AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380017362.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017362.01.T01 MTR_3g105950 97.694 477 1 1 1 477 1 467 0.0 959
MsG0380017362.01.T01 MTR_1g014080 85.000 480 59 4 1 478 1 469 0.0 818
MsG0380017362.01.T01 MTR_8g016270 69.767 473 131 3 6 477 18 479 0.0 681
MsG0380017362.01.T01 MTR_5g098730 42.455 497 223 13 22 482 33 502 2.48e-119 364
MsG0380017362.01.T01 MTR_3g082140 41.529 484 238 12 22 478 27 492 6.03e-117 358
MsG0380017362.01.T01 MTR_0204s0010 46.575 292 138 4 201 482 2 285 1.20e-84 268
MsG0380017362.01.T01 MTR_7g060560 87.288 118 15 0 101 218 274 391 4.47e-65 215
MsG0380017362.01.T01 MTR_3g090510 81.967 122 20 1 97 218 275 394 6.35e-62 207
MsG0380017362.01.T01 MTR_6g074910 28.966 435 255 7 46 475 31 416 2.66e-59 205
MsG0380017362.01.T01 MTR_5g077170 29.762 420 243 7 65 480 52 423 2.08e-57 200
MsG0380017362.01.T01 MTR_2g006300 31.507 438 236 8 47 475 29 411 1.20e-54 192
MsG0380017362.01.T01 MTR_8g088730 30.909 440 238 9 47 475 33 417 1.29e-52 187
MsG0380017362.01.T01 MTR_4g053270 29.291 437 254 8 46 477 34 420 7.65e-48 174
MsG0380017362.01.T01 MTR_5g014340 79.439 107 17 1 103 209 1 102 4.66e-44 155
MsG0380017362.01.T01 MTR_4g116770 38.756 209 101 7 1 203 1 188 9.35e-32 129
MsG0380017362.01.T01 MTR_0249s0060 85.294 68 10 0 103 170 1 68 3.36e-28 107
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017362.01.T01 AT5G25100 78.645 487 84 4 1 478 1 476 0.0 766
MsG0380017362.01.T01 AT5G25100 78.645 487 91 4 1 478 1 483 0.0 765
MsG0380017362.01.T01 AT5G10840 77.301 489 89 4 1 478 3 480 0.0 758
MsG0380017362.01.T01 AT2G24170 75.833 480 103 4 1 478 1 469 0.0 750
MsG0380017362.01.T01 AT2G24170 75.442 452 98 4 1 450 1 441 0.0 703
MsG0380017362.01.T01 AT3G13772 70.897 457 121 3 22 477 27 472 0.0 676
MsG0380017362.01.T01 AT1G55130 68.763 477 135 4 4 477 3 468 0.0 671
MsG0380017362.01.T01 AT5G35160 41.700 506 225 11 13 477 14 490 7.95e-124 376
MsG0380017362.01.T01 AT5G35160 41.700 506 225 11 13 477 14 490 7.95e-124 376
MsG0380017362.01.T01 AT5G35160 41.700 506 225 11 13 477 14 490 7.95e-124 376
MsG0380017362.01.T01 AT4G12650 41.529 484 232 10 22 475 20 482 1.85e-116 357
MsG0380017362.01.T01 AT5G35160 39.010 505 212 11 13 477 14 462 1.60e-107 333
MsG0380017362.01.T01 AT2G01970 30.046 436 250 7 46 475 34 420 1.93e-65 222
MsG0380017362.01.T01 AT1G14670 30.046 436 250 7 46 475 34 420 8.90e-65 220
MsG0380017362.01.T01 AT5G37310 29.356 419 236 7 65 475 55 421 9.32e-60 206
MsG0380017362.01.T01 AT5G37310 29.356 419 236 7 65 475 55 421 9.32e-60 206
MsG0380017362.01.T01 AT1G08350 29.345 443 255 10 40 475 26 417 7.60e-57 197
MsG0380017362.01.T01 AT1G08350 29.345 443 255 10 40 475 26 417 2.42e-56 197
