AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780036498.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780036498.01.T01 MTR_3g448730 45.000 80 43 1 271 350 102 180 2.68e-18 83.2
MsG0780036498.01.T01 MTR_8g059225 43.529 85 47 1 266 350 85 168 9.12e-18 80.5
MsG0780036498.01.T01 MTR_6g472230 44.578 83 46 0 268 350 84 166 1.01e-14 76.3
MsG0780036498.01.T01 MTR_4g007210 56.000 50 22 0 301 350 340 389 1.98e-12 68.2
MsG0780036498.01.T01 MTR_3g093120 36.145 83 53 0 268 350 403 485 2.60e-12 68.2
MsG0780036498.01.T01 MTR_8g018120 40.196 102 50 3 243 336 106 204 4.02e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 76 sgRNAs with CRISPR-Local

Find 218 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAAAGAACCCTGTGCTTCT+TGG 0.281880 7:-8912181 MsG0780036498.01.T01:CDS
TAAGGAGTTTAAGAAATCTA+TGG 0.298377 7:-8912878 MsG0780036498.01.T01:intron
TCTGTGCTTGTCAAAGTGTT+TGG 0.318539 7:-8912288 MsG0780036498.01.T01:CDS
TCATCTAAGAAGATGGTAAC+AGG 0.324766 7:-8914581 MsG0780036498.01.T01:intron
TCTAGGAATCCTATTGCTCC+TGG 0.334836 7:-8912711 MsG0780036498.01.T01:CDS
TAACAGGGCTGCCGGGAATA+AGG 0.343297 7:-8914565 MsG0780036498.01.T01:CDS
TAGCTCTATTGTTCCATCAT+TGG 0.350194 7:+8912109 None:intergenic
ATGAGAAGAGTGCTAAGATT+TGG 0.361199 7:-8915043 MsG0780036498.01.T01:CDS
TTGCTTGGTGTCCTTATTCC+CGG 0.369445 7:+8914554 None:intergenic
AAAACAAAGTTGAATGAGAA+TGG 0.372608 7:-8913355 MsG0780036498.01.T01:CDS
GTTTGTTTCCTGTCATGTAA+TGG 0.396995 7:+8915000 None:intergenic
CGAAGAGTTCGCGAGAAACT+TGG 0.397765 7:-8912262 MsG0780036498.01.T01:CDS
AAACTTGGTCACACTCAATC+TGG 0.400078 7:-8912247 MsG0780036498.01.T01:CDS
CTCCGTGATCTTTCCAATGA+TGG 0.400604 7:-8912122 MsG0780036498.01.T01:CDS
CAATCCCTTCCCCACTTGCT+TGG 0.401853 7:+8914539 None:intergenic
TTGGGAGTTGACTATATTAC+CGG 0.410465 7:-8913413 MsG0780036498.01.T01:CDS
ACAAAGTATAAGCAAATTGT+TGG 0.420281 7:-8912645 MsG0780036498.01.T01:CDS
CAATAGAGAATAATAATACT+TGG 0.420459 7:-8913432 MsG0780036498.01.T01:CDS
GGGTGAGACAACCACCAGTA+TGG 0.436283 7:-8913602 MsG0780036498.01.T01:CDS
AACAGAAGAAATGCTCCTAA+TGG 0.443725 7:-8915084 MsG0780036498.01.T01:CDS
AAAGATTTCGTGAGTGGAGA+AGG 0.449589 7:-8913576 MsG0780036498.01.T01:CDS
AACTTGCACCCAGGAGCAAT+AGG 0.452081 7:+8912702 None:intergenic
ACGAAATCTTTCATCCATAC+TGG 0.457686 7:+8913588 None:intergenic
GGAAAGATGCACTATTTCCT+TGG 0.462153 7:-8912829 MsG0780036498.01.T01:CDS
AAGCTGTCAAAAGTGAGAAA+TGG 0.471998 7:-8913483 MsG0780036498.01.T01:CDS
GTTTAAGAAATCTATGGAAA+AGG 0.478719 7:-8912872 MsG0780036498.01.T01:CDS
CACACTCGTCATGAGCCATT+AGG 0.482057 7:+8915069 None:intergenic
GAAAGATCACGGAGAGGAAG+TGG 0.484927 7:+8912131 None:intergenic
TGGGGAAGGGATTGTGTCAT+GGG 0.490806 7:-8914530 MsG0780036498.01.T01:intron
CTTAATACATACATCAGATC+AGG 0.492075 7:+8912594 None:intergenic
GAAGATGGTAACAGGGCTGC+CGG 0.493656 7:-8914573 MsG0780036498.01.T01:CDS
GGACACCAAGCAAGTGGGGA+AGG 0.496118 7:-8914544 MsG0780036498.01.T01:CDS
CATCCAGAGGCTCTAGAAGA+AGG 0.512654 7:-8913627 MsG0780036498.01.T01:intron
TGTCATGTAATGGCTGCATC+CGG 0.516741 7:+8915010 None:intergenic
AAGATTTGGTTTCTTGACTC+CGG 0.516770 7:-8915029 MsG0780036498.01.T01:CDS
CTAGGAATCCTATTGCTCCT+GGG 0.518891 7:-8912710 MsG0780036498.01.T01:CDS
CTTGTTAGAAAGGTTTGGCA+TGG 0.522884 7:-8912747 MsG0780036498.01.T01:intron
