AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180004203.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004203.01.T01 MTR_1g077030 99.612 258 1 0 1 258 1 258 0.0 539
MsG0180004203.01.T01 MTR_6g064960 73.485 264 67 3 1 262 1 263 6.93e-143 409
MsG0180004203.01.T01 MTR_1g077020 95.812 191 8 0 267 457 1 191 9.50e-134 383
MsG0180004203.01.T01 MTR_6g036660 64.674 184 34 2 76 258 9 162 9.73e-75 232
MsG0180004203.01.T01 MTR_4g134580 42.194 237 81 5 274 454 112 348 3.67e-54 185
MsG0180004203.01.T01 MTR_5g032600 46.040 202 81 5 273 452 76 271 7.65e-51 174
MsG0180004203.01.T01 MTR_3g100650 46.970 198 87 3 272 452 77 273 7.33e-50 171
MsG0180004203.01.T01 MTR_5g020510 42.079 202 92 5 275 454 99 297 5.98e-46 161
MsG0180004203.01.T01 MTR_5g065440 42.254 213 89 5 273 452 56 267 7.99e-44 155
MsG0180004203.01.T01 MTR_7g010300 43.284 201 91 5 272 452 85 282 1.29e-40 148
MsG0180004203.01.T01 MTR_6g012280 38.739 222 64 6 275 452 91 284 4.25e-37 139
MsG0180004203.01.T01 MTR_2g076780 39.320 206 91 8 275 452 37 236 8.70e-37 135
MsG0180004203.01.T01 MTR_8g069080 38.000 200 103 3 274 452 68 267 8.81e-37 136
MsG0180004203.01.T01 MTR_6g073013 35.593 177 76 5 275 448 19 160 1.00e-30 117
MsG0180004203.01.T01 MTR_8g467340 63.492 63 23 0 390 452 271 333 1.02e-19 91.3
MsG0180004203.01.T01 MTR_8g467340 66.667 57 15 2 271 324 60 115 2.71e-17 84.0
MsG0180004203.01.T01 MTR_3g039810 58.929 56 23 0 273 328 18 73 1.40e-18 80.5
MsG0180004203.01.T01 MTR_6g012220 60.000 55 18 1 269 323 15 65 2.34e-16 74.3
MsG0180004203.01.T01 MTR_8g069380 52.381 63 30 0 390 452 52 114 7.43e-16 73.9
MsG0180004203.01.T01 MTR_8g442330 30.345 145 81 2 284 427 14 139 1.57e-15 73.9
MsG0180004203.01.T01 MTR_8g051480 53.226 62 28 1 391 452 68 128 1.91e-13 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004203.01.T01 AT4G15093 64.314 255 87 3 3 253 4 258 4.40e-121 354
MsG0180004203.01.T01 AT1G14440 49.495 198 87 4 269 453 84 281 1.70e-56 190
MsG0180004203.01.T01 AT1G14440 49.495 198 87 4 269 453 84 281 1.70e-56 190
MsG0180004203.01.T01 AT2G02540 48.095 210 89 5 268 457 80 289 5.63e-55 186
MsG0180004203.01.T01 AT2G02540 48.095 210 89 5 268 457 80 289 5.63e-55 186
MsG0180004203.01.T01 AT4G24660 47.778 180 87 2 273 452 47 219 1.55e-50 171
MsG0180004203.01.T01 AT4G24660 48.023 177 85 2 273 449 47 216 1.80e-49 169
MsG0180004203.01.T01 AT5G65410 44.134 179 99 1 274 451 74 252 1.87e-45 159
MsG0180004203.01.T01 AT1G69600 43.077 195 91 5 267 446 23 212 3.39e-43 152
MsG0180004203.01.T01 AT2G18350 44.086 186 97 4 273 454 80 262 3.86e-43 153
MsG0180004203.01.T01 AT5G60480 45.109 184 84 6 269 446 31 203 6.02e-41 146
MsG0180004203.01.T01 AT3G50890 41.624 197 97 4 273 457 58 248 1.57e-39 143
MsG0180004203.01.T01 AT5G15210 44.615 195 84 6 268 446 49 235 6.91e-39 142
MsG0180004203.01.T01 AT3G28920 40.654 214 78 5 273 449 50 251 5.37e-37 138
MsG0180004203.01.T01 AT5G42780 37.566 189 110 5 262 447 53 236 2.23e-26 107
MsG0180004203.01.T01 AT1G75240 70.175 57 17 0 270 326 71 127 4.43e-23 99.8
MsG0180004203.01.T01 AT1G75240 59.677 62 25 0 390 451 240 301 2.96e-18 85.9
MsG0180004203.01.T01 AT1G74660 62.500 56 21 0 273 328 37 92 1.44e-21 89.4
MsG0180004203.01.T01 AT1G74660 62.500 56 21 0 273 328 37 92 5.36e-21 88.2
MsG0180004203.01.T01 AT3G28917 61.538 65 20 2 273 332 31 95 7.76e-21 87.4
MsG0180004203.01.T01 AT5G39760 57.576 66 28 0 390 455 200 265 4.90e-19 88.6
MsG0180004203.01.T01 AT5G39760 55.556 63 26 1 271 331 52 114 1.07e-14 75.5
MsG0180004203.01.T01 AT1G18835 62.500 56 18 1 273 328 24 76 5.09e-19 82.0
MsG0180004203.01.T01 AT1G14687 29.944 177 106 6 275 449 7 167 1.55e-17 80.5

Find 108 sgRNAs with CRISPR-Local

Find 306 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGGCTCTGGCATTTGATTCC+TGG 0.223358 1:-74816752 MsG0180004203.01.T01:CDS
TAACATTAATGCACCTTTCT+TGG 0.224192 1:-74813476 MsG0180004203.01.T01:CDS
CGCTTCAATATTCTACATTA+AGG 0.243705 1:-74817939 MsG0180004203.01.T01:five_prime_UTR
TTCTTGTTATCTCTGGTCAT+TGG 0.280377 1:-74817741 MsG0180004203.01.T01:CDS
TGCAGGAATTGTTTCATCTA+TGG 0.287643 1:+74817816 None:intergenic
CTTCCCATTGCATGTGGCTA+TGG 0.326906 1:-74816411 MsG0180004203.01.T01:CDS
CCCTCCTCCTCCCTGGGCTC+TGG 0.327725 1:-74816766 MsG0180004203.01.T01:CDS
TCTTGTTATCTCTGGTCATT+GGG 0.336206 1:-74817740 MsG0180004203.01.T01:CDS
TTCACCCTCTTTGCTAACTT+TGG 0.341100 1:+74817050 None:intergenic
TCATGAGAAAGATTGTATTA+AGG 0.341971 1:-74813398 MsG0180004203.01.T01:CDS
AACTTTGGAGCCCCTGGTGC+TGG 0.357532 1:+74817065 None:intergenic
ATTGTGATTAACAACGTTAA+CGG 0.372671 1:+74817702 None:intergenic
CATGTTATGAGTGGCACTTC+CGG 0.373240 1:+74816812 None:intergenic
GAGAAAGCCCTCCTCCTCCC+TGG 0.379390 1:-74816773 MsG0180004203.01.T01:CDS
GATGAGGGTGTTCTAATAAT+CGG 0.388648 1:-74816837 MsG0180004203.01.T01:CDS
TTTGCTAACTTTGGAGCCCC+TGG 0.388909 1:+74817059 None:intergenic
