Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180004801.01.T01 | XP_003591417.1 | 98.101 | 158 | 3 | 0 | 1 | 158 | 1 | 158 | 3.18E-110 | 320 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180004801.01.T01 | Q8LGG8 | 28 | 175 | 96 | 5 | 1 | 157 | 1 | 163 | 1.95E-16 | 75.5 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180004801.01.T01 | G7IDR7 | 98.101 | 158 | 3 | 0 | 1 | 158 | 1 | 158 | 1.52e-110 | 320 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|---|---|
| MsG0180004801.01 | MsG0580028235.01 | PPI |
| MsG0780041296.01 | MsG0180004801.01 | PPI |
| MsG0180004801.01 | MsG0080048197.01 | PPI |
| MsG0180004801.01 | MsG0480018906.01 | PPI |
| MsG0580027943.01 | MsG0180004801.01 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180004801.01.T01 | MTR_1g087200 | 98.101 | 158 | 3 | 0 | 1 | 158 | 1 | 158 | 3.85e-114 | 320 |
| MsG0180004801.01.T01 | MTR_1g083950 | 52.597 | 154 | 67 | 3 | 6 | 158 | 9 | 157 | 7.53e-56 | 173 |
| MsG0180004801.01.T01 | MTR_1g088640 | 39.375 | 160 | 91 | 4 | 2 | 158 | 7 | 163 | 9.89e-33 | 114 |
| MsG0180004801.01.T01 | MTR_1g088640 | 39.873 | 158 | 90 | 4 | 2 | 158 | 7 | 160 | 1.93e-31 | 110 |
| MsG0180004801.01.T01 | MTR_1g054750 | 34.118 | 170 | 96 | 5 | 2 | 158 | 17 | 183 | 2.89e-30 | 108 |
| MsG0180004801.01.T01 | MTR_1g054765 | 35.882 | 170 | 88 | 5 | 7 | 158 | 4 | 170 | 2.87e-29 | 105 |
| MsG0180004801.01.T01 | MTR_7g108830 | 41.026 | 156 | 87 | 4 | 5 | 158 | 6 | 158 | 5.74e-27 | 99.8 |
| MsG0180004801.01.T01 | MTR_8g058620 | 41.026 | 156 | 87 | 4 | 5 | 158 | 6 | 158 | 5.74e-27 | 99.8 |
| MsG0180004801.01.T01 | MTR_5g065980 | 35.185 | 162 | 91 | 4 | 8 | 156 | 10 | 170 | 1.14e-26 | 99.4 |
| MsG0180004801.01.T01 | MTR_5g065980 | 35.185 | 162 | 89 | 4 | 8 | 156 | 10 | 168 | 1.43e-26 | 99.0 |
| MsG0180004801.01.T01 | MTR_5g077130 | 36.129 | 155 | 85 | 5 | 10 | 156 | 9 | 157 | 2.35e-21 | 85.1 |
| MsG0180004801.01.T01 | MTR_2g089350 | 32.738 | 168 | 89 | 6 | 6 | 158 | 25 | 183 | 2.50e-20 | 84.0 |
| MsG0180004801.01.T01 | MTR_5g077130 | 35.404 | 161 | 79 | 6 | 10 | 156 | 9 | 158 | 3.68e-20 | 82.0 |
| MsG0180004801.01.T01 | MTR_1g088620 | 63.636 | 55 | 20 | 0 | 104 | 158 | 228 | 282 | 5.64e-18 | 79.0 |
| MsG0180004801.01.T01 | MTR_4g019800 | 33.129 | 163 | 91 | 6 | 4 | 156 | 3 | 157 | 3.62e-17 | 74.3 |
| MsG0180004801.01.T01 | MTR_6g006190 | 27.168 | 173 | 100 | 4 | 1 | 157 | 1 | 163 | 7.44e-17 | 73.9 |
| MsG0180004801.01.T01 | MTR_2g034200 | 28.481 | 158 | 101 | 3 | 6 | 156 | 5 | 157 | 4.11e-16 | 71.6 |
| MsG0180004801.01.T01 | MTR_4g064933 | 33.533 | 167 | 83 | 4 | 6 | 157 | 5 | 158 | 9.69e-16 | 70.5 |
