AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180004306.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004306.01.T01 MTR_1g076810 88.276 145 16 1 79 222 97 241 5.37e-88 273
MsG0180004306.01.T01 MTR_8g012090 50.595 168 54 4 65 226 74 218 2.41e-44 151
MsG0180004306.01.T01 MTR_5g097330 50.595 168 65 6 73 226 91 254 2.23e-41 145
MsG0180004306.01.T01 MTR_5g097350 47.368 152 68 6 79 226 104 247 3.42e-34 126
MsG0180004306.01.T01 MTR_7g111700 51.128 133 50 3 79 196 82 214 2.46e-32 120
MsG0180004306.01.T01 MTR_0129s0070 43.716 183 77 8 64 226 72 248 2.95e-31 118
MsG0180004306.01.T01 MTR_1g007450 44.571 175 78 7 66 226 77 246 4.38e-30 115
MsG0180004306.01.T01 MTR_0129s0120 42.623 183 79 8 64 226 72 248 2.36e-29 113
MsG0180004306.01.T01 MTR_6g078010 40.645 155 71 6 79 226 43 183 1.84e-28 110
MsG0180004306.01.T01 MTR_8g063440 39.759 166 84 6 69 226 81 238 1.15e-27 108
MsG0180004306.01.T01 MTR_1g007430 36.538 208 95 9 38 224 37 228 1.28e-27 107
MsG0180004306.01.T01 MTR_0129s0050 39.227 181 77 5 73 226 85 259 2.38e-27 108
MsG0180004306.01.T01 MTR_2g021950 39.759 166 89 5 69 226 86 248 2.58e-27 107
MsG0180004306.01.T01 MTR_6g090180 39.759 166 80 5 79 226 126 289 2.69e-27 108
MsG0180004306.01.T01 MTR_7g017040 41.935 155 76 5 79 226 93 240 3.68e-27 107
MsG0180004306.01.T01 MTR_5g096630 39.394 165 87 4 73 226 93 255 1.04e-26 106
MsG0180004306.01.T01 MTR_4g117550 42.405 158 74 6 80 226 99 250 1.06e-26 105
MsG0180004306.01.T01 MTR_2g022000 39.759 166 79 6 79 226 103 265 2.49e-26 105
MsG0180004306.01.T01 MTR_2g065860 40.123 162 85 5 73 226 83 240 3.89e-26 104
MsG0180004306.01.T01 MTR_7g017170 41.026 156 76 7 79 226 98 245 3.94e-26 104
MsG0180004306.01.T01 MTR_7g017130 41.026 156 76 7 79 226 98 245 4.26e-26 104
MsG0180004306.01.T01 MTR_7g069550 38.889 162 76 7 79 226 97 249 4.34e-26 104
MsG0180004306.01.T01 MTR_0054s0090 42.262 168 71 6 79 226 96 257 6.40e-26 104
MsG0180004306.01.T01 MTR_0134s0060 37.356 174 79 5 79 226 91 260 8.83e-26 103
MsG0180004306.01.T01 MTR_5g097220 39.247 186 76 7 73 226 81 261 8.93e-26 103
MsG0180004306.01.T01 MTR_0054s0100 42.604 169 71 6 79 226 96 259 1.36e-25 103
MsG0180004306.01.T01 MTR_8g039500 40.260 154 76 7 79 226 84 227 1.41e-25 102
MsG0180004306.01.T01 MTR_4g014370 39.080 174 78 7 80 226 94 266 2.04e-25 102
MsG0180004306.01.T01 MTR_7g016930 41.935 155 76 5 79 226 77 224 2.52e-25 101
MsG0180004306.01.T01 MTR_5g074800 37.805 164 77 4 79 226 40 194 2.99e-25 101
MsG0180004306.01.T01 MTR_5g022850 36.364 165 84 4 79 226 48 208 3.28e-25 101
