Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480018807.01.T01 | XP_003604797.1 | 98.333 | 180 | 3 | 0 | 1 | 180 | 1 | 180 | 4.45E-125 | 359 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480018807.01.T01 | G7JR81 | 98.333 | 180 | 3 | 0 | 1 | 180 | 1 | 180 | 2.13e-125 | 359 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048345.01 | MsG0480018807.01 | 0.823658 | 1.229977e-53 | 1.065767e-50 |
| MsG0080048348.01 | MsG0480018807.01 | 0.803318 | 3.691174e-49 | 1.849134e-46 |
| MsG0080048352.01 | MsG0480018807.01 | 0.811056 | 8.474885e-51 | 5.193559e-48 |
| MsG0180000437.01 | MsG0480018807.01 | 0.801965 | 7.020951e-49 | 3.397828e-46 |
| MsG0180000930.01 | MsG0480018807.01 | 0.833006 | 6.831208e-56 | 7.766399e-53 |
| MsG0180001050.01 | MsG0480018807.01 | 0.847431 | 1.161675e-59 | 2.064412e-56 |
| MsG0180003240.01 | MsG0480018807.01 | 0.869064 | 4.094789e-66 | 1.515725e-62 |
| MsG0180004181.01 | MsG0480018807.01 | 0.837592 | 4.746622e-57 | 6.195300e-54 |
| MsG0180004203.01 | MsG0480018807.01 | 0.871236 | 7.971974e-67 | 3.192412e-63 |
| MsG0180004296.01 | MsG0480018807.01 | 0.827329 | 1.661693e-54 | 1.599285e-51 |
| MsG0180004328.01 | MsG0480018807.01 | 0.804647 | 1.953973e-49 | 1.012926e-46 |
| MsG0180004393.01 | MsG0480018807.01 | 0.816337 | 5.826778e-52 | 4.117517e-49 |
| MsG0180004562.01 | MsG0480018807.01 | 0.831059 | 2.068733e-55 | 2.219861e-52 |
| MsG0180005356.01 | MsG0480018807.01 | 0.803975 | 2.697439e-49 | 1.374403e-46 |
| MsG0180005357.01 | MsG0480018807.01 | 0.827420 | 1.579895e-54 | 1.524556e-51 |
| MsG0180005959.01 | MsG0480018807.01 | 0.816771 | 4.656312e-52 | 3.329626e-49 |
| MsG0280011053.01 | MsG0480018807.01 | 0.815779 | 7.759880e-52 | 5.400830e-49 |
| MsG0280011349.01 | MsG0480018807.01 | 0.801250 | 9.837870e-49 | 4.676065e-46 |
| MsG0280011350.01 | MsG0480018807.01 | 0.802428 | 5.637494e-49 | 2.760918e-46 |
| MsG0380011613.01 | MsG0480018807.01 | 0.861882 | 7.507664e-64 | 2.156162e-60 |
| MsG0380013300.01 | MsG0480018807.01 | 0.803881 | 2.821269e-49 | 1.434035e-46 |
| MsG0380013452.01 | MsG0480018807.01 | 0.804476 | 2.121094e-49 | 1.094692e-46 |
| MsG0380013458.01 | MsG0480018807.01 | 0.805485 | 1.305186e-49 | 6.913466e-47 |
| MsG0480018807.01 | MsG0480019107.01 | 0.830419 | 2.969010e-55 | 3.126262e-52 |
| MsG0480018807.01 | MsG0480021135.01 | 0.822260 | 2.604956e-53 | 2.169356e-50 |
| MsG0480018807.01 | MsG0480022125.01 | 0.810348 | 1.205170e-50 | 7.247271e-48 |