| MsG0180004801.01.T01 | MTR_5g065980 | 32.394 | 142 | 80 | 4 | 8 | 136 | 10 | 148 | 1.66e-15 | 70.9 |
| MsG0180004801.01.T01 | MTR_7g065770 | 29.091 | 165 | 95 | 4 | 4 | 156 | 3 | 157 | 3.43e-13 | 63.9 |
| MsG0180004801.01.T01 | MTR_6g006190 | 39.683 | 63 | 38 | 0 | 95 | 157 | 77 | 139 | 2.61e-12 | 61.2 |
| MsG0180004801.01.T01 | MTR_1717s0010 | 29.193 | 161 | 88 | 5 | 6 | 143 | 42 | 199 | 6.93e-12 | 61.6 |
| MsG0180004801.01.T01 | MTR_1527s0010 | 29.193 | 161 | 88 | 5 | 6 | 143 | 42 | 199 | 6.93e-12 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180004801.01.T01 | AT3G62550 | 61.146 | 157 | 58 | 3 | 2 | 157 | 3 | 157 | 5.66e-64 | 193 |
| MsG0180004801.01.T01 | AT3G11930 | 36.970 | 165 | 89 | 4 | 6 | 158 | 33 | 194 | 2.42e-29 | 106 |
| MsG0180004801.01.T01 | AT3G11930 | 36.747 | 166 | 89 | 4 | 6 | 158 | 33 | 195 | 3.58e-29 | 106 |
| MsG0180004801.01.T01 | AT3G11930 | 36.527 | 167 | 89 | 4 | 6 | 158 | 33 | 196 | 4.61e-29 | 106 |
| MsG0180004801.01.T01 | AT2G47710 | 39.869 | 153 | 86 | 4 | 8 | 158 | 10 | 158 | 1.11e-27 | 101 |
| MsG0180004801.01.T01 | AT3G58450 | 35.802 | 162 | 90 | 5 | 8 | 158 | 32 | 190 | 2.97e-27 | 101 |
| MsG0180004801.01.T01 | AT3G58450 | 36.076 | 158 | 88 | 4 | 8 | 158 | 32 | 183 | 9.11e-27 | 100 |
| MsG0180004801.01.T01 | AT1G09740 | 37.975 | 158 | 86 | 4 | 8 | 156 | 10 | 164 | 1.00e-26 | 99.4 |
| MsG0180004801.01.T01 | AT1G09740 | 37.975 | 158 | 86 | 4 | 8 | 156 | 10 | 164 | 1.00e-26 | 99.4 |
| MsG0180004801.01.T01 | AT1G68300 | 35.065 | 154 | 91 | 3 | 6 | 156 | 10 | 157 | 6.06e-26 | 97.1 |
| MsG0180004801.01.T01 | AT1G11360 | 36.420 | 162 | 92 | 4 | 5 | 158 | 37 | 195 | 4.14e-24 | 94.4 |
| MsG0180004801.01.T01 | AT1G11360 | 36.420 | 162 | 92 | 4 | 5 | 158 | 37 | 195 | 4.14e-24 | 94.4 |
| MsG0180004801.01.T01 | AT1G11360 | 36.420 | 162 | 92 | 4 | 5 | 158 | 37 | 195 | 4.14e-24 | 94.4 |
| MsG0180004801.01.T01 | AT1G11360 | 36.420 | 162 | 92 | 4 | 5 | 158 | 37 | 195 | 4.14e-24 | 94.4 |
| MsG0180004801.01.T01 | AT3G11930 | 31.771 | 192 | 89 | 5 | 6 | 158 | 33 | 221 | 3.79e-23 | 91.3 |
| MsG0180004801.01.T01 | AT5G14680 | 26.506 | 166 | 110 | 3 | 1 | 157 | 1 | 163 | 2.25e-18 | 77.8 |
| MsG0180004801.01.T01 | AT3G01520 | 28.000 | 175 | 96 | 5 | 1 | 157 | 1 | 163 | 1.99e-17 | 75.5 |
| MsG0180004801.01.T01 | AT3G03270 | 29.697 | 165 | 94 | 4 | 4 | 156 | 3 | 157 | 1.64e-15 | 70.1 |
| MsG0180004801.01.T01 | AT3G53990 | 27.215 | 158 | 107 | 2 | 4 | 156 | 3 | 157 | 4.92e-15 | 68.6 |
| MsG0180004801.01.T01 | AT3G17020 | 29.518 | 166 | 98 | 4 | 2 | 156 | 3 | 160 | 1.01e-14 | 67.8 |
Find 46 sgRNAs with CRISPR-Local
Find 86 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAATTTGGTTTCCTATTTA+AGG | 0.145252 | 1:+82927001 | MsG0180004801.01.T01:three_prime_UTR |
