AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180005221.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180005221.01.T01 MTR_8g465330 53.512 299 62 6 150 413 67 323 1.73e-76 246
MsG0180005221.01.T01 MTR_7g109380 54.894 235 96 4 182 409 1 232 2.89e-72 232
MsG0180005221.01.T01 MTR_1g095450 90.826 109 5 1 471 574 3 111 7.45e-61 206
MsG0180005221.01.T01 MTR_3g463860 52.083 192 62 3 247 408 1 192 2.82e-56 188
MsG0180005221.01.T01 MTR_5g032220 67.647 136 42 1 223 356 328 463 9.05e-52 185
MsG0180005221.01.T01 MTR_5g032220 62.791 86 27 2 89 173 22 103 9.18e-12 68.2
MsG0180005221.01.T01 MTR_7g062270 65.812 117 40 0 211 327 265 381 6.34e-47 169
MsG0180005221.01.T01 MTR_8g063670 54.348 138 39 1 195 332 7 120 1.19e-39 141
MsG0180005221.01.T01 MTR_3g463560 53.509 114 48 2 181 291 57 168 1.33e-31 122
MsG0180005221.01.T01 MTR_3g104445 68.478 92 27 1 267 356 1 92 1.99e-31 118
MsG0180005221.01.T01 MTR_3g116710 71.569 102 26 1 63 161 1 102 3.71e-31 122
MsG0180005221.01.T01 MTR_1g111720 56.800 125 26 2 295 391 1 125 4.47e-30 115
MsG0180005221.01.T01 MTR_0008s0460 59.783 92 36 1 210 301 63 153 1.53e-29 115
MsG0180005221.01.T01 MTR_1g099140 64.286 112 35 2 63 173 8 115 3.61e-28 119
MsG0180005221.01.T01 MTR_1g095440 88.525 61 0 1 1 61 1 54 1.26e-27 106
MsG0180005221.01.T01 MTR_5g073000 59.794 97 32 1 169 265 499 588 8.67e-26 112
MsG0180005221.01.T01 MTR_5g073000 51.685 89 37 2 61 149 17 99 2.77e-15 79.3
MsG0180005221.01.T01 MTR_1g051465 35.610 205 122 6 159 356 64 265 9.27e-25 106
MsG0180005221.01.T01 MTR_7g006230 36.098 205 121 6 159 356 205 406 3.38e-24 106
MsG0180005221.01.T01 MTR_5g046145 62.500 96 35 1 67 161 48 143 1.01e-23 103
MsG0180005221.01.T01 MTR_2g090505 62.393 117 39 2 58 173 3 115 3.82e-23 100
MsG0180005221.01.T01 MTR_5g062340 34.146 205 125 6 159 356 138 339 2.41e-22 100
MsG0180005221.01.T01 MTR_1g016820 36.316 190 111 6 174 356 88 274 1.74e-21 97.1
MsG0180005221.01.T01 MTR_6g035400 37.654 162 93 5 201 356 203 362 4.45e-21 96.7
MsG0180005221.01.T01 MTR_4g048540 34.259 216 130 8 149 356 185 396 6.28e-21 95.9
MsG0180005221.01.T01 MTR_7g029645 33.659 205 126 6 159 356 204 405 2.28e-20 95.1
MsG0180005221.01.T01 MTR_8g020437 38.037 163 87 7 202 356 3 159 8.92e-20 89.4
MsG0180005221.01.T01 MTR_8g463970 40.288 139 60 5 207 332 5 133 1.09e-19 85.9
MsG0180005221.01.T01 MTR_3g044770 35.484 186 108 6 162 341 113 292 1.73e-19 89.7
MsG0180005221.01.T01 MTR_1g035110 33.171 205 127 6 159 356 113 314 1.83e-19 91.3
MsG0180005221.01.T01 MTR_3g437080 37.419 155 80 6 212 356 4 151 2.28e-19 86.3
MsG0180005221.01.T01 MTR_8g017510 36.667 150 87 5 213 356 1 148 2.38e-19 87.8
MsG0180005221.01.T01 MTR_2g096070 35.176 199 119 6 165 356 531 726 3.08e-19 92.4
MsG0180005221.01.T01 MTR_8g446690 39.416 137 77 4 223 355 15 149 3.91e-19 88.2
MsG0180005221.01.T01 MTR_4g132765 39.860 143 78 5 220 356 801 941 1.01e-18 90.9
MsG0180005221.01.T01 MTR_3g014480 29.688 256 158 8 158 395 62 313 1.11e-18 88.2
MsG0180005221.01.T01 MTR_2g026620 34.054 185 104 5 159 333 46 222 1.03e-17 84.3
MsG0180005221.01.T01 MTR_4g050580 40.945 127 62 4 213 338 1 115 1.94e-17 79.0
MsG0180005221.01.T01 MTR_2g034775 37.313 134 70 4 212 337 92 219 2.62e-17 81.6
MsG0180005221.01.T01 MTR_6g084230 36.000 150 88 5 213 356 1 148 3.27e-17 83.2
MsG0180005221.01.T01 MTR_3g087410 31.959 194 122 5 157 341 22 214 4.40e-17 82.4
MsG0180005221.01.T01 MTR_8g038230 38.346 133 73 2 243 375 153 276 5.97e-17 82.0
MsG0180005221.01.T01 MTR_7g055617 35.404 161 99 3 159 316 119 277 6.30e-17 82.0
MsG0180005221.01.T01 MTR_5g018790 36.806 144 82 5 220 356 483 624 1.06e-16 84.3
MsG0180005221.01.T01 MTR_3g032550 27.509 269 158 9 151 395 134 389 5.19e-16 80.9
MsG0180005221.01.T01 MTR_4g113170 36.129 155 82 6 212 356 487 634 7.42e-16 81.3
MsG0180005221.01.T01 MTR_2g436740 35.000 140 84 5 218 352 71 208 2.25e-15 75.9
MsG0180005221.01.T01 MTR_4g015450 38.462 130 66 4 212 333 36 159 3.08e-15 79.0
MsG0180005221.01.T01 MTR_5g039360 36.424 151 85 6 213 356 3 149 2.40e-14 71.6
MsG0180005221.01.T01 MTR_8g040220 29.688 192 109 6 212 392 4 180 2.91e-14 72.8
MsG0180005221.01.T01 MTR_1g103800 34.356 163 98 4 159 316 195 353 5.09e-14 74.3
MsG0180005221.01.T01 MTR_2g461120 32.468 154 84 4 213 355 5 149 5.31e-14 72.0
MsG0180005221.01.T01 MTR_2g461930 33.163 196 119 7 150 338 53 243 5.47e-14 73.6
MsG0180005221.01.T01 MTR_1g081010 33.540 161 99 3 159 316 188 343 7.17e-14 73.6
MsG0180005221.01.T01 MTR_1g015680 33.962 159 100 3 159 314 289 445 2.84e-13 72.8
MsG0180005221.01.T01 MTR_5g006100 39.831 118 66 3 220 333 585 701 2.96e-13 73.2
MsG0180005221.01.T01 MTR_3g072200 38.017 121 67 4 212 327 429 546 3.50e-13 72.8
MsG0180005221.01.T01 MTR_5g028280 37.500 104 62 2 212 313 117 219 8.04e-13 68.6
MsG0180005221.01.T01 MTR_6g059570 32.787 183 101 7 147 317 30 202 1.23e-12 67.8
MsG0180005221.01.T01 MTR_7g033500 34.395 157 94 4 159 310 134 286 1.32e-12 69.3
MsG0180005221.01.T01 MTR_8g468040 31.633 196 113 8 168 356 287 468 1.87e-12 70.5
MsG0180005221.01.T01 MTR_1g101180 23.944 284 171 9 130 395 23 279 1.94e-12 68.9
MsG0180005221.01.T01 MTR_8g463980 30.729 192 108 7 169 356 238 408 4.94e-12 68.9
MsG0180005221.01.T01 MTR_5g017770 36.000 125 66 4 212 328 4 122 5.02e-12 63.9
MsG0180005221.01.T01 MTR_6g004370 35.252 139 83 5 187 321 21 156 3.44e-11 62.0
MsG0180005221.01.T01 MTR_6g059580 38.182 110 64 2 175 281 2 110 4.91e-11 60.8
MsG0180005221.01.T01 MTR_6g059560 36.585 123 72 2 140 256 36 158 8.98e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 177 sgRNAs with CRISPR-Local

Find 433 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAGGTGGTAACAGATTATT+TGG 0.229587 1:-88778560 None:intergenic
ATGCCCCTCCACTTCTCTTT+TGG 0.238073 1:-88776359 None:intergenic
GCGGCTCCAATATCGGAAAA+TGG 0.240046 1:+88781322 MsG0180005221.01.T01:CDS
CTCTATCCTTTAGCGGTATT+GGG 0.260697 1:+88778664 MsG0180005221.01.T01:CDS
TCGAAAATTGAAATTTCTTT+AGG 0.266798 1:+88777686 MsG0180005221.01.T01:CDS
GGCAATGGTGGGTCTATTTC+CGG 0.269331 1:+88781238 MsG0180005221.01.T01:CDS
GTCATCCGTCGCCGGATCAT+TGG 0.270158 1:-88781365 None:intergenic
GCTCTATCCTTTAGCGGTAT+TGG 0.271722 1:+88778663 MsG0180005221.01.T01:CDS
CAGGTTGCGGGGCCAATTCT+TGG 0.272092 1:+88776463 MsG0180005221.01.T01:CDS
TGAACCTCCTATTGTGTTGC+AGG 0.282355 1:+88777598 MsG0180005221.01.T01:CDS
ATGGATGACCATGCTGGATA+TGG 0.291832 1:+88778704 MsG0180005221.01.T01:CDS
TCAAATCCACTGCCATAAAA+TGG 0.306106 1:-88778866 None:intergenic
GGAATGCACCACCGTATAAA+TGG 0.306575 1:+88778685 MsG0180005221.01.T01:CDS
ATCTCAGGTGGATCATCATT+TGG 0.307069 1:-88777575 None:intergenic
ATGTGGACTTTAACCAATAC+TGG 0.316477 1:-88778411 None:intergenic
CGATATTGGAGCCGCAGCTT+TGG 0.332174 1:-88781314 None:intergenic
CAAGAATGGAGAAGCAGATT+TGG 0.336001 1:+88781846 MsG0180005221.01.T01:CDS
TCTCAGGTGGATCATCATTT+GGG 0.346767 1:-88777574 None:intergenic
CAAAGCTGCGGCTCCAATAT+CGG 0.360232 1:+88781315 MsG0180005221.01.T01:CDS
AAAACTTATTTCCCTCTTTG+TGG 0.365341 1:+88778792 MsG0180005221.01.T01:CDS
GAGCTTTACTTGATAATTGA+AGG 0.367096 1:+88776490 MsG0180005221.01.T01:CDS
