AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180004727.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004727.01.T01 MTR_1g031890 98.214 280 5 0 1 280 1 280 0.0 553
MsG0180004727.01.T01 MTR_1g085490 97.857 280 6 0 1 280 1 280 0.0 551
MsG0180004727.01.T01 MTR_1g031890 98.195 277 5 0 1 277 1 277 0.0 548
MsG0180004727.01.T01 MTR_4g118060 97.143 280 8 0 1 280 1 280 0.0 546
MsG0180004727.01.T01 MTR_1g031890 97.938 194 4 0 1 194 1 194 2.68e-137 385
MsG0180004727.01.T01 MTR_1g110750 31.977 172 102 7 74 233 78 246 9.52e-12 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004727.01.T01 AT5G64670 73.646 277 56 5 1 268 1 269 3.70e-138 391
MsG0180004727.01.T01 AT3G25920 30.667 225 128 11 5 211 19 233 7.79e-13 67.4

Find 124 sgRNAs with CRISPR-Local

Find 351 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGAAATTAATTTATCTATT+AGG 0.187575 1:-81882772 None:intergenic
TTACAATAAGTTAGGCTTTC+GGG 0.235237 1:+81882464 MsG0180004727.01.T01:CDS
CCCCAACTTTGAACCTTTCC+TGG 0.235844 1:-81880456 None:intergenic
GCTCTAAAACCTTGAAAATC+TGG 0.242722 1:-81880308 None:intergenic
ACCAACTCTTCGGAATTAAT+TGG 0.243372 1:+81878305 MsG0180004727.01.T01:five_prime_UTR
ACCTGAAAAGTGAGGCTAAA+TGG 0.251841 1:-81880536 None:intergenic
ACGCGGAACTTATGTGAATA+TGG 0.275416 1:-81878263 None:intergenic
GGAGGAGGTCTAGCTGCTTT+AGG 0.302384 1:-81882531 None:intergenic
ATAGATAAATTAATTTCATT+TGG 0.309261 1:+81882776 MsG0180004727.01.T01:three_prime_UTR
AGCCGCTTCAACTGCTTCCT+TGG 0.345478 1:-81882418 None:intergenic
ATTACAATAAGTTAGGCTTT+CGG 0.353200 1:+81882463 MsG0180004727.01.T01:CDS
TAGATAAATTAATTTCATTT+GGG 0.363567 1:+81882777 MsG0180004727.01.T01:three_prime_UTR
TTGAACCTTTCCTGGCTCTC+TGG 0.363875 1:-81880448 None:intergenic
GTCACAAAGGCCAGAGAGCC+AGG 0.365783 1:+81880438 MsG0180004727.01.T01:CDS
ACACAGGATGCAGGGGTACT+TGG 0.366534 1:+81881724 MsG0180004727.01.T01:intron
GCCAGGAAAGGTTCAAAGTT+GGG 0.370354 1:+81880455 MsG0180004727.01.T01:CDS
ATACATACCTCTAGATGAAT+TGG 0.374426 1:-81881805 None:intergenic
AAGGTGTATTACAATAAGTT+AGG 0.375769 1:+81882456 MsG0180004727.01.T01:CDS
TTGTAAGCGGTTTGCTCTAA+AGG 0.377536 1:+81882711 MsG0180004727.01.T01:three_prime_UTR
GGAGCTGCAAGGGATGAAAT+TGG 0.382447 1:-81880241 None:intergenic
TGAAAATCTGGGTGAGCATT+GGG 0.394785 1:-81880296 None:intergenic
CCTGAAAAGTGAGGCTAAAT+GGG 0.402843 1:-81880535 None:intergenic
TGGTGGAACTGATGCGGATT+CGG 0.403310 1:-81878286 None:intergenic
ACAAGGAAAGGTCGTGGTAT+TGG 0.409504 1:+81880386 MsG0180004727.01.T01:CDS
TCCTACGGCGAAGAGGGGTT+TGG 0.422318 1:-81880490 None:intergenic
GGGTTCTTGAAACCACGTTT+AGG 0.422852 1:-81880515 None:intergenic
TTGAAAATCTGGGTGAGCAT+TGG 0.433333 1:-81880297 None:intergenic
ATTGCAACATTTATCAATGC+TGG 0.438724 1:+81881574 MsG0180004727.01.T01:CDS
CTAATCTTTCACTAACAAAC+AGG 0.441337 1:-81880120 None:intergenic
AGGTAACAAGGGTCACTGTC+AGG 0.442200 1:+81882394 MsG0180004727.01.T01:intron
ATTATCTCTCAGATCATTCA+AGG 0.446007 1:-81880345 None:intergenic
AAAGGTCGTGGTATTGGATC+TGG 0.457769 1:+81880392 MsG0180004727.01.T01:CDS
TAAAGATGGAGTAAGATTGA+TGG 0.459426 1:+81881756 MsG0180004727.01.T01:CDS
CATTTGGGACAAATGAAATG+AGG 0.459976 1:+81882792 MsG0180004727.01.T01:three_prime_UTR
TCTGGAAAGGGAAAGACTGC+TGG 0.460358 1:+81880410 MsG0180004727.01.T01:CDS
ACTCACAACAAATCCGTTCT+CGG 0.463672 1:+81880206 MsG0180004727.01.T01:CDS
GGAATTGGCTTCTTCGGAGC+AGG 0.465181 1:-81882591 None:intergenic
GAGAGAGATGAGAATGAAGA+GGG 0.471442 1:-81878160 None:intergenic
CTCTAAAACCTTGAAAATCT+GGG 0.474320 1:-81880307 None:intergenic
TGAGGGTTTAGAAAGAGAAA+TGG 0.474960 1:+81878123 MsG0180004727.01.T01:five_prime_UTR
CATCAGTTCCACCAACTCTT+CGG 0.481311 1:+81878295 MsG0180004727.01.T01:five_prime_UTR
AAAGGGAAAGACTGCTGGGA+GGG 0.483006 1:+81880415 MsG0180004727.01.T01:CDS
ACCAATTAATTCCGAAGAGT+TGG 0.483195 1:-81878306 None:intergenic
CCTTTCTTCTCAAACCACTC+AGG 0.485963 1:-81882498 None:intergenic
TACAGTCTCTCACGATGTCT+TGG 0.487177 1:+81882740 MsG0180004727.01.T01:three_prime_UTR
GGTTTGAAGTTATTACCATC+TGG 0.487229 1:+81880086 MsG0180004727.01.T01:intron
AAAGATGGAGTAAGATTGAT+GGG 0.489075 1:+81881757 MsG0180004727.01.T01:CDS
CATTTGTGAAATTAAAATGA+GGG 0.491787 1:+81878106 MsG0180004727.01.T01:five_prime_UTR
AGCCAGGAAAGGTTCAAAGT+TGG 0.492590 1:+81880454 MsG0180004727.01.T01:CDS
CTTGGGAAGCAAATTAAAGA+TGG 0.493440 1:+81881742 MsG0180004727.01.T01:CDS
ATTTAACTGAGCTGACCTAC+TGG 0.497431 1:-81882642 None:intergenic
CGCGGAACTTATGTGAATAT+GGG 0.498431 1:-81878262 None:intergenic
AAGGATAAAGTTGATAGCAT+TGG 0.500169 1:+81882561 MsG0180004727.01.T01:CDS
TATTACCATACACAGGATGC+AGG 0.500174 1:+81881715 MsG0180004727.01.T01:intron
GAAGAAAGATGCTAAGAAGA+AGG 0.501124 1:+81880147 MsG0180004727.01.T01:exon
CACAGGATGCAGGGGTACTT+GGG 0.501363 1:+81881725 MsG0180004727.01.T01:intron
TAGACCTCCTCCAAAACAAA+AGG 0.503344 1:+81882542 MsG0180004727.01.T01:CDS
GGCTGGTGGGTCCGTCAGAA+AGG 0.508668 1:+81882437 MsG0180004727.01.T01:CDS
AATTAATTCCGAAGAGTTGG+TGG 0.511319 1:-81878303 None:intergenic
TAGGCATCCTACGGCGAAGA+GGG 0.511475 1:-81880496 None:intergenic
