Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580025970.01.T01 | AES96452.1 | 96.284 | 296 | 11 | 0 | 1 | 296 | 1 | 296 | 0 | 587 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580025970.01.T01 | G7K8A0 | 96.284 | 296 | 11 | 0 | 1 | 296 | 1 | 296 | 0.0 | 587 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180000161.01 | MsG0580025970.01 | 0.835881 | 1.296226e-56 | 1.606289e-53 |
| MsG0180000984.01 | MsG0580025970.01 | 0.884166 | 2.418406e-71 | 1.578921e-67 |
| MsG0180004828.01 | MsG0580025970.01 | 0.827717 | 1.340526e-54 | 1.304700e-51 |
| MsG0180005221.01 | MsG0580025970.01 | 0.807848 | 4.135729e-50 | 2.328201e-47 |
| MsG0180005325.01 | MsG0580025970.01 | 0.820365 | 7.130258e-53 | 5.630320e-50 |
| MsG0180005655.01 | MsG0580025970.01 | 0.804982 | 1.662746e-49 | 8.694580e-47 |
| MsG0180005678.01 | MsG0580025970.01 | 0.868833 | 4.866243e-66 | 1.785787e-62 |
| MsG0180006183.01 | MsG0580025970.01 | 0.827164 | 1.819962e-54 | 1.743023e-51 |
| MsG0180006253.01 | MsG0580025970.01 | 0.816135 | 6.465183e-52 | 4.543331e-49 |
| MsG0280010617.01 | MsG0580025970.01 | 0.811079 | 8.375431e-51 | 5.135668e-48 |
| MsG0380014542.01 | MsG0580025970.01 | 0.800654 | 1.302530e-48 | 6.098292e-46 |
| MsG0380014544.01 | MsG0580025970.01 | 0.867712 | 1.118069e-65 | 3.941273e-62 |
| MsG0480019818.01 | MsG0580025970.01 | 0.805065 | 1.597971e-49 | 8.373580e-47 |
| MsG0480020937.01 | MsG0580025970.01 | 0.815754 | 7.861039e-52 | 5.467341e-49 |
| MsG0480021486.01 | MsG0580025970.01 | 0.850152 | 2.043138e-60 | 3.964814e-57 |
| MsG0480021740.01 | MsG0580025970.01 | 0.857571 | 1.490602e-62 | 3.695602e-59 |
| MsG0480021773.01 | MsG0580025970.01 | 0.808185 | 3.507347e-50 | 1.992171e-47 |
| MsG0480022378.01 | MsG0580025970.01 | 0.812267 | 4.620923e-51 | 2.924663e-48 |
| MsG0480022682.01 | MsG0580025970.01 | 0.845744 | 3.354019e-59 | 5.645582e-56 |
| MsG0480023913.01 | MsG0580025970.01 | 0.858548 | 7.636872e-63 | 1.956281e-59 |
| MsG0480024019.01 | MsG0580025970.01 | 0.838389 | 2.960724e-57 | 3.959565e-54 |
| MsG0580024773.01 | MsG0580025970.01 | 0.832190 | 1.088881e-55 | 1.208095e-52 |
| MsG0580025970.01 | MsG0580026343.01 | 0.815326 | 9.790377e-52 | 6.729258e-49 |
| MsG0580025970.01 | MsG0580028098.01 | 0.804546 | 2.050907e-49 | 1.060370e-46 |
| MsG0580025970.01 | MsG0580030141.01 | 0.856751 | 2.603667e-62 | 6.277398e-59 |
| MsG0580025970.01 | MsG0780038647.01 | 0.903917 | 2.112515e-79 | 3.190088e-75 |
| MsG0580025970.01 | MsG0780040459.01 | 0.838710 | 2.446791e-57 | 3.304807e-54 |
| MsG0580025970.01 | MsG0880041912.01 | 0.819142 | 1.356681e-52 | 1.035385e-49 |
| MsG0580025970.01 | MsG0880042392.01 | 0.805360 | 1.385985e-49 | 7.318121e-47 |