MsG0180004306.01.T01 MTR_4g028660 37.654 162 80 4 79 226 94 248 3.71e-25 102
MsG0180004306.01.T01 MTR_4g027450 37.654 162 80 4 79 226 94 248 3.71e-25 102
MsG0180004306.01.T01 MTR_2g021800 38.636 176 87 6 69 226 94 266 3.87e-25 102
MsG0180004306.01.T01 MTR_4g028510 37.349 166 77 4 79 226 95 251 7.05e-25 102
MsG0180004306.01.T01 MTR_3g011120 43.949 157 68 9 79 226 92 237 7.16e-25 100
MsG0180004306.01.T01 MTR_1g007410 36.723 177 88 4 66 226 90 258 1.40e-24 100
MsG0180004306.01.T01 MTR_2g104340 37.349 166 77 6 79 226 87 243 2.93e-24 99.8
MsG0180004306.01.T01 MTR_2g065840 38.235 170 78 7 73 226 83 241 2.97e-24 99.4
MsG0180004306.01.T01 MTR_2g038680 39.655 174 70 8 79 226 98 262 3.05e-24 99.8
MsG0180004306.01.T01 MTR_8g467670 36.073 219 116 10 22 226 31 239 3.12e-24 99.4
MsG0180004306.01.T01 MTR_6g080680 40.828 169 81 6 68 226 87 246 4.01e-24 99.4
MsG0180004306.01.T01 MTR_2g034700 41.176 153 77 7 79 226 92 236 4.56e-24 98.6
MsG0180004306.01.T01 MTR_6g086825 39.157 166 71 7 79 226 150 303 4.98e-24 99.4
MsG0180004306.01.T01 MTR_5g098950 47.222 108 49 2 125 226 90 195 1.64e-23 95.5
MsG0180004306.01.T01 MTR_1g053510 35.981 214 92 12 49 226 60 264 2.22e-23 97.4
MsG0180004306.01.T01 MTR_5g024260 39.216 153 83 5 79 226 99 246 2.74e-23 97.1
MsG0180004306.01.T01 MTR_8g041270 31.250 192 95 5 56 226 78 253 2.86e-23 97.1
MsG0180004306.01.T01 MTR_4g102410 38.994 159 83 5 79 226 143 298 3.90e-23 97.1
MsG0180004306.01.T01 MTR_2g066170 36.471 170 89 8 66 226 77 236 6.46e-23 95.9
MsG0180004306.01.T01 MTR_4g130330 38.728 173 79 7 73 226 75 239 1.62e-22 94.7
MsG0180004306.01.T01 MTR_4g007940 34.591 159 82 7 79 226 35 182 1.98e-22 94.0
MsG0180004306.01.T01 MTR_6g079810 38.953 172 76 9 79 226 146 312 2.26e-22 94.7
MsG0180004306.01.T01 MTR_4g028750 36.970 165 78 6 79 226 94 249 2.55e-22 94.4
MsG0180004306.01.T01 MTR_6g090250 36.923 195 91 8 63 226 73 266 2.77e-22 94.4
MsG0180004306.01.T01 MTR_8g064890 38.547 179 90 8 60 226 77 247 4.55e-22 93.6
MsG0180004306.01.T01 MTR_4g055820 35.976 164 82 5 79 226 94 250 5.32e-22 92.8
MsG0180004306.01.T01 MTR_5g043605 40.816 147 74 6 82 226 54 189 7.72e-22 92.4
MsG0180004306.01.T01 MTR_8g013000 36.810 163 79 7 80 226 92 246 1.50e-21 92.0
MsG0180004306.01.T01 MTR_6g079790 39.610 154 77 5 84 226 2 150 1.94e-21 90.5
MsG0180004306.01.T01 MTR_1g050312 36.691 139 73 4 79 214 23 149 3.06e-21 89.7
MsG0180004306.01.T01 MTR_2g104260 33.333 180 91 7 69 226 80 252 6.86e-21 88.6
MsG0180004306.01.T01 MTR_2g066200 38.596 171 80 9 68 226 79 236 1.01e-20 89.7
MsG0180004306.01.T01 MTR_6g461660 38.182 165 81 7 79 226 95 255 1.05e-20 89.7
