AlfalfaGEDB | MsG0180004296.01

M. sativa cultivar ZhongmuNo.1 / MsG0180004296.01

KEGG: K13448
GO: GO:0005509
PFAM: PF00036 PF13499

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180004296.01.T01	XP_013468780.1	69.333	150	7	1	1	111	1	150	6.13E-59	188

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180004296.01.T01	O23320	57.534	146	23	1	4	110	5	150	1.59E-48	154

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180004296.01.T01	A0A072VLW5	69.333	150	7	1	1	111	1	150	2.93e-59	188

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0180003240.01	MsG0180004296.01	0.817164	3.800229e-52	2.746835e-49
MsG0180004181.01	MsG0180004296.01	0.902549	8.654283e-79	1.232181e-74
MsG0180004203.01	MsG0180004296.01	0.812177	4.833123e-51	3.051483e-48
MsG0180004296.01	MsG0380011613.01	0.821831	3.275882e-53	2.694898e-50
MsG0180004296.01	MsG0480018807.01	0.827329	1.661693e-54	1.599285e-51
MsG0180004296.01	MsG0480023349.01	0.810194	1.301004e-50	7.791768e-48
MsG0180004296.01	MsG0780039968.01	0.814879	1.230261e-51	8.353405e-49
MsG0180004296.01	MsG0880042810.01	0.803510	3.368939e-49	1.696151e-46

Showing 1 to 8 of 8 entries

Previous1Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180004296.01.T01	MTR_1g076650	69.333	150	7	1	1	111	1	150	7.42e-63	188
MsG0180004296.01.T01	MTR_1g041285	58.389	149	23	1	1	110	1	149	1.17e-51	160
MsG0180004296.01.T01	MTR_5g088320	52.027	148	32	1	1	109	1	148	6.56e-46	145
MsG0180004296.01.T01	MTR_6g025320	51.351	148	33	1	1	109	1	148	2.81e-45	144
MsG0180004296.01.T01	MTR_7g087610	51.351	148	33	1	1	109	1	148	7.04e-45	142
MsG0180004296.01.T01	MTR_0168s0120	64.130	92	30	1	21	109	21	112	1.58e-37	123
MsG0180004296.01.T01	MTR_6g025320	64.130	92	30	1	21	109	21	112	1.58e-37	123
MsG0180004296.01.T01	MTR_1g071150	45.890	146	41	2	1	108	1	146	3.72e-35	118
MsG0180004296.01.T01	MTR_7g115040	43.624	149	45	2	1	110	1	149	6.56e-32	110
MsG0180004296.01.T01	MTR_1g032070	51.648	91	41	1	21	108	91	181	6.60e-22	85.9

Showing 1 to 10 of 76 entries

Previous1 2 3 4 5…8Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180004296.01.T01	AT4G14640	57.534	146	23	1	4	110	5	150	1.62e-49	154
MsG0180004296.01.T01	AT3G22930	57.343	143	22	1	5	108	28	170	9.91e-49	153
MsG0180004296.01.T01	AT5G37780	52.703	148	31	1	1	109	1	148	1.83e-46	147
MsG0180004296.01.T01	AT1G66410	52.703	148	31	1	1	109	1	148	1.83e-46	147
MsG0180004296.01.T01	AT2G27030	52.000	150	33	1	1	111	1	150	4.80e-46	147
MsG0180004296.01.T01	AT3G56800	52.027	148	32	1	1	109	1	148	1.10e-45	144
MsG0180004296.01.T01	AT2G27030	52.027	148	32	1	1	109	1	148	1.10e-45	144
MsG0180004296.01.T01	AT2G41110	52.027	148	32	1	1	109	1	148	1.10e-45	144
MsG0180004296.01.T01	AT5G21274	52.027	148	32	1	1	109	1	148	1.34e-45	144
MsG0180004296.01.T01	AT3G43810	51.351	148	33	1	1	109	1	148	2.94e-45	144

Showing 1 to 10 of 100 entries

Previous1 2 3 4 5…10Next

Find 19 sgRNAs with CRISPR-Local

Find 68 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGAATTAGCCACTGTTATC+AGG	0.375137	1:+76231469	MsG0180004296.01.T01:CDS
ACAAATTGTTGATTTCAAAG+AGG	0.544777	1:+76231290	MsG0180004296.01.T01:CDS
AGACACGTGATGATCAATCT+AGG	0.540494	1:+76232532	MsG0180004296.01.T01:CDS
ATCCAATGACCTGATAACAG+TGG	0.720716	1:-76231478	None:intergenic
ATCTTTGTCAAACAAACTAA+AGG	0.531026	1:-76231313	None:intergenic
ATTAAAGAAGCAGATATGGA+TGG	0.602493	1:+76232589	MsG0180004296.01.T01:CDS
CAACAATTTGTTCTTCACTA+AGG	0.446590	1:-76231278	None:intergenic
CATTTAGGACACTGATGCAG+AGG	0.570696	1:+76231769	MsG0180004296.01.T01:intron
GAAGCAGATATGGATGGTGA+TGG	0.608277	1:+76232595	MsG0180004296.01.T01:CDS
GATGATTAAAGAAGCAGATA+TGG	0.394958	1:+76232585	MsG0180004296.01.T01:CDS

