AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180004756.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004756.01.T01 MTR_1g086210 96.154 572 22 0 1 572 1 572 0.0 1107
MsG0180004756.01.T01 MTR_7g110490 63.778 577 200 5 1 570 1 575 0.0 749
MsG0180004756.01.T01 MTR_7g110510 63.778 577 200 5 1 570 1 575 0.0 749
MsG0180004756.01.T01 MTR_7g110440 62.565 577 207 5 1 570 1 575 0.0 741
MsG0180004756.01.T01 MTR_1g086190 59.278 582 209 9 1 571 1 565 0.0 676
MsG0180004756.01.T01 MTR_7g110420 57.993 588 228 8 1 570 1 587 0.0 644
MsG0180004756.01.T01 MTR_7g110430 57.539 577 202 6 1 570 1 541 0.0 640
MsG0180004756.01.T01 MTR_7g110560 48.174 575 257 13 5 569 6 549 0.0 531
MsG0180004756.01.T01 MTR_4g124550 38.526 597 319 9 1 571 21 595 1.45e-143 428
MsG0180004756.01.T01 MTR_7g112590 38.926 596 318 14 2 571 10 585 2.45e-134 404
MsG0180004756.01.T01 MTR_1g083470 40.451 576 303 14 7 565 14 566 3.16e-133 401
MsG0180004756.01.T01 MTR_1g083500 40.451 576 303 14 7 565 14 566 3.16e-133 401
MsG0180004756.01.T01 MTR_8g088610 56.011 366 142 8 209 570 27 377 6.30e-133 393
MsG0180004756.01.T01 MTR_2g436040 38.298 564 314 11 4 567 15 544 5.00e-132 399
MsG0180004756.01.T01 MTR_1g083510 37.248 596 319 13 4 568 11 582 2.10e-131 396
MsG0180004756.01.T01 MTR_1g083490 37.990 587 313 14 4 565 11 571 1.01e-129 392
MsG0180004756.01.T01 MTR_4g120290 37.913 575 336 8 4 572 16 575 3.72e-128 388
MsG0180004756.01.T01 MTR_8g023310 40.257 544 288 11 41 569 68 589 4.69e-128 388
MsG0180004756.01.T01 MTR_8g104655 39.779 543 292 11 34 569 27 541 1.64e-127 385
MsG0180004756.01.T01 MTR_4g005170 37.649 587 315 14 4 565 11 571 2.03e-127 387
MsG0180004756.01.T01 MTR_2g044880 43.683 467 225 9 108 569 92 525 2.78e-127 384
MsG0180004756.01.T01 MTR_4g120280 39.405 538 305 9 38 572 56 575 4.35e-127 385
MsG0180004756.01.T01 MTR_2g436050 38.380 568 318 11 9 568 20 563 4.68e-125 379
MsG0180004756.01.T01 MTR_8g042900 39.811 530 286 12 41 565 76 577 1.44e-124 379
MsG0180004756.01.T01 MTR_7g108905 37.476 531 311 7 37 565 41 552 1.45e-123 375
MsG0180004756.01.T01 MTR_8g104645 49.860 357 163 4 217 569 28 372 1.23e-122 366
MsG0180004756.01.T01 MTR_3g010780 38.722 532 289 11 40 565 70 570 2.60e-122 372
MsG0180004756.01.T01 MTR_5g083620 51.852 351 156 6 224 570 16 357 1.14e-121 363
MsG0180004756.01.T01 MTR_4g005180 36.568 577 319 13 12 565 1 553 1.30e-121 370
MsG0180004756.01.T01 MTR_4g087980 40.938 469 234 7 108 570 86 517 1.46e-120 366
MsG0180004756.01.T01 MTR_7g050870 37.336 533 295 8 44 569 54 554 9.01e-119 362
MsG0180004756.01.T01 MTR_7g112580 37.153 541 296 11 38 569 37 542 3.18e-118 361
MsG0180004756.01.T01 MTR_7g050950 37.477 547 288 12 37 569 47 553 8.99e-117 357
MsG0180004756.01.T01 MTR_7g050980 36.348 564 323 9 12 569 22 555 9.99e-115 352
MsG0180004756.01.T01 MTR_2g044810 36.792 530 298 9 40 568 40 533 3.72e-114 350
MsG0180004756.01.T01 MTR_4g025730 41.239 468 226 10 103 569 90 509 9.33e-114 348
MsG0180004756.01.T01 MTR_1g008140 35.473 592 332 13 5 569 39 607 7.43e-113 349
MsG0180004756.01.T01 MTR_8g023150 37.079 534 297 11 40 565 76 578 3.00e-111 344
MsG0180004756.01.T01 MTR_4g025690 40.998 461 226 9 106 565 94 509 4.42e-111 341
MsG0180004756.01.T01 MTR_1g083520 40.127 471 245 10 107 570 89 529 6.38e-111 342
MsG0180004756.01.T01 MTR_3g091380 34.753 587 340 13 5 570 34 598 1.49e-110 343
MsG0180004756.01.T01 MTR_1g054880 37.407 540 311 11 42 569 34 558 2.94e-109 338
MsG0180004756.01.T01 MTR_4g087970 38.544 467 250 8 108 569 83 517 3.17e-108 334
MsG0180004756.01.T01 MTR_4g025670 37.882 491 256 9 87 568 38 488 1.81e-107 331
MsG0180004756.01.T01 MTR_4g124520 41.067 431 215 8 144 568 123 520 1.41e-105 327
MsG0180004756.01.T01 MTR_1g088020 39.583 480 257 9 108 569 91 555 2.31e-104 325
MsG0180004756.01.T01 MTR_7g108890 36.648 543 312 13 42 569 37 562 1.11e-103 324
MsG0180004756.01.T01 MTR_8g042910 38.340 506 234 12 108 570 143 613 8.48e-103 323
MsG0180004756.01.T01 MTR_7g108900 35.596 545 307 11 42 565 35 556 1.34e-102 321
MsG0180004756.01.T01 MTR_7g108875 36.096 543 301 8 45 565 42 560 2.33e-101 318
MsG0180004756.01.T01 MTR_1g088225 39.413 477 254 10 108 566 91 550 5.82e-101 317
MsG0180004756.01.T01 MTR_8g104580 35.543 543 282 13 34 569 19 500 1.67e-100 313
MsG0180004756.01.T01 MTR_4g035980 44.476 353 187 5 218 568 193 538 4.49e-99 311
MsG0180004756.01.T01 MTR_3g008700 42.145 401 219 8 175 569 134 527 5.08e-99 311
MsG0180004756.01.T01 MTR_3g010770 35.870 552 312 12 45 569 39 575 1.34e-98 311
MsG0180004756.01.T01 MTR_3g008640 40.741 432 228 9 159 569 103 527 5.67e-98 308
MsG0180004756.01.T01 MTR_3g033690 44.633 354 185 6 219 569 181 526 6.56e-97 305
MsG0180004756.01.T01 MTR_7g053360 41.147 401 223 8 175 569 134 527 3.34e-96 303
MsG0180004756.01.T01 MTR_3g008720 40.046 432 231 9 159 569 103 527 2.51e-95 301
MsG0180004756.01.T01 MTR_0458s0030 49.064 267 129 2 303 569 55 314 4.58e-85 267
MsG0180004756.01.T01 MTR_1g088040 49.064 267 129 2 303 569 55 314 4.58e-85 267
MsG0180004756.01.T01 MTR_0618s0020 52.564 234 105 1 336 569 1 228 5.72e-85 264
MsG0180004756.01.T01 MTR_7g111560 35.060 579 313 20 5 569 27 556 1.18e-83 271
MsG0180004756.01.T01 MTR_2g044810 48.047 256 126 2 313 568 216 464 1.25e-83 269
MsG0180004756.01.T01 MTR_8g093460 31.481 540 316 16 41 563 43 545 6.99e-83 270
MsG0180004756.01.T01 MTR_3g095920 29.715 562 319 17 41 570 48 565 4.74e-78 257
MsG0180004756.01.T01 MTR_5g083590 42.722 316 124 5 255 569 9 268 3.86e-75 240
MsG0180004756.01.T01 MTR_2g105560 36.991 319 181 5 252 569 40 339 3.44e-64 214
MsG0180004756.01.T01 MTR_0458s0010 32.854 487 237 14 108 566 91 515 1.65e-62 214