MsG0180004306.01.T01 MTR_7g027205 67.797 59 19 0 1 59 57 115 1.19e-20 85.9
MsG0180004306.01.T01 MTR_5g097820 38.125 160 77 8 79 226 103 252 2.03e-20 87.0
MsG0180004306.01.T01 MTR_4g028680 38.365 159 84 5 79 226 94 249 2.13e-20 89.0
MsG0180004306.01.T01 MTR_6g079770 34.483 174 84 6 79 226 96 265 6.05e-20 87.8
MsG0180004306.01.T01 MTR_5g037680 39.873 158 68 8 79 226 92 232 7.63e-20 87.8
MsG0180004306.01.T01 MTR_5g068490 40.411 146 64 7 82 226 9 132 1.17e-19 85.5
MsG0180004306.01.T01 MTR_8g046310 38.462 156 73 7 79 226 94 234 1.49e-19 86.3
MsG0180004306.01.T01 MTR_6g070880 36.601 153 75 6 79 211 110 260 2.87e-19 84.0
MsG0180004306.01.T01 MTR_6g071420 36.601 153 75 6 79 211 110 260 2.87e-19 84.0
MsG0180004306.01.T01 MTR_8g464770 41.176 153 76 8 79 226 92 235 3.60e-19 85.1
MsG0180004306.01.T01 MTR_5g092850 36.905 168 78 6 79 226 90 249 3.67e-19 85.5
MsG0180004306.01.T01 MTR_8g046200 35.000 200 68 10 79 226 90 279 4.11e-19 85.5
MsG0180004306.01.T01 MTR_2g021770 35.542 166 85 5 79 226 97 258 4.44e-19 85.1
MsG0180004306.01.T01 MTR_2g104280 32.558 215 103 9 34 226 58 252 6.89e-19 84.7
MsG0180004306.01.T01 MTR_5g064700 34.615 182 83 6 76 226 39 215 7.34e-19 84.3
MsG0180004306.01.T01 MTR_8g063330 33.918 171 88 8 68 226 85 242 1.22e-18 84.3
MsG0180004306.01.T01 MTR_0831s0010 34.615 156 79 6 79 226 131 271 1.39e-18 84.0
MsG0180004306.01.T01 MTR_2g066150 35.032 157 76 7 73 226 79 212 1.41e-18 83.6
MsG0180004306.01.T01 MTR_5g059430 36.420 162 82 6 80 226 117 272 1.21e-17 81.3
MsG0180004306.01.T01 MTR_5g037190 41.985 131 62 4 73 192 90 217 1.98e-17 79.0
MsG0180004306.01.T01 MTR_5g074850 36.000 175 77 9 79 226 111 277 3.08e-17 80.5
MsG0180004306.01.T01 MTR_7g079640 34.000 150 76 7 80 226 94 223 5.43e-17 79.0
MsG0180004306.01.T01 MTR_8g032980 30.769 182 87 5 80 226 88 265 8.50e-17 79.0
MsG0180004306.01.T01 MTR_4g016000 40.187 107 50 4 128 226 2 102 1.03e-16 76.3
MsG0180004306.01.T01 MTR_8g033140 35.976 164 64 5 79 205 99 258 1.17e-16 78.2
MsG0180004306.01.T01 MTR_5g091140 36.420 162 62 7 79 226 129 263 1.47e-16 78.2
MsG0180004306.01.T01 MTR_5g096910 36.646 161 80 10 79 226 96 247 1.49e-16 77.8
MsG0180004306.01.T01 MTR_5g075370 35.593 177 78 9 79 226 84 253 1.72e-16 78.2
MsG0180004306.01.T01 MTR_5g072060 37.594 133 62 3 79 195 84 211 2.24e-16 77.8
MsG0180004306.01.T01 MTR_5g069390 36.196 163 81 7 79 226 111 265 2.59e-16 77.4
MsG0180004306.01.T01 MTR_5g097680 32.787 183 86 7 79 226 97 277 3.62e-16 77.0
MsG0180004306.01.T01 MTR_5g023970 80.000 40 7 1 187 226 9 47 7.60e-16 73.6