| AACCATAGTTCATGAGAATT+TGG | 0.184093 | 1:+82926987 | MsG0180004801.01.T01:exon |
| CCTTGTTGAAATTTCATAAA+TGG | 0.186323 | 1:+82927147 | MsG0180004801.01.T01:three_prime_UTR |
| CACAATTACAACTGGGCATT+TGG | 0.240443 | 1:-82926960 | None:intergenic |
| CAAAGTATCAATTGTATCAT+TGG | 0.275490 | 1:-82926512 | None:intergenic |
| AAGGCATCTTAAAATATTAC+TGG | 0.277016 | 1:+82927020 | MsG0180004801.01.T01:three_prime_UTR |
| AGTAATTAATACATACAAAA+TGG | 0.316777 | 1:+82925716 | MsG0180004801.01.T01:exon |
| CAATGATACAATTGATACTT+TGG | 0.330035 | 1:+82926513 | MsG0180004801.01.T01:CDS |
| TGTTGTTAGTGTCAGCAATA+AGG | 0.334363 | 1:-82925818 | None:intergenic |
| GGTTGCTTCACAATTACAAC+TGG | 0.349891 | 1:-82926968 | None:intergenic |
| AAAGAGAGAACGGAAGATTA+TGG | 0.358619 | 1:+82925740 | MsG0180004801.01.T01:CDS |
| AACCAAATTCTCATGAACTA+TGG | 0.376902 | 1:-82926989 | None:intergenic |
| AGAGCATGTATGCACTTTCC+TGG | 0.390396 | 1:+82925784 | MsG0180004801.01.T01:CDS |
| CCAATTTGCAGGGCACTACT+TGG | 0.399427 | 1:+82926908 | MsG0180004801.01.T01:intron |
| ACCTTCTGCTGTCTACTCAT+TGG | 0.404228 | 1:+82925872 | MsG0180004801.01.T01:CDS |
| TTGAAATTTCATAAATGGTA+AGG | 0.417945 | 1:+82927152 | MsG0180004801.01.T01:three_prime_UTR |
| AAATTTCAACAAGGCACCTT+GGG | 0.444082 | 1:-82927138 | None:intergenic |
| GGAATGGATTATATAGAAGC+TGG | 0.444483 | 1:-82925620 | None:intergenic |
| GTCTACTCATTGGATTCTGC+AGG | 0.448519 | 1:+82925882 | MsG0180004801.01.T01:CDS |
| ATAGAGAAAATAGTTGGTAC+TGG | 0.458875 | 1:+82926721 | MsG0180004801.01.T01:CDS |
| CTATATAATCCATTCCCCAC+TGG | 0.486372 | 1:+82925627 | MsG0180004801.01.T01:five_prime_UTR |
| GAAATTTCAACAAGGCACCT+TGG | 0.509259 | 1:-82927139 | None:intergenic |
| GCAACGCAGCAAAGAAACTA+GGG | 0.514798 | 1:+82926764 | MsG0180004801.01.T01:CDS |
| TGCAACGCAGCAAAGAAACT+AGG | 0.519057 | 1:+82926763 | MsG0180004801.01.T01:CDS |
| ATAAATATAGAGAAAATAGT+TGG | 0.520642 | 1:+82926715 | MsG0180004801.01.T01:CDS |
| ACCTTAGTCATGGGAAGTCA+TGG | 0.528245 | 1:+82926793 | MsG0180004801.01.T01:CDS |
| TGTATAATATAAAAGTTCCA+TGG | 0.536117 | 1:+82927107 | MsG0180004801.01.T01:three_prime_UTR |
| GCCATGACTTCCCATGACTA+AGG | 0.537843 | 1:-82926794 | None:intergenic |
| GTCATGGGAAGTCATGGCTA+TGG | 0.540428 | 1:+82926799 | MsG0180004801.01.T01:CDS |
| GGTAGCTGTTGATGAGAGTG+AGG | 0.545867 | 1:+82925761 | MsG0180004801.01.T01:CDS |
| TCCAATGAGTAGACAGCAGA+AGG | 0.550516 | 1:-82925873 | None:intergenic |
| AGAATGAAACCAGTGGGGAA+TGG | 0.554457 | 1:-82925636 | None:intergenic |
| AGGGGCTGATACCTTAGTCA+TGG | 0.560207 | 1:+82926783 | MsG0180004801.01.T01:CDS |
| TAATGAAGAATGAAACCAGT+GGG | 0.569999 | 1:-82925642 | None:intergenic |