MsG0380017362.01.T01 AT1G08350 29.345 443 255 10 40 475 26 417 2.42e-56 197
MsG0380017362.01.T01 AT1G10950 32.407 432 228 10 53 475 41 417 4.39e-56 196
MsG0380017362.01.T01 AT1G08350 28.756 386 218 9 96 475 2 336 1.77e-46 169

Find 176 sgRNAs with CRISPR-Local

Find 297 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGCTCCACAAGATTTCTTTA+AGG 0.160692 3:-95335500 MsG0380017362.01.T01:intron
TCTCTTCTTGGGCTTCTTCC+TGG 0.162911 3:+95333123 None:intergenic
ATGATTGTTCTCTTCCTTTC+GGG 0.199038 3:-95333212 MsG0380017362.01.T01:CDS
GCTTGAATGCCTGGAATATC+TGG 0.230008 3:-95331867 MsG0380017362.01.T01:three_prime_UTR
GCTTTGATGGTTTGTCTAAA+AGG 0.239038 3:-95331957 MsG0380017362.01.T01:three_prime_UTR
AACACGAGTATGATGGTAAA+TGG 0.258508 3:-95333770 MsG0380017362.01.T01:CDS
GACAGCCATGCTCTTGGTTT+GGG 0.261532 3:-95332937 MsG0380017362.01.T01:CDS
CAATAGAGAACCAGTGAATT+TGG 0.271157 3:+95333246 None:intergenic
CACATATGATGTTGATTTCC+AGG 0.271731 3:-95333643 MsG0380017362.01.T01:intron
AATGATTGTTCTCTTCCTTT+CGG 0.275069 3:-95333213 MsG0380017362.01.T01:CDS
CTCTTCTTGGGCTTCTTCCT+GGG 0.277059 3:+95333124 None:intergenic
TTGTCCATGGGGATGTATTT+AGG 0.282833 3:-95333088 MsG0380017362.01.T01:CDS
TATATTAAATGCTCTCATTT+GGG 0.284478 3:-95332787 MsG0380017362.01.T01:CDS
TGACAGCCATGCTCTTGGTT+TGG 0.284901 3:-95332938 MsG0380017362.01.T01:CDS
GCTTCCAACCAGTCTCTTCT+TGG 0.285153 3:+95333111 None:intergenic
TCGTATAAATACAGCTTTGA+TGG 0.289182 3:-95331970 MsG0380017362.01.T01:three_prime_UTR
GTCATCATTCATTAGCAAAT+AGG 0.315280 3:+95333268 None:intergenic
TTGGATTCTATGCATGCTTT+TGG 0.316198 3:-95332208 MsG0380017362.01.T01:three_prime_UTR
GCTTTGAGGTTAAGCCATTC+AGG 0.317785 3:-95333909 MsG0380017362.01.T01:intron
TTATATTAAATGCTCTCATT+TGG 0.322327 3:-95332788 MsG0380017362.01.T01:CDS
ACCATGATATTTGCTATCCT+TGG 0.330022 3:-95332993 MsG0380017362.01.T01:CDS
TTCACAGGATTCTCAATTGC+AGG 0.336074 3:+95332652 None:intergenic
GCCTGCTCAGGGATCTGCCT+TGG 0.337693 3:+95332616 None:intergenic
CTTCCAACCAGTCTCTTCTT+GGG 0.349041 3:+95333112 None:intergenic
TTCATGTACCAGGCCTGCTC+AGG 0.350610 3:+95332604 None:intergenic
TCTTTATCCTCACCTCAATC+TGG 0.357240 3:-95332519 MsG0380017362.01.T01:three_prime_UTR
TTCTTTCGATACTTGTTTGT+CGG 0.358949 3:+95335632 None:intergenic
TGGCGGTCATACCTTACTTC+TGG 0.362279 3:-95332370 MsG0380017362.01.T01:three_prime_UTR
TTTGTGGTTACCGGTACTAT+TGG 0.362280 3:-95332227 MsG0380017362.01.T01:three_prime_UTR
CCCACAACATTACACATTTG+TGG 0.366682 3:+95334384 None:intergenic
AGTTATAGCAAGTAATGGTT+TGG 0.370802 3:-95332148 MsG0380017362.01.T01:three_prime_UTR
GCTTTCTCCTTCTACCTTCC+CGG 0.371736 3:-95335526 MsG0380017362.01.T01:CDS
GGTTCCTCTCTCCTTCAAAC+CGG 0.375085 3:-95332971 MsG0380017362.01.T01:CDS
AATCTACTATAGTTATTAGA+TGG 0.376375 3:-95332122 MsG0380017362.01.T01:three_prime_UTR