MsG0180004306.01.T01 MTR_5g096900 32.418 182 102 9 45 226 81 241 9.07e-16 75.1
MsG0180004306.01.T01 MTR_5g092860 30.000 180 69 7 79 226 75 229 1.00e-15 75.5
MsG0180004306.01.T01 MTR_8g063370 32.877 146 89 6 86 226 105 246 3.22e-15 73.9
MsG0180004306.01.T01 MTR_2g064950 30.539 167 82 4 80 226 90 242 3.34e-15 73.9
MsG0180004306.01.T01 MTR_1g050308 30.534 131 80 3 79 205 112 235 4.35e-15 73.6
MsG0180004306.01.T01 MTR_6g087620 32.680 153 71 4 79 226 8 133 4.78e-15 72.8
MsG0180004306.01.T01 MTR_6g478230 30.189 212 117 7 27 226 49 241 8.18e-15 73.2
MsG0180004306.01.T01 MTR_5g076490 33.540 161 78 6 79 226 38 182 1.04e-14 72.4
MsG0180004306.01.T01 MTR_6g465360 34.783 138 61 4 80 191 142 276 3.91e-14 70.1
MsG0180004306.01.T01 MTR_6g009350 46.753 77 35 1 156 226 8 84 4.74e-14 68.6
MsG0180004306.01.T01 MTR_8g063350 29.936 157 94 7 77 226 52 199 4.82e-14 70.5
MsG0180004306.01.T01 MTR_8g033090 31.313 198 92 10 65 226 72 261 5.23e-14 70.9
MsG0180004306.01.T01 MTR_2g021860 39.785 93 52 3 83 175 16 104 1.26e-13 66.2
MsG0180004306.01.T01 MTR_8g073570 42.105 95 50 2 73 167 81 170 2.50e-13 66.2
MsG0180004306.01.T01 MTR_8g064790 40.336 119 59 6 60 174 75 185 8.20e-12 63.9
MsG0180004306.01.T01 MTR_1g098180 36.697 109 51 4 121 226 118 211 8.52e-12 63.9
MsG0180004306.01.T01 MTR_8g063310 26.797 153 99 7 78 226 97 240 2.24e-11 62.8
MsG0180004306.01.T01 MTR_1g047080 31.915 188 92 10 52 226 13 177 8.62e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004306.01.T01 AT2G13770 52.632 57 27 0 5 61 103 159 1.00e-11 63.9

Find 36 sgRNAs with CRISPR-Local

Find 87 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATGGTTCTGTTAGTGTTAA+TGG 0.129495 1:+76321230 MsG0180004306.01.T01:CDS
GAGTTTGAAATTGGTATTTA+TGG 0.217633 1:+76321212 MsG0180004306.01.T01:CDS
TGGTGAGAGGTTTGATAATA+AGG 0.283370 1:+76321157 MsG0180004306.01.T01:intron
TTTGACGAGGAGTTTGAAAT+TGG 0.302188 1:+76321203 MsG0180004306.01.T01:CDS
ATATTCGTGATTCGTCTTCA+TGG 0.306335 1:+76321377 MsG0180004306.01.T01:CDS
TCATATGCTAACCGTCTTAG+AGG 0.324723 1:-76321341 None:intergenic
ATGGTCGACGTTATCCCTTT+TGG 0.325643 1:+76321474 MsG0180004306.01.T01:CDS
GTGATTCGTCTTCATGGATT+TGG 0.327363 1:+76321383 MsG0180004306.01.T01:CDS
GTTATTCGTATGTTAGCATA+TGG 0.344522 1:+76320241 MsG0180004306.01.T01:CDS
CAAAGGTAGAGATGATTATA+AGG 0.362063 1:+76321412 MsG0180004306.01.T01:CDS
TGGATGGGTACAAAGGTAAA+AGG 0.372991 1:-76320343 None:intergenic
TGTATCATTTCATCATATAA+TGG 0.374199 1:+76321445 MsG0180004306.01.T01:CDS
AACTCCTCGTCAAATCGATT+TGG 0.379321 1:-76321194 None:intergenic