| MsG0580025970.01 | MsG0880043684.01 | 0.836709 | 7.981524e-57 | 1.014075e-53 |
| MsG0580025970.01 | MsG0880043920.01 | 0.864016 | 1.646557e-64 | 5.093415e-61 |
| MsG0580025970.01 | MsG0880044139.01 | 0.832868 | 7.393173e-56 | 8.370400e-53 |
| MsG0580025970.01 | MsG0880045802.01 | 0.852719 | 3.837320e-61 | 8.091851e-58 |
| MsG0580025970.01 | MsG0880045879.01 | 0.849419 | 3.272386e-60 | 6.199478e-57 |
| MsG0580025970.01 | MsG0880047414.01 | 0.837070 | 6.457086e-57 | 8.293196e-54 |
| MsG0380015656.01 | MsG0580025970.01 | 0.811935 | 5.458765e-51 | 3.423598e-48 |
| MsG0380016875.01 | MsG0580025970.01 | 0.823714 | 1.194030e-53 | 1.036301e-50 |
| MsG0380017079.01 | MsG0580025970.01 | 0.810361 | 1.197719e-50 | 7.204924e-48 |
| MsG0380017913.01 | MsG0580025970.01 | 0.828803 | 7.336995e-55 | 7.370229e-52 |
| MsG0380018028.01 | MsG0580025970.01 | 0.826441 | 2.708661e-54 | 2.540506e-51 |
| MsG0480018228.01 | MsG0580025970.01 | 0.811940 | 5.445490e-51 | 3.415810e-48 |
| MsG0480018362.01 | MsG0580025970.01 | 0.863124 | 3.113782e-64 | 9.337315e-61 |
| MsG0280006851.01 | MsG0580025970.01 | 0.840758 | 7.171603e-58 | 1.031731e-54 |
| MsG0280006924.01 | MsG0580025970.01 | 0.845081 | 5.072533e-59 | 8.357341e-56 |
| MsG0280007408.01 | MsG0580025970.01 | 0.882320 | 1.149850e-70 | 6.973483e-67 |
| MsG0280007695.01 | MsG0580025970.01 | 0.854572 | 1.125979e-61 | 2.525776e-58 |
| MsG0280008751.01 | MsG0580025970.01 | 0.830088 | 3.576385e-55 | 3.729843e-52 |
| MsG0280010234.01 | MsG0580025970.01 | 0.800587 | 1.343610e-48 | 6.280007e-46 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580025970.01.T01 | MTR_5g037310 | 96.284 | 296 | 11 | 0 | 1 | 296 | 1 | 296 | 0.0 | 587 |
| MsG0580025970.01.T01 | MTR_5g037310 | 96.284 | 296 | 11 | 0 | 1 | 296 | 1 | 296 | 0.0 | 586 |
| MsG0580025970.01.T01 | MTR_8g090055 | 39.711 | 277 | 141 | 8 | 1 | 266 | 1 | 262 | 1.08e-55 | 182 |
| MsG0580025970.01.T01 | MTR_4g123700 | 31.276 | 243 | 151 | 8 | 27 | 266 | 34 | 263 | 1.24e-25 | 103 |
| MsG0580025970.01.T01 | MTR_4g105550 | 28.364 | 275 | 165 | 11 | 10 | 266 | 15 | 275 | 6.70e-24 | 99.4 |
| MsG0580025970.01.T01 | MTR_4g132450 | 30.000 | 260 | 149 | 11 | 23 | 266 | 34 | 276 | 1.33e-20 | 90.5 |
| MsG0580025970.01.T01 | MTR_2g023970 | 28.244 | 262 | 151 | 12 | 23 | 266 | 20 | 262 | 2.07e-18 | 84.3 |
| MsG0580025970.01.T01 | MTR_7g112440 | 27.404 | 208 | 126 | 9 | 20 | 222 | 15 | 202 | 3.43e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580025970.01.T01 | AT1G10380 | 55.197 | 279 | 115 | 7 | 25 | 296 | 27 | 302 | 5.44e-97 | 288 |
| MsG0580025970.01.T01 | AT1G10380 | 60.241 | 249 | 91 | 6 | 25 | 268 | 27 | 272 | 1.25e-94 | 282 |
| MsG0580025970.01.T01 | AT3G17350 | 33.333 | 246 | 145 | 9 | 27 | 264 | 31 | 265 | 1.03e-24 | 100 |