GATCATGGTATTCCAAAGTT+TGG 0.377894 3:-95331778 MsG0380017362.01.T01:three_prime_UTR
GCTGTATTTATACGAGTTAA+CGG 0.387728 3:+95331978 None:intergenic
AGGATAGTGCAGAAAATCTT+GGG 0.390517 3:-95334716 MsG0380017362.01.T01:CDS
CCTGCTCAGGGATCTGCCTT+GGG 0.397639 3:+95332617 None:intergenic
CTGTGTGTTTATGTTGGAAC+AGG 0.398214 3:-95333044 MsG0380017362.01.T01:CDS
CATGTATCCAAAGTAAAATA+TGG 0.398933 3:+95332270 None:intergenic
CAAATTTGAGCTTGAATGCC+TGG 0.399889 3:-95331876 MsG0380017362.01.T01:three_prime_UTR
CACAGCAAATCTGAGTTGTT+AGG 0.400145 3:+95333062 None:intergenic
AATAAAATGAGTACGGAAGC+TGG 0.403462 3:+95334769 None:intergenic
TGCTAGAATCGTGGGCTTTG+AGG 0.404094 3:-95333923 MsG0380017362.01.T01:CDS
GTTATAGCAAGTAATGGTTT+GGG 0.405378 3:-95332147 MsG0380017362.01.T01:three_prime_UTR
ATTTATGTTGGGCCAAACTT+TGG 0.409513 3:+95331766 None:intergenic
CCATGATATTTGCTATCCTT+GGG 0.409788 3:-95332992 MsG0380017362.01.T01:CDS
CTTTAGTTGTTCCCATAAAA+CGG 0.410146 3:-95334175 MsG0380017362.01.T01:CDS
TGTTCTCTTCCTTTCGGGCA+TGG 0.411830 3:-95333207 MsG0380017362.01.T01:CDS
TCATCTGGAGCTGTGCCATT+TGG 0.418785 3:-95332756 MsG0380017362.01.T01:CDS
CAGCTTTGTGATTTCAAGCT+TGG 0.419934 3:+95332300 None:intergenic
CAGGATAGTGCAGAAAATCT+TGG 0.422003 3:-95334717 MsG0380017362.01.T01:CDS
AGTAATCCTCACTGCACAAC+TGG 0.425366 3:+95332401 None:intergenic
CTTTGATGGTTTGTCTAAAA+GGG 0.428420 3:-95331956 MsG0380017362.01.T01:three_prime_UTR
ATTTGGTACAATGTTTGCTC+TGG 0.433667 3:-95332739 MsG0380017362.01.T01:CDS
GTTCCTCTCTCCTTCAAACC+GGG 0.434696 3:-95332970 MsG0380017362.01.T01:CDS
ACAGCAAATCTGAGTTGTTA+GGG 0.443885 3:+95333063 None:intergenic
AGCGACGCCGGGAAGGTAGA+AGG 0.446747 3:+95335519 None:intergenic
GACTCAAAGGGCAGTATACC+GGG 0.448506 3:-95334109 MsG0380017362.01.T01:CDS
GCTCATGACAGCCATGCTCT+TGG 0.449410 3:-95332943 MsG0380017362.01.T01:CDS
AATTCAAAATTGTATAGAAT+AGG 0.452259 3:+95332042 None:intergenic
CATTGAAAATTCACTATATG+TGG 0.454070 3:-95334673 MsG0380017362.01.T01:intron
GGTTTCCATGTTGGACTCAA+AGG 0.456598 3:-95334122 MsG0380017362.01.T01:CDS
GGCAGATCCCTGAGCAGGCC+TGG 0.457305 3:-95332612 MsG0380017362.01.T01:three_prime_UTR
CACATCTCTATGATACTTGA+CGG 0.457417 3:+95333957 None:intergenic
TCCCATAAAACGGAATGATC+AGG 0.460700 3:-95334165 MsG0380017362.01.T01:CDS
AAAATGACAGAGACAATTGC+AGG 0.461385 3:+95332813 None:intergenic
TATCAGCTTGGTTTCCATGT+TGG 0.466494 3:-95334131 MsG0380017362.01.T01:CDS
TTGCTCTCTTCAACTTCTTG+AGG 0.468169 3:+95333678 None:intergenic
AGAAGATCAATGACGAGTAT+CGG 0.469743 3:-95334320 MsG0380017362.01.T01:CDS
TAGTCCTCTCCTTCTGTTGG+CGG 0.469775 3:-95335752 MsG0380017362.01.T01:five_prime_UTR
GGACTCAAAGGGCAGTATAC+CGG 0.471498 3:-95334110 MsG0380017362.01.T01:CDS
