AlfalfaGEDB | MsG0180004879.01

M. sativa cultivar ZhongmuNo.1 / MsG0180004879.01

KEGG: K00799
GO: GO:0005515
PFAM: PF00043 PF02798

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180004879.01.T01	XP_013469191.1	92.523	214	16	0	1	214	1	214	1.42E-145	414

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180004879.01.T01	P46423	65.7	207	71	0	3	209	2	208	2.22E-98	287

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180004879.01.T01	A0A072VNK7	92.523	214	16	0	1	214	1	214	6.79e-146	414

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0180004879.01	MsG0780041316.01	0.810328	1.217134e-50	7.315412e-48

Showing 1 to 1 of 1 entries

Previous1Next

PPI

Show entries

Search:

Gene1	Gene2	Type
MsG0180004879.01	MsG0180004880.01	PPI
MsG0180004880.01	MsG0180004879.01	PPI
MsG0180004881.01	MsG0180004879.01	PPI

Showing 1 to 3 of 3 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180004879.01.T01	MTR_1g088840	92.523	214	16	0	1	214	1	214	1.72e-149	414
MsG0180004879.01.T01	MTR_1g088825	92.523	214	16	0	1	214	1	214	1.72e-149	414
MsG0180004879.01.T01	MTR_1g088845	86.916	214	28	0	1	214	1	214	1.61e-139	389
MsG0180004879.01.T01	MTR_1g088840	91.566	166	14	0	49	214	2	167	3.98e-112	318
MsG0180004879.01.T01	MTR_1g088840	92.373	118	9	0	97	214	1	118	3.76e-77	228
MsG0180004879.01.T01	MTR_3g064700	46.117	206	110	1	4	208	3	208	3.11e-60	188
MsG0180004879.01.T01	MTR_3g450930	44.498	209	114	2	4	211	3	210	4.87e-59	185
MsG0180004879.01.T01	MTR_3g450790	44.019	209	115	2	4	211	3	210	3.76e-58	182
MsG0180004879.01.T01	MTR_1g088850	39.713	209	125	1	3	210	2	210	1.62e-56	179
MsG0180004879.01.T01	MTR_5g090920	44.019	209	112	4	4	209	3	209	8.92e-56	177

Showing 1 to 10 of 15 entries

Previous1 2Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180004879.01.T01	AT1G02920	63.158	209	77	0	1	209	1	209	5.23e-89	261
MsG0180004879.01.T01	AT1G02930	61.722	209	79	1	1	209	1	208	6.61e-88	258
MsG0180004879.01.T01	AT1G02930	61.722	209	79	1	1	209	1	208	6.61e-88	258
MsG0180004879.01.T01	AT2G47730	58.049	205	85	1	6	209	54	258	3.97e-86	256
MsG0180004879.01.T01	AT2G47730	58.049	205	85	1	6	209	54	258	3.97e-86	256
MsG0180004879.01.T01	AT4G02520	59.242	211	83	1	1	208	1	211	6.51e-85	251
MsG0180004879.01.T01	AT2G02930	58.962	212	84	1	1	209	1	212	3.80e-83	246
MsG0180004879.01.T01	AT1G02950	54.369	206	93	1	1	205	24	229	5.69e-78	234
MsG0180004879.01.T01	AT1G02950	54.950	202	90	1	5	205	26	227	2.71e-77	232
MsG0180004879.01.T01	AT1G02950	54.950	202	90	1	5	205	26	227	2.71e-77	232

Showing 1 to 10 of 25 entries

Previous1 2 3Next

Find 65 sgRNAs with CRISPR-Local

Find 85 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTGAAATGCAGAATCA+AGG	0.457301	1:-83907447	MsG0180004879.01.T01:intron
AAAGCTGGAACTTGACCAAA+TGG	0.480424	1:+83907727	None:intergenic
AAAGTGTAATATTGATTTGT+TGG	0.444695	1:-83906781	MsG0180004879.01.T01:three_prime_UTR
AAATCTCCATCTTCAAAAGC+TGG	0.446504	1:+83907712	None:intergenic
AAATTGAAATGCAGAATCAA+GGG	0.575285	1:-83907446	MsG0180004879.01.T01:intron
AACAATGAGTATGCTGATAA+GGG	0.368137	1:-83907406	MsG0180004879.01.T01:CDS
AAGTAGCATCAAAACTTGTT+CGG	0.398448	1:-83907303	MsG0180004879.01.T01:CDS
AAGTGTAATATTGATTTGTT+GGG	0.483260	1:-83906780	MsG0180004879.01.T01:three_prime_UTR
ACAATGAGTATGCTGATAAG+GGG	0.629847	1:-83907405	MsG0180004879.01.T01:CDS
ACGATCTCATGTTAGTGCTT+GGG	0.482947	1:-83907068	MsG0180004879.01.T01:CDS

