Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180004879.01.T01 | XP_013469191.1 | 92.523 | 214 | 16 | 0 | 1 | 214 | 1 | 214 | 1.42E-145 | 414 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180004879.01.T01 | P46423 | 65.7 | 207 | 71 | 0 | 3 | 209 | 2 | 208 | 2.22E-98 | 287 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180004879.01.T01 | A0A072VNK7 | 92.523 | 214 | 16 | 0 | 1 | 214 | 1 | 214 | 6.79e-146 | 414 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180004879.01 | MsG0780041316.01 | 0.810328 | 1.217134e-50 | 7.315412e-48 |
PPI
| Gene1 | Gene2 | Type |
|---|---|---|
| MsG0180004880.01 | MsG0180004879.01 | PPI |
| MsG0180004879.01 | MsG0180004880.01 | PPI |
| MsG0180004881.01 | MsG0180004879.01 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180004879.01.T01 | MTR_1g088840 | 92.523 | 214 | 16 | 0 | 1 | 214 | 1 | 214 | 1.72e-149 | 414 |
| MsG0180004879.01.T01 | MTR_1g088825 | 92.523 | 214 | 16 | 0 | 1 | 214 | 1 | 214 | 1.72e-149 | 414 |
| MsG0180004879.01.T01 | MTR_1g088845 | 86.916 | 214 | 28 | 0 | 1 | 214 | 1 | 214 | 1.61e-139 | 389 |
| MsG0180004879.01.T01 | MTR_1g088840 | 91.566 | 166 | 14 | 0 | 49 | 214 | 2 | 167 | 3.98e-112 | 318 |
| MsG0180004879.01.T01 | MTR_1g088840 | 92.373 | 118 | 9 | 0 | 97 | 214 | 1 | 118 | 3.76e-77 | 228 |
| MsG0180004879.01.T01 | MTR_3g064700 | 46.117 | 206 | 110 | 1 | 4 | 208 | 3 | 208 | 3.11e-60 | 188 |
| MsG0180004879.01.T01 | MTR_3g450930 | 44.498 | 209 | 114 | 2 | 4 | 211 | 3 | 210 | 4.87e-59 | 185 |
| MsG0180004879.01.T01 | MTR_3g450790 | 44.019 | 209 | 115 | 2 | 4 | 211 | 3 | 210 | 3.76e-58 | 182 |
| MsG0180004879.01.T01 | MTR_1g088850 | 39.713 | 209 | 125 | 1 | 3 | 210 | 2 | 210 | 1.62e-56 | 179 |
| MsG0180004879.01.T01 | MTR_5g090920 | 44.019 | 209 | 112 | 4 | 4 | 209 | 3 | 209 | 8.92e-56 | 177 |
| MsG0180004879.01.T01 | MTR_1g026140 | 42.130 | 216 | 119 | 3 | 4 | 213 | 5 | 220 | 2.55e-55 | 176 |
| MsG0180004879.01.T01 | MTR_5g090910 | 41.905 | 210 | 119 | 3 | 4 | 211 | 3 | 211 | 1.35e-54 | 174 |
| MsG0180004879.01.T01 | MTR_1g492670 | 86.765 | 68 | 9 | 0 | 147 | 214 | 2 | 69 | 6.31e-39 | 129 |
| MsG0180004879.01.T01 | MTR_5g090910 | 40.136 | 147 | 86 | 2 | 67 | 211 | 8 | 154 | 3.70e-32 | 114 |
| MsG0180004879.01.T01 | MTR_3g088635 | 23.013 | 239 | 152 | 5 | 4 | 210 | 1 | 239 | 3.02e-13 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180004879.01.T01 | AT1G02920 | 63.158 | 209 | 77 | 0 | 1 | 209 | 1 | 209 | 5.23e-89 | 261 |