GAAGATCAATGACGAGTATC+GGG 0.473535 3:-95334319 MsG0380017362.01.T01:CDS
AGAAGGAGAAAGCGGTGTGA+AGG 0.477134 3:+95335536 None:intergenic
ATATATTTGCAGTATGTCTT+CGG 0.477711 3:-95331916 MsG0380017362.01.T01:three_prime_UTR
AGCTAAAACCCAGATATTCC+AGG 0.478086 3:+95331858 None:intergenic
GAAATCTTGTGGAGCGACGC+CGG 0.479883 3:+95335507 None:intergenic
GATTTGCTGTGTGTTTATGT+TGG 0.480715 3:-95333050 MsG0380017362.01.T01:CDS
TCTCTCCTTCAAACCGGGGT+GGG 0.482513 3:-95332965 MsG0380017362.01.T01:CDS
ATGAGCCCACCCCGGTTTGA+AGG 0.482813 3:+95332960 None:intergenic
GAGGGTCACATGTTGTCAAA+CGG 0.488799 3:+95333733 None:intergenic
GTTTCCATGTTGGACTCAAA+GGG 0.490076 3:-95334121 MsG0380017362.01.T01:CDS
AGGGTCACATGTTGTCAAAC+GGG 0.490682 3:+95333734 None:intergenic
ACACGAGTATGATGGTAAAT+GGG 0.490956 3:-95333769 MsG0380017362.01.T01:CDS
AGAATGTTGCATAAAGAAAG+AGG 0.493377 3:+95332332 None:intergenic
TAACTGTATCAGTTTGCAAC+CGG 0.494209 3:-95335782 MsG0380017362.01.T01:five_prime_UTR
CCAATCAAAACAGAGAAGGC+TGG 0.495505 3:+95332580 None:intergenic
GGAAGTGAATAAAATGAGTA+CGG 0.496741 3:+95334762 None:intergenic
ACAAACCGTGCAATCAAAGT+TGG 0.510541 3:+95335179 None:intergenic
AAATCTTGTGGAGCGACGCC+GGG 0.513081 3:+95335508 None:intergenic
GAAGGCTGGGTTCATGTACC+AGG 0.517535 3:+95332594 None:intergenic
ACTGGTTGGAAGCTTGTCCA+TGG 0.517914 3:-95333101 MsG0380017362.01.T01:CDS
GATTCTACCGTCTATCAGCT+TGG 0.519977 3:-95334143 MsG0380017362.01.T01:CDS
TGGTGAAGGAAGTTTGTGTA+AGG 0.520593 3:-95332102 MsG0380017362.01.T01:three_prime_UTR
TGATTAGTTATAGCAAGTAA+TGG 0.522563 3:-95332153 MsG0380017362.01.T01:three_prime_UTR
CTCTCTCCTTCAAACCGGGG+TGG 0.526606 3:-95332966 MsG0380017362.01.T01:CDS
AGAGCAAACATTGTACCAAA+TGG 0.527636 3:+95332741 None:intergenic
CCCAAGGCAGATCCCTGAGC+AGG 0.531266 3:-95332617 MsG0380017362.01.T01:three_prime_UTR
CCCAAGGATAGCAAATATCA+TGG 0.533552 3:+95332992 None:intergenic
AAGCCCAAGAAGAGACTGGT+TGG 0.534521 3:-95333115 MsG0380017362.01.T01:CDS
TTTAGCCAACTTTGATTGCA+CGG 0.537621 3:-95335184 MsG0380017362.01.T01:intron
CTTGAATGCCTGGAATATCT+GGG 0.541428 3:-95331866 MsG0380017362.01.T01:three_prime_UTR
CAATCAAAACAGAGAAGGCT+GGG 0.541967 3:+95332581 None:intergenic
GTATAACGAGCTTGAGACCC+AGG 0.542211 3:-95333141 MsG0380017362.01.T01:CDS
ATATTAAATGCTCTCATTTG+GGG 0.542556 3:-95332786 MsG0380017362.01.T01:CDS
GCCACAAATGTGTAATGTTG+TGG 0.542830 3:-95334385 MsG0380017362.01.T01:CDS
CTGGTTGGAAGCTTGTCCAT+GGG 0.544476 3:-95333100 MsG0380017362.01.T01:CDS
TCGTCGTCGCCGCCAACAGA+AGG 0.546781 3:+95335743 None:intergenic
TGCATAGAATCCAATAGTAC+CGG 0.547684 3:+95332217 None:intergenic
GTGCGGAAGAACCAGAAGTA+AGG 0.547713 3:+95332359 None:intergenic
CGCTTGTACAAAATGTTCAA+AGG 0.556072 3:-95332879 MsG0380017362.01.T01:CDS
TCAAGAAGTTGAAGAGAGCA+AGG 0.556425 3:-95333676 MsG0380017362.01.T01:CDS
