1:76024090-76024109 | None:intergenic | 40.0% |
| !! | GATGAGCTTTTGGAGAAAAC+TGG | + | Chr1:76023143-76023162 | MsG0180004283.01.T01:CDS | 40.0% |
| !! | GCTTCTGTTTTTCGCAACTT+TGG | + | Chr1:76024310-76024329 | MsG0180004283.01.T01:CDS | 40.0% |
| !!! | TGGTGCTATTGATGAGCTTT+TGG | + | Chr1:76023133-76023152 | MsG0180004283.01.T01:CDS | 40.0% |
| AAAGATTTAATGGCGGTCGC+CGG | + | Chr1:76024227-76024246 | MsG0180004283.01.T01:CDS | 45.0% | |
| ATCCTTGTATGGCTGAAGCA+AGG | + | Chr1:76023087-76023106 | MsG0180004283.01.T01:CDS | 45.0% | |
| ATGCATGCAAACCAACCTGT+AGG | - | Chr1:76023346-76023365 | None:intergenic | 45.0% | |
| ATGTGTGTGTGTGGACAACT+GGG | - | Chr1:76023683-76023702 | None:intergenic | 45.0% | |
| GAAGCTGTTCTGACATAGGT+AGG | - | Chr1:76024295-76024314 | None:intergenic | 45.0% | |
| GCTTCAGCCATACAAGGATT+TGG | - | Chr1:76023086-76023105 | None:intergenic | 45.0% | |
| GGAACACTCAATATTGCTGG+GGG | - | Chr1:76023062-76023081 | None:intergenic | 45.0% | |
| GGGCAGTGTATTAAATAGGG+TGG | - | Chr1:76023751-76023770 | None:intergenic | 45.0% | |
| GGTGGAACACTCAATATTGC+TGG | - | Chr1:76023065-76023084 | None:intergenic | 45.0% | |
| TACTTCATGAGTCGTCCAAG+AGG | + | Chr1:76022870-76022889 | MsG0180004283.01.T01:CDS | 45.0% | |
| TCAGCCATACAAGGATTTGG+TGG | - | Chr1:76023083-76023102 | None:intergenic | 45.0% | |
| TCCTGTTCATGTGCCTAAAG+TGG | + | Chr1:76024700-76024719 | MsG0180004283.01.T01:CDS | 45.0% | |
| TGAAGCAAGGAAAGAAGCTG+AGG | + | Chr1:76023100-76023119 | MsG0180004283.01.T01:CDS | 45.0% | |
| TGGAGAACATCACACTCAAC+TGG | + | Chr1:76023991-76024010 | MsG0180004283.01.T01:CDS | 45.0% | |
| TTATGCCTTAGTGGTGAGCA+TGG | + | Chr1:76023971-76023990 | MsG0180004283.01.T01:CDS | 45.0% | |
| TTCCTTGCTTCAGCCATACA+AGG | - | Chr1:76023092-76023111 | None:intergenic | 45.0% | |
| ! | TGGACCAAGTGTTGTGATGT+TGG | - | Chr1:76024267-76024286 | None:intergenic | 45.0% |
| !! | GAACCAATGGTTGCCACTTT+AGG | - | Chr1:76024716-76024735 | None:intergenic | 45.0% |
| !! | TCGTCCAAGAGGTGTTTACT+TGG | + | Chr1:76022881-76022900 | MsG0180004283.01.T01:CDS | 45.0% |
| !! | TGTCAGAAGCTTTGTTGGAG+AGG | - | Chr1:76024085-76024104 | None:intergenic | 45.0% |
| !!! | GTTGGTTTTGAGTGCTTCTC+CGG | - | Chr1:76024249-76024268 | None:intergenic | 45.0% |
| CACACCGTCCGAACACATAA+AGG | + | Chr1:76024131-76024150 | MsG0180004283.01.T01:CDS | 50.0% | |
| CATGTGTGTGTGTGGACAAC+TGG | - | Chr1:76023684-76023703 | None:intergenic | 50.0% | |
| CTTTATGTGTTCGGACGGTG+TGG | - | Chr1:76024133-76024152 | None:intergenic | 50.0% | |
| GCTGAAGCTGCTCCAAAAAG+TGG | - | Chr1:76022738-76022757 | None:intergenic | 50.0% | |
| GTGCCTAAAGTGGCAACCAT+TGG | + | Chr1:76024710-76024729 | MsG0180004283.01.T01:CDS | 50.0% | |
| GTTCTCCATGCTCACCACTA+AGG | - | Chr1:76023979-76023998 | None:intergenic | 50.0% | |
| TGTGTGTGTGTGGACAACTG+GGG | - | Chr1:76023682-76023701 | None:intergenic | 50.0% | |
| ! | GCCACTTTAGGCACATGAAC+AGG | - | Chr1:76024704-76024723 | None:intergenic | 50.0% |
