AlfalfaGEDB | MsG0780040786.01

M. sativa cultivar ZhongmuNo.1 / MsG0780040786.01

KEGG: -
GO: GO:0005515 GO:0005634 GO:0008270 GO:0018024 GO:0034968
PFAM: PF00856 PF05033 PF10440

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780040786.01.T01	XP_039683657.1	90.282	710	30	3	1	709	1	672	0	1261
MsG0780040786.01.T02	XP_039683657.1	90.282	710	30	3	1	709	1	672	0	1261

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780040786.01.T01	Q9FNC7	37.161	775	322	23	1	709	1	676	9.37E-131	407
MsG0780040786.01.T02	Q9FNC7	37.161	775	322	23	1	709	1	676	9.37E-131	407

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780040786.01.T01	G7KXF3	90.282	710	30	3	1	709	1	672	0.0	1261
MsG0780040786.01.T02	G7KXF3	90.282	710	30	3	1	709	1	672	0.0	1261

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TFs/TRs:

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Gene ID	Type	Classification
MsG0780040786.01.T01	TR	SET
MsG0780040786.01.T02	TR	SET

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0180004727.01	MsG0780040786.01	0.848979	4.340493e-60	8.107024e-57
MsG0180006231.01	MsG0780040786.01	0.803078	4.139376e-49	2.060865e-46
MsG0380015340.01	MsG0780040786.01	0.807420	5.099297e-50	2.838937e-47
MsG0380016165.01	MsG0780040786.01	0.841622	4.249723e-58	6.280524e-55
MsG0480020997.01	MsG0780040786.01	0.805078	1.588239e-49	8.325161e-47
MsG0480021844.01	MsG0780040786.01	0.817997	2.466341e-52	1.823879e-49
MsG0480021902.01	MsG0780040786.01	0.805205	1.493778e-49	7.855752e-47
MsG0580025186.01	MsG0780040786.01	0.824671	7.113753e-54	6.344306e-51
MsG0780036553.01	MsG0780040786.01	0.811678	6.209702e-51	3.867918e-48
MsG0780038736.01	MsG0780040786.01	0.806149	9.465914e-50	5.100080e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780040786.01.T01	MTR_7g098390	90.282	710	30	3	1	709	1	672	0.0	1261
MsG0780040786.01.T01	MTR_1g069570	47.362	777	274	18	3	709	5	716	0.0	586
MsG0780040786.01.T01	MTR_1g069570	49.003	702	260	17	3	634	5	678	0.0	546
MsG0780040786.01.T01	MTR_1g080340	51.385	325	118	3	388	709	269	556	1.36e-113	356
MsG0780040786.01.T01	MTR_1g080340	38.261	115	71	0	1	115	1	115	3.54e-16	82.8
MsG0780040786.01.T01	MTR_8g106570	49.751	201	79	3	388	585	118	299	1.21e-61	209
MsG0780040786.01.T01	MTR_1g064770	71.429	70	20	0	509	578	22	91	4.03e-32	120
MsG0780040786.01.T01	MTR_5g013420	27.206	272	122	7	380	632	803	1017	2.84e-23	106
MsG0780040786.01.T01	MTR_5g013420	27.206	272	122	7	380	632	803	1017	3.13e-23	106
MsG0780040786.01.T01	MTR_7g088370	30.451	266	126	9	388	648	436	647	1.77e-20	97.1

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780040786.01.T01	AT5G43990	37.161	775	322	23	1	709	1	676	9.55e-132	407
MsG0780040786.01.T01	AT5G43990	37.161	775	322	23	1	709	1	676	9.55e-132	407
MsG0780040786.01.T01	AT5G43990	37.161	775	322	23	1	709	1	676	9.55e-132	407
MsG0780040786.01.T01	AT5G43990	37.161	775	322	23	1	709	1	676	9.55e-132	407
MsG0780040786.01.T01	AT5G43990	37.161	775	322	23	1	709	24	699	3.72e-131	406
MsG0780040786.01.T01	AT5G43990	37.161	775	322	23	1	709	24	699	3.72e-131	406
MsG0780040786.01.T01	AT3G04380	48.615	325	126	4	388	709	119	405	7.99e-110	342
MsG0780040786.01.T01	AT3G04380	48.615	325	126	4	388	709	146	432	8.37e-110	342
MsG0780040786.01.T01	AT3G04380	48.615	325	126	4	388	709	130	416	1.01e-109	342
MsG0780040786.01.T01	AT3G04380	48.615	325	126	4	388	709	146	432	1.48e-109	342

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Find 108 sgRNAs with CRISPR-Local