GTGGGGAAGGGATTGTGTCA+TGG 0.525529 7:-8914531 MsG0780036498.01.T01:CDS
CAGAGGCTCTAGAAGAAGGA+AGG 0.528528 7:-8913623 MsG0780036498.01.T01:CDS
GAATTTAACATGTCAGACCT+TGG 0.529086 7:-8912850 MsG0780036498.01.T01:CDS
AAGATTTCGTGAGTGGAGAA+GGG 0.532474 7:-8913575 MsG0780036498.01.T01:CDS
GTTCTCGACTACAACCATCT+TGG 0.546271 7:+8914920 None:intergenic
ATGGAGAAAAGTATTTGTCT+AGG 0.550584 7:-8912728 MsG0780036498.01.T01:CDS
TTAGTTCAGGTGCAGTCTCA+TGG 0.552611 7:-8912375 MsG0780036498.01.T01:intron
TTCCATCATTGGAAAGATCA+CGG 0.558437 7:+8912120 None:intergenic
TATCAACAATCTGTCAAGCT+CGG 0.558676 7:-8914951 MsG0780036498.01.T01:CDS
AAGTTGATTAAAGATGAAAA+TGG 0.558684 7:-8912684 MsG0780036498.01.T01:CDS
GACACCAAGCAAGTGGGGAA+GGG 0.560438 7:-8914543 MsG0780036498.01.T01:CDS
GGATGCAGCCATTACATGAC+AGG 0.561165 7:-8915008 MsG0780036498.01.T01:CDS
TTGCTACGACCAAGAAGCAC+AGG 0.562398 7:+8912172 None:intergenic
AACACTTTGACAAGCACAGA+AGG 0.563304 7:+8912291 None:intergenic
AAGATGGTAACAGGGCTGCC+GGG 0.571263 7:-8914572 MsG0780036498.01.T01:CDS
AGAGGCTCTAGAAGAAGGAA+GGG 0.575607 7:-8913622 MsG0780036498.01.T01:CDS
CTGTCAAAAGTGAGAAATGG+AGG 0.578385 7:-8913480 MsG0780036498.01.T01:CDS
TATGAATTACTTCAACTCCA+AGG 0.580636 7:+8912812 None:intergenic
AGATGAAAATGGTGTGAAGG+TGG 0.589639 7:-8912673 MsG0780036498.01.T01:CDS
GCTCGGAAACAACTCCAAGA+TGG 0.594097 7:-8914934 MsG0780036498.01.T01:CDS
GAATAAGGACACCAAGCAAG+TGG 0.594579 7:-8914550 MsG0780036498.01.T01:CDS
TGGATGAAAGATTTCGTGAG+TGG 0.601121 7:-8913582 MsG0780036498.01.T01:CDS
GAGTTGACTATATTACCGGC+AGG 0.602845 7:-8913409 MsG0780036498.01.T01:CDS
CATCTAAGAAGATGGTAACA+GGG 0.604563 7:-8914580 MsG0780036498.01.T01:intron
GGAAATAGTGCATCTTTCCA+AGG 0.605011 7:+8912833 None:intergenic
AATAGAGAATAATAATACTT+GGG 0.608223 7:-8913431 MsG0780036498.01.T01:CDS
TCTTTAATCAACTTGCACCC+AGG 0.612167 7:+8912693 None:intergenic
GTTGTCGATAAAGTAACCAC+CGG 0.615397 7:+8912337 None:intergenic
AAGATGGTTGTAGTCGAGAA+CGG 0.616266 7:-8914918 MsG0780036498.01.T01:intron
ATACATCAGATCAGGTCTTG+TGG 0.619762 7:+8912602 None:intergenic
AAATCTTTCATCCATACTGG+TGG 0.627448 7:+8913591 None:intergenic
GATTGCAATGAATAATGAGA+TGG 0.628627 7:-8913458 MsG0780036498.01.T01:CDS
AATAAGGACACCAAGCAAGT+GGG 0.628768 7:-8914549 MsG0780036498.01.T01:CDS
TAAAGATGAAAATGGTGTGA+AGG 0.631188 7:-8912676 MsG0780036498.01.T01:CDS
AAAGTTGAATGAGAATGGAG+AGG 0.657929 7:-8913350 MsG0780036498.01.T01:intron
ATAAGGACACCAAGCAAGTG+GGG 0.663725 7:-8914548 MsG0780036498.01.T01:CDS
TGCTACGACCAAGAAGCACA+GGG 0.672177 7:+8912173 None:intergenic
ACATGACAGGAAACAAACAG+TGG 0.749395 7:-8914995 MsG0780036498.01.T01:CDS
TCATTGGAAAGATCACGGAG+AGG 0.758440 7:+8912125 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CATTTAAAAATTTAAAATCT+TGG - Chr7:8912916-8912935 MsG0780036498.01.T01:intron 10.0%
!! AATAGAGAATAATAATACTT+GGG - Chr7:8913796-8913815 MsG0780036498.01.T01:intron 15.0%
!! AAAAAACAACTTGATTAACT+TGG - Chr7:8912398-8912417 MsG0780036498.01.T01:intron 20.0%
!! AAAATGAATTGAATCTTTAG+AGG + Chr7:8913001-8913020 None:intergenic 20.0%
!! AAATCAGACTATTATGAATA+TGG - Chr7:8913094-8913113 MsG0780036498.01.T01:intron 20.0%
!! AGAAATCAAGTATATTAGTT+GGG - Chr7:8913482-8913501 MsG0780036498.01.T01:CDS 20.0%
!! CAATAGAGAATAATAATACT+TGG - Chr7:8913795-8913814 MsG0780036498.01.T01:intron 20.0%