| MsG0580025970.01.T01 | AT3G17350 | 33.333 | 246 | 145 | 9 | 27 | 264 | 31 | 265 | 1.41e-24 | 100 |
| MsG0580025970.01.T01 | AT5G50290 | 30.147 | 272 | 165 | 11 | 10 | 266 | 5 | 266 | 1.18e-22 | 95.9 |
| MsG0580025970.01.T01 | AT1G11915 | 26.421 | 299 | 181 | 12 | 10 | 288 | 14 | 293 | 3.47e-17 | 80.9 |
Find 69 sgRNAs with CRISPR-Local
Find 104 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCATAGTCAATTGAGGTAAT+AGG | 0.216590 | 5:+28350077 | None:intergenic |
| TTCACATCATCTTATAATAA+TGG | 0.268628 | 5:-28349489 | MsG0580025970.01.T01:CDS |
| ACAATCTACTAAAGCGAATA+TGG | 0.279440 | 5:+28349944 | None:intergenic |
| GTTCTTTGCCACAATTTCTT+TGG | 0.298152 | 5:+28350210 | None:intergenic |
| GTGCTATCATCGAAAGTAAA+AGG | 0.329017 | 5:+28349966 | None:intergenic |
| CTTCAATGCAGTTCATATAC+AGG | 0.342561 | 5:-28349717 | MsG0580025970.01.T01:CDS |
| AATAGGACACAAGAAATAAA+TGG | 0.343228 | 5:+28348987 | None:intergenic |
| CATAGTCAATTGAGGTAATA+GGG | 0.351341 | 5:+28350078 | None:intergenic |
| AAGCGAGGGTCGCCGCAACC+TGG | 0.352039 | 5:+28350161 | None:intergenic |
| GTGATGTTATGTATTCTTGT+AGG | 0.354020 | 5:-28349833 | MsG0580025970.01.T01:CDS |
| AGGAAGTAGGAAAAGGAAAA+TGG | 0.359989 | 5:+28350256 | None:intergenic |
| TTCTTTGGCACATTTGAGAT+TGG | 0.364687 | 5:+28350225 | None:intergenic |
| GATCCTCAAAAGTGGAACTA+TGG | 0.374420 | 5:-28349666 | MsG0580025970.01.T01:CDS |
| GCAAAGGCTTCGGCTTAGAT+TGG | 0.390000 | 5:-28349995 | MsG0580025970.01.T01:CDS |
| TTCGGTAGCGGCCCAGGTTG+CGG | 0.398118 | 5:-28350173 | MsG0580025970.01.T01:CDS |
| AGGTTAATATTAGTACTAAT+AGG | 0.427315 | 5:+28349810 | None:intergenic |
| GTTTATACACCGGTTAATCT+TGG | 0.430829 | 5:-28349768 | MsG0580025970.01.T01:CDS |
| TAAACACAACATGTCGAAAT+CGG | 0.436820 | 5:+28349786 | None:intergenic |
| GCTGCATGTGAAAGGAGCTT+TGG | 0.444173 | 5:-28349591 | MsG0580025970.01.T01:CDS |
| TACCCTTTCGGTAGCGGCCC+AGG | 0.445377 | 5:-28350179 | MsG0580025970.01.T01:CDS |
| TTATTTCTTGTGTCCTATTG+TGG | 0.446874 | 5:-28348983 | MsG0580025970.01.T01:three_prime_UTR |
| AACAAATTGATCCTCAAAAG+TGG | 0.460285 | 5:-28349674 | MsG0580025970.01.T01:CDS |
| GTAGTGGTGTTAATTCCATT+AGG | 0.460938 | 5:+28349522 | None:intergenic |
| GTGAAAACCTTTACAATCCT+AGG | 0.472272 | 5:+28349082 | None:intergenic |
| GAACCTCTCAAGTACCCTTT+CGG | 0.476764 | 5:-28350191 | MsG0580025970.01.T01:CDS |
| AAAGCTGGACCAAGATTAAC+CGG | 0.476906 | 5:+28349759 | None:intergenic |
| TCAAAGAAGGAAGTAGGAAA+AGG | 0.481402 | 5:+28350249 | None:intergenic |
| TTGATTTGCATAGTCAATTG+AGG | 0.482998 | 5:+28350070 | None:intergenic |
| ATTGGATCAAAGAAGGAAGT+AGG | 0.483664 | 5:+28350243 | None:intergenic |
| ATGGTGAGAAGAGGAGGTGA+AGG | 0.485663 | 5:+28350275 | None:intergenic |