MsG0180004756.01.T01 MTR_7g107180 34.169 319 192 5 252 569 6 307 3.84e-57 194
MsG0180004756.01.T01 MTR_6g042660 36.027 297 165 6 236 525 18 296 2.39e-51 179
MsG0180004756.01.T01 MTR_2g039530 34.983 303 179 6 230 529 31 318 4.09e-50 176
MsG0180004756.01.T01 MTR_2g436070 34.043 329 187 9 4 324 15 321 4.11e-48 172
MsG0180004756.01.T01 MTR_6g024165 34.603 315 172 9 255 558 43 334 5.56e-48 171
MsG0180004756.01.T01 MTR_1g033050 32.971 276 165 4 257 525 22 284 4.06e-46 165
MsG0180004756.01.T01 MTR_6g012800 32.923 325 188 9 255 566 8 315 1.19e-45 164
MsG0180004756.01.T01 MTR_7g092780 33.131 329 186 7 247 559 78 388 1.24e-45 166
MsG0180004756.01.T01 MTR_6g088810 35.452 299 163 7 261 546 90 371 2.05e-44 162
MsG0180004756.01.T01 MTR_7g011530 31.373 306 186 6 255 550 8 299 2.10e-43 157
MsG0180004756.01.T01 MTR_7g102600 32.143 308 184 5 258 558 104 393 3.05e-42 156
MsG0180004756.01.T01 MTR_1g086540 33.808 281 164 5 255 525 52 320 6.11e-41 152
MsG0180004756.01.T01 MTR_8g036225 34.551 301 169 6 255 546 35 316 5.58e-40 149
MsG0180004756.01.T01 MTR_8g102380 33.226 310 171 7 254 546 81 371 1.21e-39 149
MsG0180004756.01.T01 MTR_6g042690 33.793 290 158 8 249 525 35 303 3.91e-39 146
MsG0180004756.01.T01 MTR_5g012600 31.169 308 180 7 248 535 56 351 3.47e-37 142
MsG0180004756.01.T01 MTR_2g033970 32.362 309 182 6 258 560 61 348 3.94e-37 141
MsG0180004756.01.T01 MTR_5g093970 32.026 306 187 6 254 558 44 329 4.95e-37 140
MsG0180004756.01.T01 MTR_2g073390 31.208 298 182 7 250 540 68 349 3.98e-35 136
MsG0180004756.01.T01 MTR_4g074290 31.387 274 170 5 255 522 73 334 4.85e-35 135
MsG0180004756.01.T01 MTR_5g088300 30.719 306 186 6 254 559 38 317 1.70e-34 133
MsG0180004756.01.T01 MTR_5g088290 31.046 306 184 6 254 558 49 328 2.55e-34 133
MsG0180004756.01.T01 MTR_4g124740 30.492 305 176 9 255 548 56 335 4.35e-34 132
MsG0180004756.01.T01 MTR_0009s0350 30.263 304 183 8 255 548 73 357 6.63e-34 132
MsG0180004756.01.T01 MTR_0009s0340 30.263 304 183 8 255 548 73 357 6.63e-34 132
MsG0180004756.01.T01 MTR_5g095490 30.351 313 185 7 259 559 67 358 7.94e-34 132
MsG0180004756.01.T01 MTR_5g088280 30.380 316 193 7 244 558 29 318 2.79e-33 130
MsG0180004756.01.T01 MTR_4g051810 31.373 306 181 9 255 558 39 317 1.15e-32 128
MsG0180004756.01.T01 MTR_8g102380 33.716 261 140 6 254 497 81 325 8.84e-32 125
MsG0180004756.01.T01 MTR_2g436600 29.338 317 172 10 258 560 60 338 1.27e-30 122
MsG0180004756.01.T01 MTR_6g025590 37.037 189 109 5 238 418 36 222 5.18e-26 107
MsG0180004756.01.T01 MTR_0408s0030 34.021 97 55 1 429 525 36 123 4.63e-15 73.2
MsG0180004756.01.T01 MTR_4g130790 28.774 212 120 7 243 437 26 223 1.70e-14 74.3
MsG0180004756.01.T01 MTR_7g108790 28.777 139 98 1 37 175 30 167 3.68e-12 65.9
MsG0180004756.01.T01 MTR_2g044660 23.894 226 142 5 1 206 21 236 1.68e-11 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004756.01.T01 AT2G26450 41.078 538 283 11 39 572 107 614 3.97e-140 419
MsG0180004756.01.T01 AT2G47030 40.984 610 297 17 1 569 1 588 4.44e-139 416
MsG0180004756.01.T01 AT3G05610 40.870 575 303 15 5 569 18 565 4.46e-137 414
MsG0180004756.01.T01 AT2G47040 39.675 615 305 14 1 569 1 595 8.14e-137 410
MsG0180004756.01.T01 AT3G62170 40.331 605 303 14 3 569 4 588 1.85e-136 409
MsG0180004756.01.T01 AT5G27870 40.105 571 309 14 5 569 19 562 1.89e-135 411
MsG0180004756.01.T01 AT5G49180 38.687 579 325 12 4 570 11 571 1.21e-132 399
MsG0180004756.01.T01 AT4G33230 40.370 540 293 10 39 572 93 609 2.64e-132 399
MsG0180004756.01.T01 AT3G14310 39.927 551 292 10 41 569 59 592 2.27e-131 396
MsG0180004756.01.T01 AT1G53830 38.993 536 310 8 41 569 62 587 1.36e-124 379
MsG0180004756.01.T01 AT3G10710 37.217 575 312 13 5 569 26 561 6.72e-122 371
MsG0180004756.01.T01 AT3G06830 37.409 548 312 10 28 565 38 564 1.34e-121 370
MsG0180004756.01.T01 AT1G53840 37.618 529 306 10 40 563 72 581 5.59e-119 364
MsG0180004756.01.T01 AT4G33220 40.340 471 263 5 105 569 65 523 2.17e-117 358
MsG0180004756.01.T01 AT3G05620 38.787 544 279 14 41 569 37 541 6.63e-116 355
MsG0180004756.01.T01 AT5G04960 36.538 572 310 12 10 569 34 564 3.23e-115 354
MsG0180004756.01.T01 AT5G53370 35.714 574 335 10 5 571 41 587 7.77e-115 353
MsG0180004756.01.T01 AT5G53370 35.714 574 335 10 5 571 77 623 1.80e-114 354
MsG0180004756.01.T01 AT1G11580 37.148 568 314 11 5 565 22 553 3.81e-114 351
MsG0180004756.01.T01 AT1G11580 37.148 568 314 11 5 565 43 574 1.52e-113 350
MsG0180004756.01.T01 AT3G43270 39.165 503 284 7 69 569 43 525 3.59e-113 347
MsG0180004756.01.T01 AT4G02300 39.655 464 258 6 106 569 91 532 2.15e-111 343
MsG0180004756.01.T01 AT2G45220 37.873 536 280 14 37 569 26 511 2.86e-110 339
MsG0180004756.01.T01 AT1G23200 35.911 582 322 14 1 564 1 549 1.18e-108 337
MsG0180004756.01.T01 AT3G14300 37.524 525 296 13 41 558 459 958 2.28e-107 344
MsG0180004756.01.T01 AT4G33220 44.382 356 190 2 214 569 55 402 2.82e-107 328
MsG0180004756.01.T01 AT3G49220 35.938 576 328 13 6 569 50 596 5.71e-107 333
MsG0180004756.01.T01 AT2G26440 35.649 547 314 11 32 568 28 546 6.32e-107 332
MsG0180004756.01.T01 AT3G49220 35.938 576 328 13 6 569 95 641 1.58e-106 334
MsG0180004756.01.T01 AT1G02810 34.739 593 324 14 20 569 5 577 8.22e-105 327
MsG0180004756.01.T01 AT4G02320 36.285 463 269 5 108 567 77 516 3.83e-104 323
MsG0180004756.01.T01 AT3G59010 35.962 520 285 9 56 569 51 528 1.32e-103 323
MsG0180004756.01.T01 AT2G43050 37.550 498 263 10 75 569 64 516 5.05e-102 318
MsG0180004756.01.T01 AT3G10720 36.248 549 310 14 45 569 83 615 3.38e-99 314
MsG0180004756.01.T01 AT4G02330 33.979 568 305 14 43 569 33 571 2.17e-97 308
MsG0180004756.01.T01 AT5G20860 31.634 569 346 13 10 569 4 538 4.75e-96 303
MsG0180004756.01.T01 AT5G51490 37.380 519 279 12 59 569 56 536 6.32e-96 303