!! GTAATGATGAAATATGTTTA+AGG - Chr7:8914331-8914350 MsG0780036498.01.T01:intron 20.0%
!!! AAGTTGATTAAAGATGAAAA+TGG - Chr7:8914543-8914562 MsG0780036498.01.T01:CDS 20.0%
!!! ACTTTAAAATAATGAACTGA+TGG + Chr7:8913258-8913277 None:intergenic 20.0%
!!! GTTCATTATTTTAAAGTCTT+TGG - Chr7:8913261-8913280 MsG0780036498.01.T01:intron 20.0%
!!! TTGTTTTAAAAATCCATTTG+AGG + Chr7:8913859-8913878 None:intergenic 20.0%
! AAAACAAAGTTGAATGAGAA+TGG - Chr7:8913872-8913891 MsG0780036498.01.T01:intron 25.0%
! AACTAAGCATAAAACATATC+CGG + Chr7:8914838-8914857 None:intergenic 25.0%
! AAGAAAAACGAAAATTCAGA+AGG - Chr7:8913545-8913564 MsG0780036498.01.T01:CDS 25.0%
! AATATTAGATTGCATGCTAA+TGG - Chr7:8912333-8912352 MsG0780036498.01.T01:CDS 25.0%
! ACAAAGTATAAGCAAATTGT+TGG - Chr7:8914582-8914601 MsG0780036498.01.T01:intron 25.0%
! AGTTGAAGTAATTCATAATG+AGG - Chr7:8914421-8914440 MsG0780036498.01.T01:intron 25.0%
! ATCAAAAAGTCTATATGCTT+TGG + Chr7:8913378-8913397 None:intergenic 25.0%
! ATGTATTAAGTCTAATTAGC+AGG - Chr7:8914646-8914665 MsG0780036498.01.T01:intron 25.0%
! ATTTGGGGATTATGTATAAA+GGG - Chr7:8914741-8914760 MsG0780036498.01.T01:intron 25.0%
! CAGAAATCAAGTATATTAGT+TGG - Chr7:8913481-8913500 MsG0780036498.01.T01:CDS 25.0%
! GAAATCAAGTATATTAGTTG+GGG - Chr7:8913483-8913502 MsG0780036498.01.T01:CDS 25.0%
! GAAGGAATTTATATTTGTCA+AGG - Chr7:8914443-8914462 MsG0780036498.01.T01:intron 25.0%
! GTTTAAGAAATCTATGGAAA+AGG - Chr7:8914355-8914374 MsG0780036498.01.T01:intron 25.0%
! TAAGGAGTTTAAGAAATCTA+TGG - Chr7:8914349-8914368 MsG0780036498.01.T01:intron 25.0%
! TATTTGGGGATTATGTATAA+AGG - Chr7:8914740-8914759 MsG0780036498.01.T01:intron 25.0%
! TGTGATGATTTAATATTCAC+TGG - Chr7:8914309-8914328 MsG0780036498.01.T01:intron 25.0%
!! ATATGTTTTATGCTTAGTTC+AGG - Chr7:8914839-8914858 MsG0780036498.01.T01:intron 25.0%
!!! ATCAAGTTGTTTTTTAACTC+AGG + Chr7:8912393-8912412 None:intergenic 25.0%
AAAAACGAAAATTCAGAAGG+TGG - Chr7:8913548-8913567 MsG0780036498.01.T01:CDS 30.0%
AAACTCTTCATCTAAGAAGA+TGG - Chr7:8912639-8912658 MsG0780036498.01.T01:CDS 30.0%
AAAGGATACTCTCAACAATA+TGG - Chr7:8913928-8913947 MsG0780036498.01.T01:intron 30.0%
AAATCCTTCCTTTGTGAAAT+AGG + Chr7:8914216-8914235 None:intergenic 30.0%
AATCTTGGTTGAGAAAGAAT+AGG - Chr7:8912931-8912950 MsG0780036498.01.T01:intron 30.0%
ACGATTACAGTAGAAAGATT+GGG - Chr7:8912857-8912876 MsG0780036498.01.T01:CDS 30.0%
ATATATTAGAGTGCACCAAT+TGG + Chr7:8912780-8912799 None:intergenic 30.0%
ATCACACATTGAAAGATCTT+GGG + Chr7:8913335-8913354 None:intergenic 30.0%
ATCTCAATGGCACAATTATT+TGG - Chr7:8914724-8914743 MsG0780036498.01.T01:intron 30.0%
ATCTTGGTTGAGAAAGAATA+GGG - Chr7:8912932-8912951 MsG0780036498.01.T01:intron 30.0%
ATCTTTCAATGTGTGATGTT+AGG - Chr7:8913338-8913357 MsG0780036498.01.T01:intron 30.0%
CTTAATACATACATCAGATC+AGG + Chr7:8914636-8914655 None:intergenic 30.0%
GAAGTAATTCATAATGAGGA+AGG - Chr7:8914425-8914444 MsG0780036498.01.T01:intron 30.0%
GATTGCAATGAATAATGAGA+TGG - Chr7:8913769-8913788 MsG0780036498.01.T01:intron 30.0%
TAAAGATGAAAATGGTGTGA+AGG - Chr7:8914551-8914570 MsG0780036498.01.T01:CDS 30.0%
TATGAATTACTTCAACTCCA+AGG + Chr7:8914418-8914437 None:intergenic 30.0%
TCTCAATGGCACAATTATTT+GGG - Chr7:8914725-8914744 MsG0780036498.01.T01:intron 30.0%
TCTTTCAATGTGTGATGTTA+GGG - Chr7:8913339-8913358 MsG0780036498.01.T01:intron 30.0%