AAGGAACTGATCGAAGCATC+TGG 0.408387 1:-74817029 MsG0180004203.01.T01:CDS
GCCAGAGCCCAGGGAGGAGG+AGG 0.408526 1:+74816765 None:intergenic
AATGAAACCATCCATGATTT+CGG 0.409867 1:-74817682 MsG0180004203.01.T01:CDS
TCTGCCATTCTTGTTATCTC+TGG 0.410290 1:-74817748 MsG0180004203.01.T01:CDS
TATACCAGTATGTCAACTTT+CGG 0.414509 1:-74816922 MsG0180004203.01.T01:CDS
TCGGTTTCATCAAATAGAAA+TGG 0.415828 1:-74816903 MsG0180004203.01.T01:CDS
AGAACACCCTCATCTTTAAG+AGG 0.426483 1:+74816846 None:intergenic
TTCCCATTGCATGTGGCTAT+GGG 0.428707 1:-74816410 MsG0180004203.01.T01:CDS
GGTACTTACCATTATAACTT+AGG 0.430513 1:-74816882 MsG0180004203.01.T01:CDS
GATGTTGTGCTTTGCAGAAA+AGG 0.435319 1:-74813299 MsG0180004203.01.T01:CDS
GGATGAGCCACTTTCGCATA+TGG 0.439113 1:+74816449 None:intergenic
CATGGAAATTCTTGACATCA+TGG 0.450298 1:-74817795 MsG0180004203.01.T01:CDS
CAAGGTTATTCATGAGAGTT+GGG 0.452153 1:-74816363 MsG0180004203.01.T01:CDS
ATGATTTCGGTGGCTTTCCT+AGG 0.454213 1:-74817669 MsG0180004203.01.T01:CDS
ACTCATAACATGAGAGCAAT+TGG 0.455156 1:-74816801 MsG0180004203.01.T01:CDS
CCAAGGTTATTCATGAGAGT+TGG 0.456924 1:-74816364 MsG0180004203.01.T01:CDS
GCTTGTAGAAAGATTTCTCT+TGG 0.457726 1:+74813162 None:intergenic
ATTCATGAGAGTTGGGATAG+TGG 0.458572 1:-74816356 MsG0180004203.01.T01:CDS
AAGAACCATGCAGCTACAAT+TGG 0.462343 1:-74813673 MsG0180004203.01.T01:CDS
TGATTAACAACGTTAACGGT+TGG 0.472085 1:+74817706 None:intergenic
TAGGAAAGCCACCGAAATCA+TGG 0.473235 1:+74817671 None:intergenic
TATTATGCATCCACACTTTG+AGG 0.473414 1:+74813200 None:intergenic
CTTTCCTAGGAGCATGTACA+AGG 0.474154 1:-74817656 MsG0180004203.01.T01:intron
GAAACCGAAAGTTGACATAC+TGG 0.474557 1:+74816918 None:intergenic
TGCAATGGGAAGAAATGATC+AGG 0.474579 1:+74816422 None:intergenic
AGAAAGCCCTCCTCCTCCCT+GGG 0.482352 1:-74816772 MsG0180004203.01.T01:CDS
ATTGGTGGCAATGCAATTGA+TGG 0.483673 1:-74813655 MsG0180004203.01.T01:CDS
TTATCTCCTAACAACAAAAG+TGG 0.483711 1:-74813448 MsG0180004203.01.T01:CDS
CAGCTCAAGTATCCAGCACC+AGG 0.488701 1:-74817077 MsG0180004203.01.T01:CDS
GGAATCAAATGCCAGAGCCC+AGG 0.488956 1:+74816755 None:intergenic
GGTGCATTAATGTTATGATC+AGG 0.492826 1:+74813484 None:intergenic
CAAACCTTGTACATGCTCCT+AGG 0.492861 1:+74817652 None:intergenic
CTCCCATAGCCACATGCAAT+GGG 0.493902 1:+74816408 None:intergenic
AATGCCAGAGCCCAGGGAGG+AGG 0.498803 1:+74816762 None:intergenic
GAAAGATTGTATTAAGGATG+TGG 0.506741 1:-74813392 MsG0180004203.01.T01:CDS
AGAATGGCAGATGGTCTCTC+AGG 0.511823 1:+74817760 None:intergenic
GCTCCCATAGCCACATGCAA+TGG 0.521180 1:+74816407 None:intergenic
TAAGTTCAGTAAAGAACAGA+AGG 0.524622 1:-74813326 MsG0180004203.01.T01:CDS
AACCATGCAGCTACAATTGG+TGG 0.533193 1:-74813670 MsG0180004203.01.T01:CDS
CATGTGGCTATGGGAGCTGC+TGG 0.535183 1:-74816401 MsG0180004203.01.T01:CDS
CATACTGGTATATCAGCCTC+TGG 0.544796 1:+74816933 None:intergenic
GGCTCCAAAGTTAGCAAAGA+GGG 0.544809 1:-74817054 MsG0180004203.01.T01:CDS
GGAGATAAATGAGCCAAGAA+AGG 0.551764 1:+74813463 None:intergenic
GGTGTTCTAATAATCGGATC+CGG 0.552606 1:-74816831 MsG0180004203.01.T01:CDS
CCAACTCTCATGAATAACCT+TGG 0.556818 1:+74816364 None:intergenic
AAGAATCTCTCGTCGAAGGA+AGG 0.559361 1:-74816725 MsG0180004203.01.T01:intron
TCATTTCTTCCCATTGCATG+TGG 0.560813 1:-74816417 MsG0180004203.01.T01:CDS
ATTCTTGACATCATGGAAAG+AGG 0.565403 1:-74817788 MsG0180004203.01.T01:CDS
AGAGCAGCATAATGTTGAGA+AGG 0.566633 1:+74813517 None:intergenic
AAAAGATGATAGTTAAGAAG+AGG 0.567751 1:-74813357 MsG0180004203.01.T01:CDS
GAAGGCGCCATATGCGAAAG+TGG 0.568307 1:-74816456 MsG0180004203.01.T01:CDS
ATGACCAGAGATAACAAGAA+TGG 0.569073 1:+74817744 None:intergenic
GTTTCATCTATGGCTAGTGT+TGG 0.573056 1:+74817826 None:intergenic
ATGCGAAAGTGGCTCATCCA+TGG 0.576625 1:-74816445 MsG0180004203.01.T01:CDS
TGCCACCAATTGTAGCTGCA+TGG 0.577086 1:+74813668 None:intergenic
GGAGGAGGAGGGCTTTCTCG+AGG 0.577926 1:+74816777 None:intergenic
AGCATCTGGGTTGAGTCGAG+TGG 0.579096 1:-74817015 MsG0180004203.01.T01:CDS
AATAGCTCCTCTTAAAGATG+AGG 0.581989 1:-74816853 MsG0180004203.01.T01:CDS
GATGTCAAGAATTTCCATGC+AGG 0.582906 1:+74817799 None:intergenic
AGCTGCTGTGAAACCAAAAG+AGG 0.584042 1:+74816319 None:intergenic
GAATCAAATGCCAGAGCCCA+GGG 0.587952 1:+74816756 None:intergenic
TCATGATAAGACTGATCAGA+AGG 0.590901 1:+74813415 None:intergenic
TGGTGAGAATTCAAAGGCCA+AGG 0.591154 1:-74816381 MsG0180004203.01.T01:CDS
GGGAAGAAATGATCAGGCCA+TGG 0.597088 1:+74816428 None:intergenic
CATAAATCACTACGAAGAGA+AGG 0.601560 1:-74816474 MsG0180004203.01.T01:CDS
GGCAATGCAATTGATGGATG+TGG 0.602522 1:-74813649 MsG0180004203.01.T01:CDS
CCAGAGCCCAGGGAGGAGGA+GGG 0.604544 1:+74816766 None:intergenic
AGGAACTGATCGAAGCATCT+GGG 0.606798 1:-74817028 MsG0180004203.01.T01:CDS
AAAGTTAGCAAAGAGGGTGA+AGG 0.608328 1:-74817048 MsG0180004203.01.T01:CDS
TTAAAAGAATCTCTCGTCGA+AGG 0.612211 1:-74816729 MsG0180004203.01.T01:CDS
AGAGAAGAATCCTCAAAGTG+TGG 0.619701 1:-74813210 MsG0180004203.01.T01:CDS
GAAACCATCCATGATTTCGG+TGG 0.621697 1:-74817679 MsG0180004203.01.T01:CDS