MsG0180004756.01.T01 AT5G51500 45.930 344 174 5 226 565 201 536 3.14e-95 301
MsG0180004756.01.T01 AT4G00190 34.644 534 275 15 44 569 7 474 7.85e-95 298
MsG0180004756.01.T01 AT2G47550 34.137 539 324 10 44 569 38 558 8.52e-95 301
MsG0180004756.01.T01 AT3G60730 44.969 318 166 2 254 568 207 518 1.47e-93 296
MsG0180004756.01.T01 AT5G04970 33.274 565 305 12 45 569 88 620 1.63e-93 299
MsG0180004756.01.T01 AT3G47400 36.752 468 267 9 106 569 152 594 4.11e-93 297
MsG0180004756.01.T01 AT4G15980 43.733 359 190 6 212 565 347 698 8.56e-93 300
MsG0180004756.01.T01 AT4G15980 43.733 359 190 6 212 565 357 708 1.65e-92 299
MsG0180004756.01.T01 AT4G03930 34.709 533 308 13 46 569 23 524 6.22e-92 292
MsG0180004756.01.T01 AT3G27980 38.061 423 228 8 148 569 108 497 2.94e-90 287
MsG0180004756.01.T01 AT1G11590 37.617 428 235 7 144 569 127 524 5.11e-89 285
MsG0180004756.01.T01 AT3G10720 48.496 266 130 2 304 569 1 259 5.06e-81 255
MsG0180004756.01.T01 AT5G20860 29.575 541 316 12 10 541 4 488 1.33e-79 259
MsG0180004756.01.T01 AT1G11370 45.902 244 132 0 252 495 45 288 4.50e-74 238
MsG0180004756.01.T01 AT5G64640 32.543 464 273 13 112 561 164 601 1.17e-71 241
MsG0180004756.01.T01 AT5G09760 33.477 463 267 15 108 557 112 546 2.87e-69 233
MsG0180004756.01.T01 AT5G09760 33.477 463 267 15 108 557 138 572 4.09e-69 234
MsG0180004756.01.T01 AT1G05310 33.544 316 182 6 254 559 92 389 5.82e-46 167
MsG0180004756.01.T01 AT2G36710 31.731 312 188 5 259 563 97 390 8.42e-43 158
MsG0180004756.01.T01 AT5G19730 33.856 319 175 8 254 559 87 382 2.14e-42 157
MsG0180004756.01.T01 AT3G29090 31.126 302 184 4 255 546 9 296 1.09e-41 153
MsG0180004756.01.T01 AT5G18990 33.681 288 165 5 250 525 26 299 1.45e-41 153
MsG0180004756.01.T01 AT2G21610 30.293 307 186 7 255 559 53 333 2.18e-41 153
MsG0180004756.01.T01 AT2G21610 30.293 307 186 7 255 559 58 338 2.87e-41 153
MsG0180004756.01.T01 AT3G24130 34.507 284 158 6 255 525 36 304 6.45e-41 151
MsG0180004756.01.T01 AT2G36700 30.547 311 188 6 255 558 44 333 4.01e-40 149
MsG0180004756.01.T01 AT3G17060 29.568 301 187 6 254 546 47 330 2.45e-38 144
MsG0180004756.01.T01 AT5G07430 30.816 331 201 6 230 547 35 350 6.76e-38 144
MsG0180004756.01.T01 AT2G19150 32.423 293 172 6 263 546 51 326 8.83e-37 140
MsG0180004756.01.T01 AT5G47500 27.882 373 223 9 185 535 1 349 1.69e-34 134
MsG0180004756.01.T01 AT5G61680 30.693 303 182 7 255 548 71 354 1.51e-33 131
MsG0180004756.01.T01 AT5G07420 28.869 336 209 7 226 547 31 350 3.41e-33 130
MsG0180004756.01.T01 AT1G44980 34.434 212 136 2 208 417 32 242 2.50e-32 125
MsG0180004756.01.T01 AT2G19150 33.745 243 138 5 263 496 51 279 5.90e-32 125
MsG0180004756.01.T01 AT5G26810 29.276 304 183 5 239 525 20 308 8.09e-32 126
MsG0180004756.01.T01 AT5G55590 29.560 318 191 7 254 559 83 379 9.80e-31 124
MsG0180004756.01.T01 AT1G69940 27.679 336 213 8 228 548 31 351 1.56e-30 123
MsG0180004756.01.T01 AT2G47280 31.104 299 179 7 258 546 40 321 2.18e-30 122
MsG0180004756.01.T01 AT5G07410 28.115 313 198 7 228 525 31 331 1.04e-29 120
MsG0180004756.01.T01 AT5G55590 30.980 255 152 5 254 496 83 325 2.31e-29 119
MsG0180004756.01.T01 AT3G49220 28.824 340 207 12 6 333 95 411 2.26e-27 115
MsG0180004756.01.T01 AT3G62820 31.496 127 79 3 41 164 34 155 3.75e-11 63.2

Find 165 sgRNAs with CRISPR-Local

Find 197 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAACCAATTCAAATCGTATT+TGG 0.093679 1:-82279606 MsG0180004756.01.T01:CDS
TTCCAGCAGGTCCAGCTTTA+AGG 0.133191 1:+82279351 None:intergenic
AAGAATATTTATTGATGTTT+TGG 0.159793 1:+82280530 None:intergenic
CTGGGACGATTTCGCAATTC+TGG 0.190706 1:+82279651 None:intergenic
CCACTCAAGAATACCAAATA+AGG 0.216382 1:-82281505 MsG0180004756.01.T01:five_prime_UTR
ACTGGTATTCCTTATGCTAT+TGG 0.231006 1:-82279305 MsG0180004756.01.T01:CDS
ATTTGCTAAGACAGTGTTTA+TGG 0.248975 1:-82279567 MsG0180004756.01.T01:CDS
TCTCGAATCATCGGCTAATT+TGG 0.259142 1:-82281054 MsG0180004756.01.T01:CDS
GGACCTGGTGCTAATCTTAA+TGG 0.269133 1:-82279446 MsG0180004756.01.T01:CDS
GATTTGAATTGGTTCCTAAC+TGG 0.290512 1:+82279614 None:intergenic
GCCCATGGAGTCCACCCTTC+TGG 0.291149 1:+82279518 None:intergenic
CAACGCAAGGATAACACTTT+TGG 0.300874 1:+82281178 None:intergenic
TCCAGCTTCTCGTCGTCTTA+TGG 0.301133 1:-82280781 MsG0180004756.01.T01:CDS
ACATGGTTTGCACATTCTTT+TGG 0.310453 1:+82281309 None:intergenic
ACAATTGCAAACAGAAAGTT+TGG 0.317051 1:-82280895 MsG0180004756.01.T01:CDS
TTGAGACCAGCTTCAAAGTA+TGG 0.319897 1:+82279132 None:intergenic
TGCCAGTTAGTTTCTCCATT+TGG 0.326098 1:+82280871 None:intergenic
AAGAAATTAATTTGAGGGTT+GGG 0.352763 1:-82279249 MsG0180004756.01.T01:three_prime_UTR
TGTTGTCGTTGTTAACAAAA+AGG 0.359925 1:-82281354 MsG0180004756.01.T01:CDS
AACCAATTCAAATCGTATTT+GGG 0.362117 1:-82279605 MsG0180004756.01.T01:CDS
TGCCCAAATACGATTTGAAT+TGG 0.365143 1:+82279603 None:intergenic
AGAGGGATTTGTTCCCAGTT+AGG 0.375648 1:-82279628 MsG0180004756.01.T01:CDS
AATTCCTAAAATCAGGTGTT+TGG 0.378370 1:+82281000 None:intergenic
ATTAGAAGAAATTAATTTGA+GGG 0.381800 1:-82279254 MsG0180004756.01.T01:three_prime_UTR
GGACAAGCCTGGTGTCAAAA+TGG 0.381918 1:-82281120 MsG0180004756.01.T01:CDS
CTGAAGGATGTTAGACATAC+TGG 0.386275 1:+82280830 None:intergenic
GTGTTTATGGAATCTAATAT+TGG 0.388048 1:-82279554 MsG0180004756.01.T01:CDS
TCTTTAGCAACTACTGCATT+TGG 0.396655 1:+82280669 None:intergenic
ACAATGCAAACTGCCACTTT+TGG 0.399904 1:-82280441 MsG0180004756.01.T01:intron
TTCCTTAAAGCTGGACCTGC+TGG 0.409858 1:-82279353 MsG0180004756.01.T01:CDS
TACATTATCTATGTTAAGGC+TGG 0.412097 1:-82280579 MsG0180004756.01.T01:CDS
TATTCAGCAAATGTTGCAAA+TGG 0.412387 1:-82279992 MsG0180004756.01.T01:intron
AACAGAAAGTTTGGACCAAA+TGG 0.416679 1:-82280886 MsG0180004756.01.T01:CDS