TTATGGCCATCTAAATTTCA+AGG - Chr7:8912611-8912630 MsG0780036498.01.T01:CDS 30.0%
TTCACTCAACTTCACAAATA+AGG + Chr7:8914261-8914280 None:intergenic 30.0%
TTCAGTCCTTGAAATTTAGA+TGG + Chr7:8912620-8912639 None:intergenic 30.0%
! AATTCATTTTGCAGCTTACA+TGG - Chr7:8913011-8913030 MsG0780036498.01.T01:intron 30.0%
! GAAGGTGTATAAATTGAGAA+GGG - Chr7:8914139-8914158 MsG0780036498.01.T01:intron 30.0%
!! AGATGATAGAAAAGTACTTC+CGG - Chr7:8914816-8914835 MsG0780036498.01.T01:intron 30.0%
!! ATATTGTTGAGAGTATCCTT+TGG + Chr7:8913929-8913948 None:intergenic 30.0%
!! ATGGAGAAAAGTATTTGTCT+AGG - Chr7:8914499-8914518 MsG0780036498.01.T01:intron 30.0%
!! ATGTAACTGACTTGTTAGAA+AGG - Chr7:8914470-8914489 MsG0780036498.01.T01:intron 30.0%
!! GAGTTTCTGTTGATTCAAAA+TGG - Chr7:8912438-8912457 MsG0780036498.01.T01:intron 30.0%
!! TTTTGAAGAAAATGAGTGCT+GGG - Chr7:8913435-8913454 MsG0780036498.01.T01:CDS 30.0%
!! TTTTTGAAGAAAATGAGTGC+TGG - Chr7:8913434-8913453 MsG0780036498.01.T01:CDS 30.0%
AAAGTTGAATGAGAATGGAG+AGG - Chr7:8913877-8913896 MsG0780036498.01.T01:intron 35.0%
AAATCTTTCATCCATACTGG+TGG + Chr7:8913639-8913658 None:intergenic 35.0%
AACAGAAGAAATGCTCCTAA+TGG - Chr7:8912143-8912162 MsG0780036498.01.T01:CDS 35.0%
AAGCTGTCAAAAGTGAGAAA+TGG - Chr7:8913744-8913763 MsG0780036498.01.T01:intron 35.0%
ACAAATAAGGTGTGCTCATA+TGG + Chr7:8914248-8914267 None:intergenic 35.0%
ACGAAATCTTTCATCCATAC+TGG + Chr7:8913642-8913661 None:intergenic 35.0%
ACTTGGACAATTGATAGAGA+AGG - Chr7:8912415-8912434 MsG0780036498.01.T01:intron 35.0%
AGCACAAGTTTATGTGAAGA+AGG - Chr7:8914106-8914125 MsG0780036498.01.T01:intron 35.0%
CATCACACATTGAAAGATCT+TGG + Chr7:8913336-8913355 None:intergenic 35.0%
CATCTAAGAAGATGGTAACA+GGG - Chr7:8912647-8912666 MsG0780036498.01.T01:CDS 35.0%
CATGTTGAAACTTGAGACAT+CGG + Chr7:8912547-8912566 None:intergenic 35.0%
CATTGAAGCCTATTTCACAA+AGG - Chr7:8914205-8914224 MsG0780036498.01.T01:intron 35.0%
CTCAATGGCACAATTATTTG+GGG - Chr7:8914726-8914745 MsG0780036498.01.T01:intron 35.0%
CTTGGACAATTGATAGAGAA+GGG - Chr7:8912416-8912435 MsG0780036498.01.T01:intron 35.0%
CTTTCAATGTGTGATGTTAG+GGG - Chr7:8913340-8913359 MsG0780036498.01.T01:intron 35.0%
CTTTGCTAATCACAATACGT+TGG + Chr7:8913408-8913427 None:intergenic 35.0%
GAATTTAACATGTCAGACCT+TGG - Chr7:8914377-8914396 MsG0780036498.01.T01:intron 35.0%
GACGATTACAGTAGAAAGAT+TGG - Chr7:8912856-8912875 MsG0780036498.01.T01:CDS 35.0%
GCACAAGTTTATGTGAAGAA+GGG - Chr7:8914107-8914126 MsG0780036498.01.T01:intron 35.0%
GTTTGTTTCCTGTCATGTAA+TGG + Chr7:8912230-8912249 None:intergenic 35.0%
TACACAGATAGTGATTATGC+AGG - Chr7:8914787-8914806 MsG0780036498.01.T01:intron 35.0%
TATCAACAATCTGTCAAGCT+CGG - Chr7:8912276-8912295 MsG0780036498.01.T01:CDS 35.0%
TATGCCAAGTGAAAAGTTTG+TGG - Chr7:8912737-8912756 MsG0780036498.01.T01:CDS 35.0%
TCAGAAGGTGGAGAAAAAAT+GGG - Chr7:8913560-8913579 MsG0780036498.01.T01:CDS 35.0%
TCATCTAAGAAGATGGTAAC+AGG - Chr7:8912646-8912665 MsG0780036498.01.T01:CDS 35.0%
TCGGAAGATGAAAACATCTT+TGG - Chr7:8912580-8912599 MsG0780036498.01.T01:intron 35.0%
TCTTAAAGTCATTCATCCAG+AGG - Chr7:8913587-8913606 MsG0780036498.01.T01:CDS 35.0%
TCTTGGTTGAGAAAGAATAG+GGG - Chr7:8912933-8912952 MsG0780036498.01.T01:intron 35.0%
TGGTGCACTCTAATATATGT+GGG - Chr7:8912782-8912801 MsG0780036498.01.T01:intron 35.0%