CGTCAAAACTCTCAGGTTGC+GGG 0.368764 1:+88776451 MsG0180005221.01.T01:CDS
CATGCATCCAAAGTAGGATT+TGG 0.372907 1:-88778446 None:intergenic
GATATTGGAGCCGCAGCTTT+GGG 0.373212 1:-88781313 None:intergenic
AGAGGATGATTAATGATAAT+AGG 0.384242 1:+88778619 MsG0180005221.01.T01:CDS
CGGCTCCAATATCGGAAAAT+GGG 0.387560 1:+88781323 MsG0180005221.01.T01:CDS
TCAATACAAACAACAACATT+TGG 0.389698 1:-88777758 None:intergenic
AGCATGGTCATCCATTTATA+CGG 0.407085 1:-88778696 None:intergenic
TAACGGGCTACGTGTGGAAA+TGG 0.408628 1:+88781461 MsG0180005221.01.T01:CDS
TGACGGATTGCATATGCATA+TGG 0.412391 1:-88776433 None:intergenic
AAAAGAACCTGCAACACAAT+AGG 0.418985 1:-88777605 None:intergenic
TAAAGCTCAATGCCAAGAAT+TGG 0.419425 1:-88776475 None:intergenic
AGTAGGATTTGGTCTTTGTA+TGG 0.423567 1:-88778435 None:intergenic
CGGTTGTTGTGTTGTCCATT+GGG 0.431989 1:+88778757 MsG0180005221.01.T01:CDS
GAAAATGGGGTGGGAGGCCA+TGG 0.434127 1:+88781337 MsG0180005221.01.T01:CDS
GGTTCACAGACAAAATCAAC+AGG 0.434680 1:+88778315 MsG0180005221.01.T01:CDS
TCATCCGTCGCCGGATCATT+GGG 0.443613 1:-88781364 None:intergenic
CCTCCATCACCACTGGCGAC+GGG 0.445644 1:-88781273 None:intergenic
ACGGTTGTTGTGTTGTCCAT+TGG 0.449576 1:+88778756 MsG0180005221.01.T01:CDS
ACAACATTTGGAGGTACAAC+AGG 0.456322 1:-88777746 None:intergenic
CCATGGCACACCCAATGATC+CGG 0.457452 1:+88781354 MsG0180005221.01.T01:CDS
TCCTCCATCACCACTGGCGA+CGG 0.457816 1:-88781274 None:intergenic
TGATGGAGGAGTGGCACAAT+AGG 0.464742 1:+88781287 MsG0180005221.01.T01:CDS
CGACGGATGACGGCGGAGTA+AGG 0.464895 1:+88781377 MsG0180005221.01.T01:CDS
TATCGATCGGGTGATGTGTC+TGG 0.465051 1:+88778827 MsG0180005221.01.T01:CDS
CACCTTTACAAAGAGCTTGT+CGG 0.466023 1:+88778576 MsG0180005221.01.T01:CDS
GTCCACCTCCATGTATCGAT+CGG 0.467311 1:+88778814 MsG0180005221.01.T01:CDS
TGGTCCTGGTCCTGGTGTGA+AGG 0.468231 1:+88779086 MsG0180005221.01.T01:CDS
TTGGCTACATCAAGATCAAA+AGG 0.468273 1:-88776340 None:intergenic
ACAAAGACCAAATCCTACTT+TGG 0.471114 1:+88778439 MsG0180005221.01.T01:CDS
GAGAGGGTTGGTCCTGGTCC+TGG 0.472801 1:+88779078 MsG0180005221.01.T01:CDS
TACCTGGTGATGGCCATTGT+GGG 0.476098 1:+88778493 MsG0180005221.01.T01:CDS
GCATCCACTGGAGGAAGTGC+TGG 0.476671 1:-88781205 None:intergenic
CCCGATGAGAGGGTTGGTCC+TGG 0.477166 1:+88779072 MsG0180005221.01.T01:CDS
TGATTGACTCTAGACAATCC+TGG 0.479542 1:-88781825 None:intergenic
CGCGGAATGATTTGTTGGAG+TGG 0.479811 1:+88777819 MsG0180005221.01.T01:CDS
TGCATTCCCAATACCGCTAA+AGG 0.483277 1:-88778670 None:intergenic
TGCAACGCGGAATGATTTGT+TGG 0.484927 1:+88777814 MsG0180005221.01.T01:CDS
CCGTCAAAACTCTCAGGTTG+CGG 0.485670 1:+88776450 MsG0180005221.01.T01:CDS
TTTGGTCTTTGTATGGTATG+TGG 0.486576 1:-88778428 None:intergenic
GCGGCGGATCAAGAGGTGAT+AGG 0.487411 1:+88779012 MsG0180005221.01.T01:CDS
AGCTTGGTGATGGCAATGGC+TGG 0.489751 1:-88781120 None:intergenic
TATAATTAATGAGCTAAGTC+GGG 0.492092 1:+88778990 MsG0180005221.01.T01:CDS
GTTGTGTTGTCCATTGGGAA+AGG 0.496192 1:+88778762 MsG0180005221.01.T01:CDS
ATGGCAGTGGATTTGAAGGA+TGG 0.504122 1:+88778873 MsG0180005221.01.T01:CDS
ACAATAGGAGGTTCAATCTC+AGG 0.507101 1:-88777590 None:intergenic
TAAAATCATGCATCCAAAGT+AGG 0.507614 1:-88778452 None:intergenic
TGCAATCCGTCAAAACTCTC+AGG 0.508010 1:+88776444 MsG0180005221.01.T01:CDS
CTCCATCACCACTGGCGACG+GGG 0.508711 1:-88781272 None:intergenic
AAGGAGTGTCAGTCCTTTGT+CGG 0.509813 1:+88781424 MsG0180005221.01.T01:CDS
CCGGATCATTGGGTGTGCCA+TGG 0.510588 1:-88781354 None:intergenic
CATAGCATAATATATCTCAT+TGG 0.510713 1:-88781929 None:intergenic
AATGATCCGGCGACGGATGA+CGG 0.511835 1:+88781367 MsG0180005221.01.T01:CDS
CACATCACCCGATCGATACA+TGG 0.512134 1:-88778822 None:intergenic
GCGGAATGATTTGTTGGAGT+GGG 0.513974 1:+88777820 MsG0180005221.01.T01:CDS
CCAGGACCAACCCTCTCATC+GGG 0.514231 1:-88779072 None:intergenic
GGTGTCATTAACCAACTAAC+GGG 0.514807 1:+88781445 MsG0180005221.01.T01:CDS
ATAATATATCTCATTGGCTA+TGG 0.517744 1:-88781923 None:intergenic
TCCATCACCACTGGCGACGG+GGG 0.521238 1:-88781271 None:intergenic
TCCACACGTAGCCCGTTAGT+TGG 0.521998 1:-88781456 None:intergenic
TCCACCTCCATGTATCGATC+GGG 0.523599 1:+88778815 MsG0180005221.01.T01:CDS
TTATAATTAATGAGCTAAGT+CGG 0.524264 1:+88778989 MsG0180005221.01.T01:CDS
TTGTGGGTTTCGAGCAGTTG+CGG 0.524895 1:+88778509 MsG0180005221.01.T01:CDS
TTGTGTTGTCCATTGGGAAA+GGG 0.526383 1:+88778763 MsG0180005221.01.T01:CDS
ACTCCGCCGTCATCCGTCGC+CGG 0.530133 1:-88781373 None:intergenic
CCACTACCTTCTGCATCCAC+TGG 0.530575 1:-88781217 None:intergenic
TGTCTAGAGTCAATCAAGAA+TGG 0.532295 1:+88781832 MsG0180005221.01.T01:CDS
GCCACCAGCACTTCCTCCAG+TGG 0.534678 1:+88781201 MsG0180005221.01.T01:CDS
TCCAATATCGGAAAATGGGG+TGG 0.535404 1:+88781327 MsG0180005221.01.T01:CDS
ACCAGGACCAACCCTCTCAT+CGG 0.539208 1:-88779073 None:intergenic
GATTGACTCTAGACAATCCT+GGG 0.539227 1:-88781824 None:intergenic
GTATAAATGGATGACCATGC+TGG 0.546444 1:+88778698 MsG0180005221.01.T01:CDS
CCATTGCCATCACCAAGCTC+TGG 0.546468 1:+88781124 MsG0180005221.01.T01:CDS
TGCCACTCCTCCATCACCAC+TGG 0.547171 1:-88781280 None:intergenic
TTTCGATCGCCCTTTCCCAA+TGG 0.550276 1:-88778772 None:intergenic
GGAAGTGCTGGTGGCAGAAG+AGG 0.551309 1:-88781193 None:intergenic
ATACAAACAACAACATTTGG+AGG 0.555777 1:-88777755 None:intergenic
CACCGACAAGCTCTTTGTAA+AGG 0.555872 1:-88778578 None:intergenic
AACCCACAATGGCCATCACC+AGG 0.561729 1:-88778495 None:intergenic
GCAGAAGGTAGTGGCAATGG+TGG 0.564571 1:+88781226 MsG0180005221.01.T01:CDS
CACAGTGAGGGACGAAGTGA+AGG 0.565435 1:+88781405 MsG0180005221.01.T01:CDS
CGCCAGTGGTGATGGAGGAG+TGG 0.565858 1:+88781278 MsG0180005221.01.T01:CDS
AAGTCGGGCGGCGGATCAAG+AGG 0.568891 1:+88779005 MsG0180005221.01.T01:CDS
TCCTGGTGTGAAGGTTGAAG+TGG 0.570257 1:+88779095 MsG0180005221.01.T01:CDS
CCCGTCGCCAGTGGTGATGG+AGG 0.572332 1:+88781273 MsG0180005221.01.T01:CDS
TGATAATAGGCGGTATAAAG+AGG 0.573576 1:+88778632 MsG0180005221.01.T01:CDS
CGGTGTCATTAACCAACTAA+CGG 0.576040 1:+88781444 MsG0180005221.01.T01:CDS
GGTTGGAACTCGTGAACTGA+TGG 0.578796 1:-88781169 None:intergenic
AGTAAGGTGGTGCACAGTGA+GGG 0.580947 1:+88781393 MsG0180005221.01.T01:CDS
TGGATGACCATGCTGGATAT+GGG 0.581703 1:+88778705 MsG0180005221.01.T01:CDS
GATTTGGTGAACTTAGAAGC+AGG 0.581877 1:+88781862 MsG0180005221.01.T01:CDS
ACCAACTAACGGGCTACGTG+TGG 0.581926 1:+88781455 MsG0180005221.01.T01:CDS
TGATGTAGCCAAAAGAGAAG+TGG 0.582247 1:+88776351 MsG0180005221.01.T01:CDS
AGAACCTGCAACACAATAGG+AGG 0.586925 1:-88777602 None:intergenic
CTCCCAGGAACAACAGACAC+AGG 0.590700 1:+88778293 MsG0180005221.01.T01:intron
CCAGTGGATGCAGAAGGTAG+TGG 0.590987 1:+88781217 MsG0180005221.01.T01:CDS
TCATCACCAGAGCTTGGTGA+TGG 0.592564 1:-88781130 None:intergenic
AAATCTTGATCCCGATGAGA+GGG 0.593490 1:+88779062 MsG0180005221.01.T01:CDS
TCAAGAGGTGATAGGAGATG+AGG 0.594083 1:+88779020 MsG0180005221.01.T01:CDS
TTTAGGCGATGCGAAAGTAG+AGG 0.594410 1:+88777703 MsG0180005221.01.T01:CDS
GTACCTGGTGATGGCCATTG+TGG 0.595161 1:+88778492 MsG0180005221.01.T01:CDS
TCAACCTTCACACCAGGACC+AGG 0.595948 1:-88779090 None:intergenic
TAATGAGCTAAGTCGGGCGG+CGG 0.596150 1:+88778996 MsG0180005221.01.T01:CDS