CTGGAAAGGGAAAGACTGCT+GGG 0.513550 1:+81880411 MsG0180004727.01.T01:CDS
ACATTTGTGAAATTAAAATG+AGG 0.514122 1:+81878105 MsG0180004727.01.T01:five_prime_UTR
AGAAGAGGAGAATGCTCCGC+GGG 0.517286 1:-81878211 None:intergenic
AAGGAAGCAGTTGAAGCGGC+TGG 0.517828 1:+81882420 MsG0180004727.01.T01:CDS
CCTGAGTGGTTTGAGAAGAA+AGG 0.522455 1:+81882498 MsG0180004727.01.T01:CDS
CCTCTAGATGAATTGGCCAT+TGG 0.524840 1:-81881798 None:intergenic
CGTGGTATTGGATCTGGAAA+GGG 0.539393 1:+81880398 MsG0180004727.01.T01:CDS
AGGGATGAAATTGGATAGAC+GGG 0.542610 1:-81880232 None:intergenic
AACTGATGCGGATTCGGACG+CGG 0.546082 1:-81878280 None:intergenic
GGTTCAAAGTTGGGGTTCGA+AGG 0.550775 1:+81880464 MsG0180004727.01.T01:CDS
AAGGGAAAGACTGCTGGGAG+GGG 0.550921 1:+81880416 MsG0180004727.01.T01:CDS
GCTGACCTACTGGAAGATCC+TGG 0.552817 1:-81882632 None:intergenic
TGAGAGAGATGAGAATGAAG+AGG 0.553125 1:-81878161 None:intergenic
AAGGGATGAAATTGGATAGA+CGG 0.557057 1:-81880233 None:intergenic
GATAGACGGGTATCCGAGAA+CGG 0.557179 1:-81880219 None:intergenic
CCAGGAAAGGTTCAAAGTTG+GGG 0.558197 1:+81880456 MsG0180004727.01.T01:CDS
TCGTGGTATTGGATCTGGAA+AGG 0.561440 1:+81880397 MsG0180004727.01.T01:CDS
AAAGAGTGAGGGAGCTGCAA+GGG 0.562238 1:-81880251 None:intergenic
AAGGGTCACTGTCAGGGCCA+AGG 0.567491 1:+81882401 MsG0180004727.01.T01:CDS
GGAGTAAGATTGATGGGGCG+TGG 0.570786 1:+81881763 MsG0180004727.01.T01:CDS
GATCACAATGAAAACACTCA+AGG 0.573417 1:+81881618 MsG0180004727.01.T01:CDS
GAAGCAGTTGAAGCGGCTGG+TGG 0.577528 1:+81882423 MsG0180004727.01.T01:CDS
GGCCAAGGAAGCAGTTGAAG+CGG 0.578446 1:+81882416 MsG0180004727.01.T01:CDS
AAGCAGTTGAAGCGGCTGGT+GGG 0.580431 1:+81882424 MsG0180004727.01.T01:CDS
ATTGTAATACACCTTTCTGA+CGG 0.584521 1:-81882448 None:intergenic
GGTAACAAGGGTCACTGTCA+GGG 0.585974 1:+81882395 MsG0180004727.01.T01:intron
CGAAAACAGAAGACAAGGAA+AGG 0.589508 1:+81880374 MsG0180004727.01.T01:CDS
TATTGAGTTTACAGGTAACA+AGG 0.590526 1:+81882382 MsG0180004727.01.T01:intron
TCAAAGTTGGGGTTCGAAGG+AGG 0.591062 1:+81880467 MsG0180004727.01.T01:CDS
TAGACGGCACGGTGGAGAAG+AGG 0.591371 1:-81878226 None:intergenic
GGCGAGAGTGTTAGACGGCA+CGG 0.598825 1:-81878237 None:intergenic
ATTACCATACACAGGATGCA+GGG 0.600741 1:+81881716 MsG0180004727.01.T01:intron
AAAGGCCAGAGAGCCAGGAA+AGG 0.600747 1:+81880443 MsG0180004727.01.T01:CDS
CAGAAGACAAGGAAAGGTCG+TGG 0.605789 1:+81880380 MsG0180004727.01.T01:CDS
CAGGAAGTGTTACTTCCAGA+TGG 0.606957 1:-81880101 None:intergenic
AGGCATCCTACGGCGAAGAG+GGG 0.607244 1:-81880495 None:intergenic
CCAATGGCCAATTCATCTAG+AGG 0.608787 1:+81881798 MsG0180004727.01.T01:CDS
GTGTGCTGGGAGGATGATGT+TGG 0.613547 1:+81882889 MsG0180004727.01.T01:three_prime_UTR
GCACGAACGTTGAAAGAGTG+AGG 0.615232 1:-81880263 None:intergenic
GAACTTATGTGAATATGGGA+TGG 0.615919 1:-81878258 None:intergenic
TTAGGCATCCTACGGCGAAG+AGG 0.618508 1:-81880497 None:intergenic
GAAAGAGTGAGGGAGCTGCA+AGG 0.621872 1:-81880252 None:intergenic
CGCCGTAGGATGCCTAAACG+TGG 0.624469 1:+81880503 MsG0180004727.01.T01:CDS
AACCACGTTTAGGCATCCTA+CGG 0.626355 1:-81880505 None:intergenic
AAGAGTTGGTGGAACTGATG+CGG 0.627754 1:-81878292 None:intergenic
GTGGTTCTGAGAAGATCCAA+TGG 0.632368 1:+81881782 MsG0180004727.01.T01:CDS
GAAAGGGAAAGACTGCTGGG+AGG 0.641614 1:+81880414 MsG0180004727.01.T01:CDS
TTCCCCGAAAACAGAAGACA+AGG 0.642420 1:+81880369 MsG0180004727.01.T01:CDS
GGGCACTGTTGAAGCCTGAG+TGG 0.644311 1:+81882484 MsG0180004727.01.T01:CDS
GCCAAACCCCTCTTCGCCGT+AGG 0.645837 1:+81880489 MsG0180004727.01.T01:CDS
CACGAACGTTGAAAGAGTGA+GGG 0.652354 1:-81880262 None:intergenic
GGAAGCCAGGATCTTCCAGT+AGG 0.653803 1:+81882627 MsG0180004727.01.T01:CDS
ATTGAGTTTACAGGTAACAA+GGG 0.656620 1:+81882383 MsG0180004727.01.T01:intron
ACTGCTGGGAGGGGTCACAA+AGG 0.661736 1:+81880425 MsG0180004727.01.T01:CDS
AGAAGTATACCTGAAAAGTG+AGG 0.669464 1:-81880544 None:intergenic
GAGAAGAGGAGAATGCTCCG+CGG 0.671101 1:-81878212 None:intergenic
ATAAAGTTGATAGCATTGGA+CGG 0.672998 1:+81882565 MsG0180004727.01.T01:CDS
TTACCATACACAGGATGCAG+GGG 0.679526 1:+81881717 MsG0180004727.01.T01:intron
GAAGAGGAGAATGCTCCGCG+GGG 0.686164 1:-81878210 None:intergenic
AAGAGGAGAATGCTCCGCGG+GGG 0.699790 1:-81878209 None:intergenic
GTGAGCATTGGGATTAAATG+TGG 0.701109 1:-81880285 None:intergenic
GGGATGGCGAGAGTGTTAGA+CGG 0.702406 1:-81878242 None:intergenic
AAGATGGAGTAAGATTGATG+GGG 0.737220 1:+81881758 MsG0180004727.01.T01:CDS
GAGAGTGTTAGACGGCACGG+TGG 0.812335 1:-81878234 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAGTTAAAATATTTGTAAA+AGG + Chr1:81879604-81879623 MsG0180004727.01.T01:intron 10.0%
!! AAGTTAAAATATTTGTAAAA+GGG + Chr1:81879605-81879624 MsG0180004727.01.T01:intron 10.0%
!! ATAGATAAATTAATTTCATT+TGG + Chr1:81882776-81882795 MsG0180004727.01.T01:three_prime_UTR 10.0%
!! ATGAAATTAATTTATCTATT+AGG - Chr1:81882775-81882794 None:intergenic 10.0%
!! ATTATAATATTCAAAACTAT+AGG - Chr1:81880722-81880741 None:intergenic 10.0%
!! TAGATAAATTAATTTCATTT+GGG + Chr1:81882777-81882796 MsG0180004727.01.T01:three_prime_UTR 10.0%
!!! TTTACAAATATTTTAACTTT+GGG - Chr1:81879604-81879623 None:intergenic 10.0%
!!! TTTTACAAATATTTTAACTT+TGG - Chr1:81879605-81879624 None:intergenic 10.0%