TTCAGAAGGTGGAGAAAAAA+TGG - Chr7:8913559-8913578 MsG0780036498.01.T01:CDS 35.0%
TTCCATCATTGGAAAGATCA+CGG + Chr7:8915110-8915129 None:intergenic 35.0%
TTGGGAGTTGACTATATTAC+CGG - Chr7:8913814-8913833 MsG0780036498.01.T01:intron 35.0%
TTGGTGCACTCTAATATATG+TGG - Chr7:8912781-8912800 MsG0780036498.01.T01:intron 35.0%
TTGTGAAATAGGCTTCAATG+CGG + Chr7:8914205-8914224 None:intergenic 35.0%
TTTGTGAAGTTGAGTGAAAG+AGG - Chr7:8914263-8914282 MsG0780036498.01.T01:intron 35.0%
! AAGATTTGGTTTCTTGACTC+CGG - Chr7:8912198-8912217 MsG0780036498.01.T01:CDS 35.0%
! AAGCGCTTTTAACATCTAAC+TGG + Chr7:8914047-8914066 None:intergenic 35.0%
! AGAGTACTCAGATATCTCAA+TGG - Chr7:8914711-8914730 MsG0780036498.01.T01:intron 35.0%
! CAAAAACTATTGGCCTCAAA+TGG - Chr7:8913843-8913862 MsG0780036498.01.T01:intron 35.0%
! CGAAGGTGTATAAATTGAGA+AGG - Chr7:8914138-8914157 MsG0780036498.01.T01:intron 35.0%
! CTTTTTCCACTACTTGATGA+GGG + Chr7:8912817-8912836 None:intergenic 35.0%
! GCTTTTACACCTCAACAAAA+CGG - Chr7:8913056-8913075 MsG0780036498.01.T01:intron 35.0%
! GTACACATTCCATCCTTTTT+GGG + Chr7:8914025-8914044 None:intergenic 35.0%
!! AAATTGAGAAGGGCATTGTA+TGG - Chr7:8914149-8914168 MsG0780036498.01.T01:intron 35.0%
!! AATCACAATACGTTGGTAGT+TGG + Chr7:8913401-8913420 None:intergenic 35.0%
!! ACTGACTTGTTAGAAAGGTT+TGG - Chr7:8914475-8914494 MsG0780036498.01.T01:intron 35.0%
!! ATGAGAAGAGTGCTAAGATT+TGG - Chr7:8912184-8912203 MsG0780036498.01.T01:CDS 35.0%
!! TTCGTTTTTCTTTCACTGTG+AGG + Chr7:8913537-8913556 None:intergenic 35.0%
AAACTTGGTCACACTCAATC+TGG - Chr7:8914980-8914999 MsG0780036498.01.T01:CDS 40.0%
AAAGATTTCGTGAGTGGAGA+AGG - Chr7:8913651-8913670 MsG0780036498.01.T01:intron 40.0%
AACACTTTGACAAGCACAGA+AGG + Chr7:8914939-8914958 None:intergenic 40.0%
AACATGCTTCAAGACTGTCT+CGG - Chr7:8912561-8912580 MsG0780036498.01.T01:intron 40.0%
AAGAGCGATTACCATTCGAA+TGG + Chr7:8913998-8914017 None:intergenic 40.0%
AAGATGGTTGTAGTCGAGAA+CGG - Chr7:8912309-8912328 MsG0780036498.01.T01:CDS 40.0%
AAGATTTCGTGAGTGGAGAA+GGG - Chr7:8913652-8913671 MsG0780036498.01.T01:intron 40.0%
AATAAGGACACCAAGCAAGT+GGG - Chr7:8912678-8912697 MsG0780036498.01.T01:CDS 40.0%
ACATGACAGGAAACAAACAG+TGG - Chr7:8912232-8912251 MsG0780036498.01.T01:CDS 40.0%
AGATGAAAATGGTGTGAAGG+TGG - Chr7:8914554-8914573 MsG0780036498.01.T01:CDS 40.0%
AGCTACACACAAACTCCAAT+TGG - Chr7:8912762-8912781 MsG0780036498.01.T01:intron 40.0%
ATACATCAGATCAGGTCTTG+TGG + Chr7:8914628-8914647 None:intergenic 40.0%
ATGGTCGTCTAAAAAGCAAC+CGG - Chr7:8914871-8914890 MsG0780036498.01.T01:intron 40.0%
ATTTGCACCAGTGGCTATAT+AGG - Chr7:8913969-8913988 MsG0780036498.01.T01:intron 40.0%
CGTTGCTATCACTCAAATGA+TGG - Chr7:8912468-8912487 MsG0780036498.01.T01:intron 40.0%
CTGTCAAAAGTGAGAAATGG+AGG - Chr7:8913747-8913766 MsG0780036498.01.T01:intron 40.0%
CTTGTTAGAAAGGTTTGGCA+TGG - Chr7:8914480-8914499 MsG0780036498.01.T01:intron 40.0%
GAAGCCTATTTCACAAAGGA+AGG - Chr7:8914209-8914228 MsG0780036498.01.T01:intron 40.0%
GGAAAGATGCACTATTTCCT+TGG - Chr7:8914398-8914417 MsG0780036498.01.T01:intron 40.0%
GGAAATAGTGCATCTTTCCA+AGG + Chr7:8914397-8914416 None:intergenic 40.0%
GGGGATTATGTATAAAGGGA+TGG - Chr7:8914745-8914764 MsG0780036498.01.T01:intron 40.0%
GTTGTCGATAAAGTAACCAC+CGG + Chr7:8914893-8914912 None:intergenic 40.0%