GAGCAGCATAATGTTGAGAA+GGG 0.623819 1:+74813518 None:intergenic
ATAGCTCCTCTTAAAGATGA+GGG 0.624747 1:-74816852 MsG0180004203.01.T01:CDS
TAGATGAAACAATTCCTGCA+TGG 0.625784 1:-74817813 MsG0180004203.01.T01:CDS
AGCTGCTGGTGAGAATTCAA+AGG 0.626345 1:-74816387 MsG0180004203.01.T01:CDS
TTGCAGAAAAGGCTGAGTGG+AGG 0.634235 1:-74813288 MsG0180004203.01.T01:CDS
TGCTCAATGTTCCAGATACG+AGG 0.635008 1:-74816498 MsG0180004203.01.T01:intron
GTGGGCTTGATCATGGAACA+TGG 0.640571 1:-74816977 MsG0180004203.01.T01:CDS
TCAGAAGCTAGATGAATCTG+TGG 0.653987 1:-74813263 MsG0180004203.01.T01:CDS
GCTCAAGTATCCAGCACCAG+GGG 0.654006 1:-74817075 MsG0180004203.01.T01:CDS
AAAGCCACCGAAATCATGGA+TGG 0.655429 1:+74817675 None:intergenic
AGCTCAAGTATCCAGCACCA+GGG 0.658115 1:-74817076 MsG0180004203.01.T01:CDS
GAGATAACAAGAATGGCAGA+TGG 0.658261 1:+74817751 None:intergenic
AATTGCTCTCATGTTATGAG+TGG 0.665609 1:+74816803 None:intergenic
TCTCATGTTGATGTATCCAG+AGG 0.674561 1:-74816949 MsG0180004203.01.T01:CDS
TCTGGATACATCAACATGAG+AGG 0.675165 1:+74816951 None:intergenic
GGGCTCCAAAGTTAGCAAAG+AGG 0.677936 1:-74817055 MsG0180004203.01.T01:CDS
TGTGGTGAGTTCATGCCAAG+TGG 0.691258 1:-74813631 MsG0180004203.01.T01:CDS
GCTTTGCAGAAAAGGCTGAG+TGG 0.707295 1:-74813291 MsG0180004203.01.T01:CDS
TGGGCTTGATCATGGAACAT+GGG 0.724784 1:-74816976 MsG0180004203.01.T01:CDS
TCAAATGCCAGAGCCCAGGG+AGG 0.758664 1:+74816759 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATACATTAATCTAATATAAA+TGG + Chr1:74816117-74816136 None:intergenic 10.0%
!!! GTTTAGAATAAATTAATAAA+AGG + Chr1:74816945-74816964 None:intergenic 10.0%
!!! TATTTTGAAAGATATTTTAT+AGG + Chr1:74816188-74816207 None:intergenic 10.0%
!! AAGATTATTATTCAAAATCA+GGG + Chr1:74815099-74815118 None:intergenic 15.0%
!! AGATAGATATAAAACAAAAA+TGG + Chr1:74813984-74814003 None:intergenic 15.0%
!! ATAAATCATAGTATTTGTTT+AGG - Chr1:74816051-74816070 MsG0180004203.01.T01:intron 15.0%
!! ATAAGCACATATTATTAATA+GGG - Chr1:74815268-74815287 MsG0180004203.01.T01:intron 15.0%
!! ATTCAATATTATACAGTAAT+GGG - Chr1:74816135-74816154 MsG0180004203.01.T01:intron 15.0%
!! GGTTGTAATAATATTAAATA+TGG - Chr1:74815822-74815841 MsG0180004203.01.T01:intron 15.0%
!! TATTCAATATTATACAGTAA+TGG - Chr1:74816134-74816153 MsG0180004203.01.T01:intron 15.0%
!!! TTCAAGTTGATAATAAATAA+TGG - Chr1:74815645-74815664 MsG0180004203.01.T01:intron 15.0%
!! AATCTAATATAAATGGACAT+GGG + Chr1:74816110-74816129 None:intergenic 20.0%
!! AGTTCAAAACTAAAACTATA+CGG + Chr1:74816479-74816498 None:intergenic 20.0%
!! ATCTTTCAAAATAACAAGTT+TGG - Chr1:74816195-74816214 MsG0180004203.01.T01:intron 20.0%
!! CAAGATTTATTCCATTAAAT+GGG + Chr1:74813623-74813642 None:intergenic 20.0%
!! CATAAGCACATATTATTAAT+AGG - Chr1:74815267-74815286 MsG0180004203.01.T01:intron 20.0%
!! GAAGATTATTATTCAAAATC+AGG + Chr1:74815100-74815119 None:intergenic 20.0%
!! GTAAACCAAATAAAAAGAAA+AGG + Chr1:74816713-74816732 None:intergenic 20.0%
!! GTTCTTATCTTATTATTGTT+TGG - Chr1:74816915-74816934 MsG0180004203.01.T01:CDS 20.0%
!! TAATCTAATATAAATGGACA+TGG + Chr1:74816111-74816130 None:intergenic 20.0%
!! TAGAAATCAACTAAGAATTT+AGG + Chr1:74815226-74815245 None:intergenic 20.0%
!! TCATCTCTATATATAATAGA+AGG - Chr1:74817278-74817297 MsG0180004203.01.T01:intron 20.0%
!! TCTATTATATATAGAGATGA+TGG + Chr1:74817278-74817297 None:intergenic 20.0%
!! TTAATGAGGAAATGAAAATT+TGG + Chr1:74817253-74817272 None:intergenic 20.0%
!! TTACATAAAATACAGTAGAA+CGG + Chr1:74814831-74814850 None:intergenic 20.0%
!! TTCAATATTATACAGTAATG+GGG - Chr1:74816136-74816155 MsG0180004203.01.T01:intron 20.0%
!! TTTCCAATATCCAATTTATT+TGG + Chr1:74815491-74815510 None:intergenic 20.0%
!!! AAGCAAAAGTATACAAAAAA+TGG - Chr1:74813220-74813239 MsG0180004203.01.T01:CDS 20.0%
!!! ACTAAACTGTATTATACTTT+TGG - Chr1:74816731-74816750 MsG0180004203.01.T01:CDS 20.0%
!!! ACTTCATAGATTTTCAATTT+TGG - Chr1:74815681-74815700 MsG0180004203.01.T01:intron 20.0%
!!! CATACATGTATTTTTAGATT+AGG + Chr1:74814885-74814904 None:intergenic 20.0%
!!! CTTCATAGATTTTCAATTTT+GGG - Chr1:74815682-74815701 MsG0180004203.01.T01:intron 20.0%
!!! GCTACAATTTCTTAATTTTT+CGG + Chr1:74813683-74813702 None:intergenic 20.0%
!!! TATAGTTTTAGTTTTGAACT+GGG - Chr1:74816479-74816498 MsG0180004203.01.T01:CDS 20.0%
!!! TCACTTTTTTTCTTGTATTT+TGG + Chr1:74813193-74813212 None:intergenic 20.0%
!!! TTTGAAAGATATTTTATAGG+AGG + Chr1:74816185-74816204 None:intergenic 20.0%
! AAAAGATGATAGTTAAGAAG+AGG - Chr1:74817747-74817766 MsG0180004203.01.T01:CDS 25.0%
! AAGAAATTGTAGCAATAGAT+TGG - Chr1:74813690-74813709 MsG0180004203.01.T01:CDS 25.0%
! AAGCTGACAAAGAATATTTA+TGG + Chr1:74816889-74816908 None:intergenic 25.0%
! AATTGATTGATTAGGAGTAA+AGG - Chr1:74816080-74816099 MsG0180004203.01.T01:intron 25.0%
! AGATACACAATTCTTGTATT+TGG + Chr1:74815067-74815086 None:intergenic 25.0%
! AGTGTTCCTAATTATGTATA+TGG - Chr1:74815360-74815379 MsG0180004203.01.T01:intron 25.0%