Showing 1 to 10 of 19 entries

Previous1 2Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
ACAAGATATATACGTGGAAA+AGG	-	Chr1:76232430-76232449	None:intergenic	30.0%
AGTGATGAGAATTCTGTTAA+AGG	-	Chr1:76231360-76231379	None:intergenic	30.0%
ATTAAAGAAGCAGATATGGA+TGG	+	Chr1:76232589-76232608	MsG0180004296.01.T01:CDS	30.0%
CAAGAACTCATCAAATTCAA+TGG	-	Chr1:76231568-76231587	None:intergenic	30.0%
CAATAACCAAAGACTAAGTT+TGG	+	Chr1:76231729-76231748	MsG0180004296.01.T01:intron	30.0%
GACAATGCATAATATATGCA+AGG	-	Chr1:76231978-76231997	None:intergenic	30.0%
GATGATTAAAGAAGCAGATA+TGG	+	Chr1:76232585-76232604	MsG0180004296.01.T01:CDS	30.0%
GTCTTTGACAAAGATCAAAA+TGG	+	Chr1:76231815-76231834	MsG0180004296.01.T01:CDS	30.0%
TGAAAAACTAAGTGATGAAG+AGG	+	Chr1:76232555-76232574	MsG0180004296.01.T01:CDS	30.0%
TTGGATAGTGAAATATACGA+TGG	+	Chr1:76232478-76232497	MsG0180004296.01.T01:intron	30.0%

Showing 1 to 10 of 68 entries

Previous1 2 3 4 5 6 7Next

Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	76231267	76232666	76231267	ID=MsG0180004296.01;Name=MsG0180004296.01
Chr1	mRNA	76231267	76232666	76231267	ID=MsG0180004296.01.T01;Parent=MsG0180004296.01;Name=MsG0180004296.01.T01;_AED=0.42;_eAED=0.46;_QI=0\|0\|0\|1\|0.33\|0.5\|4\|0\|111
Chr1	exon	76231267	76231342	76231267	ID=MsG0180004296.01.T01:exon:12592;Parent=MsG0180004296.01.T01
Chr1	exon	76231450	76231490	76231450	ID=MsG0180004296.01.T01:exon:12593;Parent=MsG0180004296.01.T01
Chr1	exon	76231776	76231856	76231776	ID=MsG0180004296.01.T01:exon:12594;Parent=MsG0180004296.01.T01
Chr1	exon	76232529	76232666	76232529	ID=MsG0180004296.01.T01:exon:12595;Parent=MsG0180004296.01.T01
Chr1	CDS	76231267	76231342	76231267	ID=MsG0180004296.01.T01:cds;Parent=MsG0180004296.01.T01
Chr1	CDS	76231450	76231490	76231450	ID=MsG0180004296.01.T01:cds;Parent=MsG0180004296.01.T01
Chr1	CDS	76231776	76231856	76231776	ID=MsG0180004296.01.T01:cds;Parent=MsG0180004296.01.T01
Chr1	CDS	76232529	76232666	76232529	ID=MsG0180004296.01.T01:cds;Parent=MsG0180004296.01.T01

Gene Sequence	>MsG0180004296.01.T01 ATGGCACATGTCCTTAGTGAAGAACAAATTGTTGATTTCAAAGAGGCCTTTAGTTTGTTTGACAAAGATGGAGATGGTTGCATTACTGTGGAAGAAAGAATTAGCCACTGTTATCAGGACACTGATGCAGAGGAGGAGCTTAGAGAGGCTTTCAAGGTCTTTGACAAAGATCAAAATGGCTATATATCAGCCAGTGAGTTGAGACACGTGATGATCAATCTAGGTGAAAAACTAAGTGATGAAGAGGTAGAGCAGATGATTAAAGAAGCAGATATGGATGGTGATGGTCAAGTTGACTTTGATGAATTCGTCAAGATGATGATGACCATTCGATGA
Protein sequence	>MsG0180004296.01.T01 MAHVLSEEQIVDFKEAFSLFDKDGDGCITVEERISHCYQDTDAEEELREAFKVFDKDQNGYISASELRHVMINLGEKLSDEEVEQMIKEADMDGDGQVDFDEFVKMMMTIR*