| MsG0480018807.01 | MsG0480022680.01 | 0.801840 | 7.446603e-49 | 3.592685e-46 |
| MsG0480018807.01 | MsG0480022736.01 | 0.822520 | 2.267217e-53 | 1.902224e-50 |
| MsG0480018807.01 | MsG0480023349.01 | 0.815875 | 7.388260e-52 | 5.154941e-49 |
| MsG0480018807.01 | MsG0580025180.01 | 0.811973 | 5.355484e-51 | 3.362485e-48 |
| MsG0480018807.01 | MsG0580025683.01 | 0.807214 | 5.639221e-50 | 3.122743e-47 |
| MsG0480018807.01 | MsG0580025870.01 | 0.803102 | 4.092265e-49 | 2.038669e-46 |
| MsG0480018807.01 | MsG0580029555.01 | 0.832086 | 1.155054e-55 | 1.277630e-52 |
| MsG0480018807.01 | MsG0680031429.01 | 0.832569 | 8.771005e-56 | 9.842073e-53 |
| MsG0480018807.01 | MsG0680034919.01 | 0.822921 | 1.828662e-53 | 1.551780e-50 |
| MsG0480018807.01 | MsG0680035496.01 | 0.808981 | 2.370763e-50 | 1.375031e-47 |
| MsG0480018807.01 | MsG0780039190.01 | 0.800936 | 1.140642e-48 | 5.378859e-46 |
| MsG0480018807.01 | MsG0780039334.01 | 0.840612 | 7.830008e-58 | 1.121297e-54 |
| MsG0480018807.01 | MsG0780039968.01 | 0.847368 | 1.209112e-59 | 2.144256e-56 |
| MsG0480018807.01 | MsG0780040480.01 | 0.848509 | 5.857977e-60 | 1.077592e-56 |
| MsG0480018807.01 | MsG0780041299.01 | 0.811665 | 6.250109e-51 | 3.891810e-48 |
| MsG0480018807.01 | MsG0780041556.01 | 0.813856 | 2.071309e-51 | 1.368029e-48 |
| MsG0480018807.01 | MsG0880042810.01 | 0.826596 | 2.487350e-54 | 2.343058e-51 |
| MsG0480018807.01 | MsG0880043824.01 | 0.825567 | 4.368053e-54 | 3.996009e-51 |
| MsG0480018807.01 | MsG0880044669.01 | 0.810550 | 1.090395e-50 | 6.592126e-48 |
| MsG0480018807.01 | MsG0880047081.01 | 0.809255 | 2.070924e-50 | 1.209994e-47 |
| MsG0480018807.01 | MsG0880047486.01 | 0.810652 | 1.036330e-50 | 6.282656e-48 |
| MsG0480018807.01 | MsG0880047491.01 | 0.809133 | 2.199846e-50 | 1.281153e-47 |
| MsG0380017386.01 | MsG0480018807.01 | 0.835337 | 1.779950e-56 | 2.170280e-53 |
| MsG0280007759.01 | MsG0480018807.01 | 0.809588 | 1.756814e-50 | 1.035659e-47 |
| MsG0280008601.01 | MsG0480018807.01 | 0.801347 | 9.397858e-49 | 4.477870e-46 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480018807.01.T01 | MTR_4g018880 | 98.333 | 180 | 3 | 0 | 1 | 180 | 1 | 180 | 5.39e-129 | 359 |
| MsG0480018807.01.T01 | MTR_4g018860 | 84.024 | 169 | 27 | 0 | 1 | 169 | 1 | 169 | 5.31e-105 | 300 |
| MsG0480018807.01.T01 | MTR_4g018850 | 81.564 | 179 | 33 | 0 | 1 | 179 | 1 | 179 | 9.38e-101 | 289 |
| MsG0480018807.01.T01 | MTR_4g018880 | 97.727 | 132 | 3 | 0 | 1 | 132 | 1 | 132 | 2.01e-92 | 265 |