| MsG0180004879.01.T01 | AT1G02930 | 61.722 | 209 | 79 | 1 | 1 | 209 | 1 | 208 | 6.61e-88 | 258 |
| MsG0180004879.01.T01 | AT1G02930 | 61.722 | 209 | 79 | 1 | 1 | 209 | 1 | 208 | 6.61e-88 | 258 |
| MsG0180004879.01.T01 | AT2G47730 | 58.049 | 205 | 85 | 1 | 6 | 209 | 54 | 258 | 3.97e-86 | 256 |
| MsG0180004879.01.T01 | AT2G47730 | 58.049 | 205 | 85 | 1 | 6 | 209 | 54 | 258 | 3.97e-86 | 256 |
| MsG0180004879.01.T01 | AT4G02520 | 59.242 | 211 | 83 | 1 | 1 | 208 | 1 | 211 | 6.51e-85 | 251 |
| MsG0180004879.01.T01 | AT2G02930 | 58.962 | 212 | 84 | 1 | 1 | 209 | 1 | 212 | 3.80e-83 | 246 |
| MsG0180004879.01.T01 | AT1G02950 | 54.369 | 206 | 93 | 1 | 1 | 205 | 24 | 229 | 5.69e-78 | 234 |
| MsG0180004879.01.T01 | AT1G02950 | 54.950 | 202 | 90 | 1 | 5 | 205 | 26 | 227 | 2.71e-77 | 232 |
| MsG0180004879.01.T01 | AT1G02950 | 54.950 | 202 | 90 | 1 | 5 | 205 | 26 | 227 | 2.71e-77 | 232 |
| MsG0180004879.01.T01 | AT1G02950 | 54.950 | 202 | 90 | 1 | 5 | 205 | 38 | 239 | 2.97e-77 | 233 |
| MsG0180004879.01.T01 | AT1G02940 | 47.087 | 206 | 108 | 1 | 5 | 209 | 40 | 245 | 2.66e-66 | 205 |
| MsG0180004879.01.T01 | AT1G02940 | 47.087 | 206 | 108 | 1 | 5 | 209 | 40 | 245 | 2.66e-66 | 205 |
| MsG0180004879.01.T01 | AT1G02940 | 47.087 | 206 | 108 | 1 | 5 | 209 | 65 | 270 | 3.67e-66 | 205 |
| MsG0180004879.01.T01 | AT1G02940 | 47.087 | 206 | 108 | 1 | 5 | 209 | 53 | 258 | 4.50e-66 | 205 |
| MsG0180004879.01.T01 | AT3G62760 | 47.826 | 207 | 107 | 1 | 3 | 208 | 2 | 208 | 2.91e-63 | 196 |
| MsG0180004879.01.T01 | AT1G49860 | 47.692 | 195 | 98 | 2 | 21 | 211 | 22 | 216 | 7.92e-58 | 183 |
| MsG0180004879.01.T01 | AT3G03190 | 44.498 | 209 | 115 | 1 | 4 | 211 | 3 | 211 | 5.86e-57 | 180 |
| MsG0180004879.01.T01 | AT5G17220 | 39.234 | 209 | 126 | 1 | 4 | 211 | 3 | 211 | 6.72e-52 | 167 |
| MsG0180004879.01.T01 | AT2G30860 | 40.385 | 208 | 122 | 2 | 4 | 210 | 3 | 209 | 5.92e-50 | 162 |
| MsG0180004879.01.T01 | AT2G30870 | 38.424 | 203 | 124 | 1 | 9 | 210 | 7 | 209 | 2.84e-46 | 152 |
| MsG0180004879.01.T01 | AT1G02950 | 50.704 | 142 | 69 | 1 | 65 | 205 | 60 | 201 | 4.65e-44 | 147 |
| MsG0180004879.01.T01 | AT2G30860 | 37.500 | 152 | 94 | 1 | 4 | 155 | 3 | 153 | 6.03e-31 | 112 |
| MsG0180004879.01.T01 | AT5G41210 | 25.980 | 204 | 145 | 2 | 1 | 198 | 1 | 204 | 1.48e-11 | 62.4 |
| MsG0180004879.01.T01 | AT5G41240 | 29.208 | 202 | 131 | 5 | 4 | 196 | 3 | 201 | 3.87e-11 | 62.4 |