!! AAACAAAAAGATATATAAAC+AGG - Chr1:81880571-81880590 None:intergenic 15.0%
!! GAGATAAATAAATGTAAAAT+TGG + Chr1:81882275-81882294 MsG0180004727.01.T01:intron 15.0%
!! TCTTAAAATAACATACAAAA+GGG - Chr1:81878393-81878412 None:intergenic 15.0%
!! TTCTTAAAATAACATACAAA+AGG - Chr1:81878394-81878413 None:intergenic 15.0%
!! TTTCAATTCAAATAATTAGA+GGG - Chr1:81878486-81878505 None:intergenic 15.0%
!!! AAAGTATTTCTAAAGATTTA+AGG - Chr1:81881890-81881909 None:intergenic 15.0%
!!! AAGATAAGATTTTTATTTCA+AGG + Chr1:81880989-81881008 MsG0180004727.01.T01:intron 15.0%
!!! AATTTGTAATTTTTTGTAAG+CGG + Chr1:81882698-81882717 MsG0180004727.01.T01:three_prime_UTR 15.0%
!!! ATTATAATTCTGAGATTTAT+GGG + Chr1:81880734-81880753 MsG0180004727.01.T01:intron 15.0%
!!! ATTTTTTAACGGTTTTATTT+TGG + Chr1:81880053-81880072 MsG0180004727.01.T01:intron 15.0%
!!! TACACGATTTATTTTTTATT+TGG + Chr1:81878992-81879011 MsG0180004727.01.T01:intron 15.0%
!!! TATTATAATTCTGAGATTTA+TGG + Chr1:81880733-81880752 MsG0180004727.01.T01:intron 15.0%
!!! TGTATGTTATTTTAAGAATT+TGG + Chr1:81878396-81878415 MsG0180004727.01.T01:intron 15.0%
!!! TTTTATTTTGGTTTGTTTTA+AGG + Chr1:81880065-81880084 MsG0180004727.01.T01:intron 15.0%
!! AAAAATCAGATAACATGTAT+CGG - Chr1:81880027-81880046 None:intergenic 20.0%
!! AAATCTTCTGTAAACATATA+TGG + Chr1:81881018-81881037 MsG0180004727.01.T01:intron 20.0%
!! AATGATTCAATGATTGTAAA+AGG + Chr1:81879720-81879739 MsG0180004727.01.T01:intron 20.0%
!! ACACAATTTAAAAAATGAAG+AGG - Chr1:81878770-81878789 None:intergenic 20.0%
!! ACATTTGTGAAATTAAAATG+AGG + Chr1:81878105-81878124 MsG0180004727.01.T01:five_prime_UTR 20.0%
!! ATAATAAACAAAAGAATGAG+AGG - Chr1:81881695-81881714 None:intergenic 20.0%
!! CATTTGTGAAATTAAAATGA+GGG + Chr1:81878106-81878125 MsG0180004727.01.T01:five_prime_UTR 20.0%
!! GGAAATTATCTAAATCTAAA+GGG + Chr1:81879486-81879505 MsG0180004727.01.T01:intron 20.0%
!! GTTTCAATTCAAATAATTAG+AGG - Chr1:81878487-81878506 None:intergenic 20.0%
!! TAAAATATTTGTAAAAGGGT+TGG + Chr1:81879609-81879628 MsG0180004727.01.T01:intron 20.0%
!! TAATAAACAAAAGAATGAGA+GGG - Chr1:81881694-81881713 None:intergenic 20.0%
!! TATCAATAAAACCTTCAATT+TGG - Chr1:81879863-81879882 None:intergenic 20.0%
!! TGAACTCTAATAATATACTA+AGG - Chr1:81880679-81880698 None:intergenic 20.0%
!! TGGAAATTATCTAAATCTAA+AGG + Chr1:81879485-81879504 MsG0180004727.01.T01:intron 20.0%
!! TTATTATTATTACCATACAC+AGG + Chr1:81881708-81881727 MsG0180004727.01.T01:intron 20.0%
!! TTGAATCATTAAATCATTCA+TGG - Chr1:81879710-81879729 None:intergenic 20.0%
!! TTTCAATTCTAAACACTTAA+AGG + Chr1:81882304-81882323 MsG0180004727.01.T01:intron 20.0%
!!! AAACAAATTCATTTTAAGTG+AGG - Chr1:81881659-81881678 None:intergenic 20.0%
!!! AGGTTTTATTGATAATACTA+AGG + Chr1:81879869-81879888 MsG0180004727.01.T01:intron 20.0%
!!! ATCCTTTTTAATAATATTCC+TGG - Chr1:81880885-81880904 None:intergenic 20.0%
!!! ATGGTTATTAATTTTCTTGT+TGG + Chr1:81878894-81878913 MsG0180004727.01.T01:intron 20.0%
!!! ATTTTTGTTTATCTTGATCT+TGG + Chr1:81879465-81879484 MsG0180004727.01.T01:intron 20.0%
!!! GATATTTTCATGTTTTTGTT+TGG + Chr1:81879527-81879546 MsG0180004727.01.T01:intron 20.0%
!!! TTAATTATCTTGTCGTTTAA+GGG + Chr1:81878507-81878526 MsG0180004727.01.T01:intron 20.0%
!!! TTTAGTACTCTTTTTTTTTC+TGG + Chr1:81882675-81882694 MsG0180004727.01.T01:three_prime_UTR 20.0%
!!! TTTATTGTATTGACATTTGA+CGG + Chr1:81881166-81881185 MsG0180004727.01.T01:intron 20.0%
! AAAAAAATACTTTCCTATGG+TGG - Chr1:81879086-81879105 None:intergenic 25.0%
! AAAAAATACTTTCCTATGGT+GGG - Chr1:81879085-81879104 None:intergenic 25.0%
! AAAATCAGATAACATGTATC+GGG - Chr1:81880026-81880045 None:intergenic 25.0%
! AAACTTTATAGGCATATAAG+AGG + Chr1:81882347-81882366 MsG0180004727.01.T01:intron 25.0%
! AACTTTATAGGCATATAAGA+GGG + Chr1:81882348-81882367 MsG0180004727.01.T01:intron 25.0%
! AAGGTGTATTACAATAAGTT+AGG + Chr1:81882456-81882475 MsG0180004727.01.T01:CDS 25.0%
! AATCAAACAAATCAAAGAAC+AGG - Chr1:81879377-81879396 None:intergenic 25.0%
! AATGTCTAGATAAGTTTATG+TGG + Chr1:81881386-81881405 MsG0180004727.01.T01:intron 25.0%
! AATTGACATGTAGAAATAAG+AGG - Chr1:81881080-81881099 None:intergenic 25.0%
! ACTGATAGATTGAGAAATAA+AGG - Chr1:81881485-81881504 None:intergenic 25.0%
! ATTACAATAAGTTAGGCTTT+CGG + Chr1:81882463-81882482 MsG0180004727.01.T01:CDS 25.0%
! CAAAATGAAGAAATTAAACC+TGG - Chr1:81879791-81879810 None:intergenic 25.0%
! CTAAAGATTTAAGGATCAAA+AGG - Chr1:81881881-81881900 None:intergenic 25.0%
! CTCCAGGAATATTATTAAAA+AGG + Chr1:81880880-81880899 MsG0180004727.01.T01:intron 25.0%
! CTGATAGATTGAGAAATAAA+GGG - Chr1:81881484-81881503 None:intergenic 25.0%
! GAGTTCATTAGTTATAATTG+TGG + Chr1:81880692-81880711 MsG0180004727.01.T01:intron 25.0%
! GTCAAAAAAATACTTTCCTA+TGG - Chr1:81879089-81879108 None:intergenic 25.0%
! TAAAATTTCTGTAGTGTCTA+AGG + Chr1:81882059-81882078 MsG0180004727.01.T01:intron 25.0%
! TAATAATATTCCTGGAGAAA+TGG - Chr1:81880877-81880896 None:intergenic 25.0%
! TATACAGTCACAAACTTTAT+AGG + Chr1:81882336-81882355 MsG0180004727.01.T01:intron 25.0%