| AGCGAGGGTCGCCGCAACCT+GGG | 0.490585 | 5:+28350162 | None:intergenic |
| TGAGAGAATGAGGGAGGACA+AGG | 0.497901 | 5:+28350321 | None:intergenic |
| ATTTGAGATTGGATCAAAGA+AGG | 0.498634 | 5:+28350236 | None:intergenic |
| TGAAGATCCATATCAAAAGC+TGG | 0.499024 | 5:+28349744 | None:intergenic |
| ACCCTACCTAGCAAAGGCTT+CGG | 0.503040 | 5:-28350005 | MsG0580025970.01.T01:CDS |
| TGTTGGCTGCAAGTTATATG+TGG | 0.504485 | 5:+28350134 | None:intergenic |
| ATGATCACCTAGGATTGTAA+AGG | 0.507640 | 5:-28349089 | MsG0580025970.01.T01:three_prime_UTR |
| AGGAAAATGGTGAGAAGAGG+AGG | 0.511730 | 5:+28350269 | None:intergenic |
| ATGAGGGAGGACAAGGAATG+AGG | 0.515161 | 5:+28350328 | None:intergenic |
| AACCTGGGCCGCTACCGAAA+GGG | 0.526652 | 5:+28350177 | None:intergenic |
| CTCAAGTACCCTTTCGGTAG+CGG | 0.533088 | 5:-28350185 | MsG0580025970.01.T01:CDS |
| CAACCTGGGCCGCTACCGAA+AGG | 0.535434 | 5:+28350176 | None:intergenic |
| GCCGAAGCCTTTGCTAGGTA+GGG | 0.540178 | 5:+28350004 | None:intergenic |
| AAATCAAGAAGTTATGATGA+TGG | 0.541719 | 5:-28349897 | MsG0580025970.01.T01:CDS |
| TGTGATTGAGAGAATGAGGG+AGG | 0.542861 | 5:+28350315 | None:intergenic |
| AAAAGGAAAATGGTGAGAAG+AGG | 0.550845 | 5:+28350266 | None:intergenic |
| TAGGCTCATCTTATAAGCAA+TGG | 0.553527 | 5:-28349130 | MsG0580025970.01.T01:exon |
| CAAATGTGCCAAAGAAATTG+TGG | 0.553792 | 5:-28350218 | MsG0580025970.01.T01:CDS |
| TTATATGTGGTTGGAAGCGA+GGG | 0.559135 | 5:+28350147 | None:intergenic |
| TCACATGCAGCACAAGAGCT+AGG | 0.560587 | 5:+28349603 | None:intergenic |
| GACATGTTGTGTTTATACAC+CGG | 0.561125 | 5:-28349778 | MsG0580025970.01.T01:CDS |
| GCTCTTGTGCTGCATGTGAA+AGG | 0.562347 | 5:-28349599 | MsG0580025970.01.T01:CDS |
| GGCTGCAAGTTATATGTGGT+TGG | 0.563811 | 5:+28350138 | None:intergenic |
| GTTATATGTGGTTGGAAGCG+AGG | 0.565909 | 5:+28350146 | None:intergenic |
| GGAGCCTGTGTGTGTTGTGA+AGG | 0.568111 | 5:+28350103 | None:intergenic |
| AGCCGAAGCCTTTGCTAGGT+AGG | 0.568732 | 5:+28350003 | None:intergenic |
| TCTAAGCCGAAGCCTTTGCT+AGG | 0.577620 | 5:+28349999 | None:intergenic |
| TGGTGAGAAGAGGAGGTGAA+GGG | 0.589382 | 5:+28350276 | None:intergenic |
| CAAGAACATGTTGACATGGT+GGG | 0.593775 | 5:+28350029 | None:intergenic |
| CACAACATGTCGAAATCGGA+AGG | 0.597606 | 5:+28349790 | None:intergenic |
| CTCATCTTATAAGCAATGGA+TGG | 0.598526 | 5:-28349126 | MsG0580025970.01.T01:exon |
| CTCACCTTCACAACACACAC+AGG | 0.609375 | 5:-28350107 | MsG0580025970.01.T01:CDS |
| GTCAATTGAGGTAATAGGGT+AGG | 0.619560 | 5:+28350082 | None:intergenic |
| CTACCGAAAGGGTACTTGAG+AGG | 0.634715 | 5:+28350188 | None:intergenic |
| TCTTGTACCCTACCTAGCAA+AGG | 0.635014 | 5:-28350011 | MsG0580025970.01.T01:CDS |
| AATCAAGCTTATGATCACCT+AGG | 0.658302 | 5:-28349099 | MsG0580025970.01.T01:three_prime_UTR |