CCAATATCGGAAAATGGGGT+GGG 0.596208 1:+88781328 MsG0180005221.01.T01:CDS
CCAGAGCTTGGTGATGGCAA+TGG 0.596900 1:-88781124 None:intergenic
TCCACTTCAACCTTCACACC+AGG 0.597773 1:-88779096 None:intergenic
CGACAAGCTCTTTGTAAAGG+TGG 0.597941 1:-88778575 None:intergenic
CACACCCAATGATCCGGCGA+CGG 0.598298 1:+88781360 MsG0180005221.01.T01:CDS
TCAAACGCTCTATCCTTTAG+CGG 0.598359 1:+88778657 MsG0180005221.01.T01:CDS
GGTACAACAGGAGGAACAAG+AGG 0.601105 1:-88777734 None:intergenic
TAGAAAATTCTCGCTATCAG+AGG 0.603667 1:+88778601 MsG0180005221.01.T01:CDS
AAAATCTTGATCCCGATGAG+AGG 0.604651 1:+88779061 MsG0180005221.01.T01:CDS
ATATCGGAAAATGGGGTGGG+AGG 0.604798 1:+88781331 MsG0180005221.01.T01:CDS
ACCCGATCGATACATGGAGG+TGG 0.605564 1:-88778816 None:intergenic
TCGTGATCATCACCAGAGCT+TGG 0.607923 1:-88781136 None:intergenic
TCCACTGGAGGAAGTGCTGG+TGG 0.612234 1:-88781202 None:intergenic
CTTGATCCCGATGAGAGGGT+TGG 0.614387 1:+88779066 MsG0180005221.01.T01:CDS
CATGGAGGTGGACCACAAAG+AGG 0.618493 1:-88778804 None:intergenic
TGTAGCCAAAAGAGAAGTGG+AGG 0.620765 1:+88776354 MsG0180005221.01.T01:CDS
TTGGTTAATGACACCGACAA+AGG 0.623235 1:-88781437 None:intergenic
ACAACAGGAGGAACAAGAGG+AGG 0.625816 1:-88777731 None:intergenic
GAGTAAGGTGGTGCACAGTG+AGG 0.634640 1:+88781392 MsG0180005221.01.T01:CDS
CTACCTTCTGCATCCACTGG+AGG 0.635103 1:-88781214 None:intergenic
CTTCCTCCAGTGGATGCAGA+AGG 0.638589 1:+88781211 MsG0180005221.01.T01:CDS
GTCAAAACTCTCAGGTTGCG+GGG 0.638888 1:+88776452 MsG0180005221.01.T01:CDS
ATGGAGGTGGACCACAAAGA+GGG 0.640911 1:-88778803 None:intergenic
GTTGAGGATGTACCTGGTGA+TGG 0.641159 1:+88778483 MsG0180005221.01.T01:CDS
CAGAAGGTAGTGGCAATGGT+GGG 0.642384 1:+88781227 MsG0180005221.01.T01:CDS
CGGATGACGGCGGAGTAAGG+TGG 0.643445 1:+88781380 MsG0180005221.01.T01:CDS
CGCGCAGAAATTCAACCACA+CGG 0.643581 1:+88778737 MsG0180005221.01.T01:CDS
TGATAGATATGTCAGTCGGA+TGG 0.644260 1:+88778962 MsG0180005221.01.T01:intron
GAAAAGGTTGAGGATGTACC+TGG 0.646567 1:+88778477 MsG0180005221.01.T01:CDS
GGCTCCAATATCGGAAAATG+GGG 0.648028 1:+88781324 MsG0180005221.01.T01:CDS
GATGCAGAAGGTAGTGGCAA+TGG 0.649248 1:+88781223 MsG0180005221.01.T01:CDS
ATAGGAGGTTCAATCTCAGG+TGG 0.649721 1:-88777587 None:intergenic
CTCAGGTGGATCATCATTTG+GGG 0.653414 1:-88777573 None:intergenic
GAGGAAACCCATATCCAGCA+TGG 0.653709 1:-88778712 None:intergenic
AGTGCTGGTGGCAGAAGAGG+TGG 0.660010 1:-88781190 None:intergenic
ACATTTGGAGGTACAACAGG+AGG 0.660769 1:-88777743 None:intergenic
GGATAAGTAGAAAGAGTGCA+CGG 0.660978 1:+88778337 MsG0180005221.01.T01:CDS
CATCAATAGTCAAGTTACGT+AGG 0.664624 1:-88778533 None:intergenic
CAACTGCTCGAAACCCACAA+TGG 0.669920 1:-88778506 None:intergenic
GTAGCCAAAAGAGAAGTGGA+GGG 0.672598 1:+88776355 MsG0180005221.01.T01:CDS
CTGGTGGCAGAAGAGGTGGT+TGG 0.678794 1:-88781186 None:intergenic
TCCCAGGAACAACAGACACA+GGG 0.679906 1:+88778294 MsG0180005221.01.T01:intron
TGGAACTCGTGAACTGATGG+AGG 0.684922 1:-88781166 None:intergenic
GATCCGGCGACGGATGACGG+CGG 0.685048 1:+88781370 MsG0180005221.01.T01:CDS
ATGGTCATCCATTTATACGG+TGG 0.692047 1:-88778693 None:intergenic
CAATAGGTCTCCCAAAGCTG+CGG 0.699418 1:+88781303 MsG0180005221.01.T01:CDS
GGTTGAATTTCTGCGCGATG+AGG 0.699486 1:-88778731 None:intergenic
TAGCCAAAAGAGAAGTGGAG+GGG 0.705016 1:+88776356 MsG0180005221.01.T01:CDS
AATTAATGAGCTAAGTCGGG+CGG 0.707034 1:+88778993 MsG0180005221.01.T01:CDS
GGATGATTAATGATAATAGG+CGG 0.713535 1:+88778622 MsG0180005221.01.T01:CDS
TGGACAACACAACAACCGTG+TGG 0.747323 1:-88778752 None:intergenic
ATCACCCGATCGATACATGG+AGG 0.749444 1:-88778819 None:intergenic
GTTCACAGACAAAATCAACA+GGG 0.776817 1:+88778316 MsG0180005221.01.T01:CDS
CTACACAAAAGTTTGCAACG+CGG 0.785134 1:+88777801 MsG0180005221.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAGTATAATAAATTAGAT+TGG - Chr1:88779714-88779733 None:intergenic 10.0%
!! TAACTTAAATGTATATAATT+AGG + Chr1:88779147-88779166 MsG0180005221.01.T01:intron 10.0%
!! TCATTTATAAAACATTTATA+AGG - Chr1:88776792-88776811 None:intergenic 10.0%
!! TTAGTATAATAAATTAGATT+GGG - Chr1:88779713-88779732 None:intergenic 10.0%
!!! AATTATATACATTTAAGTTA+TGG - Chr1:88779147-88779166 None:intergenic 10.0%
!!! GTATTTTTGAAAAAAAAAAT+AGG + Chr1:88779409-88779428 MsG0180005221.01.T01:intron 10.0%
!!! TTTTAGAAAATTTAAAGAAA+GGG - Chr1:88779885-88779904 None:intergenic 10.0%
!!! TTTTTAGAAAATTTAAAGAA+AGG - Chr1:88779886-88779905 None:intergenic 10.0%
!!! AGTAATTCTTAGTTTTTTTT+TGG + Chr1:88780224-88780243 MsG0180005221.01.T01:intron 15.0%
!!! TATTTTCAAAGAATATTTGA+AGG - Chr1:88776763-88776782 None:intergenic 15.0%
!!! TGATATAAATTCAACTTTTT+TGG + Chr1:88779182-88779201 MsG0180005221.01.T01:intron 15.0%
!!! TTATGTTATTGTTATTGTTA+TGG - Chr1:88780813-88780832 None:intergenic 15.0%
!!! TTTTTTTTCAAAAATACTCT+CGG - Chr1:88779406-88779425 None:intergenic 15.0%
!! AAAAAAAAGATAAAAAGCTC+AGG + Chr1:88779857-88779876 MsG0180005221.01.T01:intron 20.0%
!! AAAAAAAGATAAAAAGCTCA+GGG + Chr1:88779858-88779877 MsG0180005221.01.T01:intron 20.0%
!! ATGATTCAGAAATCATAATT+CGG + Chr1:88777070-88777089 MsG0180005221.01.T01:intron 20.0%
!! ATTACAAAGGTAAAAAATAG+AGG - Chr1:88779612-88779631 None:intergenic 20.0%
!! ATTATACTAATACTTCATTG+TGG + Chr1:88779723-88779742 MsG0180005221.01.T01:intron 20.0%
!! ATTTATGCTTAGTAGTTAAT+AGG + Chr1:88781640-88781659 MsG0180005221.01.T01:intron 20.0%
!! TAAAATAGACCAATTGTATA+CGG - Chr1:88779763-88779782 None:intergenic 20.0%
!! TCGAAAATTGAAATTTCTTT+AGG + Chr1:88777686-88777705 MsG0180005221.01.T01:CDS 20.0%
!! TTACCTTAACAATATACAAA+TGG - Chr1:88780543-88780562 None:intergenic 20.0%
!! TTAGTATTTCCCTTTATTAT+TGG - Chr1:88781571-88781590 None:intergenic 20.0%
!! TTATAATTAATGAGCTAAGT+CGG + Chr1:88778989-88779008 MsG0180005221.01.T01:CDS 20.0%
!!! AAAGAAATTTCAATTTTCGA+TGG - Chr1:88777686-88777705 None:intergenic 20.0%
!!! ACAATTGGTCTATTTTAAAA+GGG + Chr1:88779766-88779785 MsG0180005221.01.T01:intron 20.0%
!!! ACAATTTGGATTTTATAATC+CGG - Chr1:88778004-88778023 None:intergenic 20.0%
!!! AGTTTTTTTTTACACATTGT+AGG + Chr1:88778083-88778102 MsG0180005221.01.T01:intron 20.0%
!!! ATAGTTGTGTCTAAAATTTA+AGG - Chr1:88781622-88781641 None:intergenic 20.0%
!!! ATTATCGTTTTTTTTTCTTC+CGG + Chr1:88777156-88777175 MsG0180005221.01.T01:intron 20.0%
!!! GTAAAAAAAAACTGTCATTT+TGG - Chr1:88778076-88778095 None:intergenic 20.0%
!!! TACAATTGGTCTATTTTAAA+AGG + Chr1:88779765-88779784 MsG0180005221.01.T01:intron 20.0%
!!! TTGATTTTGTTCATGTAAAA+GGG - Chr1:88776718-88776737 None:intergenic 20.0%
!!! TTGTTACTCTTTTTCTTTTA+TGG - Chr1:88776405-88776424 None:intergenic 20.0%
!!! TTTGATTTTGTTCATGTAAA+AGG - Chr1:88776719-88776738 None:intergenic 20.0%
!!! TTTGTTTCCATATATTTTTC+AGG + Chr1:88781094-88781113 MsG0180005221.01.T01:intron 20.0%
! AAAATACTCTCGGATTAATT+CGG - Chr1:88779396-88779415 None:intergenic 25.0%
! AGAGGATGATTAATGATAAT+AGG + Chr1:88778619-88778638 MsG0180005221.01.T01:CDS 25.0%
! CATAGCATAATATATCTCAT+TGG - Chr1:88781932-88781951 None:intergenic 25.0%
! CATGAACTGATAAATGATAA+TGG + Chr1:88780476-88780495 MsG0180005221.01.T01:intron 25.0%
! CTACCATTTGTATATTGTTA+AGG + Chr1:88780537-88780556 MsG0180005221.01.T01:intron 25.0%