! TGATAGATTGAGAAATAAAG+GGG - Chr1:81881483-81881502 None:intergenic 25.0%
! TGATGAATGAGTAAATTGAA+AGG - Chr1:81879293-81879312 None:intergenic 25.0%
! TTATGGTCATTAGATTAAAG+AGG - Chr1:81879952-81879971 None:intergenic 25.0%
! TTGTAACATATTGAGTTTAC+AGG + Chr1:81882374-81882393 MsG0180004727.01.T01:intron 25.0%
!! AATTTAGAGAACTGCATTTT+AGG + Chr1:81878672-81878691 MsG0180004727.01.T01:intron 25.0%
!! ATATCTGGAAAGTATATATC+TGG - Chr1:81879665-81879684 None:intergenic 25.0%
!! ATTTAGAGAACTGCATTTTA+GGG + Chr1:81878673-81878692 MsG0180004727.01.T01:intron 25.0%
!! ATTTTCATTGATATTGCACT+GGG + Chr1:81878434-81878453 MsG0180004727.01.T01:intron 25.0%
!! CGTATATTTTCATATTTTCC+AGG + Chr1:81879770-81879789 MsG0180004727.01.T01:intron 25.0%
!! CTTAATTATCTTGTCGTTTA+AGG + Chr1:81878506-81878525 MsG0180004727.01.T01:intron 25.0%
!! TATTTTCATTGATATTGCAC+TGG + Chr1:81878433-81878452 MsG0180004727.01.T01:intron 25.0%
!! TTTTTCCTCTTCAAATTCAA+TGG - Chr1:81879345-81879364 None:intergenic 25.0%
!!! CTAAGTAATAAGTGTTTTTG+AGG + Chr1:81881843-81881862 MsG0180004727.01.T01:intron 25.0%
!!! CTTTGATTTGTTTGATTCAA+TGG + Chr1:81879380-81879399 MsG0180004727.01.T01:intron 25.0%
!!! GTATGTATACTTTGATTTGA+AGG + Chr1:81881820-81881839 MsG0180004727.01.T01:intron 25.0%
!!! TCAACTTTATCCTTTTGTTT+TGG - Chr1:81882555-81882574 None:intergenic 25.0%
!!! TTGGTTGTGATTTTTTATCT+TGG + Chr1:81879546-81879565 MsG0180004727.01.T01:intron 25.0%
!!! TTTTTAGTGCATATCATACT+TGG - Chr1:81881104-81881123 None:intergenic 25.0%
AAAGATGGAGTAAGATTGAT+GGG + Chr1:81881757-81881776 MsG0180004727.01.T01:CDS 30.0%
AAATCAGATAACATGTATCG+GGG - Chr1:81880025-81880044 None:intergenic 30.0%
AATCACCATTGAATTTGAAG+AGG + Chr1:81879337-81879356 MsG0180004727.01.T01:intron 30.0%
ACAAAAAGATATAGTGTGGA+TGG + Chr1:81879906-81879925 MsG0180004727.01.T01:intron 30.0%
ACTTTATAGGCATATAAGAG+GGG + Chr1:81882349-81882368 MsG0180004727.01.T01:intron 30.0%
AGTGACAAAAAGATATAGTG+TGG + Chr1:81879902-81879921 MsG0180004727.01.T01:intron 30.0%
ATACATACCTCTAGATGAAT+TGG - Chr1:81881808-81881827 None:intergenic 30.0%
ATGTTGCCAAAGTTAAAACA+TGG - Chr1:81882029-81882048 None:intergenic 30.0%
ATTATCTCTCAGATCATTCA+AGG - Chr1:81880348-81880367 None:intergenic 30.0%
ATTCTTCTGTGTATTTAACC+GGG + Chr1:81880601-81880620 MsG0180004727.01.T01:intron 30.0%
ATTGAAAGGAAACAAACGAT+TGG - Chr1:81879279-81879298 None:intergenic 30.0%
ATTGAGTTTACAGGTAACAA+GGG + Chr1:81882383-81882402 MsG0180004727.01.T01:intron 30.0%
ATTGCAACATTTATCAATGC+TGG + Chr1:81881574-81881593 MsG0180004727.01.T01:CDS 30.0%
ATTGTAATACACCTTTCTGA+CGG - Chr1:81882451-81882470 None:intergenic 30.0%
CAACTATCAAACAGTTTATC+GGG - Chr1:81878556-81878575 None:intergenic 30.0%
CACACACAGTTAAAATACAT+TGG - Chr1:81881199-81881218 None:intergenic 30.0%
CCAAACATCTAATCAATCTT+TGG - Chr1:81878597-81878616 None:intergenic 30.0%
CCAAAGATTGATTAGATGTT+TGG + Chr1:81878594-81878613 MsG0180004727.01.T01:intron 30.0%
CCATGCTTAATGCAAATATT+AGG + Chr1:81880937-81880956 MsG0180004727.01.T01:intron 30.0%
CCTAATATTTGCATTAAGCA+TGG - Chr1:81880940-81880959 None:intergenic 30.0%
CCTTCAACTAAAAATGGAAT+TGG - Chr1:81882609-81882628 None:intergenic 30.0%
CTAATCTTTCACTAACAAAC+AGG - Chr1:81880123-81880142 None:intergenic 30.0%
GATTCTTCTGTGTATTTAAC+CGG + Chr1:81880600-81880619 MsG0180004727.01.T01:intron 30.0%
GCAACTATCAAACAGTTTAT+CGG - Chr1:81878557-81878576 None:intergenic 30.0%
TAAAGATGGAGTAAGATTGA+TGG + Chr1:81881756-81881775 MsG0180004727.01.T01:CDS 30.0%
TATTGAGTTTACAGGTAACA+AGG + Chr1:81882382-81882401 MsG0180004727.01.T01:intron 30.0%
TCAAGCAGAATAGTCTTTAT+TGG - Chr1:81880833-81880852 None:intergenic 30.0%
TGGTTAGTACACTATTGTTA+GGG + Chr1:81878325-81878344 MsG0180004727.01.T01:intron 30.0%
TTACAATAAGTTAGGCTTTC+GGG + Chr1:81882464-81882483 MsG0180004727.01.T01:CDS 30.0%
TTGGTTAGTACACTATTGTT+AGG + Chr1:81878324-81878343 MsG0180004727.01.T01:intron 30.0%
TTTGAGTCGTTGTTTATTTC+TGG + Chr1:81879815-81879834 MsG0180004727.01.T01:intron 30.0%
! AAAAATGGAATTGGCTTCTT+CGG - Chr1:81882600-81882619 None:intergenic 30.0%
! AACTAATTTTTGTGTGTGCT+GGG + Chr1:81882876-81882895 MsG0180004727.01.T01:three_prime_UTR 30.0%
! AATGGTTTTCTTTCTTGGAA+TGG - Chr1:81880859-81880878 None:intergenic 30.0%
! AATTCTGAAAAAGTCTCAGA+TGG - Chr1:81880789-81880808 None:intergenic 30.0%
! TTCTAAACACTTAAAGGTGT+AGG + Chr1:81882310-81882329 MsG0180004727.01.T01:intron 30.0%
! TTGAGTCGTTGTTTATTTCT+GGG + Chr1:81879816-81879835 MsG0180004727.01.T01:intron 30.0%
! TTTAACTTTGGCAACATGAA+TGG + Chr1:81882032-81882051 MsG0180004727.01.T01:intron 30.0%
! TTTCTTCTTTTACAGCCAAT+AGG + Chr1:81881541-81881560 MsG0180004727.01.T01:intron 30.0%
!! AAGGATAAAGTTGATAGCAT+TGG + Chr1:81882561-81882580 MsG0180004727.01.T01:CDS 30.0%
!! ATAAAGTTGATAGCATTGGA+CGG + Chr1:81882565-81882584 MsG0180004727.01.T01:CDS 30.0%
!! ATAATTCTGAGATTTATGGG+TGG + Chr1:81880737-81880756 MsG0180004727.01.T01:intron 30.0%
!! ATTCATTTTAAGTGAGGAAG+CGG - Chr1:81881653-81881672 None:intergenic 30.0%
!! CTCTAAAACCTTGAAAATCT+GGG - Chr1:81880310-81880329 None:intergenic 30.0%
!!! ACTTTATCCTTTTGTTTTGG+AGG - Chr1:81882552-81882571 None:intergenic 30.0%