Find 621 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGACTAAAATGCCCCTA+GGG	0.533936	7:-82428902	MsG0780040786.01.T01:five_prime_UTR
AAAAGCGTATGGTTTGCATT+TGG	0.429293	7:-82427177	MsG0780040786.01.T01:five_prime_UTR
AAAATTGTAGAAGTTTGTTG+AGG	0.559942	7:-82428434	MsG0780040786.01.T01:five_prime_UTR
AAACAAAGATTAGGTATTTA+AGG	0.117892	7:+82427943	None:intergenic
AAAGACTAAAATGCCCCTAG+GGG	0.720161	7:-82428901	MsG0780040786.01.T01:five_prime_UTR
AAAGTAATTAATAATAAAAT+TGG	0.292590	7:-82429207	MsG0780040786.01.T01:five_prime_UTR
AAATGACCAAAATGCCCCTG+GGG	0.760610	7:-82429060	MsG0780040786.01.T01:five_prime_UTR
AACGATTAAAATTGACAAAA+CGG	0.463053	7:-82429150	MsG0780040786.01.T01:five_prime_UTR
AACGGACTAAAACGAACAAA+TGG	0.487151	7:-82429132	MsG0780040786.01.T01:five_prime_UTR
AAGAAATAAAATAACACAGT+GGG	0.573947	7:+82427436	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAACAACACTCTTGGAATT+TGG	+	Chr7:82427082-82427101	None:intergenic	30.0%
AAAGATTCTTCTGTTGCAAA+TGG	-	Chr7:82424907-82424926	MsG0780040786.01.T01:intron	30.0%
AACATAATCATGGACCAATT+TGG	+	Chr7:82428146-82428165	None:intergenic	30.0%
AAGAAAGATAAATGGCACAA+AGG	+	Chr7:82424396-82424415	None:intergenic	30.0%
AAGCCTGAAACTGATAAAAT+CGG	-	Chr7:82426951-82426970	MsG0780040786.01.T01:five_prime_UTR	30.0%
AATATGTCTCTATCTCGTAT+TGG	-	Chr7:82425285-82425304	MsG0780040786.01.T01:intron	30.0%
AATGACTTGAAATGCAAGAA+AGG	-	Chr7:82420937-82420956	MsG0780040786.01.T01:intron	30.0%
ACATGATAATAGTGATGAGA+TGG	+	Chr7:82427406-82427425	None:intergenic	30.0%
ACTATTATCATGTGAGAAGT+TGG	-	Chr7:82427413-82427432	MsG0780040786.01.T01:five_prime_UTR	30.0%
ATATGTCTCTATCTCGTATT+GGG	-	Chr7:82425286-82425305	MsG0780040786.01.T01:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	82420063	82429553	82420063	ID=MsG0780040786.01;Name=MsG0780040786.01
Chr7	mRNA	82420063	82429553	82420063	ID=MsG0780040786.01.T01;Parent=MsG0780040786.01;Name=MsG0780040786.01.T01;_AED=0.46;_eAED=0.47;_QI=2814\|0.72\|0.66\|1\|0.54\|0.41\|12\|522\|726
Chr7	exon	82426761	82426826	82426761	ID=MsG0780040786.01.T01:exon:38351;Parent=MsG0780040786.01.T01
Chr7	exon	82426936	82429553	82426936	ID=MsG0780040786.01.T01:exon:38350;Parent=MsG0780040786.01.T01
Chr7	five_prime_UTR	82426936	82429553	82426936	ID=MsG0780040786.01.T01:five_prime_utr;Parent=MsG0780040786.01.T01
Chr7	five_prime_UTR	82426761	82426826	82426761	ID=MsG0780040786.01.T01:five_prime_utr;Parent=MsG0780040786.01.T01
Chr7	five_prime_UTR	82426533	82426662	82426533	ID=MsG0780040786.01.T01:five_prime_utr;Parent=MsG0780040786.01.T01