ATAATAAGGTCAAATTAGAT+TGG 0.392925 1:+76321171 MsG0180004306.01.T01:CDS
ATGCCTACACAATATAATAA+TGG 0.404894 1:+76321548 MsG0180004306.01.T01:CDS
TAGACAATATATCTCCCAAA+AGG 0.417162 1:-76321489 None:intergenic
GAGAGTTGTATTGTGGAATC+CGG 0.435602 1:+76321295 MsG0180004306.01.T01:CDS
CGAATGAGGGTTGATGCATC+TGG 0.437012 1:+76320181 MsG0180004306.01.T01:CDS
CGCAATTGTCAAAGATCAAA+CGG 0.462810 1:+76320309 MsG0180004306.01.T01:CDS
CGGATGGAGTGTGTCATTAG+TGG 0.480658 1:+76321591 MsG0180004306.01.T01:CDS
CGAATCACGAATATCTGATA+AGG 0.493077 1:-76321368 None:intergenic
AAATTCAGAGAGTTGTATTG+TGG 0.530640 1:+76321288 MsG0180004306.01.T01:CDS
AGACAATATATCTCCCAAAA+GGG 0.539400 1:-76321488 None:intergenic
CATGGATTTGGTTATGACAA+AGG 0.539683 1:+76321395 MsG0180004306.01.T01:CDS
ACATGGAATTCACTGGTAGC+CGG 0.560205 1:-76321314 None:intergenic
TGGATTATCTGCTGATAGCA+TGG 0.564657 1:+76320261 MsG0180004306.01.T01:CDS
TACACAATATAATAATGGCG+TGG 0.574598 1:+76321553 MsG0180004306.01.T01:CDS
CATCATATAATGGATGAAGA+TGG 0.575808 1:+76321455 MsG0180004306.01.T01:CDS
AGGAGCAACATGGAATTCAC+TGG 0.576883 1:-76321321 None:intergenic
TCCATGTTGCTCCTCTAAGA+CGG 0.579152 1:+76321330 MsG0180004306.01.T01:CDS
CGTGGGAGTTCAAGTATACA+CGG 0.607840 1:+76321571 MsG0180004306.01.T01:CDS
ACACAATATAATAATGGCGT+GGG 0.608470 1:+76321554 MsG0180004306.01.T01:CDS
ACGCCATTATTATATTGTGT+AGG 0.612775 1:-76321551 None:intergenic
GGAGTTCAAGTATACACGGA+TGG 0.640771 1:+76321575 MsG0180004306.01.T01:CDS
ACCGTCTTAGAGGAGCAACA+TGG 0.668212 1:-76321331 None:intergenic
TTGGCCAAATCGATTTGACG+AGG 0.688949 1:+76321190 MsG0180004306.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATTTTAGGTATTTTTTGA+AGG - Chr1:76320715-76320734 None:intergenic 15.0%
!!! TATTTTAGGTATTTTTTGAA+GGG - Chr1:76320714-76320733 None:intergenic 15.0%
!! AATAAAATCTTATGCAACAA+TGG - Chr1:76320366-76320385 None:intergenic 20.0%
!! AATCTCATCAAATTTATCTT+GGG - Chr1:76320441-76320460 None:intergenic 20.0%
!! ATAATAAGGTCAAATTAGAT+TGG + Chr1:76321171-76321190 MsG0180004306.01.T01:CDS 20.0%
!! ATTGTCTAAAAAGTAACTAT+TGG + Chr1:76321504-76321523 MsG0180004306.01.T01:CDS 20.0%
!! TGTATCATTTCATCATATAA+TGG + Chr1:76321445-76321464 MsG0180004306.01.T01:CDS 20.0%
!! TTTGTAATATGAATGATTGT+TGG - Chr1:76321058-76321077 None:intergenic 20.0%
!!! TATATATGCTGGAAATTTTT+AGG + Chr1:76320758-76320777 MsG0180004306.01.T01:intron 20.0%
!!! TTTTACAATGTTACATTCTA+AGG - Chr1:76320512-76320531 None:intergenic 20.0%
!!! TTTTTTGAAGGGAATATTTT+AGG - Chr1:76320703-76320722 None:intergenic 20.0%
! AATTGAGAGTGAATGTAAAT+AGG - Chr1:76320554-76320573 None:intergenic 25.0%