| MsG0480018807.01.T01 | MTR_7g066110 | 68.452 | 168 | 53 | 0 | 11 | 178 | 1 | 168 | 4.63e-85 | 248 |
| MsG0480018807.01.T01 | MTR_6g452730 | 52.201 | 159 | 74 | 2 | 9 | 165 | 5 | 163 | 5.62e-57 | 177 |
| MsG0480018807.01.T01 | MTR_1g101120 | 54.248 | 153 | 69 | 1 | 15 | 166 | 18 | 170 | 7.63e-57 | 177 |
| MsG0480018807.01.T01 | MTR_7g066090 | 63.158 | 76 | 28 | 0 | 1 | 76 | 1 | 76 | 2.59e-29 | 103 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480018807.01.T01 | AT3G54040 | 54.011 | 187 | 76 | 5 | 1 | 181 | 1 | 183 | 1.03e-63 | 194 |
| MsG0480018807.01.T01 | AT3G54040 | 54.011 | 187 | 76 | 5 | 1 | 181 | 57 | 239 | 3.15e-63 | 195 |
| MsG0480018807.01.T01 | AT5G52390 | 43.956 | 182 | 93 | 2 | 7 | 179 | 1 | 182 | 1.54e-50 | 161 |
Find 54 sgRNAs with CRISPR-Local
Find 91 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACCTTCTTCTCAGTAATTT+TGG | 0.107847 | 4:-10151907 | MsG0480018807.01.T01:exon |
| GTTCTCCGATTATCAAATTT+TGG | 0.174880 | 4:-10151701 | MsG0480018807.01.T01:three_prime_UTR |
| AAAGGTATAGTTTGGGAAAA+TGG | 0.222736 | 4:+10153445 | None:intergenic |
| AATATATAAATTTAATGTTT+TGG | 0.227941 | 4:+10151866 | None:intergenic |
| TTCTAAATAAAGGTATAGTT+TGG | 0.253324 | 4:+10153437 | None:intergenic |
| TTTCTCATCCATGCATCTTT+AGG | 0.256802 | 4:-10153367 | MsG0480018807.01.T01:intron |
| AAAATGGAGAAGTTGTATTT+AGG | 0.267495 | 4:+10153461 | None:intergenic |
| AAGAAAAGGTCAACAATGTT+AGG | 0.281319 | 4:+10152922 | None:intergenic |
| TTGTGTTTCTCACATAGTTC+TGG | 0.298056 | 4:+10152031 | None:intergenic |
| TTTGGAATTGTTTCTACTCT+TGG | 0.333913 | 4:-10151683 | MsG0480018807.01.T01:three_prime_UTR |
| TTTCTCAAGCAAACTATCAT+TGG | 0.351663 | 4:-10153407 | MsG0480018807.01.T01:CDS |
| AAAGACATGGTTCTAAATAA+AGG | 0.352345 | 4:+10153427 | None:intergenic |
| CAATTCCAAAATTTGATAAT+CGG | 0.354491 | 4:+10151696 | None:intergenic |
| TGCATTTGGTCCCGCTTCTT+CGG | 0.355225 | 4:-10151963 | MsG0480018807.01.T01:CDS |
| GTGAGCTCCGGAGCTGCATT+TGG | 0.357959 | 4:-10151977 | MsG0480018807.01.T01:CDS |
| ATCTGGAAAGAGATGTTTGT+TGG | 0.389390 | 4:-10153151 | MsG0480018807.01.T01:CDS |
| GAAGTTGTATTTAGGAAAGA+AGG | 0.394771 | 4:+10153469 | None:intergenic |
| TCTAAATAAAGGTATAGTTT+GGG | 0.400681 | 4:+10153438 | None:intergenic |
| TGTTTGTTGGAGACTCAAAA+AGG | 0.420286 | 4:-10153138 | MsG0480018807.01.T01:CDS |
| ACTTTCTCAGTAGCTTCATC+TGG | 0.424996 | 4:-10153168 | MsG0480018807.01.T01:CDS |
| GAGAAAGTACACACTTCCTT+TGG | 0.445012 | 4:+10153183 | None:intergenic |