| ACAAGAACATGTTGACATGG+TGG | 0.661350 | 5:+28350028 | None:intergenic |
| GGTACAAGAACATGTTGACA+TGG | 0.681333 | 5:+28350025 | None:intergenic |
| TGTGAAGAAACAATCTGTAG+TGG | 0.691455 | 5:+28349506 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATATTTTAAAATTATTAT+CGG | - | Chr5:28349960-28349979 | MsG0580025970.01.T01:CDS | 0.0% |
| !! | TATAATAATGGTTATAAAAA+TGG | - | Chr5:28349771-28349790 | MsG0580025970.01.T01:CDS | 10.0% |
| !!! | TAAGATTATTTTTTTTGAAA+AGG | - | Chr5:28349853-28349872 | MsG0580025970.01.T01:CDS | 10.0% |
| !! | TAAAAATGAATGAAAAAAGT+AGG | + | Chr5:28350029-28350048 | None:intergenic | 15.0% |
| !! | AGGTTAATATTAGTACTAAT+AGG | + | Chr5:28349441-28349460 | None:intergenic | 20.0% |
| !! | TTCACATCATCTTATAATAA+TGG | - | Chr5:28349759-28349778 | MsG0580025970.01.T01:CDS | 20.0% |
| !!! | ACACTAAAATTTAAGATTAG+AGG | - | Chr5:28349877-28349896 | MsG0580025970.01.T01:CDS | 20.0% |
| !!! | CACTAAAATTTAAGATTAGA+GGG | - | Chr5:28349878-28349897 | MsG0580025970.01.T01:CDS | 20.0% |
| !!! | TTAAGTGTATGGAATTTTAA+TGG | - | Chr5:28350192-28350211 | MsG0580025970.01.T01:CDS | 20.0% |
| ! | AAATCAAGAAGTTATGATGA+TGG | - | Chr5:28349351-28349370 | MsG0580025970.01.T01:intron | 25.0% |
| ! | AATAGGACACAAGAAATAAA+TGG | + | Chr5:28350264-28350283 | None:intergenic | 25.0% |
| ! | ATGCAATTGACAAATAAGAA+AGG | + | Chr5:28349812-28349831 | None:intergenic | 25.0% |
| ! | TGCAATTGACAAATAAGAAA+GGG | + | Chr5:28349811-28349830 | None:intergenic | 25.0% |
| !!! | GTTTTCACATTTTAAGTGTA+TGG | - | Chr5:28350181-28350200 | MsG0580025970.01.T01:CDS | 25.0% |
| !!! | TCATTTTTAATGACTTGTTC+TGG | - | Chr5:28350040-28350059 | MsG0580025970.01.T01:CDS | 25.0% |
| AACAAATTGATCCTCAAAAG+TGG | - | Chr5:28349574-28349593 | MsG0580025970.01.T01:CDS | 30.0% | |
| ACAATCTACTAAAGCGAATA+TGG | + | Chr5:28349307-28349326 | None:intergenic | 30.0% | |
| CATAGTCAATTGAGGTAATA+GGG | + | Chr5:28349173-28349192 | None:intergenic | 30.0% | |
| GTGATGTTATGTATTCTTGT+AGG | - | Chr5:28349415-28349434 | MsG0580025970.01.T01:intron | 30.0% | |
| TAAACACAACATGTCGAAAT+CGG | + | Chr5:28349465-28349484 | None:intergenic | 30.0% | |
| ! | ATTTGAGATTGGATCAAAGA+AGG | + | Chr5:28349015-28349034 | None:intergenic | 30.0% |
| ! | ATTTTGTGATTGAGAGAATG+AGG | + | Chr5:28348940-28348959 | None:intergenic | 30.0% |
| ! | TATAGAGTACTACACAAACA+CGG | + | Chr5:28350001-28350020 | None:intergenic | 30.0% |
| ! | TTATTTCTTGTGTCCTATTG+TGG | - | Chr5:28350265-28350284 | MsG0580025970.01.T01:CDS | 30.0% |
| ! | TTTTGTGATTGAGAGAATGA+GGG | + | Chr5:28348939-28348958 | None:intergenic | 30.0% |
| ! | TTTTTATGCAACTGTCCTAA+TGG | - | Chr5:28349711-28349730 | MsG0580025970.01.T01:CDS | 30.0% |