TATCTTTCACTGCCAAGGTT+GGG + Chr7:8913205-8913224 None:intergenic 40.0%
TCTTTAATCAACTTGCACCC+AGG + Chr7:8914537-8914556 None:intergenic 40.0%
TGGATGAAAGATTTCGTGAG+TGG - Chr7:8913645-8913664 MsG0780036498.01.T01:intron 40.0%
TGTCTTATCTTTCACTGCCA+AGG + Chr7:8913210-8913229 None:intergenic 40.0%
TTATCTTTCACTGCCAAGGT+TGG + Chr7:8913206-8913225 None:intergenic 40.0%
TTTGCACCAGTGGCTATATA+GGG - Chr7:8913970-8913989 MsG0780036498.01.T01:intron 40.0%
! ATGGAGAGGTTGAAAGTACA+AGG - Chr7:8913891-8913910 MsG0780036498.01.T01:intron 40.0%
! CATTGAAGTATTTGCACCAG+TGG - Chr7:8913960-8913979 MsG0780036498.01.T01:intron 40.0%
! CCTCATCAAGTAGTGGAAAA+AGG - Chr7:8912815-8912834 MsG0780036498.01.T01:intron 40.0%
! CCTTTTTCCACTACTTGATG+AGG + Chr7:8912818-8912837 None:intergenic 40.0%
! CTCTCCACAAACTTTTCACT+TGG + Chr7:8912744-8912763 None:intergenic 40.0%
! GGTACACATTCCATCCTTTT+TGG + Chr7:8914026-8914045 None:intergenic 40.0%
! TATATAGGGCACCATTCGAA+TGG - Chr7:8913984-8914003 MsG0780036498.01.T01:intron 40.0%
! TCTGTGCTTGTCAAAGTGTT+TGG - Chr7:8914939-8914958 MsG0780036498.01.T01:CDS 40.0%
!! AAGAAAATGAGTGCTGGGAT+TGG - Chr7:8913440-8913459 MsG0780036498.01.T01:CDS 40.0%
!! AAGCTTTTTCTCTTGGCATC+TGG + Chr7:8913309-8913328 None:intergenic 40.0%
!! AGAAAATGAGTGCTGGGATT+GGG - Chr7:8913441-8913460 MsG0780036498.01.T01:CDS 40.0%
!! GTTAAAAGCGCTTTCTTGCA+CGG - Chr7:8914054-8914073 MsG0780036498.01.T01:intron 40.0%
!! TGGGATCAAGCTTTTTCTCT+TGG + Chr7:8913316-8913335 None:intergenic 40.0%
AACATGTCCCGAAGTTCTTG+TGG - Chr7:8913138-8913157 MsG0780036498.01.T01:intron 45.0%
AAGGCTAGACTTGTAGCCAA+AGG - Chr7:8913910-8913929 MsG0780036498.01.T01:intron 45.0%
ACATGTCCCGAAGTTCTTGT+GGG - Chr7:8913139-8913158 MsG0780036498.01.T01:intron 45.0%
AGATAAGACACCTGAACGTG+TGG - Chr7:8913220-8913239 MsG0780036498.01.T01:intron 45.0%
ATAAGGACACCAAGCAAGTG+GGG - Chr7:8912679-8912698 MsG0780036498.01.T01:CDS 45.0%
ATCACACCCTCATCAAGTAG+TGG - Chr7:8912808-8912827 MsG0780036498.01.T01:intron 45.0%
CATCTTTGGCACTGTCGTTA+TGG - Chr7:8912594-8912613 MsG0780036498.01.T01:intron 45.0%
CTAGGAATCCTATTGCTCCT+GGG - Chr7:8914517-8914536 MsG0780036498.01.T01:intron 45.0%
CTCCGTGATCTTTCCAATGA+TGG - Chr7:8915105-8915124 MsG0780036498.01.T01:CDS 45.0%
GAATAAGGACACCAAGCAAG+TGG - Chr7:8912677-8912696 MsG0780036498.01.T01:CDS 45.0%
GAGTTGACTATATTACCGGC+AGG - Chr7:8913818-8913837 MsG0780036498.01.T01:intron 45.0%
GCATGCATGTGTAACTCAGT+TGG + Chr7:8914684-8914703 None:intergenic 45.0%
GGGGTGAAAGTGAAGAAGAA+AGG - Chr7:8913502-8913521 MsG0780036498.01.T01:CDS 45.0%
GTTCTCGACTACAACCATCT+TGG + Chr7:8912310-8912329 None:intergenic 45.0%
TAATGTCACTCCACACGTTC+AGG + Chr7:8913233-8913252 None:intergenic 45.0%
TCAAAGAACCCTGTGCTTCT+TGG - Chr7:8915046-8915065 MsG0780036498.01.T01:CDS 45.0%
TCAGTGCCTTCGAACAGATA+GGG - Chr7:8912963-8912982 MsG0780036498.01.T01:intron 45.0%
TCATTGGAAAGATCACGGAG+AGG + Chr7:8915105-8915124 None:intergenic 45.0%
TCTAGGAATCCTATTGCTCC+TGG - Chr7:8914516-8914535 MsG0780036498.01.T01:intron 45.0%
TGTCATGTAATGGCTGCATC+CGG + Chr7:8912220-8912239 None:intergenic 45.0%
TTAGTTCAGGTGCAGTCTCA+TGG - Chr7:8914852-8914871 MsG0780036498.01.T01:intron 45.0%
TTCAGTGCCTTCGAACAGAT+AGG - Chr7:8912962-8912981 MsG0780036498.01.T01:intron 45.0%
! CCAATAGTTTTTGCACCTGC+CGG + Chr7:8913836-8913855 None:intergenic 45.0%