| ! | TGCTGGTGGAAGAGCTGTTT+TGG | + | Chr1:76024412-76024431 | MsG0180004283.01.T01:CDS | 50.0% |
| CCTGTAGGAGCTGCTTAGCA+AGG | - | Chr1:76023331-76023350 | None:intergenic | 55.0% | |
| CCTTGCTAAGCAGCTCCTAC+AGG | + | Chr1:76023328-76023347 | MsG0180004283.01.T01:CDS | 55.0% | |
| CGCGCCTTTATGTGTTCGGA+CGG | - | Chr1:76024138-76024157 | None:intergenic | 55.0% | |
| CGTCCGAACACATAAAGGCG+CGG | + | Chr1:76024136-76024155 | MsG0180004283.01.T01:CDS | 55.0% | |
| CGTCCGCGCCTTTATGTGTT+CGG | - | Chr1:76024142-76024161 | None:intergenic | 55.0% | |
| GAGGACCGTTGATCCAGCTA+AGG | + | Chr1:76024643-76024662 | MsG0180004283.01.T01:CDS | 55.0% | |
| GCTAAGCAGCTCCTACAGGT+TGG | + | Chr1:76023332-76023351 | MsG0180004283.01.T01:intron | 55.0% | |
| TTCGGACGGTGTGGATCAGT+TGG | - | Chr1:76024124-76024143 | None:intergenic | 55.0% | |
| ! | GGTGGTATGGGTTGTAGTGC+TGG | + | Chr1:76023290-76023309 | MsG0180004283.01.T01:CDS | 55.0% |
| GGCGCGGACGACAGATCATA+CGG | + | Chr1:76024152-76024171 | MsG0180004283.01.T01:CDS | 60.0% | |
| GTGCTGTGTGGCGTGCATTG+AGG | + | Chr1:76024624-76024643 | MsG0180004283.01.T01:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr1 | gene | 76022358 | 76024998 | 76022358 | ID=MsG0180004283.01;Name=MsG0180004283.01 |
| Chr1 | mRNA | 76022358 | 76024998 | 76022358 | ID=MsG0180004283.01.T01;Parent=MsG0180004283.01;Name=MsG0180004283.01.T01;_AED=0.15;_eAED=0.15;_QI=332|1|1|1|0.5|0.33|3|253|473 |
| Chr1 | exon | 76022358 | 76022443 | 76022358 | ID=MsG0180004283.01.T01:exon:44686;Parent=MsG0180004283.01.T01 |
| Chr1 | exon | 76022471 | 76023349 | 76022471 | ID=MsG0180004283.01.T01:exon:44687;Parent=MsG0180004283.01.T01 |
| Chr1 | five_prime_UTR | 76022358 | 76022443 | 76022358 | ID=MsG0180004283.01.T01:five_prime_utr;Parent=MsG0180004283.01.T01 |
| Chr1 | five_prime_UTR | 76022471 | 76022716 | 76022471 | ID=MsG0180004283.01.T01:five_prime_utr;Parent=MsG0180004283.01.T01 |
| Chr1 | CDS | 76022717 | 76023349 | 76022717 | ID=MsG0180004283.01.T01:cds;Parent=MsG0180004283.01.T01 |
| Chr1 | CDS | 76023957 | 76024745 | 76023957 | ID=MsG0180004283.01.T01:cds;Parent=MsG0180004283.01.T01 |
| Chr1 | three_prime_UTR | 76024746 | 76024998 | 76024746 | ID=MsG0180004283.01.T01:three_prime_utr;Parent=MsG0180004283.01.T01 |
| Chr1 | mRNA | 76022385 | 76024998 | 76022385 | ID=MsG0180004283.01.T02;Parent=MsG0180004283.01;Name=MsG0180004283.01.T02;_AED=0.15;_eAED=0.15;_QI=332|1|1|1|1|1|2|253|473 |
| Chr1 | exon | 76022385 | 76023349 | 76022385 | ID=MsG0180004283.01.T02:exon:44689;Parent=MsG0180004283.01.T02 |
| Chr1 | five_prime_UTR | 76022385 | 76022716 | 76022385 | ID=MsG0180004283.01.T02:five_prime_utr;Parent=MsG0180004283.01.T02 |
| Chr1 | CDS | 76022717 | 76023349 | 76022717 | ID=MsG0180004283.01.T02:cds;Parent=MsG0180004283.01.T02 |
| Chr1 | CDS | 76023957 | 76024745 | 76023957 | ID=MsG0180004283.01.T02:cds;Parent=MsG0180004283.01.T02 |
| Chr1 | three_prime_UTR | 76024746 | 76024998 | 76024746 | ID=MsG0180004283.01.T02:three_prime_utr;Parent=MsG0180004283.01.T02 |
| Gene Sequence |
| Protein sequence |