Find 65 sgRNAs with CRISPR-Local
Find 85 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTCTCACTTCGATTATTTA+TGG | 0.098554 | 1:+83906908 | None:intergenic |
| CCCCATTATTGCTATCTTCT+TGG | 0.169803 | 1:+83907360 | None:intergenic |
| TTGGGGATAAAGAGTTTATT+TGG | 0.186179 | 1:-83907277 | MsG0180004879.01.T01:CDS |
| TTTCAAGTGTACTGTAAAAT+AGG | 0.210728 | 1:-83906703 | MsG0180004879.01.T01:three_prime_UTR |
| ATCAAGAATGCTATCCAATT+TGG | 0.237155 | 1:+83907216 | None:intergenic |
| AGAGTCACCTCCCAAGTATT+TGG | 0.266829 | 1:+83907168 | None:intergenic |
| CTCCAAGAAGATAGCAATAA+TGG | 0.269830 | 1:-83907362 | MsG0180004879.01.T01:CDS |
| TCAAAACTTGTTCGGGAATT+GGG | 0.278093 | 1:-83907295 | MsG0180004879.01.T01:CDS |
| ATATTTCTCTTAATTAAGTA+TGG | 0.278370 | 1:+83908062 | None:intergenic |
| ATCAAAACTTGTTCGGGAAT+TGG | 0.285433 | 1:-83907296 | MsG0180004879.01.T01:CDS |
| GATGGAGATTTAAAGCTCTT+TGG | 0.296201 | 1:-83907700 | MsG0180004879.01.T01:intron |
| TGAAGAGAATGAAGCCAAAT+TGG | 0.299438 | 1:-83907230 | MsG0180004879.01.T01:CDS |
| TCGTGATTCAAACAATTTCT+TGG | 0.300130 | 1:+83907087 | None:intergenic |
| CGAATCAAAGACATTGGTTA+AGG | 0.340841 | 1:-83906826 | MsG0180004879.01.T01:three_prime_UTR |
| GAAGAATGGAGAACACAAAA+AGG | 0.349354 | 1:-83907890 | MsG0180004879.01.T01:CDS |
| GGAGTCATTGCTTGTTAACT+TGG | 0.352335 | 1:+83907381 | None:intergenic |
| CGCATGGTGGCCGTTGAGTA+GGG | 0.361457 | 1:+83907970 | None:intergenic |
| AACAATGAGTATGCTGATAA+GGG | 0.368137 | 1:-83907406 | MsG0180004879.01.T01:CDS |
| TTCTTTATGTTGCAGCCATT+TGG | 0.379956 | 1:-83907742 | MsG0180004879.01.T01:intron |
| TAACAATGAGTATGCTGATA+AGG | 0.387390 | 1:-83907407 | MsG0180004879.01.T01:CDS |
| AGTAGCATCAAAACTTGTTC+GGG | 0.393847 | 1:-83907302 | MsG0180004879.01.T01:CDS |
| AAGTAGCATCAAAACTTGTT+CGG | 0.398448 | 1:-83907303 | MsG0180004879.01.T01:CDS |
| GAGTTTATTTGGAATTCCTT+TGG | 0.399412 | 1:-83907266 | MsG0180004879.01.T01:CDS |
| CCGCATGGTGGCCGTTGAGT+AGG | 0.403862 | 1:+83907969 | None:intergenic |
| TCCAAGAAGATAGCAATAAT+GGG | 0.404293 | 1:-83907361 | MsG0180004879.01.T01:CDS |
| GTTAACATTAACTTGAAGAA+TGG | 0.418899 | 1:-83907904 | MsG0180004879.01.T01:CDS |
| AAAGTGTAATATTGATTTGT+TGG | 0.444695 | 1:-83906781 | MsG0180004879.01.T01:three_prime_UTR |
| AGGTGACTCTTTCACCTTGG+TGG | 0.445525 | 1:-83907155 | MsG0180004879.01.T01:CDS |
| AAATCTCCATCTTCAAAAGC+TGG | 0.446504 | 1:+83907712 | None:intergenic |