!!! CCAATTCCATTTTTAGTTGA+AGG + Chr1:81882606-81882625 MsG0180004727.01.T01:CDS 30.0%
!!! GCTGTTTTTCATTATTGAAG+AGG - Chr1:81882915-81882934 None:intergenic 30.0%
!!! TTTTGAGCTTATTTTGATGC+TGG + Chr1:81881942-81881961 MsG0180004727.01.T01:intron 30.0%
AAAGGAAACAAACGATTGGA+AGG - Chr1:81879275-81879294 None:intergenic 35.0%
AAGATGGAGTAAGATTGATG+GGG + Chr1:81881758-81881777 MsG0180004727.01.T01:CDS 35.0%
AAGGAAACAAACGATTGGAA+GGG - Chr1:81879274-81879293 None:intergenic 35.0%
AAGGGATGAAATTGGATAGA+CGG - Chr1:81880236-81880255 None:intergenic 35.0%
AATTAATTCCGAAGAGTTGG+TGG - Chr1:81878306-81878325 None:intergenic 35.0%
ACAAACGCAGATAACATAAC+AGG - Chr1:81878849-81878868 None:intergenic 35.0%
ACCAACTCTTCGGAATTAAT+TGG + Chr1:81878305-81878324 MsG0180004727.01.T01:five_prime_UTR 35.0%
ACCAATTAATTCCGAAGAGT+TGG - Chr1:81878309-81878328 None:intergenic 35.0%
AGAAAGAAAACCATTTCTCC+AGG + Chr1:81880864-81880883 MsG0180004727.01.T01:intron 35.0%
AGATTGAGAAATAAAGGGGA+AGG - Chr1:81881479-81881498 None:intergenic 35.0%
AGCAAACATTAGATAGCCAA+TGG - Chr1:81880634-81880653 None:intergenic 35.0%
ATAAACCCATGTCTGATACA+TGG + Chr1:81879028-81879047 MsG0180004727.01.T01:intron 35.0%
ATAATCTGCTTTCCTATGGT+GGG + Chr1:81879968-81879987 MsG0180004727.01.T01:intron 35.0%
ATGGTTTACACTTGCCAAAA+GGG - Chr1:81881991-81882010 None:intergenic 35.0%
CAAGTGTAAACCATCAAAAG+TGG + Chr1:81881997-81882016 MsG0180004727.01.T01:intron 35.0%
CCAATCAACAAAAACAAGTG+AGG - Chr1:81878954-81878973 None:intergenic 35.0%
CTTGACACTCATAAATCTGA+AGG - Chr1:81881289-81881308 None:intergenic 35.0%
CTTGGGAAGCAAATTAAAGA+TGG + Chr1:81881742-81881761 MsG0180004727.01.T01:CDS 35.0%
GAACTTATGTGAATATGGGA+TGG - Chr1:81878261-81878280 None:intergenic 35.0%
GAAGAAAGATGCTAAGAAGA+AGG + Chr1:81880147-81880166 MsG0180004727.01.T01:exon 35.0%
GAGTGTCAAGTAACTTCTAA+GGG + Chr1:81881299-81881318 MsG0180004727.01.T01:intron 35.0%
GATCACAATGAAAACACTCA+AGG + Chr1:81881618-81881637 MsG0180004727.01.T01:CDS 35.0%
TGAGGGTTTAGAAAGAGAAA+TGG + Chr1:81878123-81878142 MsG0180004727.01.T01:five_prime_UTR 35.0%
TGAGTGTCAAGTAACTTCTA+AGG + Chr1:81881298-81881317 MsG0180004727.01.T01:intron 35.0%
TGGCTTCCTTCAACTAAAAA+TGG - Chr1:81882615-81882634 None:intergenic 35.0%
TGGTTACTTGTGAGCAATAA+TGG + Chr1:81880757-81880776 MsG0180004727.01.T01:intron 35.0%
TGTAAACATATATGGCTGAG+TGG + Chr1:81881026-81881045 MsG0180004727.01.T01:intron 35.0%
TGTAATTATGTCGTGAGTGT+AGG - Chr1:81879142-81879161 None:intergenic 35.0%
! AGAAGTATACCTGAAAAGTG+AGG - Chr1:81880547-81880566 None:intergenic 35.0%
! CATTTGGGACAAATGAAATG+AGG + Chr1:81882792-81882811 MsG0180004727.01.T01:three_prime_UTR 35.0%
! CTTTCCTTGTCTTCTGTTTT+CGG - Chr1:81880376-81880395 None:intergenic 35.0%
! CTTTTACAGCCAATAGGTTT+GGG + Chr1:81881547-81881566 MsG0180004727.01.T01:intron 35.0%
! GAACTAATTTTTGTGTGTGC+TGG + Chr1:81882875-81882894 MsG0180004727.01.T01:three_prime_UTR 35.0%
! GCAATTTTTCCCAAACCTAT+TGG - Chr1:81881559-81881578 None:intergenic 35.0%
! GGAAGAGTTTTCCAAATTGA+AGG + Chr1:81879849-81879868 MsG0180004727.01.T01:intron 35.0%
! GGAGAAATGGTTTTCTTTCT+TGG - Chr1:81880864-81880883 None:intergenic 35.0%
! GGTTTGAAGTTATTACCATC+TGG + Chr1:81880086-81880105 MsG0180004727.01.T01:intron 35.0%
! TATCTAATGTTTGCTGCATC+AGG + Chr1:81880639-81880658 MsG0180004727.01.T01:intron 35.0%
! TCTTTTACAGCCAATAGGTT+TGG + Chr1:81881546-81881565 MsG0180004727.01.T01:intron 35.0%
! TTCTTGTTGGTTGTACAGTT+TGG + Chr1:81878907-81878926 MsG0180004727.01.T01:intron 35.0%
! TTTCCTTGTCTTCTGTTTTC+GGG - Chr1:81880375-81880394 None:intergenic 35.0%
!! ATAAGTGTTTTTGAGGACCA+CGG + Chr1:81881850-81881869 MsG0180004727.01.T01:intron 35.0%
!! GCAGCTTGTTTTTCATGATA+TGG + Chr1:81878875-81878894 MsG0180004727.01.T01:intron 35.0%
!! GCTCTAAAACCTTGAAAATC+TGG - Chr1:81880311-81880330 None:intergenic 35.0%
!! TCGATTTTGCTATGAAGAGT+TGG + Chr1:81882118-81882137 MsG0180004727.01.T01:intron 35.0%
!! TTATTTCTGGGTTACATGTG+AGG + Chr1:81879828-81879847 MsG0180004727.01.T01:intron 35.0%
!!! ATTTTTAGTTGAAGGAAGCC+AGG + Chr1:81882614-81882633 MsG0180004727.01.T01:CDS 35.0%
!!! CCTCACTTGTTTTTGTTGAT+TGG + Chr1:81878951-81878970 MsG0180004727.01.T01:intron 35.0%
!!! TGACAGCCATGTTTTAACTT+TGG + Chr1:81882020-81882039 MsG0180004727.01.T01:intron 35.0%
!!! TTATCCTTTTGTTTTGGAGG+AGG - Chr1:81882549-81882568 None:intergenic 35.0%
!!! TTTTAGAGCTTACAGTCTTC+TGG + Chr1:81880322-81880341 MsG0180004727.01.T01:CDS 35.0%
AAAGATACGAGCTTGAACCA+CGG - Chr1:81881436-81881455 None:intergenic 40.0%
ACCTGAAAAGTGAGGCTAAA+TGG - Chr1:81880539-81880558 None:intergenic 40.0%
ACGCGGAACTTATGTGAATA+TGG - Chr1:81878266-81878285 None:intergenic 40.0%
ACTCACAACAAATCCGTTCT+CGG + Chr1:81880206-81880225 MsG0180004727.01.T01:CDS 40.0%
AGGGATGAAATTGGATAGAC+GGG - Chr1:81880235-81880254 None:intergenic 40.0%
ATTACCATACACAGGATGCA+GGG + Chr1:81881716-81881735 MsG0180004727.01.T01:intron 40.0%
ATTTAACTGAGCTGACCTAC+TGG - Chr1:81882645-81882664 None:intergenic 40.0%
CAAAGCAGTAGAGAAAAAGG+AGG - Chr1:81879238-81879257 None:intergenic 40.0%