TCAATAAATATTCTTATGTA+TGG 0.423502 1:-82280522 MsG0180004756.01.T01:CDS
GAAGAAATTAATTTGAGGGT+TGG 0.426084 1:-82279250 MsG0180004756.01.T01:three_prime_UTR
GCTTCATTCTTAGAAATTTG+AGG 0.427536 1:+82279398 None:intergenic
CTCAACCAATTCCTAAAATC+AGG 0.428870 1:+82280993 None:intergenic
GACCAAATGGAGAAACTAAC+TGG 0.428961 1:-82280873 MsG0180004756.01.T01:CDS
AAGGGTGGACTCCATGGGCT+GGG 0.432875 1:-82279514 MsG0180004756.01.T01:CDS
GAAGGGTGGACTCCATGGGC+TGG 0.434479 1:-82279515 MsG0180004756.01.T01:CDS
TGCATGGACGGATTTGAAAA+CGG 0.436966 1:-82280945 MsG0180004756.01.T01:CDS
CAGATACATTATCTATGTTA+AGG 0.437301 1:-82280583 MsG0180004756.01.T01:CDS
ACTGGGAACAAATCCCTCTC+TGG 0.439965 1:+82279632 None:intergenic
ATCAGGTGTTTGGTCATGAA+TGG 0.440600 1:+82281010 None:intergenic
TATGCTGAATATGCCAATAC+TGG 0.443490 1:-82279467 MsG0180004756.01.T01:CDS
TCCATAAGACGACGAGAAGC+TGG 0.447878 1:+82280780 None:intergenic
GGTACCATAGACTTCATATT+CGG 0.448277 1:-82279794 MsG0180004756.01.T01:CDS
GCATGGACGGATTTGAAAAC+GGG 0.449094 1:-82280944 MsG0180004756.01.T01:CDS
ATTTGAATTGGTTCCTAACT+GGG 0.455359 1:+82279615 None:intergenic
AGAATCATTGTGCGAAAGCC+AGG 0.457399 1:-82279743 MsG0180004756.01.T01:CDS
ATCCGTCCATGCATGATTGT+TGG 0.460778 1:+82280955 None:intergenic
GAATATGAGTGATAAGTTAA+CGG 0.462661 1:-82281156 MsG0180004756.01.T01:CDS
CACCAGAAGGGTGGACTCCA+TGG 0.463579 1:-82279520 MsG0180004756.01.T01:CDS
GAAGCTGCTCAATTCACTGC+AGG 0.467147 1:-82279380 MsG0180004756.01.T01:CDS
TTGATTCCATACTTTGAAGC+TGG 0.469330 1:-82279138 MsG0180004756.01.T01:three_prime_UTR
AAACTTTGTCATGACACTCT+TGG 0.474399 1:-82281266 MsG0180004756.01.T01:CDS
GGTTTCTAAATGCCACTGCT+TGG 0.481104 1:+82279918 None:intergenic
TTATAAATACTTACCAAAAG+TGG 0.482202 1:+82280428 None:intergenic
CTGCTGGAAGAGCTGATGAT+TGG 0.487511 1:-82279337 MsG0180004756.01.T01:CDS
AGGATTGCCCAAGTGGTTCT+CGG 0.489335 1:-82280736 MsG0180004756.01.T01:CDS
TTTCCACCCGTGCTGTCGCA+CGG 0.490249 1:-82278984 MsG0180004756.01.T01:three_prime_UTR
ATCTTCAGTTGCTTGACACA+TGG 0.491960 1:+82281292 None:intergenic
CCGGTGATAATGGTCTTTGT+AGG 0.493883 1:+82280492 None:intergenic
AACTTACAACCTACATGTAA+AGG 0.496129 1:+82279086 None:intergenic
AGCTATTGACTCCTATCCTA+AGG 0.499647 1:-82280616 MsG0180004756.01.T01:CDS
CTTATTTGGTATTCTTGAGT+GGG 0.501384 1:+82281506 None:intergenic
CTTGGACATATAATGTGTCT+TGG 0.501537 1:+82279852 None:intergenic
GTTTGATTTATTACGTACAT+AGG 0.503892 1:-82279182 MsG0180004756.01.T01:three_prime_UTR
TACCGCAACTGCGAAATCTC+TGG 0.505585 1:-82279815 MsG0180004756.01.T01:CDS
TGGTATTCTTGAGTGGGAGA+AGG 0.510494 1:+82281512 None:intergenic
ATCTTAATGGAAGGGTTAAG+TGG 0.513588 1:-82279433 MsG0180004756.01.T01:CDS
ACATTATCTATGTTAAGGCT+GGG 0.514185 1:-82280578 MsG0180004756.01.T01:CDS
AATTAGAAGAAATTAATTTG+AGG 0.515822 1:-82279255 MsG0180004756.01.T01:three_prime_UTR
TGAGCCGAATATGAAGTCTA+TGG 0.520391 1:+82279790 None:intergenic
TTAGCAACTACTGCATTTGG+TGG 0.520848 1:+82280672 None:intergenic
GCAGGGTCATTCCTTAAAGC+TGG 0.520864 1:-82279362 MsG0180004756.01.T01:CDS
GCGGCTGCTAAATAAGCAGA+TGG 0.522101 1:+82281215 None:intergenic
CACTCAAGAATACCAAATAA+GGG 0.524399 1:-82281504 MsG0180004756.01.T01:five_prime_UTR
TTCAACACCGTAACCGCAGA+CGG 0.526025 1:-82279710 MsG0180004756.01.T01:CDS
TTAAGTCTTTGCAATCATCA+AGG 0.527133 1:+82281096 None:intergenic
TATCTGCCTTTGAATCCCTT+AGG 0.530338 1:+82280600 None:intergenic
GTGTTGAATTGACTAGGTCC+TGG 0.530463 1:+82279725 None:intergenic
ATCTGCAGCCGAGAACCACT+TGG 0.531637 1:+82280728 None:intergenic
CAATCATCAGCTCTTCCAGC+AGG 0.532461 1:+82279338 None:intergenic
GCAACTACTGCATTTGGTGG+AGG 0.532957 1:+82280675 None:intergenic
CAATTTCAAGCTAGCTCAGG+TGG 0.533340 1:-82279112 MsG0180004756.01.T01:three_prime_UTR
AAGAGCTGATGATTGGTTGA+AGG 0.536315 1:-82279330 MsG0180004756.01.T01:CDS
GATGATTGGTTGAAGGCTAC+TGG 0.538753 1:-82279323 MsG0180004756.01.T01:CDS
TCCTATCCTAAGGGATTCAA+AGG 0.540355 1:-82280606 MsG0180004756.01.T01:CDS
AGGTGGAATCCTTTACATGT+AGG 0.540375 1:-82279095 MsG0180004756.01.T01:three_prime_UTR
CGGAACAAAACAACGAAACA+TGG 0.540386 1:-82279690 MsG0180004756.01.T01:CDS
GCTAATGAGATTGATGATGA+AGG 0.540951 1:-82280756 MsG0180004756.01.T01:CDS
GAACATGGCAAGGACAAGCC+TGG 0.542053 1:-82281131 MsG0180004756.01.T01:CDS
GGTAGAATTGACGATTAGCT+TGG 0.542707 1:+82279834 None:intergenic
ATTAGCACCAGGTCCAGTAT+TGG 0.545347 1:+82279454 None:intergenic
TTCCACCCGTGCTGTCGCAC+GGG 0.545583 1:-82278983 MsG0180004756.01.T01:three_prime_UTR
AATGGAAGGGTTAAGTGGAA+AGG 0.545668 1:-82279428 MsG0180004756.01.T01:CDS
GACCCGTGCGACAGCACGGG+TGG 0.547538 1:+82278981 None:intergenic
CTTGTGGTGGGTGTTGCCAT+CGG 0.551099 1:-82281380 MsG0180004756.01.T01:CDS
AACACCCACCACAAGAATGA+TGG 0.551325 1:+82281388 None:intergenic
TCTCAATTTCAAGCTAGCTC+AGG 0.552022 1:-82279115 MsG0180004756.01.T01:three_prime_UTR
TTCTTCGATTGCGCCATGCA+CGG 0.552464 1:-82279878 MsG0180004756.01.T01:CDS
GATGGGTCAGAGGAATTAGC+GGG 0.554406 1:+82281233 None:intergenic
GTCTTAGCAAATGCCTTCCA+TGG 0.556168 1:+82279578 None:intergenic
GCCTTTGAATCCCTTAGGAT+AGG 0.556491 1:+82280605 None:intergenic
AGAAAGCAGACATGTCTCCT+TGG 0.557066 1:+82279897 None:intergenic
AATGACCCGTGCGACAGCAC+GGG 0.558142 1:+82278978 None:intergenic
CCTTATTTGGTATTCTTGAG+TGG 0.558495 1:+82281505 None:intergenic
AATGCAGTAGTTGCTAAAGA+TGG 0.558878 1:-82280666 MsG0180004756.01.T01:CDS
CTGGGAACAAATCCCTCTCT+GGG 0.560496 1:+82279633 None:intergenic
TACCAGAGATTTCGCAGTTG+CGG 0.560765 1:+82279813 None:intergenic
CTGGTGCTAATCTTAATGGA+AGG 0.563667 1:-82279442 MsG0180004756.01.T01:CDS
ATAGCATTTGAGAACACAGC+TGG 0.563819 1:-82279953 MsG0180004756.01.T01:CDS
ACTTGACAGTCTCGAATCAT+CGG 0.570278 1:-82281063 MsG0180004756.01.T01:CDS