AATTAGTCCTCTCCTTCTGT+TGG 0.557666 3:-95335755 MsG0380017362.01.T01:five_prime_UTR
ACTGAATCTGCTAGAATCGT+GGG 0.559429 3:-95333931 MsG0380017362.01.T01:CDS
CAACGATTAGTTGAGGATAA+CGG 0.562302 3:+95335696 None:intergenic
ATAAAATGAGTACGGAAGCT+GGG 0.562743 3:+95334770 None:intergenic
ATGTGAAGTGGGCTTCAAGA+TGG 0.563049 3:-95333295 MsG0380017362.01.T01:CDS
GGAACAAGGTTGCAGTCCTG+AGG 0.563341 3:+95332835 None:intergenic
CAAGCTTGAAATCACAAAGC+TGG 0.563454 3:-95332299 MsG0380017362.01.T01:three_prime_UTR
CGGTAAATGCCAAATGATTG+TGG 0.563495 3:+95333977 None:intergenic
TCATGTACCAGGCCTGCTCA+GGG 0.566599 3:+95332605 None:intergenic
TCAATGAAAACAGCTCCAAA+TGG 0.567404 3:+95332547 None:intergenic
AAACTGATTCAACCAGATTG+AGG 0.568595 3:+95332507 None:intergenic
AACTGAATCTGCTAGAATCG+TGG 0.569950 3:-95333932 MsG0380017362.01.T01:CDS
GAAGAAGCCCAAGAAGAGAC+TGG 0.572886 3:-95333119 MsG0380017362.01.T01:CDS
TTATGGGAACAACTAAAGGA+AGG 0.576141 3:+95334180 None:intergenic
TGAATGATGACCAAATTCAC+TGG 0.577066 3:-95333256 MsG0380017362.01.T01:CDS
CCACAAATGTGTAATGTTGT+GGG 0.579438 3:-95334384 MsG0380017362.01.T01:CDS
GTGAGGATTACTTGTGGTGG+TGG 0.581791 3:-95332390 MsG0380017362.01.T01:three_prime_UTR
AATCTTGGGGAAGTTCTTCG+TGG 0.582702 3:-95334702 MsG0380017362.01.T01:CDS
AGTACCTTAAAGAAATCTTG+TGG 0.582843 3:+95335496 None:intergenic
CTTGTGGAGCGACGCCGGGA+AGG 0.583502 3:+95335512 None:intergenic
AGAGACAATTGCAGGGAACA+AGG 0.584334 3:+95332821 None:intergenic
CGTTATACTTTGCAATGTCA+CGG 0.586779 3:+95333156 None:intergenic
AGGATTACTTGTGGTGGTGG+CGG 0.591655 3:-95332387 MsG0380017362.01.T01:three_prime_UTR
ACAACTGTGTGCTTAGCATG+AGG 0.593523 3:+95333714 None:intergenic
GAACAAGGTTGCAGTCCTGA+GGG 0.599617 3:+95332836 None:intergenic
CAACTGTGTGCTTAGCATGA+GGG 0.605991 3:+95333715 None:intergenic
AGTGTTAAACACGAGTATGA+TGG 0.607329 3:-95333777 MsG0380017362.01.T01:CDS
GAATAGGTTACACGTGCACA+TGG 0.608034 3:+95332058 None:intergenic
TGTGAAGTGGGCTTCAAGAT+GGG 0.611136 3:-95333294 MsG0380017362.01.T01:CDS
AGTGGAAAAGAATTGCCCTC+AGG 0.612537 3:-95332851 MsG0380017362.01.T01:CDS
GAAAACCCAAACCAAGAGCA+TGG 0.614652 3:+95332932 None:intergenic
TCATTGCCACCATGCCCGAA+AGG 0.619231 3:+95333198 None:intergenic
TTTCAGCACAAGTGACAACA+AGG 0.619677 3:+95332446 None:intergenic
CTATAGTTATTAGATGGTGA+AGG 0.620310 3:-95332116 MsG0380017362.01.T01:three_prime_UTR
TGCAGGAGAGTGATGTGAAG+TGG 0.630793 3:-95333307 MsG0380017362.01.T01:intron
GTCGCCGCCAACAGAAGGAG+AGG 0.631111 3:+95335748 None:intergenic
CTACTTCCAGTTGTGCAGTG+AGG 0.631692 3:-95332407 MsG0380017362.01.T01:three_prime_UTR
ATGGAAACCAAGCTGATAGA+CGG 0.633306 3:+95334136 None:intergenic
TGAAAACAAACAAAATCCCA+AGG 0.637171 3:-95332633 MsG0380017362.01.T01:three_prime_UTR