CACCATAGGAAAGCAGATTA+TGG - Chr1:81879969-81879988 None:intergenic 40.0%
CATAATCTGCTTTCCTATGG+TGG + Chr1:81879967-81879986 MsG0180004727.01.T01:intron 40.0%
CCTGAAAAGTGAGGCTAAAT+GGG - Chr1:81880538-81880557 None:intergenic 40.0%
CGAAAACAGAAGACAAGGAA+AGG + Chr1:81880374-81880393 MsG0180004727.01.T01:CDS 40.0%
CGCGGAACTTATGTGAATAT+GGG - Chr1:81878265-81878284 None:intergenic 40.0%
CGGGCATTTCATCATTCAAT+TGG - Chr1:81878537-81878556 None:intergenic 40.0%
CTGATACATGGTGGCATTTA+GGG + Chr1:81879040-81879059 MsG0180004727.01.T01:intron 40.0%
GAATCAGAAATCCGTGTTTC+TGG + Chr1:81878737-81878756 MsG0180004727.01.T01:intron 40.0%
GACCAAAGCAGTAGAGAAAA+AGG - Chr1:81879241-81879260 None:intergenic 40.0%
GACCATAATCTGCTTTCCTA+TGG + Chr1:81879964-81879983 MsG0180004727.01.T01:intron 40.0%
GAGAGAGATGAGAATGAAGA+GGG - Chr1:81878163-81878182 None:intergenic 40.0%
GAGGTTCATAACCAGAAACA+CGG - Chr1:81878751-81878770 None:intergenic 40.0%
GATGGTTTACACTTGCCAAA+AGG - Chr1:81881992-81882011 None:intergenic 40.0%
GCCAAAGTGAACTACACATT+TGG - Chr1:81881255-81881274 None:intergenic 40.0%
GCCAAATGTGTAGTTCACTT+TGG + Chr1:81881251-81881270 MsG0180004727.01.T01:intron 40.0%
GTCGTGAGTGTAGGATAATA+GGG - Chr1:81879133-81879152 None:intergenic 40.0%
GTCGTGTTCGTGTATATATC+TGG - Chr1:81879680-81879699 None:intergenic 40.0%
TAATCTGCTTTCCTATGGTG+GGG + Chr1:81879969-81879988 MsG0180004727.01.T01:intron 40.0%
TAGACCTCCTCCAAAACAAA+AGG + Chr1:81882542-81882561 MsG0180004727.01.T01:CDS 40.0%
TATTACCATACACAGGATGC+AGG + Chr1:81881715-81881734 MsG0180004727.01.T01:intron 40.0%
TCTGATACATGGTGGCATTT+AGG + Chr1:81879039-81879058 MsG0180004727.01.T01:intron 40.0%
TGAAAATCTGGGTGAGCATT+GGG - Chr1:81880299-81880318 None:intergenic 40.0%
TGAGAGAGATGAGAATGAAG+AGG - Chr1:81878164-81878183 None:intergenic 40.0%
TGTCGTGAGTGTAGGATAAT+AGG - Chr1:81879134-81879153 None:intergenic 40.0%
TTCAGCTTCACAATGATGCT+CGG - Chr1:81880914-81880933 None:intergenic 40.0%
TTGAAAATCTGGGTGAGCAT+TGG - Chr1:81880300-81880319 None:intergenic 40.0%
! AATGCTCACCCAGATTTTCA+AGG + Chr1:81880299-81880318 MsG0180004727.01.T01:CDS 40.0%
! CTCCTTTTTCTCTACTGCTT+TGG + Chr1:81879236-81879255 MsG0180004727.01.T01:intron 40.0%
! TAATTTTTGTGTGTGCTGGG+AGG + Chr1:81882879-81882898 MsG0180004727.01.T01:three_prime_UTR 40.0%
! TTCCTTGTCTTCTGTTTTCG+GGG - Chr1:81880374-81880393 None:intergenic 40.0%
! TTGTAAGCGGTTTGCTCTAA+AGG + Chr1:81882711-81882730 MsG0180004727.01.T01:three_prime_UTR 40.0%
! TTGTTGTTGCTAGTGGTTGT+GGG - Chr1:81879206-81879225 None:intergenic 40.0%
!! GTGAGCATTGGGATTAAATG+TGG - Chr1:81880288-81880307 None:intergenic 40.0%
AAAGGGGAAGGATACCAAAC+AGG - Chr1:81881467-81881486 None:intergenic 45.0%
AACCACGTTTAGGCATCCTA+CGG - Chr1:81880508-81880527 None:intergenic 45.0%
AACCCATGTCTGATACATGG+TGG + Chr1:81879031-81879050 MsG0180004727.01.T01:intron 45.0%
AAGGGGAAGGATACCAAACA+GGG - Chr1:81881466-81881485 None:intergenic 45.0%
ACAAGGAAAGGTCGTGGTAT+TGG + Chr1:81880386-81880405 MsG0180004727.01.T01:CDS 45.0%
AGCCAGGAAAGGTTCAAAGT+TGG + Chr1:81880454-81880473 MsG0180004727.01.T01:CDS 45.0%
ATACATGGTGGCATTTAGGG+TGG + Chr1:81879043-81879062 MsG0180004727.01.T01:intron 45.0%
ATAGCCAATGGTCAAGTTCC+CGG - Chr1:81880622-81880641 None:intergenic 45.0%
ATCTTTGGACCTTCCCTGTT+TGG + Chr1:81881450-81881469 MsG0180004727.01.T01:intron 45.0%
ATGCCACCATGTATCAGACA+TGG - Chr1:81879037-81879056 None:intergenic 45.0%
ATGTATCGGGGTGGCATTTA+GGG - Chr1:81880013-81880032 None:intergenic 45.0%
CACGAACGTTGAAAGAGTGA+GGG - Chr1:81880265-81880284 None:intergenic 45.0%
CATCAGTTCCACCAACTCTT+CGG + Chr1:81878295-81878314 MsG0180004727.01.T01:five_prime_UTR 45.0%
CCAATGGCCAATTCATCTAG+AGG + Chr1:81881798-81881817 MsG0180004727.01.T01:CDS 45.0%
CCACTAGCAACAACAACTTC+AGG + Chr1:81879210-81879229 MsG0180004727.01.T01:intron 45.0%
CCAGGAAAGGTTCAAAGTTG+GGG + Chr1:81880456-81880475 MsG0180004727.01.T01:CDS 45.0%
CCTCTAGATGAATTGGCCAT+TGG - Chr1:81881801-81881820 None:intergenic 45.0%
CCTGAGTGGTTTGAGAAGAA+AGG + Chr1:81882498-81882517 MsG0180004727.01.T01:CDS 45.0%
CCTTTCTTCTCAAACCACTC+AGG - Chr1:81882501-81882520 None:intergenic 45.0%
GCCAGGAAAGGTTCAAAGTT+GGG + Chr1:81880455-81880474 MsG0180004727.01.T01:CDS 45.0%
GGGAAAGAATTTCCCACCAT+AGG + Chr1:81879070-81879089 MsG0180004727.01.T01:intron 45.0%
GGGTTCTTGAAACCACGTTT+AGG - Chr1:81880518-81880537 None:intergenic 45.0%
GTGGTTCAAGCTCGTATCTT+TGG + Chr1:81881435-81881454 MsG0180004727.01.T01:intron 45.0%
TACAGTCTCTCACGATGTCT+TGG + Chr1:81882740-81882759 MsG0180004727.01.T01:three_prime_UTR 45.0%
TAGTCATAAATCCCTAGCCG+TGG + Chr1:81881416-81881435 MsG0180004727.01.T01:intron 45.0%
TCAGATAACATGTATCGGGG+TGG - Chr1:81880022-81880041 None:intergenic 45.0%
TCAGCTTCACAATGATGCTC+GGG - Chr1:81880913-81880932 None:intergenic 45.0%
TGCCACCATGTATCAGACAT+GGG - Chr1:81879036-81879055 None:intergenic 45.0%
TTAACCGGGAACTTGACCAT+TGG + Chr1:81880615-81880634 MsG0180004727.01.T01:intron 45.0%
TTACCATACACAGGATGCAG+GGG + Chr1:81881717-81881736 MsG0180004727.01.T01:intron 45.0%
TTCCCCGAAAACAGAAGACA+AGG + Chr1:81880369-81880388 MsG0180004727.01.T01:CDS 45.0%