| AGGCATCTTAAAATATTACT+GGG | 0.572137 | 1:+82927021 | MsG0180004801.01.T01:three_prime_UTR |
| GAATGGATTATATAGAAGCT+GGG | 0.594959 | 1:-82925619 | None:intergenic |
| CCATTTATGAAATTTCAACA+AGG | 0.619731 | 1:-82927147 | None:intergenic |
| ATGGCTATGGATTCATCAAG+AGG | 0.623962 | 1:+82926812 | MsG0180004801.01.T01:CDS |
| ACAAAATGGAAAAGAGAGAA+CGG | 0.623967 | 1:+82925730 | MsG0180004801.01.T01:exon |
| GGGGCTGATACCTTAGTCAT+GGG | 0.624939 | 1:+82926784 | MsG0180004801.01.T01:CDS |
| AATAAGGTTACTGATAGACC+AGG | 0.625419 | 1:-82925802 | None:intergenic |
| AATGAGTAGACAGCAGAAGG+TGG | 0.668557 | 1:-82925870 | None:intergenic |
| GTTGCTTCACAATTACAACT+GGG | 0.683814 | 1:-82926967 | None:intergenic |
| CAACGCAGCAAAGAAACTAG+GGG | 0.702473 | 1:+82926765 | MsG0180004801.01.T01:CDS |
| ATAATGAAGAATGAAACCAG+TGG | 0.706267 | 1:-82925643 | None:intergenic |
| AATGAAGAATGAAACCAGTG+GGG | 0.750864 | 1:-82925641 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTAAGTTTTATTAGTAAAA+AGG | - | Chr1:82926040-82926059 | None:intergenic | 10.0% |
| !!! | TTTTAGAATATATAAAATGA+TGG | + | Chr1:82926865-82926884 | MsG0180004801.01.T01:intron | 10.0% |
| !! | AGTAATTAATACATACAAAA+TGG | + | Chr1:82925716-82925735 | MsG0180004801.01.T01:exon | 15.0% |
| !! | ATAAATATAGAGAAAATAGT+TGG | + | Chr1:82926715-82926734 | MsG0180004801.01.T01:CDS | 15.0% |
| !! | ATGTTTATTGAATACTAATT+TGG | + | Chr1:82926459-82926478 | MsG0180004801.01.T01:intron | 15.0% |
| !! | TAAAACATTAAACACATAAT+TGG | + | Chr1:82925931-82925950 | MsG0180004801.01.T01:intron | 15.0% |
| !!! | AAACTAATATTTTTGTTGAT+AGG | + | Chr1:82926061-82926080 | MsG0180004801.01.T01:intron | 15.0% |
| !!! | ATGTGTTTAATGTTTTAATA+AGG | - | Chr1:82925928-82925947 | None:intergenic | 15.0% |
| !! | AAACTGAACAAAAATTGAAT+AGG | + | Chr1:82927202-82927221 | MsG0180004801.01.T01:three_prime_UTR | 20.0% |
| !! | TATGTAATTACTATTACTCT+TGG | + | Chr1:82926424-82926443 | MsG0180004801.01.T01:intron | 20.0% |
| !! | TGTATAATATAAAAGTTCCA+TGG | + | Chr1:82927107-82927126 | MsG0180004801.01.T01:three_prime_UTR | 20.0% |
| !! | TTGAAATTTCATAAATGGTA+AGG | + | Chr1:82927152-82927171 | MsG0180004801.01.T01:three_prime_UTR | 20.0% |
| !!! | ACTTATTTCTGAAGATTATT+GGG | - | Chr1:82925961-82925980 | None:intergenic | 20.0% |
| !!! | GACTTGGTATTATTATTTAT+AGG | + | Chr1:82926394-82926413 | MsG0180004801.01.T01:intron | 20.0% |
| !!! | TAGGTTTTGATATATATATG+AGG | + | Chr1:82925992-82926011 | MsG0180004801.01.T01:intron | 20.0% |
| !!! | TATTTTAAGATGCCTTAAAT+AGG | - | Chr1:82927016-82927035 | None:intergenic | 20.0% |
| !!! | TGGTAGTAATATATTTTACA+GGG | + | Chr1:82926479-82926498 | MsG0180004801.01.T01:intron | 20.0% |