TTCCTCTCTCCTTCAAACCG+GGG 0.639857 3:-95332969 MsG0380017362.01.T01:CDS
GCAGGAGAGTGATGTGAAGT+GGG 0.642804 3:-95333306 MsG0380017362.01.T01:intron
TTGAAGGAGAGAGGAACCCA+AGG 0.649137 3:+95332976 None:intergenic
GATCTCGATCTCGAACGCCA+TGG 0.650839 3:-95335602 MsG0380017362.01.T01:exon
GGATAGTGCAGAAAATCTTG+GGG 0.654034 3:-95334715 MsG0380017362.01.T01:CDS
TCTCTTCCTTTCGGGCATGG+TGG 0.655153 3:-95333204 MsG0380017362.01.T01:CDS
GCAGTGAGGATTACTTGTGG+TGG 0.656188 3:-95332393 MsG0380017362.01.T01:three_prime_UTR
AAATGACAGAGACAATTGCA+GGG 0.656961 3:+95332814 None:intergenic
GGGGCCTAAATACATCCCCA+TGG 0.661749 3:+95333084 None:intergenic
ATATAAACAACGATTAGTTG+AGG 0.662223 3:+95335689 None:intergenic
CACCCCGGTTTGAAGGAGAG+AGG 0.665310 3:+95332967 None:intergenic
TGGCTGTCATGAGCCCACCC+CGG 0.665939 3:+95332952 None:intergenic
CAGCAAATCTGAGTTGTTAG+GGG 0.667045 3:+95333064 None:intergenic
ACTGCCCTTTGAGTCCAACA+TGG 0.674258 3:+95334117 None:intergenic
AGCAAATCTGAGTTGTTAGG+GGG 0.675452 3:+95333065 None:intergenic
AAATGTTCAAAGGATCAGAG+TGG 0.690463 3:-95332869 MsG0380017362.01.T01:CDS
TGTGCAGTGAGGATTACTTG+TGG 0.692738 3:-95332396 MsG0380017362.01.T01:three_prime_UTR
ATAAAGAAAGAGGTATAGTG+CGG 0.699094 3:+95332342 None:intergenic
GATTCAACCAGATTGAGGTG+AGG 0.702133 3:+95332512 None:intergenic
TGGTTGGAAGCTTGTCCATG+GGG 0.704860 3:-95333099 MsG0380017362.01.T01:CDS
CTGGAAGTAGCAGAGCACAA+TGG 0.716782 3:+95332420 None:intergenic
GGGAAGGTAGAAGGAGAAAG+CGG 0.717499 3:+95335528 None:intergenic
CGATTAGTTGAGGATAACGG+AGG 0.720038 3:+95335699 None:intergenic
ACTCAAAGGGCAGTATACCG+GGG 0.753482 3:-95334108 MsG0380017362.01.T01:intron
AACGAATGTACAGAGCAAGG+AGG 0.788698 3:-95334013 MsG0380017362.01.T01:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATAAATTTTTTAGTTTCTA+TGG - Chr3:95333078-95333097 MsG0380017362.01.T01:CDS 10.0%
!! AATTCAAAATTGTATAGAAT+AGG + Chr3:95335496-95335515 None:intergenic 15.0%
!! ATAAATGTTAAAAAATTGCT+TGG + Chr3:95333057-95333076 None:intergenic 15.0%
!! CTTAATGAAATATATAGTTT+AGG - Chr3:95332936-95332955 MsG0380017362.01.T01:CDS 15.0%
!!! ATTGATGAACATTTTTATAA+TGG - Chr3:95334063-95334082 MsG0380017362.01.T01:intron 15.0%
!!! GTGTTTTTTTTTTTTTTTTG+TGG - Chr3:95332617-95332636 MsG0380017362.01.T01:three_prime_UTR 15.0%
!! AATCTACTATAGTTATTAGA+TGG - Chr3:95335413-95335432 MsG0380017362.01.T01:intron 20.0%
!! GTCAATTGTTGAAAATAAAA+TGG + Chr3:95333688-95333707 None:intergenic 20.0%
!! GTTATTAACATACATGAATT+AGG - Chr3:95333966-95333985 MsG0380017362.01.T01:CDS 20.0%
!! TAAAATATTTCTTTGTTGCA+GGG - Chr3:95332698-95332717 MsG0380017362.01.T01:CDS 20.0%
!! TACTAATAATCGTTGATATA+CGG - Chr3:95332266-95332285 MsG0380017362.01.T01:three_prime_UTR 20.0%
!! TATATTAAATGCTCTCATTT+GGG - Chr3:95334748-95334767 MsG0380017362.01.T01:CDS 20.0%