! GACAATACATAATATATGCA+AGG - Chr1:88780275-88780294 None:intergenic 25.0%
! GCAGTTCAGATTATATAATT+CGG + Chr1:88779348-88779367 MsG0180005221.01.T01:intron 25.0%
! GCATTATGGAAAATAAAATC+CGG + Chr1:88777438-88777457 MsG0180005221.01.T01:intron 25.0%
! TAAATCTCAAATATCACTTG+TGG + Chr1:88776580-88776599 MsG0180005221.01.T01:intron 25.0%
! TATAATTAATGAGCTAAGTC+GGG + Chr1:88778990-88779009 MsG0180005221.01.T01:CDS 25.0%
! TATAGTTGTATTCGAGAATA+TGG + Chr1:88777097-88777116 MsG0180005221.01.T01:intron 25.0%
! TATTCTCGAATACAACTATA+TGG - Chr1:88777097-88777116 None:intergenic 25.0%
! TCAATACAAACAACAACATT+TGG - Chr1:88777761-88777780 None:intergenic 25.0%
! TGATGTTGTCCAATAATAAA+GGG + Chr1:88781559-88781578 MsG0180005221.01.T01:intron 25.0%
! TGCATATGAAAGAACAATTT+CGG + Chr1:88778139-88778158 MsG0180005221.01.T01:intron 25.0%
! TGCTTTCAATTCTTGAATAT+TGG + Chr1:88776530-88776549 MsG0180005221.01.T01:intron 25.0%
! TTATATAATTCGGACATGTT+CGG + Chr1:88779358-88779377 MsG0180005221.01.T01:intron 25.0%
! TTGATGTTGTCCAATAATAA+AGG + Chr1:88781558-88781577 MsG0180005221.01.T01:intron 25.0%
!! AAAAGTAATTCTTGTTTGAG+AGG + Chr1:88780408-88780427 MsG0180005221.01.T01:intron 25.0%
!! AAAGTAATTCTTGTTTGAGA+GGG + Chr1:88780409-88780428 MsG0180005221.01.T01:intron 25.0%
!! AATTATATTTTCGCCCAAAA+TGG - Chr1:88777281-88777300 None:intergenic 25.0%
!! ACAATATCCAGCTTTTTAAA+AGG + Chr1:88779678-88779697 MsG0180005221.01.T01:intron 25.0%
!! ATAATATATCTCATTGGCTA+TGG - Chr1:88781926-88781945 None:intergenic 25.0%
!! GATGCATGATTTTATTGAAA+AGG + Chr1:88778461-88778480 MsG0180005221.01.T01:CDS 25.0%
!! TGATTTTATTGAAAAGGTTG+AGG + Chr1:88778467-88778486 MsG0180005221.01.T01:CDS 25.0%
!! TTTTGGGCGAAAATATAATT+TGG + Chr1:88777281-88777300 MsG0180005221.01.T01:intron 25.0%
!!! AATTTGTTTTGTGATAGTCT+AGG + Chr1:88776556-88776575 MsG0180005221.01.T01:intron 25.0%
!!! ACGTGATTTTTTGATCATTT+CGG - Chr1:88777006-88777025 None:intergenic 25.0%
!!! ATGCTTTGTTTATCTTTCTT+TGG - Chr1:88778231-88778250 None:intergenic 25.0%
!!! ATTTTATTTTACCTTCCCAA+TGG + Chr1:88779635-88779654 MsG0180005221.01.T01:intron 25.0%
!!! CACTTTTAACTTAATATTCG+CGG + Chr1:88779540-88779559 MsG0180005221.01.T01:intron 25.0%
!!! TCATTTAATCCTTGCTATTT+GGG + Chr1:88776658-88776677 MsG0180005221.01.T01:intron 25.0%
!!! TCTTAGTTTTTTTTTGGTAG+TGG + Chr1:88780230-88780249 MsG0180005221.01.T01:intron 25.0%
!!! TGTTACTTTGATATGTGAAA+GGG + Chr1:88777921-88777940 MsG0180005221.01.T01:intron 25.0%
!!! TTGTTACTTTGATATGTGAA+AGG + Chr1:88777920-88777939 MsG0180005221.01.T01:intron 25.0%
AAAACTTATTTCCCTCTTTG+TGG + Chr1:88778792-88778811 MsG0180005221.01.T01:CDS 30.0%
AAAGGTGGTAACAGATTATT+TGG - Chr1:88778563-88778582 None:intergenic 30.0%
ACAAACTTCACATTATCAAC+TGG + Chr1:88779486-88779505 MsG0180005221.01.T01:intron 30.0%
ATACAAACAACAACATTTGG+AGG - Chr1:88777758-88777777 None:intergenic 30.0%
ATTGGTAAATCCGATAAATG+TGG + Chr1:88777880-88777899 MsG0180005221.01.T01:intron 30.0%
CTGGAAACCTGAAAAATATA+TGG - Chr1:88781104-88781123 None:intergenic 30.0%
GATTATATAATCCGAACGAA+TGG - Chr1:88776959-88776978 None:intergenic 30.0%
GGATGATTAATGATAATAGG+CGG + Chr1:88778622-88778641 MsG0180005221.01.T01:CDS 30.0%
TAAAATCATGCATCCAAAGT+AGG - Chr1:88778455-88778474 None:intergenic 30.0%
TAGTCAAAATGTAAGCACAT+TGG - Chr1:88776882-88776901 None:intergenic 30.0%
TATATAATCCAAACTGTGTC+CGG - Chr1:88776981-88777000 None:intergenic 30.0%
TCTTTCATTGCCACATTTAT+CGG - Chr1:88777893-88777912 None:intergenic 30.0%
TGGATGCTAATGACATAAAA+AGG - Chr1:88781793-88781812 None:intergenic 30.0%
TGGTCAAAAGAGAACAAAAT+GGG - Chr1:88780883-88780902 None:intergenic 30.0%
TTCGTTCGGATTATATAATC+CGG + Chr1:88776959-88776978 MsG0180005221.01.T01:intron 30.0%
TTGGTCAAAAGAGAACAAAA+TGG - Chr1:88780884-88780903 None:intergenic 30.0%
! AAAAAATCTGAAGCCAGTAT+TGG + Chr1:88778398-88778417 MsG0180005221.01.T01:CDS 30.0%
! CATATTGTTGTTGATGTCAA+CGG - Chr1:88780839-88780858 None:intergenic 30.0%
! GAAATTTCAATTTTCGATGG+TGG - Chr1:88777683-88777702 None:intergenic 30.0%
! GAGCTTTACTTGATAATTGA+AGG + Chr1:88776490-88776509 MsG0180005221.01.T01:CDS 30.0%
! GTTACTTTGATATGTGAAAG+GGG + Chr1:88777922-88777941 MsG0180005221.01.T01:intron 30.0%
! TCATTTTCGTTTGAATGCAA+AGG + Chr1:88777339-88777358 MsG0180005221.01.T01:intron 30.0%
! TGTGAATGACAACCATTTTA+TGG + Chr1:88778854-88778873 MsG0180005221.01.T01:CDS 30.0%
!! AAATGATAATGGATGCATCA+TGG + Chr1:88780487-88780506 MsG0180005221.01.T01:intron 30.0%
!! CTCATTTAATCCTTGCTATT+TGG + Chr1:88776657-88776676 MsG0180005221.01.T01:intron 30.0%
!! GTTGATAATGTGAAGTTTGT+TGG - Chr1:88779486-88779505 None:intergenic 30.0%
!! TTGTTGTCCTTTTAAAAAGC+TGG - Chr1:88779688-88779707 None:intergenic 30.0%
!!! AATACTGGCTTCAGATTTTT+TGG - Chr1:88778399-88778418 None:intergenic 30.0%
!!! AGTTTTTTTTTGGTAGTGGT+CGG + Chr1:88780234-88780253 MsG0180005221.01.T01:intron 30.0%
!!! ATTTCGGCAGTTATTTTTAC+TGG + Chr1:88778155-88778174 MsG0180005221.01.T01:intron 30.0%
!!! TTTTTTGGAATTGGCTTAGA+AGG - Chr1:88778384-88778403 None:intergenic 30.0%
AAAACATGCATTCTGTTCTG+AGG - Chr1:88778033-88778052 None:intergenic 35.0%
AAAAGAACCTGCAACACAAT+AGG - Chr1:88777608-88777627 None:intergenic 35.0%
AAGAAGAGAAACAGTGTTGT+TGG - Chr1:88780917-88780936 None:intergenic 35.0%
AAGCTCCTAAAAATCGAATG+AGG - Chr1:88777385-88777404 None:intergenic 35.0%
AATGAACACAGTTTCTGTAC+TGG - Chr1:88777504-88777523 None:intergenic 35.0%
ACAAAGACCAAATCCTACTT+TGG + Chr1:88778439-88778458 MsG0180005221.01.T01:CDS 35.0%
ACCACAATGACATGCAAATT+TGG + Chr1:88779296-88779315 MsG0180005221.01.T01:intron 35.0%
AGCATGGTCATCCATTTATA+CGG - Chr1:88778699-88778718 None:intergenic 35.0%
AGCTCCTAAAAATCGAATGA+GGG - Chr1:88777384-88777403 None:intergenic 35.0%
ATCAACTGGATCATGTTTGT+GGG + Chr1:88779500-88779519 MsG0180005221.01.T01:intron 35.0%
ATGCACCTTCATGTTGTAAT+CGG - Chr1:88778124-88778143 None:intergenic 35.0%
ATGCATGTGTATACCTTGAA+TGG - Chr1:88780972-88780991 None:intergenic 35.0%
ATGTGGACTTTAACCAATAC+TGG - Chr1:88778414-88778433 None:intergenic 35.0%
ATTGTAAAGCCCAAATAGCA+AGG - Chr1:88776670-88776689 None:intergenic 35.0%
ATTTCTTCATAGCAACGCAA+AGG + Chr1:88780786-88780805 MsG0180005221.01.T01:intron 35.0%
CATAATATATGCAAGGTCTG+AGG - Chr1:88780268-88780287 None:intergenic 35.0%
CATCAATAGTCAAGTTACGT+AGG - Chr1:88778536-88778555 None:intergenic 35.0%
CCACAATGACATGCAAATTT+GGG + Chr1:88779297-88779316 MsG0180005221.01.T01:intron 35.0%
CGAAATGTTCATATGCATTC+CGG + Chr1:88777982-88778001 MsG0180005221.01.T01:intron 35.0%
CGGAATGCATATGAACATTT+CGG - Chr1:88777984-88778003 None:intergenic 35.0%
GATCATATGACGTGATCAAA+AGG - Chr1:88777409-88777428 None:intergenic 35.0%
GTATATATAACCTAGCCGTT+CGG - Chr1:88777192-88777211 None:intergenic 35.0%
GTTCACAGACAAAATCAACA+GGG + Chr1:88778316-88778335 MsG0180005221.01.T01:CDS 35.0%
TAAAGCTCAATGCCAAGAAT+TGG - Chr1:88776478-88776497 None:intergenic 35.0%
TAGAAAATTCTCGCTATCAG+AGG + Chr1:88778601-88778620 MsG0180005221.01.T01:CDS 35.0%
TATATAATCCGGACACAGTT+TGG + Chr1:88776970-88776989 MsG0180005221.01.T01:intron 35.0%