Chr7	CDS	82426350	82426532	82426350	ID=MsG0780040786.01.T01:cds;Parent=MsG0780040786.01.T01
Chr7	CDS	82426219	82426251	82426219	ID=MsG0780040786.01.T01:cds;Parent=MsG0780040786.01.T01
Chr7	CDS	82425590	82426016	82425590	ID=MsG0780040786.01.T01:cds;Parent=MsG0780040786.01.T01
Chr7	CDS	82424939	82425114	82424939	ID=MsG0780040786.01.T01:cds;Parent=MsG0780040786.01.T01
Chr7	CDS	82423975	82424790	82423975	ID=MsG0780040786.01.T01:cds;Parent=MsG0780040786.01.T01
Chr7	CDS	82423523	82423821	82423523	ID=MsG0780040786.01.T01:cds;Parent=MsG0780040786.01.T01
Chr7	CDS	82422628	82422669	82422628	ID=MsG0780040786.01.T01:cds;Parent=MsG0780040786.01.T01
Chr7	CDS	82422193	82422292	82422193	ID=MsG0780040786.01.T01:cds;Parent=MsG0780040786.01.T01
Chr7	CDS	82422009	82422077	82422009	ID=MsG0780040786.01.T01:cds;Parent=MsG0780040786.01.T01
Chr7	CDS	82420585	82420620	82420585	ID=MsG0780040786.01.T01:cds;Parent=MsG0780040786.01.T01
Chr7	three_prime_UTR	82420063	82420584	82420063	ID=MsG0780040786.01.T01:three_prime_utr;Parent=MsG0780040786.01.T01
Chr7	mRNA	82420063	82426898	82420063	ID=MsG0780040786.01.T02;Parent=MsG0780040786.01;Name=MsG0780040786.01.T02;_AED=0.48;_eAED=0.50;_QI=268\|0.7\|0.63\|1\|0.6\|0.45\|11\|522\|726
Chr7	exon	82426761	82426898	82426761	ID=MsG0780040786.01.T02:exon:38362;Parent=MsG0780040786.01.T02
Chr7	five_prime_UTR	82426761	82426898	82426761	ID=MsG0780040786.01.T02:five_prime_utr;Parent=MsG0780040786.01.T02
Chr7	five_prime_UTR	82426533	82426662	82426533	ID=MsG0780040786.01.T02:five_prime_utr;Parent=MsG0780040786.01.T02
Chr7	CDS	82426350	82426532	82426350	ID=MsG0780040786.01.T02:cds;Parent=MsG0780040786.01.T02
Chr7	CDS	82426219	82426251	82426219	ID=MsG0780040786.01.T02:cds;Parent=MsG0780040786.01.T02
Chr7	CDS	82425590	82426016	82425590	ID=MsG0780040786.01.T02:cds;Parent=MsG0780040786.01.T02
Chr7	CDS	82424939	82425114	82424939	ID=MsG0780040786.01.T02:cds;Parent=MsG0780040786.01.T02
Chr7	CDS	82423975	82424790	82423975	ID=MsG0780040786.01.T02:cds;Parent=MsG0780040786.01.T02
Chr7	CDS	82423523	82423821	82423523	ID=MsG0780040786.01.T02:cds;Parent=MsG0780040786.01.T02
Chr7	CDS	82422628	82422669	82422628	ID=MsG0780040786.01.T02:cds;Parent=MsG0780040786.01.T02
Chr7	CDS	82422193	82422292	82422193	ID=MsG0780040786.01.T02:cds;Parent=MsG0780040786.01.T02
Chr7	CDS	82422009	82422077	82422009	ID=MsG0780040786.01.T02:cds;Parent=MsG0780040786.01.T02
Chr7	CDS	82420585	82420620	82420585	ID=MsG0780040786.01.T02:cds;Parent=MsG0780040786.01.T02
Chr7	three_prime_UTR	82420063	82420584	82420063	ID=MsG0780040786.01.T02:three_prime_utr;Parent=MsG0780040786.01.T02