Showing 1 to 10 of 65 entries

Previous1 2 3 4 5 6 7Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AACAATGAGTATGCTGATAA+GGG	-	Chr1:83907338-83907357	MsG0180004879.01.T01:CDS	30.0%
ACTCTCACTTCGATTATTTA+TGG	+	Chr1:83907839-83907858	None:intergenic	30.0%
ACTGTCTTAATTAGGTATCA+TGG	+	Chr1:83907744-83907763	None:intergenic	30.0%
ATAACTCGAATCAAAGACAT+TGG	-	Chr1:83907912-83907931	MsG0180004879.01.T01:CDS	30.0%
ATCAAGAATGCTATCCAATT+TGG	+	Chr1:83907531-83907550	None:intergenic	30.0%
CTTACATTGAGTGATATGAA+GGG	+	Chr1:83906882-83906901	None:intergenic	30.0%
TAACAATGAGTATGCTGATA+AGG	-	Chr1:83907337-83907356	MsG0180004879.01.T01:CDS	30.0%
TCCAAGAAGATAGCAATAAT+GGG	-	Chr1:83907383-83907402	MsG0180004879.01.T01:CDS	30.0%
TCGTGATTCAAACAATTTCT+TGG	+	Chr1:83907660-83907679	None:intergenic	30.0%
TTGGGGATAAAGAGTTTATT+TGG	-	Chr1:83907467-83907486	MsG0180004879.01.T01:intron	30.0%

Showing 1 to 10 of 85 entries

Previous1 2 3 4 5…9Next

Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	83906674	83908092	83906674	ID=MsG0180004879.01;Name=MsG0180004879.01
Chr1	mRNA	83906674	83908092	83906674	ID=MsG0180004879.01.T01;Parent=MsG0180004879.01;Name=MsG0180004879.01.T01;_AED=0.47;_eAED=0.47;_QI=73\|1\|1\|1\|1\|1\|3\|335\|214
Chr1	exon	83906674	83907454	83906674	ID=MsG0180004879.01.T01:exon:9079;Parent=MsG0180004879.01.T01
Chr1	exon	83907701	83907749	83907701	ID=MsG0180004879.01.T01:exon:9078;Parent=MsG0180004879.01.T01
Chr1	exon	83907870	83908092	83907870	ID=MsG0180004879.01.T01:exon:9077;Parent=MsG0180004879.01.T01
Chr1	five_prime_UTR	83908020	83908092	83908020	ID=MsG0180004879.01.T01:five_prime_utr;Parent=MsG0180004879.01.T01
Chr1	CDS	83907870	83908019	83907870	ID=MsG0180004879.01.T01:cds;Parent=MsG0180004879.01.T01
Chr1	CDS	83907701	83907749	83907701	ID=MsG0180004879.01.T01:cds;Parent=MsG0180004879.01.T01
Chr1	CDS	83907009	83907454	83907009	ID=MsG0180004879.01.T01:cds;Parent=MsG0180004879.01.T01
Chr1	three_prime_UTR	83906674	83907008	83906674	ID=MsG0180004879.01.T01:three_prime_utr;Parent=MsG0180004879.01.T01

Gene Sequence

>MsG0180004879.01.T01

ATGGCATCAATAAAAGTGCACGGAAGCCCCTACTCAACGGCCACCATGCGGGTTACTGCAACTCTGTATGAAAAACAGATTGAGTTTGAGTTTGTTAACATTAACTTGAAGAATGGAGAACACAAAAAGGAACCCTTCATATCACTCAATCCATTTGGTCAAGTTCCAGCTTTTGAAGATGGAGATTTAAAGCTCTTTGAATCAAGGGCGATAACACAATATATTAACAATGAGTATGCTGATAAGGGGACCAAGTTAACAAGCAATGACTCCAAGAAGATAGCAATAATGGGGGTATGGTCTGAAGTGGAGAGCCAACACTTCGATCAAGTAGCATCAAAACTTGTTCGGGAATTGGGGATAAAGAGTTTATTTGGAATTCCTTTGGATCCAAAAATTGTTGAAGAGAATGAAGCCAAATTGGATAGCATTCTTGATGTGTATGAGAAAAGATTGTCTGAGTCCAAATACTTGGGAGGTGACTCTTTCACCTTGGTGGATTTGCATCATTTACCTACTTTTCATTACTTGATGAAGTCACAGACCAAGAAATTGTTTGAATCACGATCTCATGTTAGTGCTTGGGTGGCTGATATCACTGCAAGACCAGCTTGGTCTAAAGTCCTTGCCATGATACCTAATTAA

Protein sequence

>MsG0180004879.01.T01

MASIKVHGSPYSTATMRVTATLYEKQIEFEFVNINLKNGEHKKEPFISLNPFGQVPAFEDGDLKLFESRAITQYINNEYADKGTKLTSNDSKKIAIMGVWSEVESQHFDQVASKLVRELGIKSLFGIPLDPKIVEENEAKLDSILDVYEKRLSESKYLGGDSFTLVDLHHLPTFHYLMKSQTKKLFESRSHVSAWVADITARPAWSKVLAMIPN*