| !! | ATTTTGATCACATTGAAGCT+TGG | + | Chr5:28349385-28349404 | None:intergenic | 30.0% |
| !! | TTGATTTGCATAGTCAATTG+AGG | + | Chr5:28349181-28349200 | None:intergenic | 30.0% |
| !!! | AATTTTAATGGATTGCATGG+GGG | - | Chr5:28350204-28350223 | MsG0580025970.01.T01:CDS | 30.0% |
| !!! | GAATTTTAATGGATTGCATG+GGG | - | Chr5:28350203-28350222 | MsG0580025970.01.T01:CDS | 30.0% |
| !!! | GGAATTTTAATGGATTGCAT+GGG | - | Chr5:28350202-28350221 | MsG0580025970.01.T01:CDS | 30.0% |
| !!! | TGGAATTTTAATGGATTGCA+TGG | - | Chr5:28350201-28350220 | MsG0580025970.01.T01:CDS | 30.0% |
| AAAAGGAAAATGGTGAGAAG+AGG | + | Chr5:28348985-28349004 | None:intergenic | 35.0% | |
| AATCAAGCTTATGATCACCT+AGG | - | Chr5:28350149-28350168 | MsG0580025970.01.T01:CDS | 35.0% | |
| AGCAAACCCTGAAAACATTA+AGG | + | Chr5:28350066-28350085 | None:intergenic | 35.0% | |
| AGGAAGTAGGAAAAGGAAAA+TGG | + | Chr5:28348995-28349014 | None:intergenic | 35.0% | |
| ATGATCACCTAGGATTGTAA+AGG | - | Chr5:28350159-28350178 | MsG0580025970.01.T01:CDS | 35.0% | |
| ATTGAATGTAACAACCGTGT+TGG | + | Chr5:28349940-28349959 | None:intergenic | 35.0% | |
| ATTGGATCAAAGAAGGAAGT+AGG | + | Chr5:28349008-28349027 | None:intergenic | 35.0% | |
| CAAATGTGCCAAAGAAATTG+TGG | - | Chr5:28349030-28349049 | MsG0580025970.01.T01:three_prime_UTR | 35.0% | |
| CTCATCTTATAAGCAATGGA+TGG | - | Chr5:28350122-28350141 | MsG0580025970.01.T01:CDS | 35.0% | |
| CTTCAATGCAGTTCATATAC+AGG | - | Chr5:28349531-28349550 | MsG0580025970.01.T01:CDS | 35.0% | |
| GACATGTTGTGTTTATACAC+CGG | - | Chr5:28349470-28349489 | MsG0580025970.01.T01:intron | 35.0% | |
| GCATAGTCAATTGAGGTAAT+AGG | + | Chr5:28349174-28349193 | None:intergenic | 35.0% | |
| GGTAAAGCAATGTTTGTATG+TGG | + | Chr5:28348902-28348921 | None:intergenic | 35.0% | |
| GTGAAAACCTTTACAATCCT+AGG | + | Chr5:28350169-28350188 | None:intergenic | 35.0% | |
| GTGCTATCATCGAAAGTAAA+AGG | + | Chr5:28349285-28349304 | None:intergenic | 35.0% | |
| GTTCTTTGCCACAATTTCTT+TGG | + | Chr5:28349041-28349060 | None:intergenic | 35.0% | |
| TAGGCTCATCTTATAAGCAA+TGG | - | Chr5:28350118-28350137 | MsG0580025970.01.T01:CDS | 35.0% | |
| TCAAAGAAGGAAGTAGGAAA+AGG | + | Chr5:28349002-28349021 | None:intergenic | 35.0% | |
| TGAAGATCCATATCAAAAGC+TGG | + | Chr5:28349507-28349526 | None:intergenic | 35.0% | |
| TGTGAAGAAACAATCTGTAG+TGG | + | Chr5:28349745-28349764 | None:intergenic | 35.0% | |
| ! | CTTTTGCATGGTCTTTGATT+AGG | - | Chr5:28350099-28350118 | MsG0580025970.01.T01:CDS | 35.0% |
| ! | GTAGTGGTGTTAATTCCATT+AGG | + | Chr5:28349729-28349748 | None:intergenic | 35.0% |
| ! | GTTTATACACCGGTTAATCT+TGG | - | Chr5:28349480-28349499 | MsG0580025970.01.T01:CDS | 35.0% |
| ! | TTCTTTGGCACATTTGAGAT+TGG | + | Chr5:28349026-28349045 | None:intergenic | 35.0% |