! GGCATTGTATGGCCTTAAAC+AGG - Chr7:8914160-8914179 MsG0780036498.01.T01:intron 45.0%
!! AGAGGCTCTAGAAGAAGGAA+GGG - Chr7:8913605-8913624 MsG0780036498.01.T01:CDS 45.0%
!! TTGCTTGGTGTCCTTATTCC+CGG + Chr7:8912676-8912695 None:intergenic 45.0%
AACAAAACGGAGTCGCGGAA+AGG - Chr7:8913069-8913088 MsG0780036498.01.T01:intron 50.0%
AACTTGCACCCAGGAGCAAT+AGG + Chr7:8914528-8914547 None:intergenic 50.0%
AAGGGATGGAAGTGAGAAGC+TGG - Chr7:8914759-8914778 MsG0780036498.01.T01:intron 50.0%
ACCTCAACAAAACGGAGTCG+CGG - Chr7:8913064-8913083 MsG0780036498.01.T01:intron 50.0%
ATCGCTCTTGCTGCCCAAAA+AGG - Chr7:8914009-8914028 MsG0780036498.01.T01:intron 50.0%
ATGCTCGTGGTGCCTGTTTA+AGG + Chr7:8914175-8914194 None:intergenic 50.0%
ATGGTGCCCTATATAGCCAC+TGG + Chr7:8913979-8913998 None:intergenic 50.0%
CACACTCGTCATGAGCCATT+AGG + Chr7:8912161-8912180 None:intergenic 50.0%
CAGTGCCTTCGAACAGATAG+GGG - Chr7:8912964-8912983 MsG0780036498.01.T01:intron 50.0%
CCAAGGTTGGGCTTCTATTC+AGG + Chr7:8913193-8913212 None:intergenic 50.0%
CCGGCAGGTGCAAAAACTAT+TGG - Chr7:8913833-8913852 MsG0780036498.01.T01:intron 50.0%
CCTGAATAGAAGCCCAACCT+TGG - Chr7:8913190-8913209 MsG0780036498.01.T01:intron 50.0%
CGAAGAGTTCGCGAGAAACT+TGG - Chr7:8914965-8914984 MsG0780036498.01.T01:CDS 50.0%
CTCTTGCTGCCCAAAAAGGA+TGG - Chr7:8914013-8914032 MsG0780036498.01.T01:intron 50.0%
GAAAGATCACGGAGAGGAAG+TGG + Chr7:8915099-8915118 None:intergenic 50.0%
GAAGAAGGGTGATGAGTCGA+AGG - Chr7:8914121-8914140 MsG0780036498.01.T01:intron 50.0%
GCTCGGAAACAACTCCAAGA+TGG - Chr7:8912293-8912312 MsG0780036498.01.T01:CDS 50.0%
GGATGCAGCCATTACATGAC+AGG - Chr7:8912219-8912238 MsG0780036498.01.T01:CDS 50.0%
GTCGTCTAAAAAGCAACCGG+TGG - Chr7:8914874-8914893 MsG0780036498.01.T01:intron 50.0%
GTGGGCAGAGGCAGTAAATT+AGG - Chr7:8913157-8913176 MsG0780036498.01.T01:intron 50.0%
TGGGGAAGGGATTGTGTCAT+GGG - Chr7:8912697-8912716 MsG0780036498.01.T01:CDS 50.0%
TTAAACAGGCACCACGAGCA+TGG - Chr7:8914174-8914193 MsG0780036498.01.T01:intron 50.0%
! TGCTACGACCAAGAAGCACA+GGG + Chr7:8915057-8915076 None:intergenic 50.0%
! TTGCTACGACCAAGAAGCAC+AGG + Chr7:8915058-8915077 None:intergenic 50.0%
!! CAGAGGCTCTAGAAGAAGGA+AGG - Chr7:8913604-8913623 MsG0780036498.01.T01:CDS 50.0%
!! CATCCAGAGGCTCTAGAAGA+AGG - Chr7:8913600-8913619 MsG0780036498.01.T01:CDS 50.0%
!! CTTCCTTCTTCTAGAGCCTC+TGG + Chr7:8913606-8913625 None:intergenic 50.0%
AAGATGGTAACAGGGCTGCC+GGG - Chr7:8912655-8912674 MsG0780036498.01.T01:CDS 55.0%
CAATCCCTTCCCCACTTGCT+TGG + Chr7:8912691-8912710 None:intergenic 55.0%
CCTCTGCCCACAAGAACTTC+GGG + Chr7:8913148-8913167 None:intergenic 55.0%
CTCCTCCCCTATCTGTTCGA+AGG + Chr7:8912972-8912991 None:intergenic 55.0%
GAAGATGGTAACAGGGCTGC+CGG - Chr7:8912654-8912673 MsG0780036498.01.T01:CDS 55.0%
GACACCAAGCAAGTGGGGAA+GGG - Chr7:8912684-8912703 MsG0780036498.01.T01:CDS 55.0%
GCCTCTGCCCACAAGAACTT+CGG + Chr7:8913149-8913168 None:intergenic 55.0%
GGATGGAAGTGAGAAGCTGG+AGG - Chr7:8914762-8914781 MsG0780036498.01.T01:intron 55.0%
GGGTGAGACAACCACCAGTA+TGG - Chr7:8913625-8913644 MsG0780036498.01.T01:intron 55.0%
GTGGGGAAGGGATTGTGTCA+TGG - Chr7:8912696-8912715 MsG0780036498.01.T01:CDS 55.0%
TAACAGGGCTGCCGGGAATA+AGG - Chr7:8912662-8912681 MsG0780036498.01.T01:CDS 55.0%