! AAAGGTCGTGGTATTGGATC+TGG + Chr1:81880392-81880411 MsG0180004727.01.T01:CDS 45.0%
! CAAAAGGGAAAAGAGAGTGC+AGG - Chr1:81881976-81881995 None:intergenic 45.0%
! CCTGAAGTTGTTGTTGCTAG+TGG - Chr1:81879213-81879232 None:intergenic 45.0%
! CGTGGTATTGGATCTGGAAA+GGG + Chr1:81880398-81880417 MsG0180004727.01.T01:CDS 45.0%
! CTGCACTCTCTTTTCCCTTT+TGG + Chr1:81881974-81881993 MsG0180004727.01.T01:intron 45.0%
! GTTGTTGTTGCTAGTGGTTG+TGG - Chr1:81879207-81879226 None:intergenic 45.0%
! TACATGGTGGCATTTAGGGT+GGG + Chr1:81879044-81879063 MsG0180004727.01.T01:intron 45.0%
! TCGTGGTATTGGATCTGGAA+AGG + Chr1:81880397-81880416 MsG0180004727.01.T01:CDS 45.0%
!! AAGAGTTGGTGGAACTGATG+CGG - Chr1:81878295-81878314 None:intergenic 45.0%
!! ATGGCTGTCACCACTTTTGA+TGG - Chr1:81882010-81882029 None:intergenic 45.0%
!! CAGGAAGTGTTACTTCCAGA+TGG - Chr1:81880104-81880123 None:intergenic 45.0%
!! CCCATTTAGCCTCACTTTTC+AGG + Chr1:81880535-81880554 MsG0180004727.01.T01:CDS 45.0%
!! GTGGTTCTGAGAAGATCCAA+TGG + Chr1:81881782-81881801 MsG0180004727.01.T01:CDS 45.0%
!!! TTTTTTTTAACATTTTTTAA+CGG + Chr1:81880042-81880061 MsG0180004727.01.T01:intron 5.0%
AAAGAGTGAGGGAGCTGCAA+GGG - Chr1:81880254-81880273 None:intergenic 50.0%
AAAGGGAAAGACTGCTGGGA+GGG + Chr1:81880415-81880434 MsG0180004727.01.T01:CDS 50.0%
AGGTAACAAGGGTCACTGTC+AGG + Chr1:81882394-81882413 MsG0180004727.01.T01:intron 50.0%
CAGAAGACAAGGAAAGGTCG+TGG + Chr1:81880380-81880399 MsG0180004727.01.T01:CDS 50.0%
CATGTATCGGGGTGGCATTT+AGG - Chr1:81880014-81880033 None:intergenic 50.0%
CCCCAACTTTGAACCTTTCC+TGG - Chr1:81880459-81880478 None:intergenic 50.0%
CTGGAAAGGGAAAGACTGCT+GGG + Chr1:81880411-81880430 MsG0180004727.01.T01:CDS 50.0%
GAGGATGGAGGAGAGAGAAA+GGG - Chr1:81879174-81879193 None:intergenic 50.0%
GATAGACGGGTATCCGAGAA+CGG - Chr1:81880222-81880241 None:intergenic 50.0%
GCACGAACGTTGAAAGAGTG+AGG - Chr1:81880266-81880285 None:intergenic 50.0%
GGAAGGATACCAAACAGGGA+AGG - Chr1:81881462-81881481 None:intergenic 50.0%
GGAGCTGCAAGGGATGAAAT+TGG - Chr1:81880244-81880263 None:intergenic 50.0%
GGGAAAGAATTCCCCACCAT+AGG - Chr1:81879983-81880002 None:intergenic 50.0%
GGTAACAAGGGTCACTGTCA+GGG + Chr1:81882395-81882414 MsG0180004727.01.T01:intron 50.0%
GGTTCAAAGTTGGGGTTCGA+AGG + Chr1:81880464-81880483 MsG0180004727.01.T01:CDS 50.0%
TAGTGGTTGTGGGTGAGTGT+GGG - Chr1:81879196-81879215 None:intergenic 50.0%
TCAAAGTTGGGGTTCGAAGG+AGG + Chr1:81880467-81880486 MsG0180004727.01.T01:CDS 50.0%
TCTGGAAAGGGAAAGACTGC+TGG + Chr1:81880410-81880429 MsG0180004727.01.T01:CDS 50.0%
TGGTGGAACTGATGCGGATT+CGG - Chr1:81878289-81878308 None:intergenic 50.0%
! TTGAACCTTTCCTGGCTCTC+TGG - Chr1:81880451-81880470 None:intergenic 50.0%
!! AGGATCAAAAGGCATCACCG+TGG - Chr1:81881870-81881889 None:intergenic 50.0%
AAAGGCCAGAGAGCCAGGAA+AGG + Chr1:81880443-81880462 MsG0180004727.01.T01:CDS 55.0%
AACTGATGCGGATTCGGACG+CGG - Chr1:81878283-81878302 None:intergenic 55.0%
AAGCAGTTGAAGCGGCTGGT+GGG + Chr1:81882424-81882443 MsG0180004727.01.T01:CDS 55.0%
AAGGAAGCAGTTGAAGCGGC+TGG + Chr1:81882420-81882439 MsG0180004727.01.T01:CDS 55.0%
AAGGGAAAGACTGCTGGGAG+GGG + Chr1:81880416-81880435 MsG0180004727.01.T01:CDS 55.0%
ACGAGCTTGAACCACGGCTA+GGG - Chr1:81881430-81881449 None:intergenic 55.0%
AGAAGAGGAGAATGCTCCGC+GGG - Chr1:81878214-81878233 None:intergenic 55.0%
AGCCGCTTCAACTGCTTCCT+TGG - Chr1:81882421-81882440 None:intergenic 55.0%
CTAGTGGTTGTGGGTGAGTG+TGG - Chr1:81879197-81879216 None:intergenic 55.0%
GAAAGAGTGAGGGAGCTGCA+AGG - Chr1:81880255-81880274 None:intergenic 55.0%
GAAAGGGAAAGACTGCTGGG+AGG + Chr1:81880414-81880433 MsG0180004727.01.T01:CDS 55.0%
GAGAAGAGGAGAATGCTCCG+CGG - Chr1:81878215-81878234 None:intergenic 55.0%
GATGGAGGAGAGAGAAAGGG+AGG - Chr1:81879171-81879190 None:intergenic 55.0%
GCTGACCTACTGGAAGATCC+TGG - Chr1:81882635-81882654 None:intergenic 55.0%
GCTGAGTGGCTTGACTGTGT+TGG + Chr1:81881040-81881059 MsG0180004727.01.T01:intron 55.0%
GGAAGCCAGGATCTTCCAGT+AGG + Chr1:81882627-81882646 MsG0180004727.01.T01:CDS 55.0%
GGAGGATGGAGGAGAGAGAA+AGG - Chr1:81879175-81879194 None:intergenic 55.0%
GGAGTAAGATTGATGGGGCG+TGG + Chr1:81881763-81881782 MsG0180004727.01.T01:CDS 55.0%
GGCCAAGGAAGCAGTTGAAG+CGG + Chr1:81882416-81882435 MsG0180004727.01.T01:CDS 55.0%
GTACCCCTGCATCCTGTGTA+TGG - Chr1:81881723-81881742 None:intergenic 55.0%
GTGTGCTGGGAGGATGATGT+TGG + Chr1:81882889-81882908 MsG0180004727.01.T01:three_prime_UTR 55.0%
TACGAGCTTGAACCACGGCT+AGG - Chr1:81881431-81881450 None:intergenic 55.0%
TAGGCATCCTACGGCGAAGA+GGG - Chr1:81880499-81880518 None:intergenic 55.0%
TATCGGGGTGGCATTTAGGG+TGG - Chr1:81880010-81880029 None:intergenic 55.0%
TTAGGCATCCTACGGCGAAG+AGG - Chr1:81880500-81880519 None:intergenic 55.0%
! ATCGGGGTGGCATTTAGGGT+GGG - Chr1:81880009-81880028 None:intergenic 55.0%
! GGAATTGGCTTCTTCGGAGC+AGG - Chr1:81882594-81882613 None:intergenic 55.0%
! GGAGGAGGTCTAGCTGCTTT+AGG - Chr1:81882534-81882553 None:intergenic 55.0%
! GTGGCATTTAGGGTGGGTGA+GGG + Chr1:81879050-81879069 MsG0180004727.01.T01:intron 55.0%