| !!! | TTGGTAGTAATATATTTTAC+AGG | + | Chr1:82926478-82926497 | MsG0180004801.01.T01:intron | 20.0% |
| ! | ACATTAAACACATAATTGGT+CGG | + | Chr1:82925935-82925954 | MsG0180004801.01.T01:intron | 25.0% |
| ! | AGGCATCTTAAAATATTACT+GGG | + | Chr1:82927021-82927040 | MsG0180004801.01.T01:three_prime_UTR | 25.0% |
| ! | ATAATCTTCAGAAATAAGTG+AGG | + | Chr1:82925962-82925981 | MsG0180004801.01.T01:intron | 25.0% |
| ! | CAATGATACAATTGATACTT+TGG | + | Chr1:82926513-82926532 | MsG0180004801.01.T01:CDS | 25.0% |
| ! | CCATTTATGAAATTTCAACA+AGG | - | Chr1:82927150-82927169 | None:intergenic | 25.0% |
| ! | CCTTGTTGAAATTTCATAAA+TGG | + | Chr1:82927147-82927166 | MsG0180004801.01.T01:three_prime_UTR | 25.0% |
| !! | AAGGCATCTTAAAATATTAC+TGG | + | Chr1:82927020-82927039 | MsG0180004801.01.T01:three_prime_UTR | 25.0% |
| !! | AGAATTTGGTTTCCTATTTA+AGG | + | Chr1:82927001-82927020 | MsG0180004801.01.T01:three_prime_UTR | 25.0% |
| !! | CAAAGTATCAATTGTATCAT+TGG | - | Chr1:82926515-82926534 | None:intergenic | 25.0% |
| !! | TAAGTCAATATATGTTGACT+TGG | + | Chr1:82926378-82926397 | MsG0180004801.01.T01:intron | 25.0% |
| !!! | CACTTATTTCTGAAGATTAT+TGG | - | Chr1:82925962-82925981 | None:intergenic | 25.0% |
| !!! | CTTATTTTATAAGCTCTTCA+AGG | - | Chr1:82926274-82926293 | None:intergenic | 25.0% |
| AAATAAGTGAGGCATGAAAT+AGG | + | Chr1:82925973-82925992 | MsG0180004801.01.T01:intron | 30.0% | |
| AACCAAATTCTCATGAACTA+TGG | - | Chr1:82926992-82927011 | None:intergenic | 30.0% | |
| AACCATAGTTCATGAGAATT+TGG | + | Chr1:82926987-82927006 | MsG0180004801.01.T01:exon | 30.0% | |
| ACAAAATGGAAAAGAGAGAA+CGG | + | Chr1:82925730-82925749 | MsG0180004801.01.T01:exon | 30.0% | |
| ACTCATAGACATGTTATGAA+CGG | + | Chr1:82926303-82926322 | MsG0180004801.01.T01:intron | 30.0% | |
| ATAATGAAGAATGAAACCAG+TGG | - | Chr1:82925646-82925665 | None:intergenic | 30.0% | |
| TAATGAAGAATGAAACCAGT+GGG | - | Chr1:82925645-82925664 | None:intergenic | 30.0% | |
| ! | ATAGAGAAAATAGTTGGTAC+TGG | + | Chr1:82926721-82926740 | MsG0180004801.01.T01:CDS | 30.0% |
| ! | CGAAATAAGTTGTTGTTGTT+TGG | - | Chr1:82926343-82926362 | None:intergenic | 30.0% |
| ! | GATGGCATAACTAACTTTTA+TGG | + | Chr1:82926883-82926902 | MsG0180004801.01.T01:intron | 30.0% |
| !! | GAATGGATTATATAGAAGCT+GGG | - | Chr1:82925622-82925641 | None:intergenic | 30.0% |
| AAAGAGAGAACGGAAGATTA+TGG | + | Chr1:82925740-82925759 | MsG0180004801.01.T01:CDS | 35.0% | |
| AAAGTGGGAAAAAATTGAGC+TGG | - | Chr1:82926630-82926649 | None:intergenic | 35.0% | |
| AATAAGGTTACTGATAGACC+AGG | - | Chr1:82925805-82925824 | None:intergenic | 35.0% | |
| AATGAAGAATGAAACCAGTG+GGG | - | Chr1:82925644-82925663 | None:intergenic | 35.0% | |