| AGCGGGACCAAATGCAGCTC+CGG | 0.458285 | 4:+10151970 | None:intergenic |
| CAGCAGCCATATTGAAGAAA+AGG | 0.460023 | 4:+10152908 | None:intergenic |
| CTCCAAAATTACTGAGAAGA+AGG | 0.460063 | 4:+10151905 | None:intergenic |
| TTCAATATGGCTGCTGGAGA+GGG | 0.471243 | 4:-10152901 | MsG0480018807.01.T01:intron |
| TTCTTTGAACCACAATTCAC+TGG | 0.475595 | 4:-10152979 | MsG0480018807.01.T01:CDS |
| GTAATAATATCAAGTTGAGC+TGG | 0.478219 | 4:-10151768 | MsG0480018807.01.T01:three_prime_UTR |
| CTATAGTAGAGGATATATAG+AGG | 0.488277 | 4:-10151833 | MsG0480018807.01.T01:three_prime_UTR |
| TAGAACATCTGAAGTTATAG+TGG | 0.488747 | 4:-10153088 | MsG0480018807.01.T01:CDS |
| CTTCAATATGGCTGCTGGAG+AGG | 0.505716 | 4:-10152902 | MsG0480018807.01.T01:CDS |
| CAAAGTTTGCCAGTGAATTG+TGG | 0.513259 | 4:+10152970 | None:intergenic |
| ATGGTCGAGCTTGTGAGCTC+CGG | 0.514705 | 4:-10151989 | MsG0480018807.01.T01:CDS |
| AGAAAAGGTCAACAATGTTA+GGG | 0.524892 | 4:+10152923 | None:intergenic |
| TGAGAAGAAGGTGCAGCTGC+AGG | 0.526134 | 4:+10151917 | None:intergenic |
| GACCAACCCTCGTCGTGCTA+TGG | 0.530876 | 4:-10152008 | MsG0480018807.01.T01:CDS |
| TCCTCTGAAACCGAAGAAGC+GGG | 0.533162 | 4:+10151953 | None:intergenic |
| GTCCTCTGAAACCGAAGAAG+CGG | 0.562733 | 4:+10151952 | None:intergenic |
| TCCCGCTTCTTCGGTTTCAG+AGG | 0.566231 | 4:-10151954 | MsG0480018807.01.T01:CDS |
| TCCTATGTTTACTATAGTAG+AGG | 0.567624 | 4:-10151844 | MsG0480018807.01.T01:three_prime_UTR |
| TATAGTAGAGGATATATAGA+GGG | 0.575325 | 4:-10151832 | MsG0480018807.01.T01:three_prime_UTR |
| GACCATAGCACGACGAGGGT+TGG | 0.575610 | 4:+10152006 | None:intergenic |
| TAATAATATCAAGTTGAGCT+GGG | 0.579142 | 4:-10151767 | MsG0480018807.01.T01:three_prime_UTR |
| TGCAGCTGAAATGGCATGTG+AGG | 0.589265 | 4:-10153211 | MsG0480018807.01.T01:intron |
| TATACATACCTAAAGATGCA+TGG | 0.589615 | 4:+10153359 | None:intergenic |
| TCCTCTACTATAGTAAACAT+AGG | 0.591635 | 4:+10151843 | None:intergenic |
| CACCACATGCTTCCACACAT+TGG | 0.599473 | 4:+10153037 | None:intergenic |
| GGTGTTGATAGAAGTTCTGT+TGG | 0.610517 | 4:-10153018 | MsG0480018807.01.T01:CDS |
| TAGTTTGCTTGAGAAAGACA+TGG | 0.639175 | 4:+10153414 | None:intergenic |
| TCAAAACAAATTCAATAACA+AGG | 0.649748 | 4:+10151796 | None:intergenic |
| GGCATGTGAGGACTTACCAA+AGG | 0.656235 | 4:-10153199 | MsG0480018807.01.T01:CDS |
| AGCTCGACCATAGCACGACG+AGG | 0.664011 | 4:+10152001 | None:intergenic |
| CATTGAGACAGACCAATGTG+TGG | 0.673666 | 4:-10153049 | MsG0480018807.01.T01:CDS |
| GCTCGACCATAGCACGACGA+GGG | 0.698174 | 4:+10152002 | None:intergenic |