! GTGGCATTTAGGGTGGGTGA+GGG - Chr1:81879069-81879050 None:intergenic 55.0%
!! ACACAGGATGCAGGGGTACT+TGG + Chr1:81881724-81881743 MsG0180004727.01.T01:intron 55.0%
!! CACAGGATGCAGGGGTACTT+GGG + Chr1:81881725-81881744 MsG0180004727.01.T01:intron 55.0%
!! GGGATGGCGAGAGTGTTAGA+CGG - Chr1:81878245-81878264 None:intergenic 55.0%
AAGAGGAGAATGCTCCGCGG+GGG - Chr1:81878212-81878231 None:intergenic 60.0%
AAGGGTCACTGTCAGGGCCA+AGG + Chr1:81882401-81882420 MsG0180004727.01.T01:CDS 60.0%
ACTGCTGGGAGGGGTCACAA+AGG + Chr1:81880425-81880444 MsG0180004727.01.T01:CDS 60.0%
AGGCATCCTACGGCGAAGAG+GGG - Chr1:81880498-81880517 None:intergenic 60.0%
CGCCGTAGGATGCCTAAACG+TGG + Chr1:81880503-81880522 MsG0180004727.01.T01:CDS 60.0%
GAAGAGGAGAATGCTCCGCG+GGG - Chr1:81878213-81878232 None:intergenic 60.0%
GAAGCAGTTGAAGCGGCTGG+TGG + Chr1:81882423-81882442 MsG0180004727.01.T01:CDS 60.0%
GGAGGAGAGAGAAAGGGAGG+TGG - Chr1:81879168-81879187 None:intergenic 60.0%
GTCACAAAGGCCAGAGAGCC+AGG + Chr1:81880438-81880457 MsG0180004727.01.T01:CDS 60.0%
TAGACGGCACGGTGGAGAAG+AGG - Chr1:81878229-81878248 None:intergenic 60.0%
TCCTACGGCGAAGAGGGGTT+TGG - Chr1:81880493-81880512 None:intergenic 60.0%
TGGTTGTGGGTGAGTGTGGG+AGG - Chr1:81879193-81879212 None:intergenic 60.0%
TGTGGGTGAGTGTGGGAGGA+TGG - Chr1:81879189-81879208 None:intergenic 60.0%
! GGGCACTGTTGAAGCCTGAG+TGG + Chr1:81882484-81882503 MsG0180004727.01.T01:CDS 60.0%
! GGTGGCATTTAGGGTGGGTG+AGG + Chr1:81879049-81879068 MsG0180004727.01.T01:intron 60.0%
! GGTGGCATTTAGGGTGGGTG+AGG - Chr1:81879068-81879049 None:intergenic 60.0%
!! GAGAGTGTTAGACGGCACGG+TGG - Chr1:81878237-81878256 None:intergenic 60.0%
!! GGCGAGAGTGTTAGACGGCA+CGG - Chr1:81878240-81878259 None:intergenic 60.0%
AGAATGCTCCGCGGGGGTCA+GGG - Chr1:81878206-81878225 None:intergenic 65.0%
GCCAAACCCCTCTTCGCCGT+AGG + Chr1:81880489-81880508 MsG0180004727.01.T01:CDS 65.0%
GGGTGAGTGTGGGAGGATGG+AGG - Chr1:81879186-81879205 None:intergenic 65.0%
! GGCTGGTGGGTCCGTCAGAA+AGG + Chr1:81882437-81882456 MsG0180004727.01.T01:CDS 65.0%
GAGAATGCTCCGCGGGGGTC+AGG - Chr1:81878207-81878226 None:intergenic 70.0%
AGCAGCCTCCCTGACCCCCG+CGG + Chr1:81878195-81878214 MsG0180004727.01.T01:five_prime_UTR 75.0%
ATGCTCCGCGGGGGTCAGGG+AGG - Chr1:81878203-81878222 None:intergenic 75.0%
! GCGGGGGTCAGGGAGGCTGC+TGG - Chr1:81878196-81878215 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
Chr1 gene 81878095 81882946 81878095 ID=MsG0180004727.01;Name=MsG0180004727.01
Chr1 mRNA 81878095 81882946 81878095 ID=MsG0180004727.01.T01;Parent=MsG0180004727.01;Name=MsG0180004727.01.T01;_AED=0.36;_eAED=0.36;_QI=300|1|1|1|0.75|0.6|5|284|280
Chr1 exon 81878095 81878326 81878095 ID=MsG0180004727.01.T01:exon:34521;Parent=MsG0180004727.01.T01
Chr1 exon 81880087 81880556 81880087 ID=MsG0180004727.01.T01:exon:34522;Parent=MsG0180004727.01.T01
Chr1 exon 81881556 81881639 81881556 ID=MsG0180004727.01.T01:exon:34523;Parent=MsG0180004727.01.T01
Chr1 exon 81881730 81881819 81881730 ID=MsG0180004727.01.T01:exon:34524;Parent=MsG0180004727.01.T01
Chr1 exon 81882396 81882946 81882396 ID=MsG0180004727.01.T01:exon:34525;Parent=MsG0180004727.01.T01
Chr1 five_prime_UTR 81878095 81878326 81878095 ID=MsG0180004727.01.T01:five_prime_utr;Parent=MsG0180004727.01.T01
Chr1 five_prime_UTR 81880087 81880154 81880087 ID=MsG0180004727.01.T01:five_prime_utr;Parent=MsG0180004727.01.T01
Chr1 CDS 81880155 81880556 81880155 ID=MsG0180004727.01.T01:cds;Parent=MsG0180004727.01.T01
Chr1 CDS 81881556 81881639 81881556 ID=MsG0180004727.01.T01:cds;Parent=MsG0180004727.01.T01
Chr1 CDS 81881730 81881819 81881730 ID=MsG0180004727.01.T01:cds;Parent=MsG0180004727.01.T01
Chr1 CDS 81882396 81882662 81882396 ID=MsG0180004727.01.T01:cds;Parent=MsG0180004727.01.T01
Chr1 three_prime_UTR 81882663 81882946 81882663 ID=MsG0180004727.01.T01:three_prime_utr;Parent=MsG0180004727.01.T01
Gene Sequence

>MsG0180004727.01.T01

ATGCTAAGAAGAAGGCTTTCTGTTCTCTCGACTTCAATCATCAGAAGTTCGACTCACAACAAATCCGTTCTCGGATACCCGTCTATCCAATTTCATCCCTTGCAGCTCCCTCACTCTTTCAACGTTCGTGCCACATTTAATCCCAATGCTCACCCAGATTTTCAAGGTTTTAGAGCTTACAGTCTTCTGGCCTTGAATGATCTGAGAGATAATGTTCCCCGAAAACAGAAGACAAGGAAAGGTCGTGGTATTGGATCTGGAAAGGGAAAGACTGCTGGGAGGGGTCACAAAGGCCAGAGAGCCAGGAAAGGTTCAAAGTTGGGGTTCGAAGGAGGCCAAACCCCTCTTCGCCGTAGGATGCCTAAACGTGGTTTCAAGAACCCATTTAGCCTCACTTTTCAGCCAATAGGTTTGGGAAAAATTGCAACATTTATCAATGCTGGCAAGATAGATTCTTCTGAATTGATCACAATGAAAACACTCAAGGATGCAGGGGTACTTGGGAAGCAAATTAAAGATGGAGTAAGATTGATGGGGCGTGGTTCTGAGAAGATCCAATGGCCAATTCATCTAGAGGTAACAAGGGTCACTGTCAGGGCCAAGGAAGCAGTTGAAGCGGCTGGTGGGTCCGTCAGAAAGGTGTATTACAATAAGTTAGGCTTTCGGGCACTGTTGAAGCCTGAGTGGTTTGAGAAGAAAGGAAGATTGTTGCCTAAAGCAGCTAGACCTCCTCCAAAACAAAAGGATAAAGTTGATAGCATTGGACGGCTGCCTGCTCCGAAGAAGCCAATTCCATTTTTAGTTGAAGGAAGCCAGGATCTTCCAGTAGGTCAGCTCAGTTAA
Protein sequence

>MsG0180004727.01.T01

MLRRRLSVLSTSIIRSSTHNKSVLGYPSIQFHPLQLPHSFNVRATFNPNAHPDFQGFRAYSLLALNDLRDNVPRKQKTRKGRGIGSGKGKTAGRGHKGQRARKGSKLGFEGGQTPLRRRMPKRGFKNPFSLTFQPIGLGKIATFINAGKIDSSELITMKTLKDAGVLGKQIKDGVRLMGRGSEKIQWPIHLEVTRVTVRAKEAVEAAGGSVRKVYYNKLGFRALLKPEWFEKKGRLLPKAARPPPKQKDKVDSIGRLPAPKKPIPFLVEGSQDLPVGQLS*