TATCAACTGGATCATGTTTG+TGG + Chr1:88779499-88779518 MsG0180005221.01.T01:intron 35.0%
TCAAATCCACTGCCATAAAA+TGG - Chr1:88778869-88778888 None:intergenic 35.0%
TCCAAGTTTCAGAAAAGACA+TGG - Chr1:88777033-88777052 None:intergenic 35.0%
TGACCAAAATACCATTCGTT+CGG + Chr1:88776945-88776964 MsG0180005221.01.T01:intron 35.0%
TGATAATAGGCGGTATAAAG+AGG + Chr1:88778632-88778651 MsG0180005221.01.T01:CDS 35.0%
TGATGTACACCGTATACAAT+TGG + Chr1:88779751-88779770 MsG0180005221.01.T01:intron 35.0%
TGCGGTTTATGAAAGAAAGA+GGG + Chr1:88780606-88780625 MsG0180005221.01.T01:intron 35.0%
TTGGCTACATCAAGATCAAA+AGG - Chr1:88776343-88776362 None:intergenic 35.0%
TTTCTTCATAGCAACGCAAA+GGG + Chr1:88780787-88780806 MsG0180005221.01.T01:intron 35.0%
TTTCTTTCATAAACCGCACT+CGG - Chr1:88780604-88780623 None:intergenic 35.0%
! AATCCGAACGAATGGTATTT+TGG - Chr1:88776951-88776970 None:intergenic 35.0%
! AGAAGAGAAACAGTGTTGTT+GGG - Chr1:88780916-88780935 None:intergenic 35.0%
! AGTAGGATTTGGTCTTTGTA+TGG - Chr1:88778438-88778457 None:intergenic 35.0%
! ATTCTCGGATTTGGCATTTT+CGG - Chr1:88777651-88777670 None:intergenic 35.0%
! TAATTCTTGTTTGAGAGGGT+TGG + Chr1:88780413-88780432 MsG0180005221.01.T01:intron 35.0%
! TATAATTTGGAGCAGCAATC+TGG + Chr1:88777294-88777313 MsG0180005221.01.T01:intron 35.0%
! TGTCTAGAGTCAATCAAGAA+TGG + Chr1:88781832-88781851 MsG0180005221.01.T01:CDS 35.0%
! TTCTGAGGACTGATACAATT+TGG - Chr1:88778018-88778037 None:intergenic 35.0%
! TTGAGCTTTATGTGTGTTGT+GGG - Chr1:88781042-88781061 None:intergenic 35.0%
! TTTCGCACTGTTTTCAGTTA+TGG + Chr1:88777535-88777554 MsG0180005221.01.T01:intron 35.0%
! TTTGGTCTTTGTATGGTATG+TGG - Chr1:88778431-88778450 None:intergenic 35.0%
!! ATCTTTCTTTGGAGCTCATT+TGG - Chr1:88778220-88778239 None:intergenic 35.0%
!! ATTTCAATTTTCGATGGTGG+TGG - Chr1:88777680-88777699 None:intergenic 35.0%
!! CTCTAGAAACACACCATTTT+GGG + Chr1:88777265-88777284 MsG0180005221.01.T01:intron 35.0%
!! TTTTATGGCAGTGGATTTGA+AGG + Chr1:88778869-88778888 MsG0180005221.01.T01:CDS 35.0%
!!! ACCATGTCTTTTCTGAAACT+TGG + Chr1:88777029-88777048 MsG0180005221.01.T01:intron 35.0%
!!! CTATTACTTTTTCCACCCTA+TGG - Chr1:88779448-88779467 None:intergenic 35.0%
!!! GGCTTCAGATTTTTTGGAAT+TGG - Chr1:88778393-88778412 None:intergenic 35.0%
!!! GTATTTTGGTCAAAAACGCA+GGG - Chr1:88776937-88776956 None:intergenic 35.0%
!!! GTTTTTTTTTGGTAGTGGTC+GGG + Chr1:88780235-88780254 MsG0180005221.01.T01:intron 35.0%
!!! TTTTTTACACATTGTAGGCC+CGG + Chr1:88778088-88778107 MsG0180005221.01.T01:intron 35.0%
!!! TTTTTTTTTGGTAGTGGTCG+GGG + Chr1:88780236-88780255 MsG0180005221.01.T01:intron 35.0%
AAAATCTTGATCCCGATGAG+AGG + Chr1:88779061-88779080 MsG0180005221.01.T01:CDS 40.0%
AAATCTTGATCCCGATGAGA+GGG + Chr1:88779062-88779081 MsG0180005221.01.T01:CDS 40.0%
AATAGACGACTAAGTCGTCA+TGG + Chr1:88776824-88776843 MsG0180005221.01.T01:intron 40.0%
AATTAATGAGCTAAGTCGGG+CGG + Chr1:88778993-88779012 MsG0180005221.01.T01:CDS 40.0%
ACAATAGGAGGTTCAATCTC+AGG - Chr1:88777593-88777612 None:intergenic 40.0%
ACTTTGATATGTGAAAGGGG+AGG + Chr1:88777925-88777944 MsG0180005221.01.T01:intron 40.0%
ATAGACGACTAAGTCGTCAT+GGG + Chr1:88776825-88776844 MsG0180005221.01.T01:intron 40.0%
ATCCGACTGACATATCTATC+AGG - Chr1:88778963-88778982 None:intergenic 40.0%
ATCTCAGGTGGATCATCATT+TGG - Chr1:88777578-88777597 None:intergenic 40.0%
ATGGTCATCCATTTATACGG+TGG - Chr1:88778696-88778715 None:intergenic 40.0%
CAAGAATGGAGAAGCAGATT+TGG + Chr1:88781846-88781865 MsG0180005221.01.T01:CDS 40.0%
CACCTTTACAAAGAGCTTGT+CGG + Chr1:88778576-88778595 MsG0180005221.01.T01:CDS 40.0%
CATGCATCCAAAGTAGGATT+TGG - Chr1:88778449-88778468 None:intergenic 40.0%
CCCAAATTTGCATGTCATTG+TGG - Chr1:88779300-88779319 None:intergenic 40.0%
CCTAAAAATCGAATGAGGGA+GGG - Chr1:88777380-88777399 None:intergenic 40.0%
CTACACAAAAGTTTGCAACG+CGG + Chr1:88777801-88777820 MsG0180005221.01.T01:CDS 40.0%
CTCTATCCTTTAGCGGTATT+GGG + Chr1:88778664-88778683 MsG0180005221.01.T01:CDS 40.0%
CTGAAACTTGGACTTGATCA+GGG + Chr1:88777041-88777060 MsG0180005221.01.T01:intron 40.0%
CTGCTAGAAGAAACGTGAAA+AGG - Chr1:88781702-88781721 None:intergenic 40.0%
GCGGTTTATGAAAGAAAGAG+GGG + Chr1:88780607-88780626 MsG0180005221.01.T01:intron 40.0%
GGTTCACAGACAAAATCAAC+AGG + Chr1:88778315-88778334 MsG0180005221.01.T01:CDS 40.0%
GTATAAATGGATGACCATGC+TGG + Chr1:88778698-88778717 MsG0180005221.01.T01:CDS 40.0%
GTGCGGTTTATGAAAGAAAG+AGG + Chr1:88780605-88780624 MsG0180005221.01.T01:intron 40.0%
TCAAACGCTCTATCCTTTAG+CGG + Chr1:88778657-88778676 MsG0180005221.01.T01:CDS 40.0%
TCACGTCATATGATCTGTAC+TGG + Chr1:88777414-88777433 MsG0180005221.01.T01:intron 40.0%
TCCTAAAAATCGAATGAGGG+AGG - Chr1:88777381-88777400 None:intergenic 40.0%
TCTCAGGTGGATCATCATTT+GGG - Chr1:88777577-88777596 None:intergenic 40.0%
TGAAATGCATGAATGCAGTC+CGG - Chr1:88777460-88777479 None:intergenic 40.0%
TGATAGATATGTCAGTCGGA+TGG + Chr1:88778962-88778981 MsG0180005221.01.T01:intron 40.0%
TGATGTAGCCAAAAGAGAAG+TGG + Chr1:88776351-88776370 MsG0180005221.01.T01:CDS 40.0%
TGTTCATACAATGCACAACC+TGG - Chr1:88779661-88779680 None:intergenic 40.0%
TTCCGCTCAGTTCAAATACA+GGG - Chr1:88777133-88777152 None:intergenic 40.0%
TTGGTTAATGACACCGACAA+AGG - Chr1:88781440-88781459 None:intergenic 40.0%
TTGTGTTGTCCATTGGGAAA+GGG + Chr1:88778763-88778782 MsG0180005221.01.T01:CDS 40.0%
TTTCCGCTCAGTTCAAATAC+AGG - Chr1:88777134-88777153 None:intergenic 40.0%
! AACAAAGCATTCGATCGACA+AGG + Chr1:88778241-88778260 MsG0180005221.01.T01:intron 40.0%
! AAGGTGCTTAAAGAATACCC+TGG - Chr1:88781603-88781622 None:intergenic 40.0%
! AATCCTGGGCTTTCTCTTTT+TGG - Chr1:88781813-88781832 None:intergenic 40.0%
! ACAACATTTGGAGGTACAAC+AGG - Chr1:88777749-88777768 None:intergenic 40.0%
! CAGTTCAAATACAGGGTGTT+CGG - Chr1:88777126-88777145 None:intergenic 40.0%
! CGTTGCAAACTTTTGTGTAG+TGG - Chr1:88777801-88777820 None:intergenic 40.0%
! GATTGACTCTAGACAATCCT+GGG - Chr1:88781827-88781846 None:intergenic 40.0%
! GCTCAGTTTTTCGCTGTTAT+TGG + Chr1:88777862-88777881 MsG0180005221.01.T01:intron 40.0%
! GGATAAGTAGAAAGAGTGCA+CGG + Chr1:88778337-88778356 MsG0180005221.01.T01:CDS 40.0%
! GTTGAGCTTTATGTGTGTTG+TGG - Chr1:88781043-88781062 None:intergenic 40.0%
! TCTGAAACTTGGACTTGATC+AGG + Chr1:88777040-88777059 MsG0180005221.01.T01:intron 40.0%
! TGACAACCATTTTATGGCAG+TGG + Chr1:88778860-88778879 MsG0180005221.01.T01:CDS 40.0%
! TGATCTGTACTGGAGCATTA+TGG + Chr1:88777424-88777443 MsG0180005221.01.T01:intron 40.0%
! TGATTGACTCTAGACAATCC+TGG - Chr1:88781828-88781847 None:intergenic 40.0%
!! CATTTGGTGGTGACCTTATT+TGG - Chr1:88778204-88778223 None:intergenic 40.0%
!! CCAAAATGGTGTGTTTCTAG+AGG - Chr1:88777267-88777286 None:intergenic 40.0%
!! CCTCTAGAAACACACCATTT+TGG + Chr1:88777264-88777283 MsG0180005221.01.T01:intron 40.0%
!! CGGTGTCATTAACCAACTAA+CGG + Chr1:88781444-88781463 MsG0180005221.01.T01:CDS 40.0%
!! GATTTGGTGAACTTAGAAGC+AGG + Chr1:88781862-88781881 MsG0180005221.01.T01:CDS 40.0%
!! GGTGTCATTAACCAACTAAC+GGG + Chr1:88781445-88781464 MsG0180005221.01.T01:CDS 40.0%
!! TCGTGCTTTTTAAACCTTCG+AGG - Chr1:88776859-88776878 None:intergenic 40.0%