| GTTGCTTCACAATTACAACT+GGG | - | Chr1:82926970-82926989 | None:intergenic | 35.0% | |
| TGTTGTTAGTGTCAGCAATA+AGG | - | Chr1:82925821-82925840 | None:intergenic | 35.0% | |
| TTGTTCATCATAACAAGTCG+CGG | - | Chr1:82926124-82926143 | None:intergenic | 35.0% | |
| ! | AAATTTCAACAAGGCACCTT+GGG | - | Chr1:82927141-82927160 | None:intergenic | 35.0% |
| !! | GGAATGGATTATATAGAAGC+TGG | - | Chr1:82925623-82925642 | None:intergenic | 35.0% |
| !! | TTTTATGGTGCCAATTTGCA+GGG | + | Chr1:82926898-82926917 | MsG0180004801.01.T01:intron | 35.0% |
| !!! | TTCCATGGTTATTTTTCCCA+AGG | + | Chr1:82927122-82927141 | MsG0180004801.01.T01:three_prime_UTR | 35.0% |
| ATGGCTATGGATTCATCAAG+AGG | + | Chr1:82926812-82926831 | MsG0180004801.01.T01:CDS | 40.0% | |
| CACAATTACAACTGGGCATT+TGG | - | Chr1:82926963-82926982 | None:intergenic | 40.0% | |
| CACCTTGGGAAAAATAACCA+TGG | - | Chr1:82927127-82927146 | None:intergenic | 40.0% | |
| CTATATAATCCATTCCCCAC+TGG | + | Chr1:82925627-82925646 | MsG0180004801.01.T01:five_prime_UTR | 40.0% | |
| GGTTGCTTCACAATTACAAC+TGG | - | Chr1:82926971-82926990 | None:intergenic | 40.0% | |
| TTGATAGGCCTTAAACGAGA+GGG | + | Chr1:82926076-82926095 | MsG0180004801.01.T01:intron | 40.0% | |
| ! | GAAATTTCAACAAGGCACCT+TGG | - | Chr1:82927142-82927161 | None:intergenic | 40.0% |
| ! | GTCTTTTTGTCTGCAATACG+AGG | + | Chr1:82926014-82926033 | MsG0180004801.01.T01:intron | 40.0% |
| !! | CTTTTATGGTGCCAATTTGC+AGG | + | Chr1:82926897-82926916 | MsG0180004801.01.T01:intron | 40.0% |
| AATGAGTAGACAGCAGAAGG+TGG | - | Chr1:82925873-82925892 | None:intergenic | 45.0% | |
| ACCTTAGTCATGGGAAGTCA+TGG | + | Chr1:82926793-82926812 | MsG0180004801.01.T01:CDS | 45.0% | |
| ACCTTCTGCTGTCTACTCAT+TGG | + | Chr1:82925872-82925891 | MsG0180004801.01.T01:CDS | 45.0% | |
| AGAATGAAACCAGTGGGGAA+TGG | - | Chr1:82925639-82925658 | None:intergenic | 45.0% | |
| AGAGCATGTATGCACTTTCC+TGG | + | Chr1:82925784-82925803 | MsG0180004801.01.T01:CDS | 45.0% | |
| CAACGCAGCAAAGAAACTAG+GGG | + | Chr1:82926765-82926784 | MsG0180004801.01.T01:CDS | 45.0% | |
| CACTAAAGCCCTCTCGTTTA+AGG | - | Chr1:82926087-82926106 | None:intergenic | 45.0% | |
| GCAACGCAGCAAAGAAACTA+GGG | + | Chr1:82926764-82926783 | MsG0180004801.01.T01:CDS | 45.0% | |
| GTCTACTCATTGGATTCTGC+AGG | + | Chr1:82925882-82925901 | MsG0180004801.01.T01:CDS | 45.0% | |
| TCCAATGAGTAGACAGCAGA+AGG | - | Chr1:82925876-82925895 | None:intergenic | 45.0% | |
| TGCAACGCAGCAAAGAAACT+AGG | + | Chr1:82926763-82926782 | MsG0180004801.01.T01:CDS | 45.0% | |
| ! | CTTAAACGAGAGGGCTTTAG+TGG | + | Chr1:82926085-82926104 | MsG0180004801.01.T01:intron | 45.0% |