| ! | TTGTGAAGGTGAGTTTTTGT+TGG | + | Chr5:28349134-28349153 | None:intergenic | 35.0% |
| !! | ATTATTATCGGTGTTGTGTC+AGG | - | Chr5:28349972-28349991 | MsG0580025970.01.T01:CDS | 35.0% |
| !! | ATTCCATAGTTCCACTTTTG+AGG | + | Chr5:28349588-28349607 | None:intergenic | 35.0% |
| !! | GGTTGATATATGCTTTTGCA+TGG | - | Chr5:28350087-28350106 | MsG0580025970.01.T01:CDS | 35.0% |
| !! | TAATGTTTTCAGGGTTTGCT+TGG | - | Chr5:28350066-28350085 | MsG0580025970.01.T01:CDS | 35.0% |
| !!! | TTCTGGCCTTAATGTTTTCA+GGG | - | Chr5:28350057-28350076 | MsG0580025970.01.T01:CDS | 35.0% |
| AAAGCTGGACCAAGATTAAC+CGG | + | Chr5:28349492-28349511 | None:intergenic | 40.0% | |
| ACAAGAACATGTTGACATGG+TGG | + | Chr5:28349223-28349242 | None:intergenic | 40.0% | |
| ACACTGATATGACACCAACA+CGG | - | Chr5:28349923-28349942 | MsG0580025970.01.T01:CDS | 40.0% | |
| CAAGAACATGTTGACATGGT+GGG | + | Chr5:28349222-28349241 | None:intergenic | 40.0% | |
| GATCCTCAAAAGTGGAACTA+TGG | - | Chr5:28349582-28349601 | MsG0580025970.01.T01:CDS | 40.0% | |
| GGTACAAGAACATGTTGACA+TGG | + | Chr5:28349226-28349245 | None:intergenic | 40.0% | |
| GTCAATTGAGGTAATAGGGT+AGG | + | Chr5:28349169-28349188 | None:intergenic | 40.0% | |
| TTATATGTGGTTGGAAGCGA+GGG | + | Chr5:28349104-28349123 | None:intergenic | 40.0% | |
| ! | GTGCACACATTTTCCACAAT+AGG | + | Chr5:28350281-28350300 | None:intergenic | 40.0% |
| ! | TCTTGGTCCAGCTTTTGATA+TGG | - | Chr5:28349497-28349516 | MsG0580025970.01.T01:CDS | 40.0% |
| ! | TGTTGGCTGCAAGTTATATG+TGG | + | Chr5:28349117-28349136 | None:intergenic | 40.0% |
| !!! | GAAAGGAGCTTTGGATTTTG+TGG | - | Chr5:28349666-28349685 | MsG0580025970.01.T01:CDS | 40.0% |
| !!! | GTTCTGGCCTTAATGTTTTC+AGG | - | Chr5:28350056-28350075 | MsG0580025970.01.T01:CDS | 40.0% |
| AGGAAAATGGTGAGAAGAGG+AGG | + | Chr5:28348982-28349001 | None:intergenic | 45.0% | |
| CACAACATGTCGAAATCGGA+AGG | + | Chr5:28349461-28349480 | None:intergenic | 45.0% | |
| GAACCTCTCAAGTACCCTTT+CGG | - | Chr5:28349057-28349076 | MsG0580025970.01.T01:three_prime_UTR | 45.0% | |
| GGCTGCAAGTTATATGTGGT+TGG | + | Chr5:28349113-28349132 | None:intergenic | 45.0% | |
| GTTATATGTGGTTGGAAGCG+AGG | + | Chr5:28349105-28349124 | None:intergenic | 45.0% | |
| TCTTGTACCCTACCTAGCAA+AGG | - | Chr5:28349237-28349256 | MsG0580025970.01.T01:intron | 45.0% | |
| TGTGATTGAGAGAATGAGGG+AGG | + | Chr5:28348936-28348955 | None:intergenic | 45.0% | |
| ACCCTACCTAGCAAAGGCTT+CGG | - | Chr5:28349243-28349262 | MsG0580025970.01.T01:intron | 50.0% | |
| ATGAGGGAGGACAAGGAATG+AGG | + | Chr5:28348923-28348942 | None:intergenic | 50.0% | |
| ATGGTGAGAAGAGGAGGTGA+AGG | + | Chr5:28348976-28348995 | None:intergenic | 50.0% | |
| CTCAAGTACCCTTTCGGTAG+CGG | - | Chr5:28349063-28349082 | MsG0580025970.01.T01:three_prime_UTR | 50.0% | |