| GACCAATGTGTGGAAGCATG+TGG | 0.721045 | 4:-10153039 | MsG0480018807.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTAATATAATTATATGTGT+TGG | - | Chr4:10152476-10152495 | MsG0480018807.01.T01:intron | 10.0% |
| !!! | TTTGAAGATAAAATATTTTA+TGG | + | Chr4:10152932-10152951 | None:intergenic | 10.0% |
| !! | ATTAAAAAAAAATGTAACCT+AGG | - | Chr4:10153001-10153020 | MsG0480018807.01.T01:CDS | 15.0% |
| !!! | GATTTTTTTCAAATTATTAG+TGG | + | Chr4:10152450-10152469 | None:intergenic | 15.0% |
| !! | ATTGTAGATATTGGAAAATT+TGG | + | Chr4:10152698-10152717 | None:intergenic | 20.0% |
| !! | TAGAAAATAAACAAATTCCT+AGG | + | Chr4:10153021-10153040 | None:intergenic | 20.0% |
| !! | TCAAAACAAATTCAATAACA+AGG | + | Chr4:10153387-10153406 | None:intergenic | 20.0% |
| !! | TTTATCTTCAAATCTAATCA+AGG | - | Chr4:10152940-10152959 | MsG0480018807.01.T01:CDS | 20.0% |
| !!! | CAATTCCAAAATTTGATAAT+CGG | + | Chr4:10153487-10153506 | None:intergenic | 20.0% |
| !!! | TCTAAATAAAGGTATAGTTT+GGG | + | Chr4:10151745-10151764 | None:intergenic | 20.0% |
| !!! | TTAGTTGTTCATTTTTTTCT+TGG | - | Chr4:10151902-10151921 | MsG0480018807.01.T01:exon | 20.0% |
| !!! | TTCTAAATAAAGGTATAGTT+TGG | + | Chr4:10151746-10151765 | None:intergenic | 20.0% |
| !!! | TTTTCCAATATCTACAATTT+TGG | - | Chr4:10152700-10152719 | MsG0480018807.01.T01:intron | 20.0% |
| ! | AAAATGGAGAAGTTGTATTT+AGG | + | Chr4:10151722-10151741 | None:intergenic | 25.0% |
| ! | AGTTGTGTCTAAATTACAAT+AGG | - | Chr4:10152357-10152376 | MsG0480018807.01.T01:intron | 25.0% |
| ! | ATGCCAATTAACAAAACATA+AGG | + | Chr4:10153083-10153102 | None:intergenic | 25.0% |
| ! | TATAGTAGAGGATATATAGA+GGG | - | Chr4:10153348-10153367 | MsG0480018807.01.T01:intron | 25.0% |
| ! | TTCTTTAATTCTTCTATGCA+AGG | - | Chr4:10152781-10152800 | MsG0480018807.01.T01:intron | 25.0% |
| !! | TAAACATTGCTCTAAATGTA+AGG | + | Chr4:10152853-10152872 | None:intergenic | 25.0% |
| !! | TTAAACTATTCTAGAGAAAC+CGG | + | Chr4:10152585-10152604 | None:intergenic | 25.0% |
| !!! | AAAGACATGGTTCTAAATAA+AGG | + | Chr4:10151756-10151775 | None:intergenic | 25.0% |
| !!! | TAATAATATCAAGTTGAGCT+GGG | - | Chr4:10153413-10153432 | MsG0480018807.01.T01:CDS | 25.0% |
| !!! | TCTCCTTATGTTTTGTTAAT+TGG | - | Chr4:10153077-10153096 | MsG0480018807.01.T01:CDS | 25.0% |
| AAGAAAAGGTCAACAATGTT+AGG | + | Chr4:10152261-10152280 | None:intergenic | 30.0% | |
| AGAAAAGGTCAACAATGTTA+GGG | + | Chr4:10152260-10152279 | None:intergenic | 30.0% | |