GTATCCATCATTCTTGTGGT+GGG 0.571502 1:-82281392 MsG0180004756.01.T01:CDS
ACTTCAAGTCAAAAGTCTGA+AGG 0.572543 1:+82280814 None:intergenic
TGTATCCATCATTCTTGTGG+TGG 0.574202 1:-82281393 MsG0180004756.01.T01:CDS
ATTCTGGATTATTATTCCTG+TGG 0.574635 1:+82279667 None:intergenic
TTTGGCACTAGCTTCAACTG+CGG 0.575538 1:+82281196 None:intergenic
CTATTGCAAAACGCTGGTGG+AGG 0.576530 1:-82280699 MsG0180004756.01.T01:CDS
GGATTTGAAAACGGGACGGA+CGG 0.578745 1:-82280936 MsG0180004756.01.T01:CDS
CTCATACCAACAATCATGCA+TGG 0.580314 1:-82280961 MsG0180004756.01.T01:CDS
ACCAGAAGGGTGGACTCCAT+GGG 0.582145 1:-82279519 MsG0180004756.01.T01:CDS
AGAAATTGAGTCCCAGCCCA+TGG 0.584960 1:+82279503 None:intergenic
TGGTGTATCCATCATTCTTG+TGG 0.586479 1:-82281396 MsG0180004756.01.T01:CDS
AATCGTATTTGGGCAGACCA+TGG 0.586718 1:-82279595 MsG0180004756.01.T01:CDS
TAGAATAAAAGATCTCAAGA+AGG 0.586752 1:-82281456 MsG0180004756.01.T01:five_prime_UTR
CATTATCTATGTTAAGGCTG+GGG 0.589641 1:-82280577 MsG0180004756.01.T01:CDS
TAAGTCTTTGCAATCATCAA+GGG 0.591901 1:+82281097 None:intergenic
GTAGTTGCTAAAGATGGTAG+TGG 0.594613 1:-82280660 MsG0180004756.01.T01:CDS
TTGCGAAATCGTCCCAGAGA+GGG 0.599873 1:-82279645 MsG0180004756.01.T01:CDS
AAATGACCCGTGCGACAGCA+CGG 0.600683 1:+82278977 None:intergenic
TACCAACAATCATGCATGGA+CGG 0.601695 1:-82280957 MsG0180004756.01.T01:CDS
TGTGTCTTGGTAACCGTGCA+TGG 0.605272 1:+82279865 None:intergenic
AAGCTATTGCAAAACGCTGG+TGG 0.605540 1:-82280702 MsG0180004756.01.T01:CDS
AATATTCTTATGTATGGCGA+CGG 0.606190 1:-82280516 MsG0180004756.01.T01:CDS
GTTACGGTGTTGAATTGACT+AGG 0.607459 1:+82279719 None:intergenic
AGCTTCTCGTCGTCTTATGG+AGG 0.608650 1:-82280778 MsG0180004756.01.T01:CDS
GAATATGCCAATACTGGACC+TGG 0.608924 1:-82279461 MsG0180004756.01.T01:CDS
AAACAACGAAACATGGCCAC+AGG 0.609663 1:-82279683 MsG0180004756.01.T01:CDS
AAGCTGCTCAATTCACTGCA+GGG 0.610033 1:-82279379 MsG0180004756.01.T01:CDS
GTATTTGGGCAGACCATGGA+AGG 0.610474 1:-82279591 MsG0180004756.01.T01:CDS
GCTATTGACTCCTATCCTAA+GGG 0.611723 1:-82280615 MsG0180004756.01.T01:CDS
TGGTGCTAATCTTAATGGAA+GGG 0.612125 1:-82279441 MsG0180004756.01.T01:CDS
TGAAAACGGGACGGACGGTG+AGG 0.620429 1:-82280931 MsG0180004756.01.T01:CDS
TATCACTCATATTCAACGCA+AGG 0.621413 1:+82281165 None:intergenic
AGATGGGTCAGAGGAATTAG+CGG 0.622455 1:+82281232 None:intergenic
GGTGATGTCATTGCACCAGA+AGG 0.623478 1:-82279533 MsG0180004756.01.T01:CDS
AACAACGACAACAACACCGA+TGG 0.624875 1:+82281364 None:intergenic
TAAATAAGCAGATGGGTCAG+AGG 0.628411 1:+82281223 None:intergenic
TCTGCAGCCGAGAACCACTT+GGG 0.632329 1:+82280729 None:intergenic
CTTCCATTAAGATTAGCACC+AGG 0.635306 1:+82279443 None:intergenic
GATAAGTTAACGGTTGAACA+TGG 0.635902 1:-82281146 MsG0180004756.01.T01:CDS
CGTAAGCTATTGCAAAACGC+TGG 0.636627 1:-82280705 MsG0180004756.01.T01:CDS
ATGTCATTGCACCAGAAGGG+TGG 0.639350 1:-82279529 MsG0180004756.01.T01:CDS
CGGCTGCTAAATAAGCAGAT+GGG 0.646236 1:+82281216 None:intergenic
GCAGTGGCATTTAGAAACCA+AGG 0.656250 1:-82279914 MsG0180004756.01.T01:CDS
ACCACAAAAGCACCAAGCAG+TGG 0.664958 1:-82279930 MsG0180004756.01.T01:CDS
TGGCTTGAATGTTGTTATCG+CGG 0.668475 1:+82281030 None:intergenic
ATGATGAAGGATTGCCCAAG+TGG 0.675254 1:-82280743 MsG0180004756.01.T01:CDS
CCTACAAAGACCATTATCAC+CGG 0.676991 1:-82280492 MsG0180004756.01.T01:CDS
GGACGGATTTGAAAACGGGA+CGG 0.677221 1:-82280940 MsG0180004756.01.T01:CDS
GTGATGTCATTGCACCAGAA+GGG 0.681750 1:-82279532 MsG0180004756.01.T01:CDS
GTTAACGGTTGAACATGGCA+AGG 0.693489 1:-82281141 MsG0180004756.01.T01:CDS
ATTGCGAAATCGTCCCAGAG+AGG 0.707136 1:-82279646 MsG0180004756.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATACATACATATATAA+AGG + Chr1:82280388-82280407 None:intergenic 10.0%
!! TCAATAAATATTCTTATGTA+TGG - Chr1:82279939-82279958 MsG0180004756.01.T01:CDS 15.0%
!!! AAGAATATTTATTGATGTTT+TGG + Chr1:82279934-82279953 None:intergenic 15.0%
!!! AATTAGAAGAAATTAATTTG+AGG - Chr1:82281206-82281225 MsG0180004756.01.T01:CDS 15.0%
!!! AGAATATTTATTGATGTTTT+GGG + Chr1:82279933-82279952 None:intergenic 15.0%
!!! ATTAGAAGAAATTAATTTGA+GGG - Chr1:82281207-82281226 MsG0180004756.01.T01:CDS 15.0%
!! GAAAAACAAAAAGATATGAA+CGG - Chr1:82279027-82279046 MsG0180004756.01.T01:three_prime_UTR 20.0%
!! TTATAAATACTTACCAAAAG+TGG + Chr1:82280036-82280055 None:intergenic 20.0%
!!! TCTTCTTTTTTGTCATATTA+TGG + Chr1:82280177-82280196 None:intergenic 20.0%
!!! TTTTATTTCATACCCTTATT+TGG + Chr1:82278972-82278991 None:intergenic 20.0%
! AACCAATTCAAATCGTATTT+GGG - Chr1:82280856-82280875 MsG0180004756.01.T01:CDS 25.0%
! CAGATACATTATCTATGTTA+AGG - Chr1:82279878-82279897 MsG0180004756.01.T01:CDS 25.0%
! GAATATGAGTGATAAGTTAA+CGG - Chr1:82279305-82279324 MsG0180004756.01.T01:CDS 25.0%
! GTGTTTATGGAATCTAATAT+TGG - Chr1:82280907-82280926 MsG0180004756.01.T01:CDS 25.0%
! TAGAATAAAAGATCTCAAGA+AGG - Chr1:82279005-82279024 MsG0180004756.01.T01:three_prime_UTR 25.0%
! TCAATTAAGATTATGTGACT+TGG - Chr1:82280350-82280369 MsG0180004756.01.T01:intron 25.0%
! TCATTTAACCTCTCAAATAT+AGG - Chr1:82280101-82280120 MsG0180004756.01.T01:intron 25.0%
!! AAGAAATTAATTTGAGGGTT+GGG - Chr1:82281212-82281231 MsG0180004756.01.T01:CDS 25.0%
!! GTTTGATTTATTACGTACAT+AGG - Chr1:82281279-82281298 MsG0180004756.01.T01:CDS 25.0%
!! TTTTCAAATCCAATAGCATA+AGG + Chr1:82281168-82281187 None:intergenic 25.0%
!!! ATTTATTGATGTTTTGGGAA+TGG + Chr1:82279928-82279947 None:intergenic 25.0%
!!! GATTCTAGAGTTTTGAATTA+GGG + Chr1:82280704-82280723 None:intergenic 25.0%
!!! TGATTCTAGAGTTTTGAATT+AGG + Chr1:82280705-82280724 None:intergenic 25.0%
AACTTACAACCTACATGTAA+AGG + Chr1:82281378-82281397 None:intergenic 30.0%
AATATTCTTATGTATGGCGA+CGG - Chr1:82279945-82279964 MsG0180004756.01.T01:CDS 30.0%
AATTCCTAAAATCAGGTGTT+TGG + Chr1:82279464-82279483 None:intergenic 30.0%