| ACTGTCTTAATTAGGTATCA+TGG | 0.449391 | 1:+83907003 | None:intergenic |
| GAATCAAAGACATTGGTTAA+GGG | 0.449959 | 1:-83906825 | MsG0180004879.01.T01:three_prime_UTR |
| GCTTACATTGAGTGATATGA+AGG | 0.454820 | 1:+83907864 | None:intergenic |
| CACGATCTCATGTTAGTGCT+TGG | 0.456189 | 1:-83907069 | MsG0180004879.01.T01:CDS |
| AAAATTGAAATGCAGAATCA+AGG | 0.457301 | 1:-83907447 | MsG0180004879.01.T01:intron |
| ATTGTCTGAGTCCAAATACT+TGG | 0.458455 | 1:-83907179 | MsG0180004879.01.T01:CDS |
| AAAGCTGGAACTTGACCAAA+TGG | 0.480424 | 1:+83907727 | None:intergenic |
| ACGATCTCATGTTAGTGCTT+GGG | 0.482947 | 1:-83907068 | MsG0180004879.01.T01:CDS |
| AAGTGTAATATTGATTTGTT+GGG | 0.483260 | 1:-83906780 | MsG0180004879.01.T01:three_prime_UTR |
| TTGGTTAAGGGATTTGAGTC+CGG | 0.493988 | 1:-83906813 | MsG0180004879.01.T01:three_prime_UTR |
| GTGATTGATCTGCTAAATCA+TGG | 0.497615 | 1:-83908016 | MsG0180004879.01.T01:exon |
| ATGCTACTTGATCGAAGTGT+TGG | 0.510802 | 1:+83907317 | None:intergenic |
| GGGAGGTGACTCTTTCACCT+TGG | 0.520363 | 1:-83907158 | MsG0180004879.01.T01:CDS |
| TTCATCAAGTAATGAAAAGT+AGG | 0.527654 | 1:+83907118 | None:intergenic |
| CTACTCAACGGCCACCATGC+GGG | 0.529590 | 1:-83907968 | MsG0180004879.01.T01:CDS |
| CAAAACTTGTTCGGGAATTG+GGG | 0.535983 | 1:-83907294 | MsG0180004879.01.T01:CDS |
| GAATGAAGATTCTTCACTGA+AGG | 0.551224 | 1:+83906879 | None:intergenic |
| CTTAATTAGGTATCATGGCA+AGG | 0.566951 | 1:+83907008 | None:intergenic |
| AAATTGAAATGCAGAATCAA+GGG | 0.575285 | 1:-83907446 | MsG0180004879.01.T01:intron |
| GCAAGGACTTTAGACCAAGC+TGG | 0.580505 | 1:+83907025 | None:intergenic |
| GCATGGTGGCCGTTGAGTAG+GGG | 0.589594 | 1:+83907971 | None:intergenic |
| ATAACTCGAATCAAAGACAT+TGG | 0.594893 | 1:-83906832 | MsG0180004879.01.T01:three_prime_UTR |
| ATATCACTGCAAGACCAGCT+TGG | 0.601324 | 1:-83907039 | MsG0180004879.01.T01:CDS |
| TTGTCTGAGTCCAAATACTT+GGG | 0.601763 | 1:-83907178 | MsG0180004879.01.T01:CDS |
| ATCTCATGTTAGTGCTTGGG+TGG | 0.606175 | 1:-83907065 | MsG0180004879.01.T01:CDS |
| CCAAGAAGATAGCAATAATG+GGG | 0.612634 | 1:-83907360 | MsG0180004879.01.T01:CDS |
| CTTACATTGAGTGATATGAA+GGG | 0.613061 | 1:+83907865 | None:intergenic |
| GCACGGAAGCCCCTACTCAA+CGG | 0.627204 | 1:-83907980 | MsG0180004879.01.T01:CDS |
| ACAATGAGTATGCTGATAAG+GGG | 0.629847 | 1:-83907405 | MsG0180004879.01.T01:CDS |
| ATGGCATCAATAAAAGTGCA+CGG | 0.642318 | 1:-83907997 | MsG0180004879.01.T01:CDS |
| CAGAGTTGCAGTAACCCGCA+TGG | 0.653094 | 1:+83907954 | None:intergenic |