! ATAATTGACACTTATGCTTA+GGG - Chr1:74815787-74815806 MsG0180004203.01.T01:intron 25.0%
! ATATGATTATGAAGTTCTCA+AGG + Chr1:74815445-74815464 None:intergenic 25.0%
! ATATGCATACATTACACATT+AGG - Chr1:74813745-74813764 MsG0180004203.01.T01:intron 25.0%
! ATGAATAATCTCTAGACATA+TGG - Chr1:74816529-74816548 MsG0180004203.01.T01:intron 25.0%
! ATTACATCTTGAAATTTGAG+CGG - Chr1:74813549-74813568 MsG0180004203.01.T01:CDS 25.0%
! ATTGATTGATTAGGAGTAAA+GGG - Chr1:74816081-74816100 MsG0180004203.01.T01:intron 25.0%
! ATTGTGATTAACAACGTTAA+CGG + Chr1:74813405-74813424 None:intergenic 25.0%
! CCAAGATTTATTCCATTAAA+TGG + Chr1:74813624-74813643 None:intergenic 25.0%
! CCATTTAATGGAATAAATCT+TGG - Chr1:74813621-74813640 MsG0180004203.01.T01:CDS 25.0%
! GATATTTCAGTGTTAACAAA+AGG + Chr1:74815301-74815320 None:intergenic 25.0%
! GGAATCTGAATTAAACAATT+AGG + Chr1:74813828-74813847 None:intergenic 25.0%
! TAAACTCTAAGCTTGAATAA+TGG - Chr1:74816368-74816387 MsG0180004203.01.T01:CDS 25.0%
! TAAGCATAAGTGTCAATTAT+AGG + Chr1:74815787-74815806 None:intergenic 25.0%
! TAGAGATTATTCATTGTTGT+TGG + Chr1:74816523-74816542 None:intergenic 25.0%
! TATAATTGACACTTATGCTT+AGG - Chr1:74815786-74815805 MsG0180004203.01.T01:intron 25.0%
! TATGCCTCATAGTTTATTAT+CGG - Chr1:74816266-74816285 MsG0180004203.01.T01:intron 25.0%
! TCATGAGAAAGATTGTATTA+AGG - Chr1:74817706-74817725 MsG0180004203.01.T01:CDS 25.0%
! TTGAGAACTTCATAATCATA+TGG - Chr1:74815444-74815463 MsG0180004203.01.T01:intron 25.0%
! TTTATTCCATTAAATGGGAT+CGG + Chr1:74813618-74813637 None:intergenic 25.0%
!! ATCAACTAAGAATTTAGGTT+AGG + Chr1:74815221-74815240 None:intergenic 25.0%
!! CTTCTTAACTATCATCTTTT+CGG + Chr1:74817747-74817766 None:intergenic 25.0%
!! TATACAAAAAATGGCATTGA+AGG - Chr1:74813229-74813248 MsG0180004203.01.T01:CDS 25.0%
!! TGTAAGAACACTTTTGTAAA+TGG + Chr1:74815035-74815054 None:intergenic 25.0%
!!! ATAGTTTTAGTTTTGAACTG+GGG - Chr1:74816480-74816499 MsG0180004203.01.T01:CDS 25.0%
!!! GTATAGTTTTAGTTTTGAAC+TGG - Chr1:74816478-74816497 MsG0180004203.01.T01:CDS 25.0%
!!! TTGCTTTTCCTAAGTTATAA+TGG + Chr1:74814233-74814252 None:intergenic 25.0%
AAAACAAAAATGGACCATTG+TGG + Chr1:74813974-74813993 None:intergenic 30.0%
AATAAAAAGAAAAGGCAACC+CGG + Chr1:74816705-74816724 None:intergenic 30.0%
AATAAATAATGGCCTAATGC+AGG - Chr1:74815656-74815675 MsG0180004203.01.T01:intron 30.0%
AATGAAACCATCCATGATTT+CGG - Chr1:74813422-74813441 MsG0180004203.01.T01:CDS 30.0%
ATCATTGGAGCCAAATAAAT+TGG - Chr1:74815478-74815497 MsG0180004203.01.T01:intron 30.0%
CGCTTCAATATTCTACATTA+AGG - Chr1:74813165-74813184 MsG0180004203.01.T01:CDS 30.0%
CTATTGAATCATAACTGATC+CGG - Chr1:74813788-74813807 MsG0180004203.01.T01:intron 30.0%
CTTACCGATAATAAACTATG+AGG + Chr1:74816273-74816292 None:intergenic 30.0%
GAAAGATTGTATTAAGGATG+TGG - Chr1:74817712-74817731 MsG0180004203.01.T01:CDS 30.0%
GAGCCAAATAAATTGGATAT+TGG - Chr1:74815485-74815504 MsG0180004203.01.T01:intron 30.0%
GATTGGATAAACAAACATTG+AGG - Chr1:74813707-74813726 MsG0180004203.01.T01:CDS 30.0%
GGAACACAAATTGATTGATT+AGG - Chr1:74816072-74816091 MsG0180004203.01.T01:intron 30.0%
GGTACTTACCATTATAACTT+AGG - Chr1:74814222-74814241 MsG0180004203.01.T01:intron 30.0%
GGTGCAATTAATAAAAACTC+AGG + Chr1:74814910-74814929 None:intergenic 30.0%
TAACATTAATGCACCTTTCT+TGG - Chr1:74817628-74817647 MsG0180004203.01.T01:intron 30.0%
TAAGTTCAGTAAAGAACAGA+AGG - Chr1:74817778-74817797 MsG0180004203.01.T01:CDS 30.0%
TAATTGACACTTATGCTTAG+GGG - Chr1:74815788-74815807 MsG0180004203.01.T01:intron 30.0%
TAGCTCTTCAATTGATACTT+AGG + Chr1:74813921-74813940 None:intergenic 30.0%
TATACCAGTATGTCAACTTT+CGG - Chr1:74814182-74814201 MsG0180004203.01.T01:intron 30.0%
TATTGAATCATAACTGATCC+GGG - Chr1:74813789-74813808 MsG0180004203.01.T01:intron 30.0%
TCGGTTTCATCAAATAGAAA+TGG - Chr1:74814201-74814220 MsG0180004203.01.T01:intron 30.0%
TGAACTTATCAGATTCAGTT+AGG + Chr1:74815629-74815648 None:intergenic 30.0%
TGAGGAAATGAAAATTTGGA+TGG + Chr1:74817249-74817268 None:intergenic 30.0%
TTAATTCAGATTCCGAACTT+TGG - Chr1:74813834-74813853 MsG0180004203.01.T01:intron 30.0%
TTATCTCCTAACAACAAAAG+TGG - Chr1:74817656-74817675 MsG0180004203.01.T01:intron 30.0%
! AAGAAGATCAAGATTTTGTG+TGG + Chr1:74815386-74815405 None:intergenic 30.0%
! ACGGTCTTTTGTGTAAAAAA+CGG - Chr1:74816607-74816626 MsG0180004203.01.T01:intron 30.0%
! AGATTATTCATTGTTGTTGG+CGG + Chr1:74816520-74816539 None:intergenic 30.0%
! CTTATGAAAAGATGTCCTTT+TGG - Chr1:74816224-74816243 MsG0180004203.01.T01:intron 30.0%
! GAAACGTTTTACATATCACA+TGG - Chr1:74813251-74813270 MsG0180004203.01.T01:CDS 30.0%
! GGTTGCCTTTTCTTTTTATT+TGG - Chr1:74816705-74816724 MsG0180004203.01.T01:intron 30.0%
! TCTAAGCTTGAATAATGGAA+AGG - Chr1:74816373-74816392 MsG0180004203.01.T01:CDS 30.0%
! TGAACCTTCTTTTACAGAAA+TGG - Chr1:74817352-74817371 MsG0180004203.01.T01:intron 30.0%
!! AGTGCTATTTACAAAGTGTT+AGG - Chr1:74815929-74815948 MsG0180004203.01.T01:intron 30.0%