ACAATTGCAAACAGAAAGTT+TGG - Chr1:82279566-82279585 MsG0180004756.01.T01:CDS 30.0%
ACATTATCTATGTTAAGGCT+GGG - Chr1:82279883-82279902 MsG0180004756.01.T01:CDS 30.0%
ATTCTGGATTATTATTCCTG+TGG + Chr1:82280797-82280816 None:intergenic 30.0%
CACTCAAGAATACCAAATAA+GGG - Chr1:82278957-82278976 MsG0180004756.01.T01:three_prime_UTR 30.0%
CTTATTTGGTATTCTTGAGT+GGG + Chr1:82278958-82278977 None:intergenic 30.0%
GAACCAATTCAAATCGTATT+TGG - Chr1:82280855-82280874 MsG0180004756.01.T01:CDS 30.0%
GCTTCATTCTTAGAAATTTG+AGG + Chr1:82281066-82281085 None:intergenic 30.0%
TAAGTCTTTGCAATCATCAA+GGG + Chr1:82279367-82279386 None:intergenic 30.0%
TACATTATCTATGTTAAGGC+TGG - Chr1:82279882-82279901 MsG0180004756.01.T01:CDS 30.0%
TATTCAGCAAATGTTGCAAA+TGG - Chr1:82280469-82280488 MsG0180004756.01.T01:CDS 30.0%
TGTTGTCGTTGTTAACAAAA+AGG - Chr1:82279107-82279126 MsG0180004756.01.T01:three_prime_UTR 30.0%
TTAAGTCTTTGCAATCATCA+AGG + Chr1:82279368-82279387 None:intergenic 30.0%
TTTGTCTTCCTATATTTGAG+AGG + Chr1:82280112-82280131 None:intergenic 30.0%
! AACGGAAAAATATTAGTCTC+TGG - Chr1:82279045-82279064 MsG0180004756.01.T01:three_prime_UTR 30.0%
! ATTTGAATTGGTTCCTAACT+GGG + Chr1:82280849-82280868 None:intergenic 30.0%
! ATTTGCTAAGACAGTGTTTA+TGG - Chr1:82280894-82280913 MsG0180004756.01.T01:CDS 30.0%
! GAAGAAATTAATTTGAGGGT+TGG - Chr1:82281211-82281230 MsG0180004756.01.T01:CDS 30.0%
!! AAACACCTGATTTTAGGAAT+TGG - Chr1:82279463-82279482 MsG0180004756.01.T01:CDS 30.0%
AAACTTTGTCATGACACTCT+TGG - Chr1:82279195-82279214 MsG0180004756.01.T01:three_prime_UTR 35.0%
AACAGAAAGTTTGGACCAAA+TGG - Chr1:82279575-82279594 MsG0180004756.01.T01:CDS 35.0%
AATGCAGTAGTTGCTAAAGA+TGG - Chr1:82279795-82279814 MsG0180004756.01.T01:CDS 35.0%
ACTGGTATTCCTTATGCTAT+TGG - Chr1:82281156-82281175 MsG0180004756.01.T01:CDS 35.0%
ACTTCAAGTCAAAAGTCTGA+AGG + Chr1:82279650-82279669 None:intergenic 35.0%
ATCTTAATGGAAGGGTTAAG+TGG - Chr1:82281028-82281047 MsG0180004756.01.T01:CDS 35.0%
CATTATCTATGTTAAGGCTG+GGG - Chr1:82279884-82279903 MsG0180004756.01.T01:CDS 35.0%
CCACTCAAGAATACCAAATA+AGG - Chr1:82278956-82278975 MsG0180004756.01.T01:three_prime_UTR 35.0%
CTCAACCAATTCCTAAAATC+AGG + Chr1:82279471-82279490 None:intergenic 35.0%
CTTGGACATATAATGTGTCT+TGG + Chr1:82280612-82280631 None:intergenic 35.0%
GATAAGTTAACGGTTGAACA+TGG - Chr1:82279315-82279334 MsG0180004756.01.T01:CDS 35.0%
GGTACCATAGACTTCATATT+CGG - Chr1:82280667-82280686 MsG0180004756.01.T01:CDS 35.0%
TATCACTCATATTCAACGCA+AGG + Chr1:82279299-82279318 None:intergenic 35.0%
TATGCTGAATATGCCAATAC+TGG - Chr1:82280994-82281013 MsG0180004756.01.T01:CDS 35.0%
TCTTTAGCAACTACTGCATT+TGG + Chr1:82279795-82279814 None:intergenic 35.0%
TGCCCAAATACGATTTGAAT+TGG + Chr1:82280861-82280880 None:intergenic 35.0%
! ATGACCAAACACCTGATTTT+AGG - Chr1:82279457-82279476 MsG0180004756.01.T01:CDS 35.0%
! CCTTATTTGGTATTCTTGAG+TGG + Chr1:82278959-82278978 None:intergenic 35.0%
! GATTTGAATTGGTTCCTAAC+TGG + Chr1:82280850-82280869 None:intergenic 35.0%
! TGGTGCTAATCTTAATGGAA+GGG - Chr1:82281020-82281039 MsG0180004756.01.T01:CDS 35.0%
!! ACATGGTTTGCACATTCTTT+TGG + Chr1:82279155-82279174 None:intergenic 35.0%
!! GCTAATGAGATTGATGATGA+AGG - Chr1:82279705-82279724 MsG0180004756.01.T01:CDS 35.0%
!! TTGATTCCATACTTTGAAGC+TGG - Chr1:82281323-82281342 MsG0180004756.01.T01:CDS 35.0%
!!! CTAGAGTTTTGAATTAGGGT+TGG + Chr1:82280700-82280719 None:intergenic 35.0%
!!! TCAGACTTTTGACTTGAAGT+TGG - Chr1:82279650-82279669 MsG0180004756.01.T01:CDS 35.0%
AATGGAAGGGTTAAGTGGAA+AGG - Chr1:82281033-82281052 MsG0180004756.01.T01:CDS 40.0%
ACTTGACAGTCTCGAATCAT+CGG - Chr1:82279398-82279417 MsG0180004756.01.T01:CDS 40.0%
AGGTGGAATCCTTTACATGT+AGG - Chr1:82281366-82281385 MsG0180004756.01.T01:CDS 40.0%
ATAGCATTTGAGAACACAGC+TGG - Chr1:82280508-82280527 MsG0180004756.01.T01:CDS 40.0%
ATCAGGTGTTTGGTCATGAA+TGG + Chr1:82279454-82279473 None:intergenic 40.0%
ATCTTCAGTTGCTTGACACA+TGG + Chr1:82279172-82279191 None:intergenic 40.0%
CCTACAAAGACCATTATCAC+CGG - Chr1:82279969-82279988 MsG0180004756.01.T01:CDS 40.0%
CGGAACAAAACAACGAAACA+TGG - Chr1:82280771-82280790 MsG0180004756.01.T01:CDS 40.0%
CTCATACCAACAATCATGCA+TGG - Chr1:82279500-82279519 MsG0180004756.01.T01:CDS 40.0%
CTGAAGGATGTTAGACATAC+TGG + Chr1:82279634-82279653 None:intergenic 40.0%
CTTCCATTAAGATTAGCACC+AGG + Chr1:82281021-82281040 None:intergenic 40.0%
GACCAAATGGAGAAACTAAC+TGG - Chr1:82279588-82279607 MsG0180004756.01.T01:CDS 40.0%
GTAGTTGCTAAAGATGGTAG+TGG - Chr1:82279801-82279820 MsG0180004756.01.T01:CDS 40.0%
GTATCCATCATTCTTGTGGT+GGG - Chr1:82279069-82279088 MsG0180004756.01.T01:three_prime_UTR 40.0%
TAAATAAGCAGATGGGTCAG+AGG + Chr1:82279241-82279260 None:intergenic 40.0%
TACCAACAATCATGCATGGA+CGG - Chr1:82279504-82279523 MsG0180004756.01.T01:CDS 40.0%
TATCTGCCTTTGAATCCCTT+AGG + Chr1:82279864-82279883 None:intergenic 40.0%
TCCTATCCTAAGGGATTCAA+AGG - Chr1:82279855-82279874 MsG0180004756.01.T01:CDS 40.0%
TCTCAATTTCAAGCTAGCTC+AGG - Chr1:82281346-82281365 MsG0180004756.01.T01:CDS 40.0%
TGAGCCGAATATGAAGTCTA+TGG + Chr1:82280674-82280693 None:intergenic 40.0%
TGGCTTGAATGTTGTTATCG+CGG + Chr1:82279434-82279453 None:intergenic 40.0%
TGGTGTATCCATCATTCTTG+TGG - Chr1:82279065-82279084 MsG0180004756.01.T01:three_prime_UTR 40.0%
TGTATCCATCATTCTTGTGG+TGG - Chr1:82279068-82279087 MsG0180004756.01.T01:three_prime_UTR 40.0%
TTAGCAACTACTGCATTTGG+TGG + Chr1:82279792-82279811 None:intergenic 40.0%
TTGAGACCAGCTTCAAAGTA+TGG + Chr1:82281332-82281351 None:intergenic 40.0%
! AAGAGCTGATGATTGGTTGA+AGG - Chr1:82281131-82281150 MsG0180004756.01.T01:CDS 40.0%
! CAACGCAAGGATAACACTTT+TGG + Chr1:82279286-82279305 None:intergenic 40.0%