! AGAAACATGTTCATGAAAAA+AGG - Chr1:76321021-76321040 None:intergenic 25.0%
! ATGCCTACACAATATAATAA+TGG + Chr1:76321548-76321567 MsG0180004306.01.T01:CDS 25.0%
! CAATCTCATCAAATTTATCT+TGG - Chr1:76320442-76320461 None:intergenic 25.0%
! GAAACATGTTCATGAAAAAA+GGG - Chr1:76321020-76321039 None:intergenic 25.0%
! GATTGTTGGATAAGAAATTT+AGG - Chr1:76321044-76321063 None:intergenic 25.0%
! TCAAACTTAATTCTTTGGTT+AGG - Chr1:76320482-76320501 None:intergenic 25.0%
!! ATGATGAATATTTTCGAATG+AGG + Chr1:76320167-76320186 MsG0180004306.01.T01:CDS 25.0%
!! GAGTTTGAAATTGGTATTTA+TGG + Chr1:76321212-76321231 MsG0180004306.01.T01:CDS 25.0%
!! TGATGAATATTTTCGAATGA+GGG + Chr1:76320168-76320187 MsG0180004306.01.T01:CDS 25.0%
AAATCTTATGCAACAATGGA+TGG - Chr1:76320362-76320381 None:intergenic 30.0%
AAATTCAGAGAGTTGTATTG+TGG + Chr1:76321288-76321307 MsG0180004306.01.T01:CDS 30.0%
AATCGAAACAAAGATTTGAG+AGG - Chr1:76320958-76320977 None:intergenic 30.0%
AATCTTATGCAACAATGGAT+GGG - Chr1:76320361-76320380 None:intergenic 30.0%
ACACAATATAATAATGGCGT+GGG + Chr1:76321554-76321573 MsG0180004306.01.T01:CDS 30.0%
ACGCCATTATTATATTGTGT+AGG - Chr1:76321554-76321573 None:intergenic 30.0%
AGACAATATATCTCCCAAAA+GGG - Chr1:76321491-76321510 None:intergenic 30.0%
AGTTGCATACATAGCATATT+CGG + Chr1:76320593-76320612 MsG0180004306.01.T01:intron 30.0%
AGTTTAGAGATGGAGAAATT+AGG + Chr1:76320856-76320875 MsG0180004306.01.T01:intron 30.0%
CAAAGGTAGAGATGATTATA+AGG + Chr1:76321412-76321431 MsG0180004306.01.T01:CDS 30.0%
CGGATTCAAACTTAATTCTT+TGG - Chr1:76320487-76320506 None:intergenic 30.0%
GTTATTCGTATGTTAGCATA+TGG + Chr1:76320241-76320260 MsG0180004306.01.T01:CDS 30.0%
TACACAATATAATAATGGCG+TGG + Chr1:76321553-76321572 MsG0180004306.01.T01:CDS 30.0%
TAGACAATATATCTCCCAAA+AGG - Chr1:76321492-76321511 None:intergenic 30.0%
TCCAGCATATATATAGTATG+CGG - Chr1:76320751-76320770 None:intergenic 30.0%
! ACTGTTGCGCATAATATTTT+AGG - Chr1:76320728-76320747 None:intergenic 30.0%
! CAATGTTACATTCTAAGGAT+CGG - Chr1:76320507-76320526 None:intergenic 30.0%
! TATGGTTCTGTTAGTGTTAA+TGG + Chr1:76321230-76321249 MsG0180004306.01.T01:CDS 30.0%
! TCGATTTGAATCATGAATCT+GGG + Chr1:76321120-76321139 MsG0180004306.01.T01:intron 30.0%
!! CATCATATAATGGATGAAGA+TGG + Chr1:76321455-76321474 MsG0180004306.01.T01:CDS 30.0%
!!! TGCTGGAAATTTTTAGGTTT+TGG + Chr1:76320764-76320783 MsG0180004306.01.T01:intron 30.0%
AGGGAACATCATAATGTAAG+AGG - Chr1:76321094-76321113 None:intergenic 35.0%
ATATTCGTGATTCGTCTTCA+TGG + Chr1:76321377-76321396 MsG0180004306.01.T01:CDS 35.0%