!! TGACGGATTGCATATGCATA+TGG - Chr1:88776436-88776455 None:intergenic 40.0%
!! TTTCTTTGGAGCTCATTTGG+TGG - Chr1:88778217-88778236 None:intergenic 40.0%
!!! ACTGTCATTTTGGTTGTTGC+TGG - Chr1:88778066-88778085 None:intergenic 40.0%
!!! CTGTCATTTTGGTTGTTGCT+GGG - Chr1:88778065-88778084 None:intergenic 40.0%
!!! GGTATTTTGGTCAAAAACGC+AGG - Chr1:88776938-88776957 None:intergenic 40.0%
AAAACGAAATCCGAACGGCT+AGG + Chr1:88777179-88777198 MsG0180005221.01.T01:intron 45.0%
AAATACTAACGAGTGCCTCC+AGG + Chr1:88781582-88781601 MsG0180005221.01.T01:intron 45.0%
AACAATCTCCCATAGCGAAG+GGG - Chr1:88778271-88778290 None:intergenic 45.0%
AATACTAACGAGTGCCTCCA+GGG + Chr1:88781583-88781602 MsG0180005221.01.T01:intron 45.0%
ACGGTTGTTGTGTTGTCCAT+TGG + Chr1:88778756-88778775 MsG0180005221.01.T01:CDS 45.0%
AGAACCTGCAACACAATAGG+AGG - Chr1:88777605-88777624 None:intergenic 45.0%
ATAGGAGGTTCAATCTCAGG+TGG - Chr1:88777590-88777609 None:intergenic 45.0%
ATGATGTTAACCCCCCTTGA+TGG - Chr1:88777320-88777339 None:intergenic 45.0%
ATGGATGACCATGCTGGATA+TGG + Chr1:88778704-88778723 MsG0180005221.01.T01:CDS 45.0%
ATTGTCTCTACACCTCCCAT+AGG + Chr1:88779563-88779582 MsG0180005221.01.T01:intron 45.0%
CAACAATCTCCCATAGCGAA+GGG - Chr1:88778272-88778291 None:intergenic 45.0%
CACCCTGTATTTGAACTGAG+CGG + Chr1:88777128-88777147 MsG0180005221.01.T01:intron 45.0%
CACCGACAAGCTCTTTGTAA+AGG - Chr1:88778581-88778600 None:intergenic 45.0%
CATCCAAAAAGAGAAAGCCC+AGG + Chr1:88781807-88781826 MsG0180005221.01.T01:CDS 45.0%
CCAATATCGGAAAATGGGGT+GGG + Chr1:88781328-88781347 MsG0180005221.01.T01:CDS 45.0%
CCGAGTACAAGAGAAAGACT+CGG + Chr1:88777956-88777975 MsG0180005221.01.T01:intron 45.0%
CCGAGTCTTTCTCTTGTACT+CGG - Chr1:88777959-88777978 None:intergenic 45.0%
CGACAAGCTCTTTGTAAAGG+TGG - Chr1:88778578-88778597 None:intergenic 45.0%
CGGCTCCAATATCGGAAAAT+GGG + Chr1:88781323-88781342 MsG0180005221.01.T01:CDS 45.0%
CGGTTGTTGTGTTGTCCATT+GGG + Chr1:88778757-88778776 MsG0180005221.01.T01:CDS 45.0%
CTCAGGTGGATCATCATTTG+GGG - Chr1:88777576-88777595 None:intergenic 45.0%
CTGTCATCACTCTCCATTCA+AGG + Chr1:88780956-88780975 MsG0180005221.01.T01:intron 45.0%
GAAAAGGTTGAGGATGTACC+TGG + Chr1:88778477-88778496 MsG0180005221.01.T01:CDS 45.0%
GAGTGATGACAGAAGAAGAG+AGG - Chr1:88780948-88780967 None:intergenic 45.0%
GCTCTATCCTTTAGCGGTAT+TGG + Chr1:88778663-88778682 MsG0180005221.01.T01:CDS 45.0%
GGAATGCACCACCGTATAAA+TGG + Chr1:88778685-88778704 MsG0180005221.01.T01:CDS 45.0%
GGCCTGATAGATATGTCAGT+CGG + Chr1:88778958-88778977 MsG0180005221.01.T01:intron 45.0%
GGCTCCAATATCGGAAAATG+GGG + Chr1:88781324-88781343 MsG0180005221.01.T01:CDS 45.0%
GTAGCCAAAAGAGAAGTGGA+GGG + Chr1:88776355-88776374 MsG0180005221.01.T01:CDS 45.0%
GTGCTTAAAGAATACCCTGG+AGG - Chr1:88781600-88781619 None:intergenic 45.0%
GTTGTGTTGTCCATTGGGAA+AGG + Chr1:88778762-88778781 MsG0180005221.01.T01:CDS 45.0%
TAGCCAAAAGAGAAGTGGAG+GGG + Chr1:88776356-88776375 MsG0180005221.01.T01:CDS 45.0%
TATGCCTCCATCGCCAAATA+AGG + Chr1:88778188-88778207 MsG0180005221.01.T01:intron 45.0%
TCAACAATCTCCCATAGCGA+AGG - Chr1:88778273-88778292 None:intergenic 45.0%
TCAAGAGGTGATAGGAGATG+AGG + Chr1:88779020-88779039 MsG0180005221.01.T01:CDS 45.0%
TCCAATATCGGAAAATGGGG+TGG + Chr1:88781327-88781346 MsG0180005221.01.T01:CDS 45.0%
TCCGGAAAACGAAATCCGAA+CGG + Chr1:88777174-88777193 MsG0180005221.01.T01:intron 45.0%
TGAACCTCCTATTGTGTTGC+AGG + Chr1:88777598-88777617 MsG0180005221.01.T01:CDS 45.0%
TGCAATCCGTCAAAACTCTC+AGG + Chr1:88776444-88776463 MsG0180005221.01.T01:CDS 45.0%
TGCATTCCCAATACCGCTAA+AGG - Chr1:88778673-88778692 None:intergenic 45.0%
TGGATGACCATGCTGGATAT+GGG + Chr1:88778705-88778724 MsG0180005221.01.T01:CDS 45.0%
TGTAGCCAAAAGAGAAGTGG+AGG + Chr1:88776354-88776373 MsG0180005221.01.T01:CDS 45.0%
TGTTGTTGGGATCTGCATCT+TGG - Chr1:88780903-88780922 None:intergenic 45.0%
TTTAGGCGATGCGAAAGTAG+AGG + Chr1:88777703-88777722 MsG0180005221.01.T01:CDS 45.0%
TTTGGTTGTTGCTGGGAACT+AGG - Chr1:88778058-88778077 None:intergenic 45.0%
! AAAGCATTCGATCGACAAGG+CGG + Chr1:88778244-88778263 MsG0180005221.01.T01:intron 45.0%
! ACATTTGGAGGTACAACAGG+AGG - Chr1:88777746-88777765 None:intergenic 45.0%
! AGTGGGTTTGAGAGAAAGCA+AGG + Chr1:88777837-88777856 MsG0180005221.01.T01:intron 45.0%
! ATGGCAGTGGATTTGAAGGA+TGG + Chr1:88778873-88778892 MsG0180005221.01.T01:CDS 45.0%
! ATTTTACCTTCCCAATGGCC+AGG + Chr1:88779640-88779659 MsG0180005221.01.T01:intron 45.0%
! CCCTCCCTCATTCGATTTTT+AGG + Chr1:88777377-88777396 MsG0180005221.01.T01:intron 45.0%
! TGAGCTTAGCTCAGTTGGTA+TGG - Chr1:88780297-88780316 None:intergenic 45.0%
! TGCAACGCGGAATGATTTGT+TGG + Chr1:88777814-88777833 MsG0180005221.01.T01:CDS 45.0%
!! AAGGAGTGTCAGTCCTTTGT+CGG + Chr1:88781424-88781443 MsG0180005221.01.T01:CDS 45.0%
!! CATGACTCTGAAGTGCCTAT+GGG - Chr1:88779581-88779600 None:intergenic 45.0%
!! GCGGAATGATTTGTTGGAGT+GGG + Chr1:88777820-88777839 MsG0180005221.01.T01:CDS 45.0%
!! GGTGTGTTTCTAGAGGTGTA+GGG - Chr1:88777260-88777279 None:intergenic 45.0%
!! GTAGGGAGTGCTTGTGATAA+AGG - Chr1:88777243-88777262 None:intergenic 45.0%
!! TGGTGTGTTTCTAGAGGTGT+AGG - Chr1:88777261-88777280 None:intergenic 45.0%
!!! AATTTTCGATGGTGGTGGTG+GGG - Chr1:88777675-88777694 None:intergenic 45.0%
!!! CAATTTTCGATGGTGGTGGT+GGG - Chr1:88777676-88777695 None:intergenic 45.0%
!!! TCAATTTTCGATGGTGGTGG+TGG - Chr1:88777677-88777696 None:intergenic 45.0%
!! AAAATAAAATAAAATTACAA+AGG - Chr1:88779625-88779644 None:intergenic 5.0%
!!! TATTTTTGAAAAAAAAAATA+GGG + Chr1:88779410-88779429 MsG0180005221.01.T01:intron 5.0%
AAAGGTGGTGAGCTTCAGCT+AGG - Chr1:88777225-88777244 None:intergenic 50.0%
AACCCTGTGTCTGTTGTTCC+TGG - Chr1:88778299-88778318 None:intergenic 50.0%
ACAACAGGAGGAACAAGAGG+AGG - Chr1:88777734-88777753 None:intergenic 50.0%
ACAATGCACAACCTGGCCAT+TGG - Chr1:88779654-88779673 None:intergenic 50.0%
ACCCTGTGTCTGTTGTTCCT+GGG - Chr1:88778298-88778317 None:intergenic 50.0%
AGCAGCAATCTGGCCATCAA+GGG + Chr1:88777304-88777323 MsG0180005221.01.T01:intron 50.0%
AGTAAGGTGGTGCACAGTGA+GGG + Chr1:88781393-88781412 MsG0180005221.01.T01:CDS 50.0%
ATATCGGAAAATGGGGTGGG+AGG + Chr1:88781331-88781350 MsG0180005221.01.T01:CDS 50.0%
ATCACCCGATCGATACATGG+AGG - Chr1:88778822-88778841 None:intergenic 50.0%
ATGGAGGTGGACCACAAAGA+GGG - Chr1:88778806-88778825 None:intergenic 50.0%
CAAAGCTGCGGCTCCAATAT+CGG + Chr1:88781315-88781334 MsG0180005221.01.T01:CDS 50.0%
CAACTGCTCGAAACCCACAA+TGG - Chr1:88778509-88778528 None:intergenic 50.0%
CAATAGGTCTCCCAAAGCTG+CGG + Chr1:88781303-88781322 MsG0180005221.01.T01:CDS 50.0%
CAATGCACAACCTGGCCATT+GGG - Chr1:88779653-88779672 None:intergenic 50.0%
CACATCACCCGATCGATACA+TGG - Chr1:88778825-88778844 None:intergenic 50.0%
CGCGCAGAAATTCAACCACA+CGG + Chr1:88778737-88778756 MsG0180005221.01.T01:CDS 50.0%
CTCGAGAGGATGCACAAAAC+TGG + Chr1:88778937-88778956 MsG0180005221.01.T01:intron 50.0%
GAGGAAACCCATATCCAGCA+TGG - Chr1:88778715-88778734 None:intergenic 50.0%
GATATTGGAGCCGCAGCTTT+GGG - Chr1:88781316-88781335 None:intergenic 50.0%