! CTGGTGCTAATCTTAATGGA+AGG - Chr1:82281019-82281038 MsG0180004756.01.T01:CDS 40.0%
! GGTAGAATTGACGATTAGCT+TGG + Chr1:82280630-82280649 None:intergenic 40.0%
! GTTACGGTGTTGAATTGACT+AGG + Chr1:82280745-82280764 None:intergenic 40.0%
! GTTTTTGTGACCGGTGATAA+TGG + Chr1:82279982-82280001 None:intergenic 40.0%
! TCTCGAATCATCGGCTAATT+TGG - Chr1:82279407-82279426 MsG0180004756.01.T01:CDS 40.0%
! TGCATGGACGGATTTGAAAA+CGG - Chr1:82279516-82279535 MsG0180004756.01.T01:CDS 40.0%
! TGCCAGTTAGTTTCTCCATT+TGG + Chr1:82279593-82279612 None:intergenic 40.0%
!! AGCTATTGACTCCTATCCTA+AGG - Chr1:82279845-82279864 MsG0180004756.01.T01:CDS 40.0%
!! GCTATTGACTCCTATCCTAA+GGG - Chr1:82279846-82279865 MsG0180004756.01.T01:CDS 40.0%
!! GCTCAATGTAGTTTCTAGCT+TGG + Chr1:82280323-82280342 None:intergenic 40.0%
!!! ACAATGCAAACTGCCACTTT+TGG - Chr1:82280020-82280039 MsG0180004756.01.T01:intron 40.0%
AAACAACGAAACATGGCCAC+AGG - Chr1:82280778-82280797 MsG0180004756.01.T01:CDS 45.0%
AACAACGACAACAACACCGA+TGG + Chr1:82279100-82279119 None:intergenic 45.0%
AACACCCACCACAAGAATGA+TGG + Chr1:82279076-82279095 None:intergenic 45.0%
AAGCTATTGCAAAACGCTGG+TGG - Chr1:82279759-82279778 MsG0180004756.01.T01:CDS 45.0%
AAGCTGCTCAATTCACTGCA+GGG - Chr1:82281082-82281101 MsG0180004756.01.T01:CDS 45.0%
AATCGTATTTGGGCAGACCA+TGG - Chr1:82280866-82280885 MsG0180004756.01.T01:CDS 45.0%
AGAAAGCAGACATGTCTCCT+TGG + Chr1:82280567-82280586 None:intergenic 45.0%
AGAATCATTGTGCGAAAGCC+AGG - Chr1:82280718-82280737 MsG0180004756.01.T01:CDS 45.0%
AGATGGGTCAGAGGAATTAG+CGG + Chr1:82279232-82279251 None:intergenic 45.0%
ATCCGTCCATGCATGATTGT+TGG + Chr1:82279509-82279528 None:intergenic 45.0%
ATGATGAAGGATTGCCCAAG+TGG - Chr1:82279718-82279737 MsG0180004756.01.T01:CDS 45.0%
ATTAGCACCAGGTCCAGTAT+TGG + Chr1:82281010-82281029 None:intergenic 45.0%
CAATTTCAAGCTAGCTCAGG+TGG - Chr1:82281349-82281368 MsG0180004756.01.T01:CDS 45.0%
CGGCTGCTAAATAAGCAGAT+GGG + Chr1:82279248-82279267 None:intergenic 45.0%
CGTAAGCTATTGCAAAACGC+TGG - Chr1:82279756-82279775 MsG0180004756.01.T01:CDS 45.0%
GAATATGCCAATACTGGACC+TGG - Chr1:82281000-82281019 MsG0180004756.01.T01:CDS 45.0%
GCAGTGGCATTTAGAAACCA+AGG - Chr1:82280547-82280566 MsG0180004756.01.T01:CDS 45.0%
GCCTTTGAATCCCTTAGGAT+AGG + Chr1:82279859-82279878 None:intergenic 45.0%
GGTCACAAAAACTTCGTCGA+CGG - Chr1:82279990-82280009 MsG0180004756.01.T01:intron 45.0%
GGTTTCTAAATGCCACTGCT+TGG + Chr1:82280546-82280565 None:intergenic 45.0%
GTCTTAGCAAATGCCTTCCA+TGG + Chr1:82280886-82280905 None:intergenic 45.0%
GTGATGTCATTGCACCAGAA+GGG - Chr1:82280929-82280948 MsG0180004756.01.T01:CDS 45.0%
GTGTTGAATTGACTAGGTCC+TGG + Chr1:82280739-82280758 None:intergenic 45.0%
GTTAACGGTTGAACATGGCA+AGG - Chr1:82279320-82279339 MsG0180004756.01.T01:CDS 45.0%
TACCAGAGATTTCGCAGTTG+CGG + Chr1:82280651-82280670 None:intergenic 45.0%
TGGTATTCTTGAGTGGGAGA+AGG + Chr1:82278952-82278971 None:intergenic 45.0%
! AGAGGGATTTGTTCCCAGTT+AGG - Chr1:82280833-82280852 MsG0180004756.01.T01:CDS 45.0%
! GATGATTGGTTGAAGGCTAC+TGG - Chr1:82281138-82281157 MsG0180004756.01.T01:CDS 45.0%
! GCATGGACGGATTTGAAAAC+GGG - Chr1:82279517-82279536 MsG0180004756.01.T01:CDS 45.0%
! GGACCTGGTGCTAATCTTAA+TGG - Chr1:82281015-82281034 MsG0180004756.01.T01:CDS 45.0%
! GTCGACGAAGTTTTTGTGAC+CGG + Chr1:82279991-82280010 None:intergenic 45.0%
! TCTAGCTTGGATCCTCTGTA+GGG + Chr1:82280310-82280329 None:intergenic 45.0%
! TTTGGCACTAGCTTCAACTG+CGG + Chr1:82279268-82279287 None:intergenic 45.0%
! TTTTGTTCCGTCTGCGGTTA+CGG + Chr1:82280761-82280780 None:intergenic 45.0%
!! CCGGTGATAATGGTCTTTGT+AGG + Chr1:82279972-82279991 None:intergenic 45.0%
!! TCGTTGTTTTGTTCCGTCTG+CGG + Chr1:82280767-82280786 None:intergenic 45.0%
!! TTCTAGCTTGGATCCTCTGT+AGG + Chr1:82280311-82280330 None:intergenic 45.0%
!! TTTTGGTGTGCTGCTAATGC+AGG + Chr1:82279138-82279157 None:intergenic 45.0%
ACTGGGAACAAATCCCTCTC+TGG + Chr1:82280832-82280851 None:intergenic 50.0%
AGAAATTGAGTCCCAGCCCA+TGG + Chr1:82280961-82280980 None:intergenic 50.0%
AGCTTCTCGTCGTCTTATGG+AGG - Chr1:82279683-82279702 MsG0180004756.01.T01:CDS 50.0%
AGGATTGCCCAAGTGGTTCT+CGG - Chr1:82279725-82279744 MsG0180004756.01.T01:CDS 50.0%
ATGTCATTGCACCAGAAGGG+TGG - Chr1:82280932-82280951 MsG0180004756.01.T01:CDS 50.0%
ATTGCGAAATCGTCCCAGAG+AGG - Chr1:82280815-82280834 MsG0180004756.01.T01:CDS 50.0%
CAATCATCAGCTCTTCCAGC+AGG + Chr1:82281126-82281145 None:intergenic 50.0%
CTAGCTTGGATCCTCTGTAG+GGG + Chr1:82280309-82280328 None:intergenic 50.0%
CTATTGCAAAACGCTGGTGG+AGG - Chr1:82279762-82279781 MsG0180004756.01.T01:CDS 50.0%
CTGCTGGAAGAGCTGATGAT+TGG - Chr1:82281124-82281143 MsG0180004756.01.T01:CDS 50.0%
CTGGGAACAAATCCCTCTCT+GGG + Chr1:82280831-82280850 None:intergenic 50.0%
CTGGGACGATTTCGCAATTC+TGG + Chr1:82280813-82280832 None:intergenic 50.0%
GAAGCTGCTCAATTCACTGC+AGG - Chr1:82281081-82281100 MsG0180004756.01.T01:CDS 50.0%
GATGGGTCAGAGGAATTAGC+GGG + Chr1:82279231-82279250 None:intergenic 50.0%
GCAGGGTCATTCCTTAAAGC+TGG - Chr1:82281099-82281118 MsG0180004756.01.T01:CDS 50.0%
GCGGCTGCTAAATAAGCAGA+TGG + Chr1:82279249-82279268 None:intergenic 50.0%
GGATTTGAAAACGGGACGGA+CGG - Chr1:82279525-82279544 MsG0180004756.01.T01:CDS 50.0%
GGTGATGTCATTGCACCAGA+AGG - Chr1:82280928-82280947 MsG0180004756.01.T01:CDS 50.0%
GTATTTGGGCAGACCATGGA+AGG - Chr1:82280870-82280889 MsG0180004756.01.T01:CDS 50.0%
TACCGCAACTGCGAAATCTC+TGG - Chr1:82280646-82280665 MsG0180004756.01.T01:CDS 50.0%
TCCAGCTTCTCGTCGTCTTA+TGG - Chr1:82279680-82279699 MsG0180004756.01.T01:CDS 50.0%
TCCATAAGACGACGAGAAGC+TGG + Chr1:82279684-82279703 None:intergenic 50.0%
TTCAACACCGTAACCGCAGA+CGG - Chr1:82280751-82280770 MsG0180004756.01.T01:CDS 50.0%