TGCCTTCGAACAGATAGGGG+AGG - Chr7:8912967-8912986 MsG0780036498.01.T01:intron 55.0%
!! TCCGCGACTCCGTTTTGTTG+AGG + Chr7:8913068-8913087 None:intergenic 55.0%
ATGCGGCTGTACCATGCTCG+TGG + Chr7:8914188-8914207 None:intergenic 60.0%
CCCGAAGTTCTTGTGGGCAG+AGG - Chr7:8913145-8913164 MsG0780036498.01.T01:intron 60.0%
GGACACCAAGCAAGTGGGGA+AGG - Chr7:8912683-8912702 MsG0780036498.01.T01:CDS 60.0%
Chromosome Type Strat End Strand Name
Chr7 gene 8912114 8915135 8912114 ID=MsG0780036498.01;Name=MsG0780036498.01
Chr7 mRNA 8912114 8915135 8912114 ID=MsG0780036498.01.T01;Parent=MsG0780036498.01;Name=MsG0780036498.01.T01;_AED=0.41;_eAED=0.42;_QI=0|0|0|1|1|1|6|0|359
Chr7 exon 8914919 8915135 8914919 ID=MsG0780036498.01.T01:exon:1780;Parent=MsG0780036498.01.T01
Chr7 exon 8914531 8914594 8914531 ID=MsG0780036498.01.T01:exon:1779;Parent=MsG0780036498.01.T01
Chr7 exon 8913351 8913642 8913351 ID=MsG0780036498.01.T01:exon:1778;Parent=MsG0780036498.01.T01
Chr7 exon 8912822 8912896 8912822 ID=MsG0780036498.01.T01:exon:1777;Parent=MsG0780036498.01.T01
Chr7 exon 8912606 8912757 8912606 ID=MsG0780036498.01.T01:exon:1776;Parent=MsG0780036498.01.T01
Chr7 exon 8912114 8912393 8912114 ID=MsG0780036498.01.T01:exon:1775;Parent=MsG0780036498.01.T01
Chr7 CDS 8914919 8915135 8914919 ID=MsG0780036498.01.T01:cds;Parent=MsG0780036498.01.T01
Chr7 CDS 8914531 8914594 8914531 ID=MsG0780036498.01.T01:cds;Parent=MsG0780036498.01.T01
Chr7 CDS 8913351 8913642 8913351 ID=MsG0780036498.01.T01:cds;Parent=MsG0780036498.01.T01
Chr7 CDS 8912822 8912896 8912822 ID=MsG0780036498.01.T01:cds;Parent=MsG0780036498.01.T01
Chr7 CDS 8912606 8912757 8912606 ID=MsG0780036498.01.T01:cds;Parent=MsG0780036498.01.T01
Chr7 CDS 8912114 8912393 8912114 ID=MsG0780036498.01.T01:cds;Parent=MsG0780036498.01.T01
Gene Sequence

>MsG0780036498.01.T01

ATGAATGCACACTATGCTGAATTAGATGAAACAGAAGAAATGCTCCTAATGGCTCATGACGAGTGTGATGATGAGAAGAGTGCTAAGATTTGGTTTCTTGACTCCGGATGCAGCCATTACATGACAGGAAACAAACAGTGGTTCACAGACATATATGAGCAATATCAACAATCTGTCAAGCTCGGAAACAACTCCAAGATGGTTGTAGTCGAGAACGAAGATGGTAACAGGGCTGCCGGGAATAAGGACACCAAGCAAGTGGGGAAGGGATTGTGTCATGGAGGCTCTAGAAGAAGGAAGGGTGAGACAACCACCAGTATGGATGAAAGATTTCGTGAGTGGAGAAGGGTTATCAGAAAAGAAGAAACACAAAATTTTGTGATGTTTACTATAACATCTGATCGAACTACATTTGAAGAAGCTGTCAAAAGTGAGAAATGGAGGATTGCAATGAATAATGAGATGGATGCAATAGAGAATAATAATACTTGGGAGTTGACTATATTACCGGCAGGTGCAAAAACTATTGGCCTCAAATGGATTTTTAAAACAAAGTTGAATGAGAATGGAGAGGAGTTTAAGAAATCTATGGAAAAGGAATTTAACATGTCAGACCTTGGAAAGATGCACTATTTCCTTGGAGTTGAAGTTTGGCATGGAGAAAAGTATTTGTCTAGGAATCCTATTGCTCCTGGGTGCAAGTTGATTAAAGATGAAAATGGTGTGAAGGTGGATGCTACAAAGTATAAGCAAATTGTTGGTTGTCTGATGTACTTAGCAGCCACAAGACCTGATCTGATTTCAGGTGCAGTCTCATGGTCGTCTAAAAAGCAACCGGTGGTTACTTTATCGACAACTGAAGCAGAATTTATTGCAGCTGCCTTCTGTGCTTGTCAAAGTGTTTGGATGCGAAGAGTTCGCGAGAAACTTGGTCACACTCAATCTGGAAGCATCACTGTGTATTGCGACAACAGCTCAACAATAAAGCTTTCAAAGAACCCTGTGCTTCTTGGTCGTAGCAAACATATTGATGTTCACTTCCACTTCCTCTCCGTGATCTTTCCAATGATGGAACAATAG

Protein sequence

>MsG0780036498.01.T01

MNAHYAELDETEEMLLMAHDECDDEKSAKIWFLDSGCSHYMTGNKQWFTDIYEQYQQSVKLGNNSKMVVVENEDGNRAAGNKDTKQVGKGLCHGGSRRRKGETTTSMDERFREWRRVIRKEETQNFVMFTITSDRTTFEEAVKSEKWRIAMNNEMDAIENNNTWELTILPAGAKTIGLKWIFKTKLNENGEEFKKSMEKEFNMSDLGKMHYFLGVEVWHGEKYLSRNPIAPGCKLIKDENGVKVDATKYKQIVGCLMYLAATRPDLISGAVSWSSKKQPVVTLSTTEAEFIAAAFCACQSVWMRRVREKLGHTQSGSITVYCDNSSTIKLSKNPVLLGRSKHIDVHFHFLSVIFPMMEQ*