!! ATAGTTGCTATTTGACAACA+TGG + Chr1:74814448-74814467 None:intergenic 30.0%
!! TAGAGATGATGGAATTAATG+AGG + Chr1:74817267-74817286 None:intergenic 30.0%
!! TATGCGTTTTAATAACTGAC+TGG + Chr1:74815251-74815270 None:intergenic 30.0%
!! TTTCTGTTTCAGTTTTTGAG+TGG + Chr1:74815572-74815591 None:intergenic 30.0%
!!! GTATTATACTTTTGGAACGT+TGG - Chr1:74816739-74816758 MsG0180004203.01.T01:CDS 30.0%
!!! TTTCGGTATCGATTTGTTTT+TGG - Chr1:74813881-74813900 MsG0180004203.01.T01:intron 30.0%
AAATAGCAACTATAGCGTAG+TGG - Chr1:74814455-74814474 MsG0180004203.01.T01:intron 35.0%
AAATCGGATAAGATTAGGCA+TGG - Chr1:74815142-74815161 MsG0180004203.01.T01:intron 35.0%
AATAGCTCCTCTTAAAGATG+AGG - Chr1:74814251-74814270 MsG0180004203.01.T01:intron 35.0%
AATTGCTCTCATGTTATGAG+TGG + Chr1:74814304-74814323 None:intergenic 35.0%
ACAGTTGTAGAATGTCCAAA+AGG + Chr1:74816242-74816261 None:intergenic 35.0%
ACATTACTTTGAGTCTTGAG+AGG + Chr1:74816813-74816832 None:intergenic 35.0%
ACTCATAACATGAGAGCAAT+TGG - Chr1:74814303-74814322 MsG0180004203.01.T01:intron 35.0%
ATAGCTCCTCTTAAAGATGA+GGG - Chr1:74814252-74814271 MsG0180004203.01.T01:intron 35.0%
ATCATCATTTAGCAGCACAA+AGG - Chr1:74815993-74816012 MsG0180004203.01.T01:intron 35.0%
ATGACCAGAGATAACAAGAA+TGG + Chr1:74813363-74813382 None:intergenic 35.0%
ATGCTTAGGGGTTAATCATT+AGG - Chr1:74815800-74815819 MsG0180004203.01.T01:intron 35.0%
ATGGCCAATTGAACTATCAT+TGG - Chr1:74815463-74815482 MsG0180004203.01.T01:intron 35.0%
ATTCTTGACATCATGGAAAG+AGG - Chr1:74813316-74813335 MsG0180004203.01.T01:CDS 35.0%
CAACAAGAAGCTTCTAATTG+TGG + Chr1:74815857-74815876 None:intergenic 35.0%
CAAGGTTATTCATGAGAGTT+GGG - Chr1:74814741-74814760 MsG0180004203.01.T01:intron 35.0%
CATAAATCACTACGAAGAGA+AGG - Chr1:74814630-74814649 MsG0180004203.01.T01:intron 35.0%
CATGGAAATTCTTGACATCA+TGG - Chr1:74813309-74813328 MsG0180004203.01.T01:CDS 35.0%
CTTCCCAAAGAAGAAAACAA+GGG + Chr1:74815728-74815747 None:intergenic 35.0%
GAAACTAGAGTCCAATCATT+CGG + Chr1:74813865-74813884 None:intergenic 35.0%
GACTCCATTTCTGTAAAAGA+AGG + Chr1:74817359-74817378 None:intergenic 35.0%
GATACTTGAGCTGCAAATAA+AGG + Chr1:74814020-74814039 None:intergenic 35.0%
GATTATGAAGTTCTCAAGGA+AGG + Chr1:74815441-74815460 None:intergenic 35.0%
GCATACATTACACATTAGGT+TGG - Chr1:74813749-74813768 MsG0180004203.01.T01:intron 35.0%
GCTTGTAGAAAGATTTCTCT+TGG + Chr1:74817945-74817964 None:intergenic 35.0%
GGTGCATTAATGTTATGATC+AGG + Chr1:74817623-74817642 None:intergenic 35.0%
GTCTCAAATCGGATAAGATT+AGG - Chr1:74815137-74815156 MsG0180004203.01.T01:intron 35.0%
GTGTGGCCATATACATAATT+AGG + Chr1:74815369-74815388 None:intergenic 35.0%
GTTGTTGTCATGTGACTAAA+AGG - Chr1:74816563-74816582 MsG0180004203.01.T01:intron 35.0%
TAGATGAAACAATTCCTGCA+TGG - Chr1:74813291-74813310 MsG0180004203.01.T01:CDS 35.0%
TATTATGCATCCACACTTTG+AGG + Chr1:74817907-74817926 None:intergenic 35.0%
TCATGATAAGACTGATCAGA+AGG + Chr1:74817692-74817711 None:intergenic 35.0%
TCTATGAAGTTTCCTGCATT+AGG + Chr1:74815671-74815690 None:intergenic 35.0%
TGATTAACAACGTTAACGGT+TGG + Chr1:74813401-74813420 None:intergenic 35.0%
TGCAGGAATTGTTTCATCTA+TGG + Chr1:74813291-74813310 None:intergenic 35.0%
TGCTTAGGGGTTAATCATTA+GGG - Chr1:74815801-74815820 MsG0180004203.01.T01:intron 35.0%
TGGACGAAGATAAAAAACGT+GGG - Chr1:74814109-74814128 MsG0180004203.01.T01:intron 35.0%
TGTACAGCAATAATCAGCAT+GGG + Chr1:74815880-74815899 None:intergenic 35.0%
TTAAAAGAATCTCTCGTCGA+AGG - Chr1:74814375-74814394 MsG0180004203.01.T01:intron 35.0%
TTACTGCTAACAGTGTCATA+CGG - Chr1:74815968-74815987 MsG0180004203.01.T01:intron 35.0%
TTGTACAGCAATAATCAGCA+TGG + Chr1:74815881-74815900 None:intergenic 35.0%
TTGTTCTGTGATACGTGATT+TGG - Chr1:74814496-74814515 MsG0180004203.01.T01:intron 35.0%
TTTCGGTTCTCAAACAGATT+TGG + Chr1:74813666-74813685 None:intergenic 35.0%
TTTGCAAGTGAAGCAACAAA+TGG + Chr1:74817197-74817216 None:intergenic 35.0%
! CGGTCTTTTGTGTAAAAAAC+GGG - Chr1:74816608-74816627 MsG0180004203.01.T01:intron 35.0%
! GAATGATTGGACTCTAGTTT+CGG - Chr1:74813864-74813883 MsG0180004203.01.T01:intron 35.0%
! GGTCTTTTGTGTAAAAAACG+GGG - Chr1:74816609-74816628 MsG0180004203.01.T01:intron 35.0%
! GTCTTTTGTGTAAAAAACGG+GGG - Chr1:74816610-74816629 MsG0180004203.01.T01:intron 35.0%
! TCTCATTTTATGTTCCTTGC+AGG + Chr1:74814951-74814970 None:intergenic 35.0%
! TCTTGTTATCTCTGGTCATT+GGG - Chr1:74813364-74813383 MsG0180004203.01.T01:CDS 35.0%
! TTACACAAAAGACCGTTTTC+AGG + Chr1:74816603-74816622 None:intergenic 35.0%
! TTCTTGTTATCTCTGGTCAT+TGG - Chr1:74813363-74813382 MsG0180004203.01.T01:CDS 35.0%
!! CAGAAGTTTTGTCAAGAGAT+TGG - Chr1:74817866-74817885 MsG0180004203.01.T01:CDS 35.0%
!! CAGACTCTATTTCTTTTCTG+TGG + Chr1:74817556-74817575 None:intergenic 35.0%
!! GATGAGGGTGTTCTAATAAT+CGG - Chr1:74814267-74814286 MsG0180004203.01.T01:intron 35.0%
!! GCTTTTTCTTATGCCTCTTT+TGG - Chr1:74814772-74814791 MsG0180004203.01.T01:intron 35.0%