TTCCAGCAGGTCCAGCTTTA+AGG + Chr1:82281113-82281132 None:intergenic 50.0%
TTCCTTAAAGCTGGACCTGC+TGG - Chr1:82281108-82281127 MsG0180004756.01.T01:CDS 50.0%
TTCTTCGATTGCGCCATGCA+CGG - Chr1:82280583-82280602 MsG0180004756.01.T01:CDS 50.0%
TTGCGAAATCGTCCCAGAGA+GGG - Chr1:82280816-82280835 MsG0180004756.01.T01:CDS 50.0%
! GCAACTACTGCATTTGGTGG+AGG + Chr1:82279789-82279808 None:intergenic 50.0%
! GGACAAGCCTGGTGTCAAAA+TGG - Chr1:82279341-82279360 MsG0180004756.01.T01:CDS 50.0%
! GGACGGATTTGAAAACGGGA+CGG - Chr1:82279521-82279540 MsG0180004756.01.T01:CDS 50.0%
! TGTGTCTTGGTAACCGTGCA+TGG + Chr1:82280599-82280618 None:intergenic 50.0%
!! ACCACAAAAGCACCAAGCAG+TGG - Chr1:82280531-82280550 MsG0180004756.01.T01:CDS 50.0%
!! TCAAGGGCCATTTTGACACC+AGG + Chr1:82279351-82279370 None:intergenic 50.0%
AAATGACCCGTGCGACAGCA+CGG + Chr1:82281487-82281506 None:intergenic 55.0%
ATCTGCAGCCGAGAACCACT+TGG + Chr1:82279736-82279755 None:intergenic 55.0%
GAACATGGCAAGGACAAGCC+TGG - Chr1:82279330-82279349 MsG0180004756.01.T01:CDS 55.0%
TCTGCAGCCGAGAACCACTT+GGG + Chr1:82279735-82279754 None:intergenic 55.0%
! ACCAGAAGGGTGGACTCCAT+GGG - Chr1:82280942-82280961 MsG0180004756.01.T01:CDS 55.0%
!! CTTGTGGTGGGTGTTGCCAT+CGG - Chr1:82279081-82279100 MsG0180004756.01.T01:three_prime_UTR 55.0%
!!! GCCACTGCTTGGTGCTTTTG+TGG + Chr1:82280535-82280554 None:intergenic 55.0%
AATGACCCGTGCGACAGCAC+GGG + Chr1:82281486-82281505 None:intergenic 60.0%
ACGCTCTACCACCCCTACAG+AGG - Chr1:82280295-82280314 MsG0180004756.01.T01:intron 60.0%
CTGTAGGGGTGGTAGAGCGT+TGG + Chr1:82280295-82280314 None:intergenic 60.0%
GCTTGGATCCTCTGTAGGGG+TGG + Chr1:82280306-82280325 None:intergenic 60.0%
TGAAAACGGGACGGACGGTG+AGG - Chr1:82279530-82279549 MsG0180004756.01.T01:CDS 60.0%
TTTCCACCCGTGCTGTCGCA+CGG - Chr1:82281477-82281496 MsG0180004756.01.T01:five_prime_UTR 60.0%
! AAGGGTGGACTCCATGGGCT+GGG - Chr1:82280947-82280966 MsG0180004756.01.T01:CDS 60.0%
! CACCAGAAGGGTGGACTCCA+TGG - Chr1:82280941-82280960 MsG0180004756.01.T01:CDS 60.0%
GCCCATGGAGTCCACCCTTC+TGG + Chr1:82280946-82280965 None:intergenic 65.0%
TTCCACCCGTGCTGTCGCAC+GGG - Chr1:82281478-82281497 MsG0180004756.01.T01:five_prime_UTR 65.0%
! GAAGGGTGGACTCCATGGGC+TGG - Chr1:82280946-82280965 MsG0180004756.01.T01:CDS 65.0%
GACCCGTGCGACAGCACGGG+TGG + Chr1:82281483-82281502 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
Chr1 gene 82278920 82281563 82278920 ID=MsG0180004756.01;Name=MsG0180004756.01
Chr1 mRNA 82278920 82281563 82278920 ID=MsG0180004756.01.T01;Parent=MsG0180004756.01;Name=MsG0180004756.01.T01;_AED=0.42;_eAED=0.42;_QI=122|1|1|1|1|1|2|369|572
Chr1 exon 82278920 82280007 82278920 ID=MsG0180004756.01.T01:exon:27257;Parent=MsG0180004756.01.T01
Chr1 exon 82280442 82281563 82280442 ID=MsG0180004756.01.T01:exon:27256;Parent=MsG0180004756.01.T01
Chr1 five_prime_UTR 82281442 82281563 82281442 ID=MsG0180004756.01.T01:five_prime_utr;Parent=MsG0180004756.01.T01
Chr1 CDS 82280442 82281441 82280442 ID=MsG0180004756.01.T01:cds;Parent=MsG0180004756.01.T01
Chr1 CDS 82279289 82280007 82279289 ID=MsG0180004756.01.T01:cds;Parent=MsG0180004756.01.T01
Chr1 three_prime_UTR 82278920 82279288 82278920 ID=MsG0180004756.01.T01:three_prime_utr;Parent=MsG0180004756.01.T01
Gene Sequence

>MsG0180004756.01.T01

ATGAACGGAAAAATATTAGTCTCTGGTGTATCCATCATTCTTGTGGTGGGTGTTGCCATCGGTGTTGTTGTCGTTGTTAACAAAAAGGATGATCCTGCATTAGCAGCACACCAAAAGAATGTGCAAACCATGTGTCAAGCAACTGAAGATCAAAAACTTTGTCATGACACTCTTGGCTCTGTGAAACCCGCTAATTCCTCTGACCCATCTGCTTATTTAGCAGCCGCAGTTGAAGCTAGTGCCAAAAGTGTTATCCTTGCGTTGAATATGAGTGATAAGTTAACGGTTGAACATGGCAAGGACAAGCCTGGTGTCAAAATGGCCCTTGATGATTGCAAAGACTTAATGCAATTTGCACTTGACAGTCTCGAATCATCGGCTAATTTGGTCCGCGATAACAACATTCAAGCCATTCATGACCAAACACCTGATTTTAGGAATTGGTTGAGTGCTGTTATCTCATACCAACAATCATGCATGGACGGATTTGAAAACGGGACGGACGGTGAGGATCAAGTAAAGCAACAATTGCAAACAGAAAGTTTGGACCAAATGGAGAAACTAACTGGCATTACACTTGACATTGTAACCAGTATGTCTAACATCCTTCAGACTTTTGACTTGAAGTTGGATTTGAATCCAGCTTCTCGTCGTCTTATGGAGGCTAATGAGATTGATGATGAAGGATTGCCCAAGTGGTTCTCGGCTGCAGATCGTAAGCTATTGCAAAACGCTGGTGGAGGTCCTCCACCAAATGCAGTAGTTGCTAAAGATGGTAGTGGTAAATTTAAAACAGTTAAAGAAGCTATTGACTCCTATCCTAAGGGATTCAAAGGCAGATACATTATCTATGTTAAGGCTGGGGTCTATGACGAGTACATCACCATTCCCAAAACATCAATAAATATTCTTATGTATGGCGACGGTCCTACAAAGACCATTATCACCGGTCACAAAAACTTCGTCGACGGTGTTAAGACAATGCAAACTGCCACTTTTGCAAATGTTGCAAATGGATTCATTGCAAAGTCAATAGCATTTGAGAACACAGCTGGACCACAAAAGCACCAAGCAGTGGCATTTAGAAACCAAGGAGACATGTCTGCTTTCTTCGATTGCGCCATGCACGGTTACCAAGACACATTATATGTCCAAGCTAATCGTCAATTCTACCGCAACTGCGAAATCTCTGGTACCATAGACTTCATATTCGGCTCATCACCAACCCTAATTCAAAACTCTAGAATCATTGTGCGAAAGCCAGGACCTAGTCAATTCAACACCGTAACCGCAGACGGAACAAAACAACGAAACATGGCCACAGGAATAATAATCCAGAATTGCGAAATCGTCCCAGAGAGGGATTTGTTCCCAGTTAGGAACCAATTCAAATCGTATTTGGGCAGACCATGGAAGGCATTTGCTAAGACAGTGTTTATGGAATCTAATATTGGTGATGTCATTGCACCAGAAGGGTGGACTCCATGGGCTGGGACTCAATTTCTTGATACATTGTACTATGCTGAATATGCCAATACTGGACCTGGTGCTAATCTTAATGGAAGGGTTAAGTGGAAAGGTTATCATCCTCAAATTTCTAAGAATGAAGCTGCTCAATTCACTGCAGGGTCATTCCTTAAAGCTGGACCTGCTGGAAGAGCTGATGATTGGTTGAAGGCTACTGGTATTCCTTATGCTATTGGATTTGAAAAAGCTTGA
Protein sequence

>MsG0180004756.01.T01

MNGKILVSGVSIILVVGVAIGVVVVVNKKDDPALAAHQKNVQTMCQATEDQKLCHDTLGSVKPANSSDPSAYLAAAVEASAKSVILALNMSDKLTVEHGKDKPGVKMALDDCKDLMQFALDSLESSANLVRDNNIQAIHDQTPDFRNWLSAVISYQQSCMDGFENGTDGEDQVKQQLQTESLDQMEKLTGITLDIVTSMSNILQTFDLKLDLNPASRRLMEANEIDDEGLPKWFSAADRKLLQNAGGGPPPNAVVAKDGSGKFKTVKEAIDSYPKGFKGRYIIYVKAGVYDEYITIPKTSINILMYGDGPTKTIITGHKNFVDGVKTMQTATFANVANGFIAKSIAFENTAGPQKHQAVAFRNQGDMSAFFDCAMHGYQDTLYVQANRQFYRNCEISGTIDFIFGSSPTLIQNSRIIVRKPGPSQFNTVTADGTKQRNMATGIIIQNCEIVPERDLFPVRNQFKSYLGRPWKAFAKTVFMESNIGDVIAPEGWTPWAGTQFLDTLYYAEYANTGPGANLNGRVKWKGYHPQISKNEAAQFTAGSFLKAGPAGRADDWLKATGIPYAIGFEKA*