Gene Sequence

>MsG0780040786.01.T01

ATGGCACCCAATCCCAAAGTTGTAGCTGCGTTCCGTGCAATGTCGTGCCTTGGGATTGAGGAACACAAAGTCAAACCTGTGTTGAAGAAACTGCTTAAATTGTATGATAAAAACTGGGAACTTATTGAAGAAGAGAATTATCGGGCTCTTGCTGATGCTATTTTCGACGAAGATGATAATCAGGCGTTGGAGCCGGAGCAGGAAAAGAAAAACAAGGAAGGGGAGGTGGATGAGGAAGCTCGTCCAGAAGAGCGAGTGAGGCCTTTGAAGAGGTTGAAATTAAGAGGCCAAGACGGGCGCCTTCTGAACAGCGGTGGCTCAAGTACAGCTGCCTTTGCATTGAAAACACCGAAACCAGAACCTGGTACAGTACCCGAAAGTAGTTCCAGACTGCTATCCAATGGAAATGCCGTTGTTGACAAGGGAAAGAAGCCTGCATCACCTGAAGAACCTCTAAGAGGGAGAAGATCTATATCTGACAGAACTCAACCTGCAGTCGCGTTTAGAGAACCGGCTGTTGAACCAGGAGCCTCTCTGTTGTCAAAAAGCAAAACGCCTCATGCTTACCCTTTTATCACCCCCAAGGATGAGCCTGTTGATGAAGTGGAATATGATTACGTCCCACTTTCAATTATTCTTCCTGAACCATCAAGTGTTCCAGATTCTTCAACGAAGAATGATACAGCCGGAGAGCAAGATGGCAACAACACTGTGGCATCACCATACAGAAACGAAAATGTTGAAGGTGAAGATATTCTTCCTTCCTCAAATGTAGAAGTGCCTTTTAATGCCGAGCTAGCCTCATCGTCTACGGGAGAGGAAGCATCTGTAAAGATAACGCCAACAGTTGGCCTTTCAAAAGAATCCGAGGCAAATGGCACACTAATTGACGGAGGAAATAAAGATTCTTCTGTTGCAAATGGATCAATCTCTGTCAAGTCTTCTTCTGCCTCGGTCGCACCTCAAGCTCTCGTTTCTTCACACTGCCCAAGTGGTCCAAATGATGCTGTACTAGTTTCCAAGGATGTAATGAATGATTTATCAGAAAATGGTGGTGGGAAGGAGTCAGGGGAACCTATGCCTCAAAATTCCTGCAATGTAATGAATGCTCCAAACCATCATCATACAATTGATGATACAAGGGCTGTTTGTGCTACCAATGACCTAACAAAGGGAGAAGAAAAAGTGAAAATTTCATGGGTGAATGATTCTAATAATGATATCCCACCTCCGTTCCACTACATACCCCGAAACTTGGTGTTCCGAGATGCATATGTTAATATGTCTCTATCTCGTATTGGGAGTGAAGATTGTTGTTCTACCTGTATGGGCAATTGTGTCTTATCATCTAAACCATGTTCTTGTGCAAATAAAACTGGAGGGGATTTTGCCTACACTGCACAAGGTGTACTAAAGGAAGAGTTCGTGGAAGAGTGTATTGCCATCAGCCGTGATCCACAAAATCATTCCTATTGCACAGAATGCCCACTTGAAATATCAAAGAATGATGGTTGTTTAGAACCATGTAAAGGACACTTGAAGAGGAAGTTTATTAAAGAGTGCTGGAGCAAATGTGGTTGTGGGAAACATTGTGGCAATCGGATTGTCCAACGTGGAATAACTTGCAACTTGCAGGTGTTTTTAACTTCAAACGGAAAAGGGTGGGGTCTTCGTACCTTAGAGGATCTTCCAAAAGGTGCATTTGTATGCGAGTTTGTTGGAGAAATTTTAACCGTCGAAGAGTTGCATGAGAGGAACTTGAAATATCCCAAAAATGGGAAACATACGTTCCCAATTTTATTGGATGCAGAATGGGACTCGGGAGTTGTAAAGGATAACCAAGCTCTTTGCTTATATGCGGCATCATATGGAAATGCTGCTAGGTTTATTAATCACAGGTATTACAATTTCTCATGTTTTAACAGAAGTTTTTTATGGAAGCCTGAAACTGATAAAATCGGGGGAACATGGAATCGAAGATTCTCAGTAATTCTATCCCGTTATGGCAGATGTTTAGATGCAAACTTGATTGAGATCCCGGTTGAAGTTGAGGGTCCATCTCATCACTATTATCATTTTGCCTTCTTCACATCCAGAAAAATCGCAGCACAGGAAGAGTTGACCTGGGTATGTCGATTTGGTTCTGAAGCATTAGATCGTCAATTGCTGGGTGATAGATAG

>MsG0780040786.01.T02

Protein sequence

>MsG0780040786.01.T01

MAPNPKVVAAFRAMSCLGIEEHKVKPVLKKLLKLYDKNWELIEEENYRALADAIFDEDDNQALEPEQEKKNKEGEVDEEARPEERVRPLKRLKLRGQDGRLLNSGGSSTAAFALKTPKPEPGTVPESSSRLLSNGNAVVDKGKKPASPEEPLRGRRSISDRTQPAVAFREPAVEPGASLLSKSKTPHAYPFITPKDEPVDEVEYDYVPLSIILPEPSSVPDSSTKNDTAGEQDGNNTVASPYRNENVEGEDILPSSNVEVPFNAELASSSTGEEASVKITPTVGLSKESEANGTLIDGGNKDSSVANGSISVKSSSASVAPQALVSSHCPSGPNDAVLVSKDVMNDLSENGGGKESGEPMPQNSCNVMNAPNHHHTIDDTRAVCATNDLTKGEEKVKISWVNDSNNDIPPPFHYIPRNLVFRDAYVNMSLSRIGSEDCCSTCMGNCVLSSKPCSCANKTGGDFAYTAQGVLKEEFVEECIAISRDPQNHSYCTECPLEISKNDGCLEPCKGHLKRKFIKECWSKCGCGKHCGNRIVQRGITCNLQVFLTSNGKGWGLRTLEDLPKGAFVCEFVGEILTVEELHERNLKYPKNGKHTFPILLDAEWDSGVVKDNQALCLYAASYGNAARFINHRYYNFSCFNRSFLWKPETDKIGGTWNRRFSVILSRYGRCLDANLIEIPVEVEGPSHHYYHFAFFTSRKIAAQEELTWVCRFGSEALDRQLLGDR*

>MsG0780040786.01.T02