| CCTGTTGTCACATAAATTTA+AGG | + | Chr4:10153119-10153138 | None:intergenic | 30.0% | |
| CCTTAAATTTATGTGACAAC+AGG | - | Chr4:10153116-10153135 | MsG0480018807.01.T01:CDS | 30.0% | |
| CTATAGTAGAGGATATATAG+AGG | - | Chr4:10153347-10153366 | MsG0480018807.01.T01:intron | 30.0% | |
| GAAGTTGTATTTAGGAAAGA+AGG | + | Chr4:10151714-10151733 | None:intergenic | 30.0% | |
| TATACATACCTAAAGATGCA+TGG | + | Chr4:10151824-10151843 | None:intergenic | 30.0% | |
| TCCTATGTTTACTATAGTAG+AGG | - | Chr4:10153336-10153355 | MsG0480018807.01.T01:intron | 30.0% | |
| TCCTCTACTATAGTAAACAT+AGG | + | Chr4:10153340-10153359 | None:intergenic | 30.0% | |
| TTTCTCAAGCAAACTATCAT+TGG | - | Chr4:10151773-10151792 | MsG0480018807.01.T01:three_prime_UTR | 30.0% | |
| ! | AAAGGTATAGTTTGGGAAAA+TGG | + | Chr4:10151738-10151757 | None:intergenic | 30.0% |
| ! | ACAAATTTTTGCAGCTGAAA+TGG | - | Chr4:10151960-10151979 | MsG0480018807.01.T01:CDS | 30.0% |
| ! | ATTGCTCTAAATGTAAGGAA+AGG | + | Chr4:10152848-10152867 | None:intergenic | 30.0% |
| ! | GTTCTCCGATTATCAAATTT+TGG | - | Chr4:10153479-10153498 | MsG0480018807.01.T01:five_prime_UTR | 30.0% |
| ! | TAGAACATCTGAAGTTATAG+TGG | - | Chr4:10152092-10152111 | MsG0480018807.01.T01:intron | 30.0% |
| ! | TCCAATATCTACAATTTTGG+AGG | - | Chr4:10152703-10152722 | MsG0480018807.01.T01:intron | 30.0% |
| ! | TGTTGACCTTTTCTTCAATA+TGG | - | Chr4:10152266-10152285 | MsG0480018807.01.T01:intron | 30.0% |
| !! | GTAATAATATCAAGTTGAGC+TGG | - | Chr4:10153412-10153431 | MsG0480018807.01.T01:CDS | 30.0% |
| !! | TTTGGAATTGTTTCTACTCT+TGG | - | Chr4:10153497-10153516 | MsG0480018807.01.T01:five_prime_UTR | 30.0% |
| ACTTTCTTAGTGATTGTCGA+AGG | + | Chr4:10152900-10152919 | None:intergenic | 35.0% | |
| ATCTGGAAAGAGATGTTTGT+TGG | - | Chr4:10152029-10152048 | MsG0480018807.01.T01:CDS | 35.0% | |
| CTCCAAAATTACTGAGAAGA+AGG | + | Chr4:10153278-10153297 | None:intergenic | 35.0% | |
| GCCTCCAAAATTGTAGATAT+TGG | + | Chr4:10152707-10152726 | None:intergenic | 35.0% | |
| GTCAATATCTGTGTCATATC+AGG | + | Chr4:10152418-10152437 | None:intergenic | 35.0% | |
| TATGAAGCATAGACACTCAT+CGG | + | Chr4:10152554-10152573 | None:intergenic | 35.0% | |
| TTCTTTGAACCACAATTCAC+TGG | - | Chr4:10152201-10152220 | MsG0480018807.01.T01:intron | 35.0% | |
| TTGTGTTTCTCACATAGTTC+TGG | + | Chr4:10153152-10153171 | None:intergenic | 35.0% | |
| TTTCTCATCCATGCATCTTT+AGG | - | Chr4:10151813-10151832 | MsG0480018807.01.T01:three_prime_UTR | 35.0% | |