| CCTACTCAACGGCCACCATG+CGG | 0.660998 | 1:-83907969 | MsG0180004879.01.T01:CDS |
| TCTGAGTCCAAATACTTGGG+AGG | 0.681272 | 1:-83907175 | MsG0180004879.01.T01:CDS |
| CAAGAAGATAGCAATAATGG+GGG | 0.701769 | 1:-83907359 | MsG0180004879.01.T01:CDS |
| TAAATGATGCAAATCCACCA+AGG | 0.702241 | 1:+83907141 | None:intergenic |
| AGTTGCAGTAACCCGCATGG+TGG | 0.707787 | 1:+83907957 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATTTCTCTTAATTAAGTA+TGG | + | Chr1:83906685-83906704 | None:intergenic | 15.0% |
| !!! | ATACATTGATAATTTAACAT+TGG | + | Chr1:83907192-83907211 | None:intergenic | 15.0% |
| !!! | AAAGTGTAATATTGATTTGT+TGG | - | Chr1:83907963-83907982 | MsG0180004879.01.T01:CDS | 20.0% |
| !!! | AAGTGTAATATTGATTTGTT+GGG | - | Chr1:83907964-83907983 | MsG0180004879.01.T01:CDS | 20.0% |
| !!! | ATCAATATTACACTTTTGAA+AGG | + | Chr1:83907959-83907978 | None:intergenic | 20.0% |
| !!! | TTGTTTTTCAATTCTGTTTT+TGG | - | Chr1:83907790-83907809 | MsG0180004879.01.T01:intron | 20.0% |
| !!! | TTTGATTCGAGTTATTTTTA+TGG | + | Chr1:83907907-83907926 | None:intergenic | 20.0% |
| ! | AAAATTGAAATGCAGAATCA+AGG | - | Chr1:83907297-83907316 | MsG0180004879.01.T01:CDS | 25.0% |
| ! | AAATTGAAATGCAGAATCAA+GGG | - | Chr1:83907298-83907317 | MsG0180004879.01.T01:CDS | 25.0% |
| ! | ATCCAAAAACTGTCTTAATT+AGG | + | Chr1:83907752-83907771 | None:intergenic | 25.0% |
| ! | TACACTTGAAAAATGACAAT+AGG | + | Chr1:83908032-83908051 | None:intergenic | 25.0% |
| ! | TTCATCAAGTAATGAAAAGT+AGG | + | Chr1:83907629-83907648 | None:intergenic | 25.0% |
| !! | ATCAATTAGTTTGATCAATG+TGG | + | Chr1:83906979-83906998 | None:intergenic | 25.0% |
| !! | GTTAACATTAACTTGAAGAA+TGG | - | Chr1:83906840-83906859 | MsG0180004879.01.T01:three_prime_UTR | 25.0% |
| !! | TACCTAATTAAGACAGTTTT+TGG | - | Chr1:83907747-83907766 | MsG0180004879.01.T01:intron | 25.0% |
| !! | TCATTCTCTTCAACAATTTT+TGG | + | Chr1:83907506-83907525 | None:intergenic | 25.0% |
| !! | TTTCAAGTGTACTGTAAAAT+AGG | - | Chr1:83908041-83908060 | MsG0180004879.01.T01:five_prime_UTR | 25.0% |
| AACAATGAGTATGCTGATAA+GGG | - | Chr1:83907338-83907357 | MsG0180004879.01.T01:CDS | 30.0% | |
| ACTCTCACTTCGATTATTTA+TGG | + | Chr1:83907839-83907858 | None:intergenic | 30.0% | |
| ACTGTCTTAATTAGGTATCA+TGG | + | Chr1:83907744-83907763 | None:intergenic | 30.0% | |
| ATAACTCGAATCAAAGACAT+TGG | - | Chr1:83907912-83907931 | MsG0180004879.01.T01:CDS | 30.0% | |