ATGATTCAAATCGACATCCA+AGG - Chr1:76321114-76321133 None:intergenic 35.0%
CGAATCACGAATATCTGATA+AGG - Chr1:76321371-76321390 None:intergenic 35.0%
CGCAATTGTCAAAGATCAAA+CGG + Chr1:76320309-76320328 MsG0180004306.01.T01:CDS 35.0%
CTTACATTATGATGTTCCCT+TGG + Chr1:76321094-76321113 MsG0180004306.01.T01:intron 35.0%
TCCGCATACTATATATATGC+TGG + Chr1:76320747-76320766 MsG0180004306.01.T01:intron 35.0%
TGATTCAAATCGACATCCAA+GGG - Chr1:76321113-76321132 None:intergenic 35.0%
TTTGTTGCATACGCAAATCA+TGG + Chr1:76320977-76320996 MsG0180004306.01.T01:intron 35.0%
! ACAGTCGTGCATTTTTGTAA+TGG - Chr1:76320223-76320242 None:intergenic 35.0%
! CATATGTGATGATGTTGCTT+TGG + Chr1:76320915-76320934 MsG0180004306.01.T01:intron 35.0%
! CATGGATTTGGTTATGACAA+AGG + Chr1:76321395-76321414 MsG0180004306.01.T01:CDS 35.0%
! TGGTGAGAGGTTTGATAATA+AGG + Chr1:76321157-76321176 MsG0180004306.01.T01:intron 35.0%
! TTTGACGAGGAGTTTGAAAT+TGG + Chr1:76321203-76321222 MsG0180004306.01.T01:CDS 35.0%
!! GTCGATTTGAATCATGAATC+TGG + Chr1:76321119-76321138 MsG0180004306.01.T01:intron 35.0%
!!! GAATTCTTTGTTTTGCAGCA+TGG + Chr1:76321252-76321271 MsG0180004306.01.T01:CDS 35.0%
AACTCCTCGTCAAATCGATT+TGG - Chr1:76321197-76321216 None:intergenic 40.0%
AGTAATCTCGTTGCAGCAAT+TGG - Chr1:76320819-76320838 None:intergenic 40.0%
ATTGCTGCAACGAGATTACT+CGG + Chr1:76320819-76320838 MsG0180004306.01.T01:intron 40.0%
GAGAGTTGTATTGTGGAATC+CGG + Chr1:76321295-76321314 MsG0180004306.01.T01:CDS 40.0%
GCTTGAGTAGAGTTTAGAGA+TGG + Chr1:76320846-76320865 MsG0180004306.01.T01:intron 40.0%
GTAATCTCGTTGCAGCAATT+GGG - Chr1:76320818-76320837 None:intergenic 40.0%
GTGATTCGTCTTCATGGATT+TGG + Chr1:76321383-76321402 MsG0180004306.01.T01:CDS 40.0%
TCATATGCTAACCGTCTTAG+AGG - Chr1:76321344-76321363 None:intergenic 40.0%
TCTGGGTTGTATTCTCTTTC+TGG + Chr1:76321137-76321156 MsG0180004306.01.T01:intron 40.0%
TGGATGGGTACAAAGGTAAA+AGG - Chr1:76320346-76320365 None:intergenic 40.0%
TGGATTATCTGCTGATAGCA+TGG + Chr1:76320261-76320280 MsG0180004306.01.T01:CDS 40.0%
! TGTATTCTCTTTCTGGTGAG+AGG + Chr1:76321144-76321163 MsG0180004306.01.T01:intron 40.0%
ACATGGAATTCACTGGTAGC+CGG - Chr1:76321317-76321336 None:intergenic 45.0%
AGGAGCAACATGGAATTCAC+TGG - Chr1:76321324-76321343 None:intergenic 45.0%
CGTGGGAGTTCAAGTATACA+CGG + Chr1:76321571-76321590 MsG0180004306.01.T01:CDS 45.0%
GCAACAATGGATGGGTACAA+AGG - Chr1:76320353-76320372 None:intergenic 45.0%
GGAGTTCAAGTATACACGGA+TGG + Chr1:76321575-76321594 MsG0180004306.01.T01:CDS 45.0%
TATGTGATCGCAAACCCTGT+CGG - Chr1:76320899-76320918 None:intergenic 45.0%