| ! | CACCTTCTTCTCAGTAATTT+TGG | - | Chr4:10153273-10153292 | MsG0480018807.01.T01:intron | 35.0% |
| ! | TGTTTGTTGGAGACTCAAAA+AGG | - | Chr4:10152042-10152061 | MsG0480018807.01.T01:CDS | 35.0% |
| !! | TAGTTTGCTTGAGAAAGACA+TGG | + | Chr4:10151769-10151788 | None:intergenic | 35.0% |
| !! | TCTCAGTAATTTTGGAGAGA+TGG | - | Chr4:10153281-10153300 | MsG0480018807.01.T01:intron | 35.0% |
| ACTTTCTCAGTAGCTTCATC+TGG | - | Chr4:10152012-10152031 | MsG0480018807.01.T01:CDS | 40.0% | |
| CAAAGTTTGCCAGTGAATTG+TGG | + | Chr4:10152213-10152232 | None:intergenic | 40.0% | |
| CAGCAGCCATATTGAAGAAA+AGG | + | Chr4:10152275-10152294 | None:intergenic | 40.0% | |
| GATTAGATGTGTCCTGATGT+TGG | + | Chr4:10152532-10152551 | None:intergenic | 40.0% | |
| TATGCTTCATAGCAACTCAC+CGG | - | Chr4:10152563-10152582 | MsG0480018807.01.T01:intron | 40.0% | |
| ! | CTTTTCTTCAATATGGCTGC+TGG | - | Chr4:10152273-10152292 | MsG0480018807.01.T01:intron | 40.0% |
| ! | GAGAAAGTACACACTTCCTT+TGG | + | Chr4:10152000-10152019 | None:intergenic | 40.0% |
| !! | GAGACTCAAAAAGGTGTCAA+TGG | - | Chr4:10152051-10152070 | MsG0480018807.01.T01:intron | 40.0% |
| !! | GCACTTTTTGTAACAAGCTG+GGG | + | Chr4:10152238-10152257 | None:intergenic | 40.0% |
| !! | GGCACTTTTTGTAACAAGCT+GGG | + | Chr4:10152239-10152258 | None:intergenic | 40.0% |
| !! | GGTGTTGATAGAAGTTCTGT+TGG | - | Chr4:10152162-10152181 | MsG0480018807.01.T01:intron | 40.0% |
| CATTGAGACAGACCAATGTG+TGG | - | Chr4:10152131-10152150 | MsG0480018807.01.T01:intron | 45.0% | |
| TCTTAGTGATTGTCGAAGGC+AGG | + | Chr4:10152896-10152915 | None:intergenic | 45.0% | |
| TTCAATATGGCTGCTGGAGA+GGG | - | Chr4:10152279-10152298 | MsG0480018807.01.T01:intron | 45.0% | |
| !! | GGGCACTTTTTGTAACAAGC+TGG | + | Chr4:10152240-10152259 | None:intergenic | 45.0% |
| !!! | AATATATAAATTTAATGTTT+TGG | + | Chr4:10153317-10153336 | None:intergenic | 5.0% |
| !!! | ATATTGATTTTTTTTTTAAT+CGG | + | Chr4:10152620-10152639 | None:intergenic | 5.0% |
| CACCACATGCTTCCACACAT+TGG | + | Chr4:10152146-10152165 | None:intergenic | 50.0% | |
| CTTCAATATGGCTGCTGGAG+AGG | - | Chr4:10152278-10152297 | MsG0480018807.01.T01:intron | 50.0% | |
| GGCATGTGAGGACTTACCAA+AGG | - | Chr4:10151981-10152000 | MsG0480018807.01.T01:CDS | 50.0% | |
| TGCAGCTGAAATGGCATGTG+AGG | - | Chr4:10151969-10151988 | MsG0480018807.01.T01:CDS | 50.0% | |
| TGCATTTGGTCCCGCTTCTT+CGG | - | Chr4:10153217-10153236 | MsG0480018807.01.T01:intron | 50.0% | |
| ! | GACCAATGTGTGGAAGCATG+TGG | - | Chr4:10152141-10152160 | MsG0480018807.01.T01:intron | 50.0% |