GCGGCTCCAATATCGGAAAA+TGG + Chr1:88781322-88781341 MsG0180005221.01.T01:CDS 50.0%
GGTACAACAGGAGGAACAAG+AGG - Chr1:88777737-88777756 None:intergenic 50.0%
GGTTGAATTTCTGCGCGATG+AGG - Chr1:88778734-88778753 None:intergenic 50.0%
GGTTGGAACTCGTGAACTGA+TGG - Chr1:88781172-88781191 None:intergenic 50.0%
GTTGAGGATGTACCTGGTGA+TGG + Chr1:88778483-88778502 MsG0180005221.01.T01:CDS 50.0%
TATCGATCGGGTGATGTGTC+TGG + Chr1:88778827-88778846 MsG0180005221.01.T01:CDS 50.0%
TCCACTTCAACCTTCACACC+AGG - Chr1:88779099-88779118 None:intergenic 50.0%
TCCCAGGAACAACAGACACA+GGG + Chr1:88778294-88778313 MsG0180005221.01.T01:intron 50.0%
TCCTGGTGTGAAGGTTGAAG+TGG + Chr1:88779095-88779114 MsG0180005221.01.T01:CDS 50.0%
TCGTGATCATCACCAGAGCT+TGG - Chr1:88781139-88781158 None:intergenic 50.0%
TGATGGAGGAGTGGCACAAT+AGG + Chr1:88781287-88781306 MsG0180005221.01.T01:CDS 50.0%
TGGAACTCGTGAACTGATGG+AGG - Chr1:88781169-88781188 None:intergenic 50.0%
TGGACAACACAACAACCGTG+TGG - Chr1:88778755-88778774 None:intergenic 50.0%
TGTAATCGGCGTCCTTGAAC+CGG - Chr1:88778110-88778129 None:intergenic 50.0%
TTGTGGGTTTCGAGCAGTTG+CGG + Chr1:88778509-88778528 MsG0180005221.01.T01:CDS 50.0%
TTTCGATCGCCCTTTCCCAA+TGG - Chr1:88778775-88778794 None:intergenic 50.0%
! ATGCCCCTCCACTTCTCTTT+TGG - Chr1:88776362-88776381 None:intergenic 50.0%
! ATTTGGCGATGGAGGCATAG+AGG - Chr1:88778187-88778206 None:intergenic 50.0%
! CAGAAGGTAGTGGCAATGGT+GGG + Chr1:88781227-88781246 MsG0180005221.01.T01:CDS 50.0%
! CCCACCCCATTTTCCGATAT+TGG - Chr1:88781331-88781350 None:intergenic 50.0%
! CCGTCAAAACTCTCAGGTTG+CGG + Chr1:88776450-88776469 MsG0180005221.01.T01:CDS 50.0%
! CGTCAAAACTCTCAGGTTGC+GGG + Chr1:88776451-88776470 MsG0180005221.01.T01:CDS 50.0%
! GATGCAGAAGGTAGTGGCAA+TGG + Chr1:88781223-88781242 MsG0180005221.01.T01:CDS 50.0%
! GCCGTTCGGATTTCGTTTTC+CGG - Chr1:88777178-88777197 None:intergenic 50.0%
! GGACGCCGATTACAACATGA+AGG + Chr1:88778116-88778135 MsG0180005221.01.T01:intron 50.0%
! GTCAAAACTCTCAGGTTGCG+GGG + Chr1:88776452-88776471 MsG0180005221.01.T01:CDS 50.0%
! GTCCACCTCCATGTATCGAT+CGG + Chr1:88778814-88778833 MsG0180005221.01.T01:CDS 50.0%
! GTGACCTTATTTGGCGATGG+AGG - Chr1:88778195-88778214 None:intergenic 50.0%
! GTGGTGACCTTATTTGGCGA+TGG - Chr1:88778198-88778217 None:intergenic 50.0%
! TCATCACCAGAGCTTGGTGA+TGG - Chr1:88781133-88781152 None:intergenic 50.0%
! TCCACCTCCATGTATCGATC+GGG + Chr1:88778815-88778834 MsG0180005221.01.T01:CDS 50.0%
!! ATGGGAGATTGTTGACTCCC+AGG + Chr1:88778278-88778297 MsG0180005221.01.T01:intron 50.0%
!! CATGGGCTCTAAAACCTCGA+AGG + Chr1:88776842-88776861 MsG0180005221.01.T01:intron 50.0%
!! CCGCAACCTGAGAGTTTTGA+CGG - Chr1:88776453-88776472 None:intergenic 50.0%
!! CGCGGAATGATTTGTTGGAG+TGG + Chr1:88777819-88777838 MsG0180005221.01.T01:CDS 50.0%
!! GAGAGTGTCGTCTCCATAGA+GGG - Chr1:88778920-88778939 None:intergenic 50.0%
!! GCATGACTCTGAAGTGCCTA+TGG - Chr1:88779582-88779601 None:intergenic 50.0%
!! GGCAATGGTGGGTCTATTTC+CGG + Chr1:88781238-88781257 MsG0180005221.01.T01:CDS 50.0%
!! GGGAGTGCTTGTGATAAAGG+TGG - Chr1:88777240-88777259 None:intergenic 50.0%
!! GTTTCTGTACTGGTGCTGCT+CGG - Chr1:88777494-88777513 None:intergenic 50.0%
!! TAACGGGCTACGTGTGGAAA+TGG + Chr1:88781461-88781480 MsG0180005221.01.T01:CDS 50.0%
!! TACCTGGTGATGGCCATTGT+GGG + Chr1:88778493-88778512 MsG0180005221.01.T01:CDS 50.0%
!!! ATTTTCGATGGTGGTGGTGG+GGG - Chr1:88777674-88777693 None:intergenic 50.0%
AACCCACAATGGCCATCACC+AGG - Chr1:88778498-88778517 None:intergenic 55.0%
AATGATCCGGCGACGGATGA+CGG + Chr1:88781367-88781386 MsG0180005221.01.T01:CDS 55.0%
ACCAGGACCAACCCTCTCAT+CGG - Chr1:88779076-88779095 None:intergenic 55.0%
ACCCGATCGATACATGGAGG+TGG - Chr1:88778819-88778838 None:intergenic 55.0%
AGCAATCTGGCCATCAAGGG+GGG + Chr1:88777307-88777326 MsG0180005221.01.T01:intron 55.0%
ATGGAGACGACACTCTCGAG+AGG + Chr1:88778923-88778942 MsG0180005221.01.T01:intron 55.0%
CACAGTGAGGGACGAAGTGA+AGG + Chr1:88781405-88781424 MsG0180005221.01.T01:CDS 55.0%
CACATTGTAGGCCCGGTTCA+AGG + Chr1:88778095-88778114 MsG0180005221.01.T01:intron 55.0%
CAGCAATCTGGCCATCAAGG+GGG + Chr1:88777306-88777325 MsG0180005221.01.T01:intron 55.0%
CATGGAGGTGGACCACAAAG+AGG - Chr1:88778807-88778826 None:intergenic 55.0%
CCAACTGAGCTAAGCTCACG+AGG + Chr1:88780299-88780318 MsG0180005221.01.T01:intron 55.0%
CCACTACCTTCTGCATCCAC+TGG - Chr1:88781220-88781239 None:intergenic 55.0%
CCAGTGGATGCAGAAGGTAG+TGG + Chr1:88781217-88781236 MsG0180005221.01.T01:CDS 55.0%
CCATGGCACACCCAATGATC+CGG + Chr1:88781354-88781373 MsG0180005221.01.T01:CDS 55.0%
CCATTGCCATCACCAAGCTC+TGG + Chr1:88781124-88781143 MsG0180005221.01.T01:CDS 55.0%
CCTCGTGAGCTTAGCTCAGT+TGG - Chr1:88780302-88780321 None:intergenic 55.0%
CGATATTGGAGCCGCAGCTT+TGG - Chr1:88781317-88781336 None:intergenic 55.0%
CGTCTCCATAGAGGGCAAGT+GGG - Chr1:88778912-88778931 None:intergenic 55.0%
CTACCTTCTGCATCCACTGG+AGG - Chr1:88781217-88781236 None:intergenic 55.0%
CTCCCAGGAACAACAGACAC+AGG + Chr1:88778293-88778312 MsG0180005221.01.T01:intron 55.0%
CTTCCTCCAGTGGATGCAGA+AGG + Chr1:88781211-88781230 MsG0180005221.01.T01:CDS 55.0%
CTTGATCCCGATGAGAGGGT+TGG + Chr1:88779066-88779085 MsG0180005221.01.T01:CDS 55.0%
GAGCAGCAATCTGGCCATCA+AGG + Chr1:88777303-88777322 MsG0180005221.01.T01:intron 55.0%
GAGTAAGGTGGTGCACAGTG+AGG + Chr1:88781392-88781411 MsG0180005221.01.T01:CDS 55.0%
GCAGCAATCTGGCCATCAAG+GGG + Chr1:88777305-88777324 MsG0180005221.01.T01:intron 55.0%
GTAATCGGCGTCCTTGAACC+GGG - Chr1:88778109-88778128 None:intergenic 55.0%
TAATGAGCTAAGTCGGGCGG+CGG + Chr1:88778996-88779015 MsG0180005221.01.T01:CDS 55.0%
TCAACCTTCACACCAGGACC+AGG - Chr1:88779093-88779112 None:intergenic 55.0%
TCATCCGTCGCCGGATCATT+GGG - Chr1:88781367-88781386 None:intergenic 55.0%
TCCACACGTAGCCCGTTAGT+TGG - Chr1:88781459-88781478 None:intergenic 55.0%
TCGTCTCCATAGAGGGCAAG+TGG - Chr1:88778913-88778932 None:intergenic 55.0%
TGGTGGGGGATTCTCGGATT+TGG - Chr1:88777660-88777679 None:intergenic 55.0%
TTCCTCCCACTTGCCCTCTA+TGG + Chr1:88778904-88778923 MsG0180005221.01.T01:intron 55.0%
! GAAAAGCGTGTGACCGAGTG+CGG + Chr1:88780588-88780607 MsG0180005221.01.T01:intron 55.0%
! GCAGAAGGTAGTGGCAATGG+TGG + Chr1:88781226-88781245 MsG0180005221.01.T01:CDS 55.0%
!! ACCAACTAACGGGCTACGTG+TGG + Chr1:88781455-88781474 MsG0180005221.01.T01:CDS 55.0%
!! AGCTTGGTGATGGCAATGGC+TGG - Chr1:88781123-88781142 None:intergenic 55.0%
!! CCAGAGCTTGGTGATGGCAA+TGG - Chr1:88781127-88781146 None:intergenic 55.0%
!! CGAGAGTGTCGTCTCCATAG+AGG - Chr1:88778921-88778940 None:intergenic 55.0%
!! GACTCTGAAGTGCCTATGGG+AGG - Chr1:88779578-88779597 None:intergenic 55.0%
!! GTACCTGGTGATGGCCATTG+TGG + Chr1:88778492-88778511 MsG0180005221.01.T01:CDS 55.0%
AAGGCGGTCCCCTTCGCTAT+GGG + Chr1:88778260-88778279 MsG0180005221.01.T01:intron 60.0%
AGGGCGCGCGAGAATTCCAT+AGG + Chr1:88779429-88779448 MsG0180005221.01.T01:intron 60.0%
CACACCCAATGATCCGGCGA+CGG + Chr1:88781360-88781379 MsG0180005221.01.T01:CDS 60.0%
CAGGTTGCGGGGCCAATTCT+TGG + Chr1:88776463-88776482 MsG0180005221.01.T01:CDS 60.0%
CCAGGACCAACCCTCTCATC+GGG - Chr1:88779075-88779094 None:intergenic 60.0%