| ATCAAGAATGCTATCCAATT+TGG | + | Chr1:83907531-83907550 | None:intergenic | 30.0% | |
| CTTACATTGAGTGATATGAA+GGG | + | Chr1:83906882-83906901 | None:intergenic | 30.0% | |
| TAACAATGAGTATGCTGATA+AGG | - | Chr1:83907337-83907356 | MsG0180004879.01.T01:CDS | 30.0% | |
| TCCAAGAAGATAGCAATAAT+GGG | - | Chr1:83907383-83907402 | MsG0180004879.01.T01:CDS | 30.0% | |
| TCGTGATTCAAACAATTTCT+TGG | + | Chr1:83907660-83907679 | None:intergenic | 30.0% | |
| TTGGGGATAAAGAGTTTATT+TGG | - | Chr1:83907467-83907486 | MsG0180004879.01.T01:intron | 30.0% | |
| ! | AAGTAGCATCAAAACTTGTT+CGG | - | Chr1:83907441-83907460 | MsG0180004879.01.T01:intron | 30.0% |
| ! | ATTAGTTTGATCAATGTGGT+TGG | + | Chr1:83906975-83906994 | None:intergenic | 30.0% |
| ! | GAATCAAAGACATTGGTTAA+GGG | - | Chr1:83907919-83907938 | MsG0180004879.01.T01:CDS | 30.0% |
| ! | GAGTTTATTTGGAATTCCTT+TGG | - | Chr1:83907478-83907497 | MsG0180004879.01.T01:intron | 30.0% |
| ! | TTTTTATGGAAATGTGTGCT+TGG | + | Chr1:83907893-83907912 | None:intergenic | 30.0% |
| !! | ATTACACTTTTGAAAGGAAC+CGG | + | Chr1:83907953-83907972 | None:intergenic | 30.0% |
| !! | TCAACAATTTTTGGATCCAA+AGG | + | Chr1:83907497-83907516 | None:intergenic | 30.0% |
| !!! | GTTTCTTTTCATTTTTTGCG+AGG | + | Chr1:83907150-83907169 | None:intergenic | 30.0% |
| AAATCTCCATCTTCAAAAGC+TGG | + | Chr1:83907035-83907054 | None:intergenic | 35.0% | |
| ACAATGAGTATGCTGATAAG+GGG | - | Chr1:83907339-83907358 | MsG0180004879.01.T01:CDS | 35.0% | |
| ATTGTCTGAGTCCAAATACT+TGG | - | Chr1:83907565-83907584 | MsG0180004879.01.T01:intron | 35.0% | |
| CAAGAAGATAGCAATAATGG+GGG | - | Chr1:83907385-83907404 | MsG0180004879.01.T01:CDS | 35.0% | |
| CCAAGAAGATAGCAATAATG+GGG | - | Chr1:83907384-83907403 | MsG0180004879.01.T01:CDS | 35.0% | |
| CTCCAAGAAGATAGCAATAA+TGG | - | Chr1:83907382-83907401 | MsG0180004879.01.T01:CDS | 35.0% | |
| CTTAATTAGGTATCATGGCA+AGG | + | Chr1:83907739-83907758 | None:intergenic | 35.0% | |
| GAAGAATGGAGAACACAAAA+AGG | - | Chr1:83906854-83906873 | MsG0180004879.01.T01:three_prime_UTR | 35.0% | |
| GAATGAAGATTCTTCACTGA+AGG | + | Chr1:83907868-83907887 | None:intergenic | 35.0% | |
| GCTTACATTGAGTGATATGA+AGG | + | Chr1:83906883-83906902 | None:intergenic | 35.0% | |
| GTGATTGATCTGCTAAATCA+TGG | - | Chr1:83906728-83906747 | MsG0180004879.01.T01:three_prime_UTR | 35.0% | |
| TAAATGATGCAAATCCACCA+AGG | + | Chr1:83907606-83907625 | None:intergenic | 35.0% | |