| !! | GTCCTCTGAAACCGAAGAAG+CGG | + | Chr4:10153231-10153250 | None:intergenic | 50.0% |
| !! | TCCTCTGAAACCGAAGAAGC+GGG | + | Chr4:10153230-10153249 | None:intergenic | 50.0% |
| ATGGTCGAGCTTGTGAGCTC+CGG | - | Chr4:10153191-10153210 | MsG0480018807.01.T01:CDS | 55.0% | |
| CACGACACAGGTCCAACATC+AGG | - | Chr4:10152517-10152536 | MsG0480018807.01.T01:intron | 55.0% | |
| GTCTGTGTCAGACACGACAC+AGG | - | Chr4:10152505-10152524 | MsG0480018807.01.T01:intron | 55.0% | |
| TCCCGCTTCTTCGGTTTCAG+AGG | - | Chr4:10153226-10153245 | MsG0480018807.01.T01:intron | 55.0% | |
| ! | TGAGAAGAAGGTGCAGCTGC+AGG | + | Chr4:10153266-10153285 | None:intergenic | 55.0% |
| AGCGGGACCAAATGCAGCTC+CGG | + | Chr4:10153213-10153232 | None:intergenic | 60.0% | |
| AGCTCGACCATAGCACGACG+AGG | + | Chr4:10153182-10153201 | None:intergenic | 60.0% | |
| GACCAACCCTCGTCGTGCTA+TGG | - | Chr4:10153172-10153191 | MsG0480018807.01.T01:CDS | 60.0% | |
| GACCATAGCACGACGAGGGT+TGG | + | Chr4:10153177-10153196 | None:intergenic | 60.0% | |
| GCTCGACCATAGCACGACGA+GGG | + | Chr4:10153181-10153200 | None:intergenic | 60.0% | |
| GTGAGCTCCGGAGCTGCATT+TGG | - | Chr4:10153203-10153222 | MsG0480018807.01.T01:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr4 | gene | 10151631 | 10153571 | 10151631 | ID=MsG0480018807.01;Name=MsG0480018807.01 |
| Chr4 | mRNA | 10151631 | 10153571 | 10151631 | ID=MsG0480018807.01.T01;Parent=MsG0480018807.01;Name=MsG0480018807.01.T01;_AED=0.49;_eAED=0.49;_QI=137|1|1|1|0.5|0.66|3|282|181 |
| Chr4 | exon | 10151631 | 10152064 | 10151631 | ID=MsG0480018807.01.T01:exon:2862;Parent=MsG0480018807.01.T01 |
| Chr4 | exon | 10152902 | 10153228 | 10152902 | ID=MsG0480018807.01.T01:exon:2861;Parent=MsG0480018807.01.T01 |
| Chr4 | exon | 10153368 | 10153571 | 10153368 | ID=MsG0480018807.01.T01:exon:2860;Parent=MsG0480018807.01.T01 |
| Chr4 | five_prime_UTR | 10153435 | 10153571 | 10153435 | ID=MsG0480018807.01.T01:five_prime_utr;Parent=MsG0480018807.01.T01 |
| Chr4 | CDS | 10153368 | 10153434 | 10153368 | ID=MsG0480018807.01.T01:cds;Parent=MsG0480018807.01.T01 |
| Chr4 | CDS | 10152902 | 10153228 | 10152902 | ID=MsG0480018807.01.T01:cds;Parent=MsG0480018807.01.T01 |
| Chr4 | CDS | 10151913 | 10152064 | 10151913 | ID=MsG0480018807.01.T01:cds;Parent=MsG0480018807.01.T01 |
| Chr4 | three_prime_UTR | 10151631 | 10151912 | 10151631 | ID=MsG0480018807.01.T01:three_prime_utr;Parent=MsG0480018807.01.T01 |
| Gene Sequence |
| Protein sequence |