CCGGATCATTGGGTGTGCCA+TGG - Chr1:88781357-88781376 None:intergenic 60.0%
CGCGCGAGAATTCCATAGGG+TGG + Chr1:88779433-88779452 MsG0180005221.01.T01:intron 60.0%
CTCCATAGAGGGCAAGTGGG+AGG - Chr1:88778909-88778928 None:intergenic 60.0%
CTGGTGGCAGAAGAGGTGGT+TGG - Chr1:88781189-88781208 None:intergenic 60.0%
GAAAATGGGGTGGGAGGCCA+TGG + Chr1:88781337-88781356 MsG0180005221.01.T01:CDS 60.0%
GCACAACCTGGCCATTGGGA+AGG - Chr1:88779649-88779668 None:intergenic 60.0%
GCGGCGGATCAAGAGGTGAT+AGG + Chr1:88779012-88779031 MsG0180005221.01.T01:CDS 60.0%
GGGCGCGCGAGAATTCCATA+GGG + Chr1:88779430-88779449 MsG0180005221.01.T01:intron 60.0%
GTCATCCGTCGCCGGATCAT+TGG - Chr1:88781368-88781387 None:intergenic 60.0%
TCCTCCATCACCACTGGCGA+CGG - Chr1:88781277-88781296 None:intergenic 60.0%
TGCCACTCCTCCATCACCAC+TGG - Chr1:88781283-88781302 None:intergenic 60.0%
TGGTCCTGGTCCTGGTGTGA+AGG + Chr1:88779086-88779105 MsG0180005221.01.T01:CDS 60.0%
! GCATCCACTGGAGGAAGTGC+TGG - Chr1:88781208-88781227 None:intergenic 60.0%
! TGGCGATGGAGGCATAGAGG+TGG - Chr1:88778184-88778203 None:intergenic 60.0%
!! AGTGCTGGTGGCAGAAGAGG+TGG - Chr1:88781193-88781212 None:intergenic 60.0%
!! GGAAGTGCTGGTGGCAGAAG+AGG - Chr1:88781196-88781215 None:intergenic 60.0%
!! TCCACTGGAGGAAGTGCTGG+TGG - Chr1:88781205-88781224 None:intergenic 60.0%
!! TGGTGGTGGTGGGGGATTCT+CGG - Chr1:88777666-88777685 None:intergenic 60.0%
AAAACGCAGGGCGCGCGAGA+AGG - Chr1:88776925-88776944 None:intergenic 65.0%
AAGTCGGGCGGCGGATCAAG+AGG + Chr1:88779005-88779024 MsG0180005221.01.T01:CDS 65.0%
CAAGGCGGTCCCCTTCGCTA+TGG + Chr1:88778259-88778278 MsG0180005221.01.T01:intron 65.0%
CCTCCATCACCACTGGCGAC+GGG - Chr1:88781276-88781295 None:intergenic 65.0%
CGACGGGGGATCAGACTCAC+CGG - Chr1:88781260-88781279 None:intergenic 65.0%
CTCCATCACCACTGGCGACG+GGG - Chr1:88781275-88781294 None:intergenic 65.0%
GCCACCAGCACTTCCTCCAG+TGG + Chr1:88781201-88781220 MsG0180005221.01.T01:CDS 65.0%
TCCATCACCACTGGCGACGG+GGG - Chr1:88781274-88781293 None:intergenic 65.0%
! CGACGGATGACGGCGGAGTA+AGG + Chr1:88781377-88781396 MsG0180005221.01.T01:CDS 65.0%
! CGGATGACGGCGGAGTAAGG+TGG + Chr1:88781380-88781399 MsG0180005221.01.T01:CDS 65.0%
!! CCCGATGAGAGGGTTGGTCC+TGG + Chr1:88779072-88779091 MsG0180005221.01.T01:CDS 65.0%
!! CGCCAGTGGTGATGGAGGAG+TGG + Chr1:88781278-88781297 MsG0180005221.01.T01:CDS 65.0%
!! GAGAGGGTTGGTCCTGGTCC+TGG + Chr1:88779078-88779097 MsG0180005221.01.T01:CDS 65.0%
ACTCCGCCGTCATCCGTCGC+CGG - Chr1:88781376-88781395 None:intergenic 70.0%
GCGCGAGAAGGCTGCAGGGT+GGG - Chr1:88776913-88776932 None:intergenic 70.0%
GTCTGATCCCCCGTCGCCAG+TGG + Chr1:88781264-88781283 MsG0180005221.01.T01:CDS 70.0%
TCCCCCGTCGCCAGTGGTGA+TGG + Chr1:88781270-88781289 MsG0180005221.01.T01:CDS 70.0%
! GATCCGGCGACGGATGACGG+CGG + Chr1:88781370-88781389 MsG0180005221.01.T01:CDS 70.0%
!! CCCGTCGCCAGTGGTGATGG+AGG + Chr1:88781273-88781292 MsG0180005221.01.T01:CDS 70.0%
AGGGCGCGCGAGAAGGCTGC+AGG - Chr1:88776918-88776937 None:intergenic 75.0%
CGCGCGAGAAGGCTGCAGGG+TGG - Chr1:88776914-88776933 None:intergenic 75.0%
GGGCGCGCGAGAAGGCTGCA+GGG - Chr1:88776917-88776936 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
Chr1 gene 88776328 88781969 88776328 ID=MsG0180005221.01;Name=MsG0180005221.01
Chr1 mRNA 88776328 88781969 88776328 ID=MsG0180005221.01.T01;Parent=MsG0180005221.01;Name=MsG0180005221.01.T01;_AED=0.59;_eAED=0.62;_QI=0|0|0|0.5|1|1|6|0|581
Chr1 exon 88776328 88776511 88776328 ID=MsG0180005221.01.T01:exon:11045;Parent=MsG0180005221.01.T01
Chr1 exon 88777552 88777841 88777552 ID=MsG0180005221.01.T01:exon:11046;Parent=MsG0180005221.01.T01
Chr1 exon 88778300 88778894 88778300 ID=MsG0180005221.01.T01:exon:11047;Parent=MsG0180005221.01.T01
Chr1 exon 88778977 88779123 88778977 ID=MsG0180005221.01.T01:exon:11048;Parent=MsG0180005221.01.T01
Chr1 exon 88781116 88781482 88781116 ID=MsG0180005221.01.T01:exon:11049;Parent=MsG0180005221.01.T01
Chr1 exon 88781807 88781969 88781807 ID=MsG0180005221.01.T01:exon:11050;Parent=MsG0180005221.01.T01
Chr1 CDS 88776328 88776511 88776328 ID=MsG0180005221.01.T01:cds;Parent=MsG0180005221.01.T01
Chr1 CDS 88777552 88777841 88777552 ID=MsG0180005221.01.T01:cds;Parent=MsG0180005221.01.T01
Chr1 CDS 88778300 88778894 88778300 ID=MsG0180005221.01.T01:cds;Parent=MsG0180005221.01.T01
Chr1 CDS 88778977 88779123 88778977 ID=MsG0180005221.01.T01:cds;Parent=MsG0180005221.01.T01
Chr1 CDS 88781116 88781482 88781116 ID=MsG0180005221.01.T01:cds;Parent=MsG0180005221.01.T01
Chr1 CDS 88781807 88781969 88781807 ID=MsG0180005221.01.T01:cds;Parent=MsG0180005221.01.T01
Gene Sequence

>MsG0180005221.01.T01

ATGAAATTTGTTCCTTTTGATCTTGATGTAGCCAAAAGAGAAGTGGAGGGGCATAGCATAGTTTCAATTCAAATCCATAAAAGAAAAAGAGTAACAAACAAAGTACCATATGCATATGCAATCCGTCAAAACTCTCAGGTTGCGGGGCCAATTCTTGGCATTGAGCTTTACTTGATAATTGAAGTTATGGTTGTTCTTGTTGATGCCCCAAATGATGATCCACCTGAGATTGAACCTCCTATTGTGTTGCAGGTTCTTTTACTTGAAGATGTGCATGATTCCGAAAATGCCAAATCCGAGAATCCCCCACCACCACCATCGAAAATTGAAATTTCTTTAGGCGATGCGAAAGTAGAGGATGCTCCTCCTCTTGTTCCTCCTGTTGTACCTCCAAATGTTGTTGTTTGTATTGATCAGCGAGAACATTTTACCACTACACAAAAGTTTGCAACGCGGAATGATTTGTTGGAGTGGGAACAACAGACACAGGGTTCACAGACAAAATCAACAGGGATAAGTAGAAAGAGTGCACGGAAAAGCAACATGTCTCATACTCCTTCTAAGCCAATTCCAAAAAATCTGAAGCCAGTATTGGTTAAAGTCCACATACCATACAAAGACCAAATCCTACTTTGGATGCATGATTTTATTGAAAAGGTTGAGGATGTACCTGGTGATGGCCATTGTGGGTTTCGAGCAGTTGCGGTCCTACGTAACTTGACTATTGATGATCACCAAATAATCTGTTACCACCTTTACAAAGAGCTTGTCGGTGTAGAAAATTCTCGCTATCAGAGGATGATTAATGATAATAGGCGGTATAAAGAGGTCTCAAACGCTCTATCCTTTAGCGGTATTGGGAATGCACCACCGTATAAATGGATGACCATGCTGGATATGGGTTTCCTCATCGCGCAGAAATTCAACCACACGGTTGTTGTGTTGTCCATTGGGAAAGGGCGATCGAAAACTTATTTCCCTCTTTGTGGTCCACCTCCATGTATCGATCGGGTGATGTGTCTGGCATATGTGAATGACAACCATTTTATGGCAGTGGATTTGAAGGATGTCGGATGGCAGATTATAATTAATGAGCTAAGTCGGGCGGCGGATCAAGAGGTGATAGGAGATGAGGAAGAATTGTACATTATTGAAAATCTTGATCCCGATGAGAGGGTTGGTCCTGGTCCTGGTGTGAAGGTTGAAGTGGATGATAGTTTCCAGCCATTGCCATCACCAAGCTCTGGTGATGATCACGATGCGTCACCTCCATCAGTTCACGAGTTCCAACCACCTCTTCTGCCACCAGCACTTCCTCCAGTGGATGCAGAAGGTAGTGGCAATGGTGGGTCTATTTCCGGTGAGTCTGATCCCCCGTCGCCAGTGGTGATGGAGGAGTGGCACAATAGGTCTCCCAAAGCTGCGGCTCCAATATCGGAAAATGGGGTGGGAGGCCATGGCACACCCAATGATCCGGCGACGGATGACGGCGGAGTAAGGTGGTGCACAGTGAGGGACGAAGTGAAGGAGTGTCAGTCCTTTGTCGGTGTCATTAACCAACTAACGGGCTACGTGTGGAAATGCATCCAAAAAGAGAAAGCCCAGGATTGTCTAGAGTCAATCAAGAATGGAGAAGCAGATTTGGTGAACTTAGAAGCAGGTCTTGCTTACATTGCATTCATCAACTATTCAATGAAAGCCATAGCCAATGAGATATATTATGCTATGAAGCTGTTGCAGTTGTAA
Protein sequence

>MsG0180005221.01.T01

MKFVPFDLDVAKREVEGHSIVSIQIHKRKRVTNKVPYAYAIRQNSQVAGPILGIELYLIIEVMVVLVDAPNDDPPEIEPPIVLQVLLLEDVHDSENAKSENPPPPPSKIEISLGDAKVEDAPPLVPPVVPPNVVVCIDQREHFTTTQKFATRNDLLEWEQQTQGSQTKSTGISRKSARKSNMSHTPSKPIPKNLKPVLVKVHIPYKDQILLWMHDFIEKVEDVPGDGHCGFRAVAVLRNLTIDDHQIICYHLYKELVGVENSRYQRMINDNRRYKEVSNALSFSGIGNAPPYKWMTMLDMGFLIAQKFNHTVVVLSIGKGRSKTYFPLCGPPPCIDRVMCLAYVNDNHFMAVDLKDVGWQIIINELSRAADQEVIGDEEELYIIENLDPDERVGPGPGVKVEVDDSFQPLPSPSSGDDHDASPPSVHEFQPPLLPPALPPVDAEGSGNGGSISGESDPPSPVVMEEWHNRSPKAAAPISENGVGGHGTPNDPATDDGGVRWCTVRDEVKECQSFVGVINQLTGYVWKCIQKEKAQDCLESIKNGEADLVNLEAGLAYIAFINYSMKAIANEIYYAMKLLQL*