| TGAAGAGAATGAAGCCAAAT+TGG | - | Chr1:83907514-83907533 | MsG0180004879.01.T01:intron | 35.0% | |
| TTCTTTATGTTGCAGCCATT+TGG | - | Chr1:83907002-83907021 | MsG0180004879.01.T01:exon | 35.0% | |
| TTGTCTGAGTCCAAATACTT+GGG | - | Chr1:83907566-83907585 | MsG0180004879.01.T01:intron | 35.0% | |
| ! | AGTAGCATCAAAACTTGTTC+GGG | - | Chr1:83907442-83907461 | MsG0180004879.01.T01:intron | 35.0% |
| ! | ATCAAAACTTGTTCGGGAAT+TGG | - | Chr1:83907448-83907467 | MsG0180004879.01.T01:intron | 35.0% |
| ! | ATGGCATCAATAAAAGTGCA+CGG | - | Chr1:83906747-83906766 | MsG0180004879.01.T01:three_prime_UTR | 35.0% |
| ! | CGAATCAAAGACATTGGTTA+AGG | - | Chr1:83907918-83907937 | MsG0180004879.01.T01:CDS | 35.0% |
| ! | GATGGAGATTTAAAGCTCTT+TGG | - | Chr1:83907044-83907063 | MsG0180004879.01.T01:CDS | 35.0% |
| ! | TCAAAACTTGTTCGGGAATT+GGG | - | Chr1:83907449-83907468 | MsG0180004879.01.T01:intron | 35.0% |
| ! | TTTTTGCGAGGAGTGAAATT+AGG | + | Chr1:83907138-83907157 | None:intergenic | 35.0% |
| AAAGCTGGAACTTGACCAAA+TGG | + | Chr1:83907020-83907039 | None:intergenic | 40.0% | |
| ACGATCTCATGTTAGTGCTT+GGG | - | Chr1:83907676-83907695 | MsG0180004879.01.T01:intron | 40.0% | |
| CCCCATTATTGCTATCTTCT+TGG | + | Chr1:83907387-83907406 | None:intergenic | 40.0% | |
| TCAATGTGGTTGGAACAAGA+AGG | + | Chr1:83906965-83906984 | None:intergenic | 40.0% | |
| TTGGTTAAGGGATTTGAGTC+CGG | - | Chr1:83907931-83907950 | MsG0180004879.01.T01:CDS | 40.0% | |
| ! | AGATAGCAATAATGGGGGTA+TGG | - | Chr1:83907390-83907409 | MsG0180004879.01.T01:CDS | 40.0% |
| ! | ATGCTACTTGATCGAAGTGT+TGG | + | Chr1:83907430-83907449 | None:intergenic | 40.0% |
| ! | CAAAACTTGTTCGGGAATTG+GGG | - | Chr1:83907450-83907469 | MsG0180004879.01.T01:intron | 40.0% |
| ! | GGAGTCATTGCTTGTTAACT+TGG | + | Chr1:83907366-83907385 | None:intergenic | 40.0% |
| !! | CAAGTTCCAGCTTTTGAAGA+TGG | - | Chr1:83907026-83907045 | MsG0180004879.01.T01:CDS | 40.0% |
| AGAGTCACCTCCCAAGTATT+TGG | + | Chr1:83907579-83907598 | None:intergenic | 45.0% | |
| ATATCACTGCAAGACCAGCT+TGG | - | Chr1:83907705-83907724 | MsG0180004879.01.T01:CDS | 45.0% | |
| ATCTCATGTTAGTGCTTGGG+TGG | - | Chr1:83907679-83907698 | MsG0180004879.01.T01:intron | 45.0% | |
| CACGATCTCATGTTAGTGCT+TGG | - | Chr1:83907675-83907694 | MsG0180004879.01.T01:intron | 45.0% | |
| CTAATATTTGTGCGAGCGCT+TGG | - | Chr1:83907245-83907264 | MsG0180004879.01.T01:CDS | 45.0% | |
| TCTGAGTCCAAATACTTGGG+AGG | - | Chr1:83907569-83907588 | MsG0180004879.01.T01:intron | 45.0% | |