!!! GTTGATCCACTTTTGTTGTT+AGG + Chr1:74817665-74817684 None:intergenic 35.0%
AAAAAACGTGGGCTTGATCA+TGG - Chr1:74814120-74814139 MsG0180004203.01.T01:intron 40.0%
AAAGTTAGCAAAGAGGGTGA+AGG - Chr1:74814056-74814075 MsG0180004203.01.T01:intron 40.0%
AAGAACCATGCAGCTACAAT+TGG - Chr1:74817431-74817450 MsG0180004203.01.T01:intron 40.0%
AATAAATCTTGGTTGTGCGC+TGG - Chr1:74813632-74813651 MsG0180004203.01.T01:CDS 40.0%
ACTTTGAGTCTTGAGAGGTT+TGG + Chr1:74816808-74816827 None:intergenic 40.0%
AGAACACCCTCATCTTTAAG+AGG + Chr1:74814261-74814280 None:intergenic 40.0%
AGAGAAGAATCCTCAAAGTG+TGG - Chr1:74817894-74817913 MsG0180004203.01.T01:five_prime_UTR 40.0%
AGAGCAGCATAATGTTGAGA+AGG + Chr1:74817590-74817609 None:intergenic 40.0%
ATTCATGAGAGTTGGGATAG+TGG - Chr1:74814748-74814767 MsG0180004203.01.T01:intron 40.0%
CCAACTCTCATGAATAACCT+TGG + Chr1:74814743-74814762 None:intergenic 40.0%
CCAAGGTTATTCATGAGAGT+TGG - Chr1:74814740-74814759 MsG0180004203.01.T01:intron 40.0%
CGTACAACTCACCAAATGAT+AGG - Chr1:74816640-74816659 MsG0180004203.01.T01:intron 40.0%
CTCATTGCAAAGCAACACAT+TGG - Chr1:74816834-74816853 MsG0180004203.01.T01:CDS 40.0%
GAAACCGAAAGTTGACATAC+TGG + Chr1:74814189-74814208 None:intergenic 40.0%
GACTGCTAAGAGTCTCAAAT+CGG - Chr1:74815126-74815145 MsG0180004203.01.T01:intron 40.0%
GAGATAACAAGAATGGCAGA+TGG + Chr1:74813356-74813375 None:intergenic 40.0%
GAGCAGCATAATGTTGAGAA+GGG + Chr1:74817589-74817608 None:intergenic 40.0%
GATGTCAAGAATTTCCATGC+AGG + Chr1:74813308-74813327 None:intergenic 40.0%
GATGTTGTGCTTTGCAGAAA+AGG - Chr1:74817805-74817824 MsG0180004203.01.T01:CDS 40.0%
GCTTCCCAAAGAAGAAAACA+AGG + Chr1:74815729-74815748 None:intergenic 40.0%
GGAGATAAATGAGCCAAGAA+AGG + Chr1:74817644-74817663 None:intergenic 40.0%
GGCTCCAATGATAGTTCAAT+TGG + Chr1:74815470-74815489 None:intergenic 40.0%
GGTGTTCTAATAATCGGATC+CGG - Chr1:74814273-74814292 MsG0180004203.01.T01:intron 40.0%
GTCATGTGACTAAAAGGTCA+CGG - Chr1:74816569-74816588 MsG0180004203.01.T01:intron 40.0%
GTGATTTATGTCCTCGTATC+TGG + Chr1:74814620-74814639 None:intergenic 40.0%
GTGGACGAAGATAAAAAACG+TGG - Chr1:74814108-74814127 MsG0180004203.01.T01:intron 40.0%
GTTTCATCTATGGCTAGTGT+TGG + Chr1:74813281-74813300 None:intergenic 40.0%
TATGAAGTTCTCAAGGAAGG+AGG + Chr1:74815438-74815457 None:intergenic 40.0%
TCAGAAGCTAGATGAATCTG+TGG - Chr1:74817841-74817860 MsG0180004203.01.T01:CDS 40.0%
TCATGTGACTAAAAGGTCAC+GGG - Chr1:74816570-74816589 MsG0180004203.01.T01:intron 40.0%
TCATTTCTTCCCATTGCATG+TGG - Chr1:74814687-74814706 MsG0180004203.01.T01:intron 40.0%
TCTCATGTTGATGTATCCAG+AGG - Chr1:74814155-74814174 MsG0180004203.01.T01:intron 40.0%
TCTGGATACATCAACATGAG+AGG + Chr1:74814156-74814175 None:intergenic 40.0%
TGAGCTGCAAATAAAGGAAC+AGG + Chr1:74814014-74814033 None:intergenic 40.0%
TGCAATGGGAAGAAATGATC+AGG + Chr1:74814685-74814704 None:intergenic 40.0%
TGGTATACCAATGAGGAGTA+GGG - Chr1:74816759-74816778 MsG0180004203.01.T01:CDS 40.0%
TTCACCCTCTTTGCTAACTT+TGG + Chr1:74814057-74814076 None:intergenic 40.0%
TTGGTATACCAATGAGGAGT+AGG - Chr1:74816758-74816777 MsG0180004203.01.T01:CDS 40.0%
! AGGCAGGCACAATGTATTTT+TGG + Chr1:74814931-74814950 None:intergenic 40.0%
! ATTGGTGGCAATGCAATTGA+TGG - Chr1:74817449-74817468 MsG0180004203.01.T01:intron 40.0%
! ATTTTATGTTCCTTGCAGGC+AGG + Chr1:74814947-74814966 None:intergenic 40.0%
! CTTTTCTGTGGAAGTTTCTG+TGG + Chr1:74817544-74817563 None:intergenic 40.0%
! GACGAGAGATTCTTTTAACC+AGG + Chr1:74814373-74814392 None:intergenic 40.0%
! GATAGCAAGACCTCTTTTTG+TGG + Chr1:74815759-74815778 None:intergenic 40.0%
! GGACAGTCTTTTCTTCTAAG+TGG - Chr1:74816855-74816874 MsG0180004203.01.T01:CDS 40.0%
! GTTTTCCAATCTCTCCACAA+TGG - Chr1:74813957-74813976 MsG0180004203.01.T01:intron 40.0%
! TCTGCCATTCTTGTTATCTC+TGG - Chr1:74813356-74813375 MsG0180004203.01.T01:CDS 40.0%
! TTCTTCTTTGGGAAGCCAAA+CGG - Chr1:74815733-74815752 MsG0180004203.01.T01:intron 40.0%
!! TGAGAAGGTGTCCTATCATT+TGG + Chr1:74816654-74816673 None:intergenic 40.0%
!!! AGTGTGTCATTTTCTCCACT+TGG + Chr1:74817491-74817510 None:intergenic 40.0%
!!! CTGCCCTTGTTTTCTTCTTT+GGG - Chr1:74815722-74815741 MsG0180004203.01.T01:intron 40.0%
AAAGCCACCGAAATCATGGA+TGG + Chr1:74813432-74813451 None:intergenic 45.0%
AACCATGCAGCTACAATTGG+TGG - Chr1:74817434-74817453 MsG0180004203.01.T01:intron 45.0%
AAGAAAACAAGGGCAGCTCA+AGG + Chr1:74815718-74815737 None:intergenic 45.0%
AAGAATCTCTCGTCGAAGGA+AGG - Chr1:74814379-74814398 MsG0180004203.01.T01:intron 45.0%
ACCGTTTGTAGGGTTGAGTT+AGG - Chr1:74815195-74815214 MsG0180004203.01.T01:intron 45.0%
ACGGGTTCAAGTCCTGAAAA+CGG - Chr1:74816588-74816607 MsG0180004203.01.T01:intron 45.0%
ACTAGAGTCCAATCATTCGG+TGG + Chr1:74813862-74813881 None:intergenic 45.0%
AGATCGTTCGAGCGAAGAAA+GGG - Chr1:74816298-74816317 MsG0180004203.01.T01:intron 45.0%
AGCTGCTGGTGAGAATTCAA+AGG - Chr1:74814717-74814736 MsG0180004203.01.T01:intron 45.0%