| ! | GCTTTAGTGGCCTTACCTTT+AGG | + | Chr1:82926098-82926117 | MsG0180004801.01.T01:intron | 45.0% |
| ! | GTTGATAGGCCTTAAACGAG+AGG | + | Chr1:82926075-82926094 | MsG0180004801.01.T01:intron | 45.0% |
| !!! | TTTTTTTTTTAAAAAAAAGT+GGG | - | Chr1:82926645-82926664 | None:intergenic | 5.0% |
| !!! | TTTTTTTTTTTAAAAAAAAG+TGG | - | Chr1:82926646-82926665 | None:intergenic | 5.0% |
| AGGGGCTGATACCTTAGTCA+TGG | + | Chr1:82926783-82926802 | MsG0180004801.01.T01:CDS | 50.0% | |
| CATAACAAGTCGCGGCCTAA+AGG | - | Chr1:82926116-82926135 | None:intergenic | 50.0% | |
| CCAAGTAGTGCCCTGCAAAT+TGG | - | Chr1:82926911-82926930 | None:intergenic | 50.0% | |
| GCCATGACTTCCCATGACTA+AGG | - | Chr1:82926797-82926816 | None:intergenic | 50.0% | |
| GGGGCTGATACCTTAGTCAT+GGG | + | Chr1:82926784-82926803 | MsG0180004801.01.T01:CDS | 50.0% | |
| GTCATGGGAAGTCATGGCTA+TGG | + | Chr1:82926799-82926818 | MsG0180004801.01.T01:CDS | 50.0% | |
| ! | CCAATTTGCAGGGCACTACT+TGG | + | Chr1:82926908-82926927 | MsG0180004801.01.T01:intron | 50.0% |
| ! | GGTAGCTGTTGATGAGAGTG+AGG | + | Chr1:82925761-82925780 | MsG0180004801.01.T01:CDS | 50.0% |
| CAAGTCGCGGCCTAAAGGTA+AGG | - | Chr1:82926111-82926130 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr1 | gene | 82925615 | 82927223 | 82925615 | ID=MsG0180004801.01;Name=MsG0180004801.01 |
| Chr1 | mRNA | 82925615 | 82927223 | 82925615 | ID=MsG0180004801.01.T01;Parent=MsG0180004801.01;Name=MsG0180004801.01.T01;_AED=0.36;_eAED=0.36;_QI=120|1|1|1|1|1|4|229|158 |
| Chr1 | exon | 82925615 | 82925903 | 82925615 | ID=MsG0180004801.01.T01:exon:27470;Parent=MsG0180004801.01.T01 |
| Chr1 | exon | 82926500 | 82926612 | 82926500 | ID=MsG0180004801.01.T01:exon:27471;Parent=MsG0180004801.01.T01 |
| Chr1 | exon | 82926715 | 82926833 | 82926715 | ID=MsG0180004801.01.T01:exon:27472;Parent=MsG0180004801.01.T01 |
| Chr1 | exon | 82926919 | 82927223 | 82926919 | ID=MsG0180004801.01.T01:exon:27473;Parent=MsG0180004801.01.T01 |
| Chr1 | five_prime_UTR | 82925615 | 82925734 | 82925615 | ID=MsG0180004801.01.T01:five_prime_utr;Parent=MsG0180004801.01.T01 |
| Chr1 | CDS | 82925735 | 82925903 | 82925735 | ID=MsG0180004801.01.T01:cds;Parent=MsG0180004801.01.T01 |
| Chr1 | CDS | 82926500 | 82926612 | 82926500 | ID=MsG0180004801.01.T01:cds;Parent=MsG0180004801.01.T01 |
| Chr1 | CDS | 82926715 | 82926833 | 82926715 | ID=MsG0180004801.01.T01:cds;Parent=MsG0180004801.01.T01 |
| Chr1 | CDS | 82926919 | 82926994 | 82926919 | ID=MsG0180004801.01.T01:cds;Parent=MsG0180004801.01.T01 |
| Chr1 | three_prime_UTR | 82926995 | 82927223 | 82926995 | ID=MsG0180004801.01.T01:three_prime_utr;Parent=MsG0180004801.01.T01 |
| Gene Sequence |
| Protein sequence |