| AGGTGACTCTTTCACCTTGG+TGG | - | Chr1:83907589-83907608 | MsG0180004879.01.T01:intron | 50.0% | |
| GCAAGGACTTTAGACCAAGC+TGG | + | Chr1:83907722-83907741 | None:intergenic | 50.0% | |
| ! | AATGGGGGTATGGTCTGAAG+TGG | - | Chr1:83907400-83907419 | MsG0180004879.01.T01:CDS | 50.0% |
| AGTTGCAGTAACCCGCATGG+TGG | + | Chr1:83906790-83906809 | None:intergenic | 55.0% | |
| CAGAGTTGCAGTAACCCGCA+TGG | + | Chr1:83906793-83906812 | None:intergenic | 55.0% | |
| GGGAGGTGACTCTTTCACCT+TGG | - | Chr1:83907586-83907605 | MsG0180004879.01.T01:intron | 55.0% | |
| CCTACTCAACGGCCACCATG+CGG | - | Chr1:83906775-83906794 | MsG0180004879.01.T01:three_prime_UTR | 60.0% | |
| CGCATGGTGGCCGTTGAGTA+GGG | + | Chr1:83906777-83906796 | None:intergenic | 60.0% | |
| CTACTCAACGGCCACCATGC+GGG | - | Chr1:83906776-83906795 | MsG0180004879.01.T01:three_prime_UTR | 60.0% | |
| GCACGGAAGCCCCTACTCAA+CGG | - | Chr1:83906764-83906783 | MsG0180004879.01.T01:three_prime_UTR | 60.0% | |
| GCATGGTGGCCGTTGAGTAG+GGG | + | Chr1:83906776-83906795 | None:intergenic | 60.0% | |
| CCGCATGGTGGCCGTTGAGT+AGG | + | Chr1:83906778-83906797 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr1 | gene | 83906674 | 83908092 | 83906674 | ID=MsG0180004879.01;Name=MsG0180004879.01 |
| Chr1 | mRNA | 83906674 | 83908092 | 83906674 | ID=MsG0180004879.01.T01;Parent=MsG0180004879.01;Name=MsG0180004879.01.T01;_AED=0.47;_eAED=0.47;_QI=73|1|1|1|1|1|3|335|214 |
| Chr1 | exon | 83906674 | 83907454 | 83906674 | ID=MsG0180004879.01.T01:exon:9079;Parent=MsG0180004879.01.T01 |
| Chr1 | exon | 83907701 | 83907749 | 83907701 | ID=MsG0180004879.01.T01:exon:9078;Parent=MsG0180004879.01.T01 |
| Chr1 | exon | 83907870 | 83908092 | 83907870 | ID=MsG0180004879.01.T01:exon:9077;Parent=MsG0180004879.01.T01 |
| Chr1 | five_prime_UTR | 83908020 | 83908092 | 83908020 | ID=MsG0180004879.01.T01:five_prime_utr;Parent=MsG0180004879.01.T01 |
| Chr1 | CDS | 83907870 | 83908019 | 83907870 | ID=MsG0180004879.01.T01:cds;Parent=MsG0180004879.01.T01 |
| Chr1 | CDS | 83907701 | 83907749 | 83907701 | ID=MsG0180004879.01.T01:cds;Parent=MsG0180004879.01.T01 |
| Chr1 | CDS | 83907009 | 83907454 | 83907009 | ID=MsG0180004879.01.T01:cds;Parent=MsG0180004879.01.T01 |
| Chr1 | three_prime_UTR | 83906674 | 83907008 | 83906674 | ID=MsG0180004879.01.T01:three_prime_utr;Parent=MsG0180004879.01.T01 |
| Gene Sequence |
| Protein sequence |