!! TTAAAATATTTCTTTGTTGC+AGG - Chr3:95332697-95332716 MsG0380017362.01.T01:CDS 20.0%
!! TTATATTAAATGCTCTCATT+TGG - Chr3:95334747-95334766 MsG0380017362.01.T01:CDS 20.0%
!!! TCATCTTTTTGTTTAGTATT+TGG - Chr3:95333708-95333727 MsG0380017362.01.T01:CDS 20.0%
!!! TTTCAAGTTATATCTCATAA+TGG - Chr3:95333301-95333320 MsG0380017362.01.T01:CDS 20.0%
!!! TTTTTATCAGTTTCTAAGAA+AGG - Chr3:95332909-95332928 MsG0380017362.01.T01:CDS 20.0%
! AAGTAAGTAAGGAAACTTAT+TGG + Chr3:95333496-95333515 None:intergenic 25.0%
! AGATTGAATCTTAATTTCAG+TGG - Chr3:95332222-95332241 MsG0380017362.01.T01:three_prime_UTR 25.0%
! ATATATTTGCAGTATGTCTT+CGG - Chr3:95335619-95335638 MsG0380017362.01.T01:five_prime_UTR 25.0%
! ATATTAAATGCTCTCATTTG+GGG - Chr3:95334749-95334768 MsG0380017362.01.T01:CDS 25.0%
! CATGTATCCAAAGTAAAATA+TGG + Chr3:95335268-95335287 None:intergenic 25.0%
! CATTGAAAATTCACTATATG+TGG - Chr3:95332862-95332881 MsG0380017362.01.T01:CDS 25.0%
! GATAGAAGAAAAAGAAAAGT+TGG + Chr3:95334102-95334121 None:intergenic 25.0%
! GTTATTATTTGATTCCGATT+TGG - Chr3:95333100-95333119 MsG0380017362.01.T01:CDS 25.0%
!! AATCAGTTTTACTACATCTT+TGG - Chr3:95335042-95335061 MsG0380017362.01.T01:intron 25.0%
!! ATATAAACAACGATTAGTTG+AGG + Chr3:95331849-95331868 None:intergenic 25.0%
!! ATCAGTTTTACTACATCTTT+GGG - Chr3:95335043-95335062 MsG0380017362.01.T01:intron 25.0%
!! CATATAGTGAATTTTCAATG+CGG + Chr3:95332862-95332881 None:intergenic 25.0%
!! GTATTTTATCCACAATCATT+TGG - Chr3:95333549-95333568 MsG0380017362.01.T01:intron 25.0%
!! TGATTAGTTATAGCAAGTAA+TGG - Chr3:95335382-95335401 MsG0380017362.01.T01:intron 25.0%
!!! GCCAGATTTTTATTTATGTT+GGG + Chr3:95335783-95335802 None:intergenic 25.0%
!!! TAACTAATCAATTTTGACTG+AGG + Chr3:95335372-95335391 None:intergenic 25.0%
!!! TCTTTTTGTTTAGTATTTGG+TGG - Chr3:95333711-95333730 MsG0380017362.01.T01:CDS 25.0%
AAATACAGATCGAGAAGAAA+TGG + Chr3:95332072-95332091 None:intergenic 30.0%
AATGATTGTTCTCTTCCTTT+CGG - Chr3:95334322-95334341 MsG0380017362.01.T01:CDS 30.0%
AATGTTCATCAATGCAAAAG+AGG + Chr3:95334056-95334075 None:intergenic 30.0%
ACTGAAATATACCACCAAAT+CGG + Chr3:95333117-95333136 None:intergenic 30.0%
AGAAAACTCGCAGAAAATAA+CGG + Chr3:95333259-95333278 None:intergenic 30.0%
AGAATGTTGCATAAAGAAAG+AGG + Chr3:95335206-95335225 None:intergenic 30.0%
AGTACCTTAAAGAAATCTTG+TGG + Chr3:95332042-95332061 None:intergenic 30.0%
AGTTATAGCAAGTAATGGTT+TGG - Chr3:95335387-95335406 MsG0380017362.01.T01:intron 30.0%
ATGTTCATCAATGCAAAAGA+GGG + Chr3:95334055-95334074 None:intergenic 30.0%
CACAAAAATAATGACCTGAA+TGG + Chr3:95333643-95333662 None:intergenic 30.0%
CTATAGTTATTAGATGGTGA+AGG - Chr3:95335419-95335438 MsG0380017362.01.T01:intron 30.0%
CTTTAGTTGTTCCCATAAAA+CGG - Chr3:95333360-95333379 MsG0380017362.01.T01:intron 30.0%