AGCTGCTGTGAAACCAAAAG+AGG + Chr1:74814788-74814807 None:intergenic 45.0%
AGGGACAACCACCAAATCTA+GGG - Chr1:74816778-74816797 MsG0180004203.01.T01:CDS 45.0%
AGTTCTCAAGGAAGGAGGAT+TGG + Chr1:74815433-74815452 None:intergenic 45.0%
ATGATTTCGGTGGCTTTCCT+AGG - Chr1:74813435-74813454 MsG0180004203.01.T01:CDS 45.0%
ATGGACCATTGTGGAGAGAT+TGG + Chr1:74813965-74813984 None:intergenic 45.0%
CAAACCTTGTACATGCTCCT+AGG + Chr1:74813455-74813474 None:intergenic 45.0%
CATACTGGTATATCAGCCTC+TGG + Chr1:74814174-74814193 None:intergenic 45.0%
CATGTTATGAGTGGCACTTC+CGG + Chr1:74814295-74814314 None:intergenic 45.0%
CCTTCTCAAAACTGCGTATG+CGG - Chr1:74816666-74816685 MsG0180004203.01.T01:intron 45.0%
CTTCTCAAAACTGCGTATGC+GGG - Chr1:74816667-74816686 MsG0180004203.01.T01:intron 45.0%
GAAACCATCCATGATTTCGG+TGG - Chr1:74813425-74813444 MsG0180004203.01.T01:CDS 45.0%
GCCTAACTCAACCCTACAAA+CGG + Chr1:74815199-74815218 None:intergenic 45.0%
GGAACGTTGGTATACCAATG+AGG - Chr1:74816752-74816771 MsG0180004203.01.T01:CDS 45.0%
GGCTCCAAAGTTAGCAAAGA+GGG - Chr1:74814050-74814069 MsG0180004203.01.T01:intron 45.0%
GTGTAGCCGATCCCATTTAA+TGG - Chr1:74813609-74813628 MsG0180004203.01.T01:CDS 45.0%
TAGGAAAGCCACCGAAATCA+TGG + Chr1:74813436-74813455 None:intergenic 45.0%
TAGGGACAACCACCAAATCT+AGG - Chr1:74816777-74816796 MsG0180004203.01.T01:CDS 45.0%
TGCTCAATGTTCCAGATACG+AGG - Chr1:74814606-74814625 MsG0180004203.01.T01:intron 45.0%
TGGGCTTGATCATGGAACAT+GGG - Chr1:74814128-74814147 MsG0180004203.01.T01:intron 45.0%
TGGTGAGAATTCAAAGGCCA+AGG - Chr1:74814723-74814742 MsG0180004203.01.T01:intron 45.0%
TGTTGTCAAACTGCAGCTAG+TGG - Chr1:74814526-74814545 MsG0180004203.01.T01:intron 45.0%
TTAGGCCATCTTTGCTTACC+CGG + Chr1:74813810-74813829 None:intergenic 45.0%
TTCCCATTGCATGTGGCTAT+GGG - Chr1:74814694-74814713 MsG0180004203.01.T01:intron 45.0%
! AAGGAACTGATCGAAGCATC+TGG - Chr1:74814075-74814094 MsG0180004203.01.T01:intron 45.0%
! AGGAACTGATCGAAGCATCT+GGG - Chr1:74814076-74814095 MsG0180004203.01.T01:intron 45.0%
! CATTCGGTGGAACCAAAGTT+CGG + Chr1:74813849-74813868 None:intergenic 45.0%
! CTTTCCTAGGAGCATGTACA+AGG - Chr1:74813448-74813467 MsG0180004203.01.T01:CDS 45.0%
! CTTTGGTTCCACCGAATGAT+TGG - Chr1:74813851-74813870 MsG0180004203.01.T01:intron 45.0%
! GGCAATGCAATTGATGGATG+TGG - Chr1:74817455-74817474 MsG0180004203.01.T01:intron 45.0%
!!! GCTGCCCTTGTTTTCTTCTT+TGG - Chr1:74815721-74815740 MsG0180004203.01.T01:intron 45.0%
ACTCAACCCTACAAACGGTG+AGG + Chr1:74815194-74815213 None:intergenic 50.0%
AGAATGGCAGATGGTCTCTC+AGG + Chr1:74813347-74813366 None:intergenic 50.0%
AGACAGACCTCACCGTTTGT+AGG - Chr1:74815184-74815203 MsG0180004203.01.T01:intron 50.0%
AGCCAAACGGCCACAAAAAG+AGG - Chr1:74815746-74815765 MsG0180004203.01.T01:intron 50.0%
AGCTCAAGTATCCAGCACCA+GGG - Chr1:74814028-74814047 MsG0180004203.01.T01:intron 50.0%
ATACATTGTGCCTGCCTGCA+AGG - Chr1:74814934-74814953 MsG0180004203.01.T01:intron 50.0%
ATGCGAAAGTGGCTCATCCA+TGG - Chr1:74814659-74814678 MsG0180004203.01.T01:intron 50.0%
CAAGGGCAGCTCAAGGAATT+TGG + Chr1:74815711-74815730 None:intergenic 50.0%
CAGATCGTTCGAGCGAAGAA+AGG - Chr1:74816297-74816316 MsG0180004203.01.T01:intron 50.0%
CTCCCATAGCCACATGCAAT+GGG + Chr1:74814699-74814718 None:intergenic 50.0%
CTGATCCGGGTAAGCAAAGA+TGG - Chr1:74813802-74813821 MsG0180004203.01.T01:intron 50.0%
CTTCCCATTGCATGTGGCTA+TGG - Chr1:74814693-74814712 MsG0180004203.01.T01:intron 50.0%
GAATCAAATGCCAGAGCCCA+GGG + Chr1:74814351-74814370 None:intergenic 50.0%
GACAGACCTCACCGTTTGTA+GGG - Chr1:74815185-74815204 MsG0180004203.01.T01:intron 50.0%
GATCGTTCGAGCGAAGAAAG+GGG - Chr1:74816299-74816318 MsG0180004203.01.T01:intron 50.0%
GCTTTGCAGAAAAGGCTGAG+TGG - Chr1:74817813-74817832 MsG0180004203.01.T01:CDS 50.0%
GGGAAGAAATGATCAGGCCA+TGG + Chr1:74814679-74814698 None:intergenic 50.0%
GGGCTCCAAAGTTAGCAAAG+AGG - Chr1:74814049-74814068 MsG0180004203.01.T01:intron 50.0%
GGTTTGGACTGCCCTAGATT+TGG + Chr1:74816792-74816811 None:intergenic 50.0%
GTCAGAGTCGTAGGCACAAT+AGG - Chr1:74816413-74816432 MsG0180004203.01.T01:CDS 50.0%
GTGGGCTTGATCATGGAACA+TGG - Chr1:74814127-74814146 MsG0180004203.01.T01:intron 50.0%
TCCTCTATGGTCAGAGTCGT+AGG - Chr1:74816404-74816423 MsG0180004203.01.T01:CDS 50.0%
TGCCACCAATTGTAGCTGCA+TGG + Chr1:74817439-74817458 None:intergenic 50.0%
TGGTTGTCCCTACTCCTCAT+TGG + Chr1:74816769-74816788 None:intergenic 50.0%
TGTGGTGAGTTCATGCCAAG+TGG - Chr1:74817473-74817492 MsG0180004203.01.T01:intron 50.0%
TTGCAGAAAAGGCTGAGTGG+AGG - Chr1:74817816-74817835 MsG0180004203.01.T01:CDS 50.0%
TTGGACTGCCCTAGATTTGG+TGG + Chr1:74816789-74816808 None:intergenic 50.0%
! ATGCGGGAGCTTTAATGCAC+CGG - Chr1:74816683-74816702 MsG0180004203.01.T01:intron 50.0%
! GACCTCTTTTTGTGGCCGTT+TGG + Chr1:74815751-74815770 None:intergenic 50.0%
! GGATGAGCCACTTTCGCATA+TGG + Chr1:74814658-74814677 None:intergenic 50.0%