! ATGGTCGACGTTATCCCTTT+TGG + Chr1:76321474-76321493 MsG0180004306.01.T01:CDS 45.0%
! TCCATGTTGCTCCTCTAAGA+CGG + Chr1:76321330-76321349 MsG0180004306.01.T01:CDS 45.0%
! TGGTCGACGTTATCCCTTTT+GGG + Chr1:76321475-76321494 MsG0180004306.01.T01:CDS 45.0%
!! TTGGCCAAATCGATTTGACG+AGG + Chr1:76321190-76321209 MsG0180004306.01.T01:CDS 45.0%
!!! TTTTGCAGCATGGAGTGTTG+AGG + Chr1:76321262-76321281 MsG0180004306.01.T01:CDS 45.0%
ACCGTCTTAGAGGAGCAACA+TGG - Chr1:76321334-76321353 None:intergenic 50.0%
TCTCGTTGCAGCAATTGGGT+TGG - Chr1:76320814-76320833 None:intergenic 50.0%
TGCCACAAGTACAACCGACA+GGG + Chr1:76320882-76320901 MsG0180004306.01.T01:intron 50.0%
TTGCCACAAGTACAACCGAC+AGG + Chr1:76320881-76320900 MsG0180004306.01.T01:intron 50.0%
! AACCCTGTCGGTTGTACTTG+TGG - Chr1:76320887-76320906 None:intergenic 50.0%
!! CGAATGAGGGTTGATGCATC+TGG + Chr1:76320181-76320200 MsG0180004306.01.T01:CDS 50.0%
Chromosome Type Strat End Strand Name
Chr1 gene 76320121 76321610 76320121 ID=MsG0180004306.01;Name=MsG0180004306.01
Chr1 mRNA 76320121 76321610 76320121 ID=MsG0180004306.01.T01;Parent=MsG0180004306.01;Name=MsG0180004306.01.T01;_AED=0.50;_eAED=0.50;_QI=0|0|0|1|1|1|2|0|226
Chr1 exon 76320121 76320354 76320121 ID=MsG0180004306.01.T01:exon:14789;Parent=MsG0180004306.01.T01
Chr1 exon 76321164 76321610 76321164 ID=MsG0180004306.01.T01:exon:14790;Parent=MsG0180004306.01.T01
Chr1 CDS 76320121 76320354 76320121 ID=MsG0180004306.01.T01:cds;Parent=MsG0180004306.01.T01
Chr1 CDS 76321164 76321610 76321164 ID=MsG0180004306.01.T01:cds;Parent=MsG0180004306.01.T01
Gene Sequence

>MsG0180004306.01.T01

ATGCATAAACATATGTTTCTTCGTATTGTTGAAGCTCTTGTTCAACATGATGAATATTTTCGAATGAGGGTTGATGCATCTGGTAGATCAAGTCTTTCACCATTACAAAAATGCACGACTGTTATTCGTATGTTAGCATATGGATTATCTGCTGATAGCATGGATGACTATATCAGATTTTCTTCATACGCAATTGTCAAAGATCAAACGGCTGACTACTTGCCTTTTACCTTTAGGTTTGATAATAAGGTCAAATTAGATTGGCCAAATCGATTTGACGAGGAGTTTGAAATTGGTATTTATGGTTCTGTTAGTGTTAATGGAATTCTTTGTTTTGCAGCATGGAGTGTTGAGGAAGAAATTCAGAGAGTTGTATTGTGGAATCCGGCTACCAGTGAATTCCATGTTGCTCCTCTAAGACGGTTAGCATATGAAAGTCCTTATCAGATATTCGTGATTCGTCTTCATGGATTTGGTTATGACAAAGGTAGAGATGATTATAAGGTGATTCGACATGTATCATTTCATCATATAATGGATGAAGATGGTCGACGTTATCCCTTTTGGGAGATATATTGTCTAAAAAGTAACTATTGGAGACAACTTGATCTTGATCATATGCCTACACAATATAATAATGGCGTGGGAGTTCAAGTATACACGGATGGAGTGTGTCATTAG
Protein sequence

>MsG0180004306.01.T01

MHKHMFLRIVEALVQHDEYFRMRVDASGRSSLSPLQKCTTVIRMLAYGLSADSMDDYIRFSSYAIVKDQTADYLPFTFRFDNKVKLDWPNRFDEEFEIGIYGSVSVNGILCFAAWSVEEEIQRVVLWNPATSEFHVAPLRRLAYESPYQIFVIRLHGFGYDKGRDDYKVIRHVSFHHIMDEDGRRYPFWEIYCLKSNYWRQLDLDHMPTQYNNGVGVQVYTDGVCH*