| CTCACCTTCACAACACACAC+AGG | - | Chr5:28349141-28349160 | MsG0580025970.01.T01:CDS | 50.0% | |
| GCAAAGGCTTCGGCTTAGAT+TGG | - | Chr5:28349253-28349272 | MsG0580025970.01.T01:intron | 50.0% | |
| GCTCTTGTGCTGCATGTGAA+AGG | - | Chr5:28349649-28349668 | MsG0580025970.01.T01:CDS | 50.0% | |
| GCTGCATGTGAAAGGAGCTT+TGG | - | Chr5:28349657-28349676 | MsG0580025970.01.T01:CDS | 50.0% | |
| TCACATGCAGCACAAGAGCT+AGG | + | Chr5:28349648-28349667 | None:intergenic | 50.0% | |
| TCTAAGCCGAAGCCTTTGCT+AGG | + | Chr5:28349252-28349271 | None:intergenic | 50.0% | |
| TGAGAGAATGAGGGAGGACA+AGG | + | Chr5:28348930-28348949 | None:intergenic | 50.0% | |
| TGGTGAGAAGAGGAGGTGAA+GGG | + | Chr5:28348975-28348994 | None:intergenic | 50.0% | |
| !! | CTACCGAAAGGGTACTTGAG+AGG | + | Chr5:28349063-28349082 | None:intergenic | 50.0% |
| AGCCGAAGCCTTTGCTAGGT+AGG | + | Chr5:28349248-28349267 | None:intergenic | 55.0% | |
| GCCGAAGCCTTTGCTAGGTA+GGG | + | Chr5:28349247-28349266 | None:intergenic | 55.0% | |
| GGAGCCTGTGTGTGTTGTGA+AGG | + | Chr5:28349148-28349167 | None:intergenic | 55.0% | |
| AACCTGGGCCGCTACCGAAA+GGG | + | Chr5:28349074-28349093 | None:intergenic | 60.0% | |
| CAACCTGGGCCGCTACCGAA+AGG | + | Chr5:28349075-28349094 | None:intergenic | 65.0% | |
| ! | TACCCTTTCGGTAGCGGCCC+AGG | - | Chr5:28349069-28349088 | MsG0580025970.01.T01:three_prime_UTR | 65.0% |
| ! | TTCGGTAGCGGCCCAGGTTG+CGG | - | Chr5:28349075-28349094 | MsG0580025970.01.T01:three_prime_UTR | 65.0% |
| AAGCGAGGGTCGCCGCAACC+TGG | + | Chr5:28349090-28349109 | None:intergenic | 70.0% | |
| AGCGAGGGTCGCCGCAACCT+GGG | + | Chr5:28349089-28349108 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr5 | gene | 28348901 | 28350369 | 28348901 | ID=MsG0580025970.01;Name=MsG0580025970.01 |
| Chr5 | mRNA | 28348901 | 28350369 | 28348901 | ID=MsG0580025970.01.T01;Parent=MsG0580025970.01;Name=MsG0580025970.01.T01;_AED=0.13;_eAED=0.13;_QI=57|1|1|1|1|1|2|236|296 |
| Chr5 | exon | 28348901 | 28349192 | 28348901 | ID=MsG0580025970.01.T01:exon:7498;Parent=MsG0580025970.01.T01 |
| Chr5 | exon | 28349478 | 28350369 | 28349478 | ID=MsG0580025970.01.T01:exon:7497;Parent=MsG0580025970.01.T01 |
| Chr5 | five_prime_UTR | 28350313 | 28350369 | 28350313 | ID=MsG0580025970.01.T01:five_prime_utr;Parent=MsG0580025970.01.T01 |
| Chr5 | CDS | 28349478 | 28350312 | 28349478 | ID=MsG0580025970.01.T01:cds;Parent=MsG0580025970.01.T01 |
| Chr5 | CDS | 28349137 | 28349192 | 28349137 | ID=MsG0580025970.01.T01:cds;Parent=MsG0580025970.01.T01 |
| Chr5 | three_prime_UTR | 28348901 | 28349136 | 28348901 | ID=MsG0580025970.01.T01:three_prime_utr;Parent=MsG0580025970.01.T01 |
| Gene Sequence |
| Protein sequence |