!! TTTGCTAACTTTGGAGCCCC+TGG + Chr1:74814048-74814067 None:intergenic 50.0%
!!! CCGCATACGCAGTTTTGAGA+AGG + Chr1:74816669-74816688 None:intergenic 50.0%
CAGCTCAAGTATCCAGCACC+AGG - Chr1:74814027-74814046 MsG0180004203.01.T01:intron 55.0%
GCCTACGACTCTGACCATAG+AGG + Chr1:74816408-74816427 None:intergenic 55.0%
GCTCAAGTATCCAGCACCAG+GGG - Chr1:74814029-74814048 MsG0180004203.01.T01:intron 55.0%
GCTCCCATAGCCACATGCAA+TGG + Chr1:74814700-74814719 None:intergenic 55.0%
GGAATCAAATGCCAGAGCCC+AGG + Chr1:74814352-74814371 None:intergenic 55.0%
! AGCATCTGGGTTGAGTCGAG+TGG - Chr1:74814089-74814108 MsG0180004203.01.T01:intron 55.0%
! GGGCTCTGGCATTTGATTCC+TGG - Chr1:74814352-74814371 MsG0180004203.01.T01:intron 55.0%
! TGCGGGAGCTTTAATGCACC+GGG - Chr1:74816684-74816703 MsG0180004203.01.T01:intron 55.0%
!! AAAGGCGCTGCAGTCCTCTA+TGG - Chr1:74816391-74816410 MsG0180004203.01.T01:CDS 55.0%
!! GAAGGCGCCATATGCGAAAG+TGG - Chr1:74814648-74814667 MsG0180004203.01.T01:intron 55.0%
AGAAAGCCCTCCTCCTCCCT+GGG - Chr1:74814332-74814351 MsG0180004203.01.T01:intron 60.0%
CATGTGGCTATGGGAGCTGC+TGG - Chr1:74814703-74814722 MsG0180004203.01.T01:intron 60.0%
TCAAATGCCAGAGCCCAGGG+AGG + Chr1:74814348-74814367 None:intergenic 60.0%
!! AACTTTGGAGCCCCTGGTGC+TGG + Chr1:74814042-74814061 None:intergenic 60.0%
AATGCCAGAGCCCAGGGAGG+AGG + Chr1:74814345-74814364 None:intergenic 65.0%
GAGAAAGCCCTCCTCCTCCC+TGG - Chr1:74814331-74814350 MsG0180004203.01.T01:intron 65.0%
GGAGGAGGAGGGCTTTCTCG+AGG + Chr1:74814330-74814349 None:intergenic 65.0%
CCAGAGCCCAGGGAGGAGGA+GGG + Chr1:74814341-74814360 None:intergenic 70.0%
CCCTCCTCCTCCCTGGGCTC+TGG - Chr1:74814338-74814357 MsG0180004203.01.T01:intron 75.0%
GCCAGAGCCCAGGGAGGAGG+AGG + Chr1:74814342-74814361 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
Chr1 gene 74813159 74817967 74813159 ID=MsG0180004203.01;Name=MsG0180004203.01
Chr1 mRNA 74813159 74817967 74813159 ID=MsG0180004203.01.T01;Parent=MsG0180004203.01;Name=MsG0180004203.01.T01;_AED=0.38;_eAED=0.38;_QI=80|0.66|0.5|1|1|1|4|0|457
Chr1 exon 74813159 74813757 74813159 ID=MsG0180004203.01.T01:exon:31659;Parent=MsG0180004203.01.T01
Chr1 exon 74816333 74816505 74816333 ID=MsG0180004203.01.T01:exon:31658;Parent=MsG0180004203.01.T01
Chr1 exon 74816726 74817096 74816726 ID=MsG0180004203.01.T01:exon:31657;Parent=MsG0180004203.01.T01
Chr1 exon 74817657 74817967 74817657 ID=MsG0180004203.01.T01:exon:31656;Parent=MsG0180004203.01.T01
Chr1 five_prime_UTR 74817888 74817967 74817888 ID=MsG0180004203.01.T01:five_prime_utr;Parent=MsG0180004203.01.T01
Chr1 CDS 74817657 74817887 74817657 ID=MsG0180004203.01.T01:cds;Parent=MsG0180004203.01.T01
Chr1 CDS 74816726 74817096 74816726 ID=MsG0180004203.01.T01:cds;Parent=MsG0180004203.01.T01
Chr1 CDS 74816333 74816505 74816333 ID=MsG0180004203.01.T01:cds;Parent=MsG0180004203.01.T01
Chr1 CDS 74813159 74813757 74813159 ID=MsG0180004203.01.T01:cds;Parent=MsG0180004203.01.T01
Gene Sequence

>MsG0180004203.01.T01

ATGGCATTGAAGGAAACGTTTTACATATCACATGGATCACCAACACTAGCCATAGATGAAACAATTCCTGCATGGAAATTCTTGACATCATGGAAAGAGGTGTTTCCTGAGAGACCATCTGCCATTCTTGTTATCTCTGGTCATTGGGACACTTCTGTTCCAACCGTTAACGTTGTTAATCACAATGAAACCATCCATGATTTCGGTGGCTTTCCTAGGAGCATGTACAAGCTCAAGTATCCAGCACCAGGGGCTCCAAAGTTAGCAAAGAGGGTGAAGGAACTGATCGAAGCATCTGGGTTGAGTCGAGTGGACGAAGATAAAAAACGTGGGCTTGATCATGGAACATGGGTGCCTCTCATGTTGATGTATCCAGAGGCTGATATACCAGTATGTCAACTTTCGGTTTCATCAAATAGAAATGGTACTTACCATTATAACTTAGGAAAAGCAATAGCTCCTCTTAAAGATGAGGGTGTTCTAATAATCGGATCCGGAAGTGCCACTCATAACATGAGAGCAATTGGTCCTCGAGAAAGCCCTCCTCCTCCCTGGGCTCTGGCATTTGATTCCTGGTTAAAAGAATCTCTCGTCGAAGGAAGATACGAGGACATAAATCACTACGAAGAGAAGGCGCCATATGCGAAAGTGGCTCATCCATGGCCTGATCATTTCTTCCCATTGCATGTGGCTATGGGAGCTGCTGGTGAGAATTCAAAGGCCAAGGTTATTCATGAGAGTTGGGATAGTGGTGCTTTTTCTTATGCCTCTTTTGAAATGGAGTCTAGCATTTTTCATGTTGAGAAAAAGATAGTAGTGAAATATAAAGAGTGTCTCAAGAACCATGCAGCTACAATTGGTGGCAATGCAATTGATGGATGTGGTGAGTTCATGCCAAGTGGAGAAAATGACACACTTGAAGCTCTCAAATGTTGTGCATGCAATTGCCACAGAAACTTCCACAGAAAAGAAATAGAGTCTGATTTCAATAGCCCTTCTCAACATTATGCTGCTCTTTCACTGATTCCTGATCATAACATTAATGCACCTTTCTTGGCTCATTTATCTCCTAACAACAAAAGTGGATCAACTAGTCCTTCTGATCAGTCTTATCATGAGAAAGATTGTATTAAGGATGTGGAAAATCGAACCGAAAAGATGATAGTTAAGAAGAGGTCTAGAACTAAGTTCAGTAAAGAACAGAAGGAGAAGATGTTGTGCTTTGCAGAAAAGGCTGAGTGGAGGATTCAGAAGCTAGATGAATCTGTGGTGCAGAAGTTTTGTCAAGAGATTGGAATCAAGAGAAGAATCCTCAAAGTGTGGATGCATAATAACAAGAACACTTTTGCCAAGAGAAATCTTTCTACAAGCTAG

Protein sequence

>MsG0180004203.01.T01

MALKETFYISHGSPTLAIDETIPAWKFLTSWKEVFPERPSAILVISGHWDTSVPTVNVVNHNETIHDFGGFPRSMYKLKYPAPGAPKLAKRVKELIEASGLSRVDEDKKRGLDHGTWVPLMLMYPEADIPVCQLSVSSNRNGTYHYNLGKAIAPLKDEGVLIIGSGSATHNMRAIGPRESPPPPWALAFDSWLKESLVEGRYEDINHYEEKAPYAKVAHPWPDHFFPLHVAMGAAGENSKAKVIHESWDSGAFSYASFEMESSIFHVEKKIVVKYKECLKNHAATIGGNAIDGCGEFMPSGENDTLEALKCCACNCHRNFHRKEIESDFNSPSQHYAALSLIPDHNINAPFLAHLSPNNKSGSTSPSDQSYHEKDCIKDVENRTEKMIVKKRSRTKFSKEQKEKMLCFAEKAEWRIQKLDESVVQKFCQEIGIKRRILKVWMHNNKNTFAKRNLSTS*