GATAGCTGCATTACATTTAA+AGG + Chr3:95332561-95332580 None:intergenic 30.0%
GCCCAACATAAATAAAAATC+TGG - Chr3:95335779-95335798 MsG0380017362.01.T01:five_prime_UTR 30.0%
GCTGTATTTATACGAGTTAA+CGG + Chr3:95335560-95335579 None:intergenic 30.0%
GGAAGTGAATAAAATGAGTA+CGG + Chr3:95332776-95332795 None:intergenic 30.0%
GTATTGAATAACAATAGCCA+TGG + Chr3:95333474-95333493 None:intergenic 30.0%
GTCATCATTCATTAGCAAAT+AGG + Chr3:95334270-95334289 None:intergenic 30.0%
GTTATAGCAAGTAATGGTTT+GGG - Chr3:95335388-95335407 MsG0380017362.01.T01:intron 30.0%
TAATAATCGTTGATATACGG+AGG - Chr3:95332269-95332288 MsG0380017362.01.T01:three_prime_UTR 30.0%
TCGTTCAGATAAAGTAAGTA+AGG + Chr3:95333507-95333526 None:intergenic 30.0%
TGAAAACAAACAAAATCCCA+AGG - Chr3:95334902-95334921 MsG0380017362.01.T01:intron 30.0%
TTCACCATAACAAAAAAGAG+AGG + Chr3:95334155-95334174 None:intergenic 30.0%
TTCTTTCGATACTTGTTTGT+CGG + Chr3:95331906-95331925 None:intergenic 30.0%
! ATAAAGAAAGAGGTATAGTG+CGG + Chr3:95335196-95335215 None:intergenic 30.0%
! CTTTGATGGTTTGTCTAAAA+GGG - Chr3:95335579-95335598 MsG0380017362.01.T01:CDS 30.0%
! TCGTATAAATACAGCTTTGA+TGG - Chr3:95335565-95335584 MsG0380017362.01.T01:CDS 30.0%
! TCTTAATCCTCGAGTTTTTA+AGG - Chr3:95335728-95335747 MsG0380017362.01.T01:five_prime_UTR 30.0%
! TTCTTTTTCTTCTATCCAAC+TGG - Chr3:95334106-95334125 MsG0380017362.01.T01:intron 30.0%
! TTTGAACTCCTTAGCATTTT+TGG + Chr3:95333194-95333213 None:intergenic 30.0%
!! AATAACCATTCTAAAGCACA+GGG + Chr3:95333952-95333971 None:intergenic 30.0%
!! ATTATTTGATTCCGATTTGG+TGG - Chr3:95333103-95333122 MsG0380017362.01.T01:CDS 30.0%
!! CGCCAGATTTTTATTTATGT+TGG + Chr3:95335784-95335803 None:intergenic 30.0%
!! TAATAACCATTCTAAAGCAC+AGG + Chr3:95333953-95333972 None:intergenic 30.0%
!! TTTTTAAGGAAAAGGGATCA+TGG - Chr3:95335742-95335761 MsG0380017362.01.T01:five_prime_UTR 30.0%
!!! GAACAGGTGTTCAATTTTTT+GGG - Chr3:95334507-95334526 MsG0380017362.01.T01:intron 30.0%
!!! TCATCCTCTCTTTTTTGTTA+TGG - Chr3:95334148-95334167 MsG0380017362.01.T01:CDS 30.0%
AAAATGACAGAGACAATTGC+AGG + Chr3:95334725-95334744 None:intergenic 35.0%
AAATGACAGAGACAATTGCA+GGG + Chr3:95334724-95334743 None:intergenic 35.0%
AAATGTTCAAAGGATCAGAG+TGG - Chr3:95334666-95334685 MsG0380017362.01.T01:intron 35.0%
AACACGAGTATGATGGTAAA+TGG - Chr3:95333765-95333784 MsG0380017362.01.T01:CDS 35.0%
AATAAAATGAGTACGGAAGC+TGG + Chr3:95332769-95332788 None:intergenic 35.0%
AATGAAGAAGACAATCCAGT+TGG + Chr3:95334124-95334143 None:intergenic 35.0%
AATGTGGTTATCCAATTCAG+AGG + Chr3:95332971-95332990 None:intergenic 35.0%
ACAAAACAATATGCATACCC+CGG + Chr3:95333447-95333466 None:intergenic 35.0%
ACACGAGTATGATGGTAAAT+GGG - Chr3:95333766-95333785 MsG0380017362.01.T01:CDS 35.0%
ACAGCAAATCTGAGTTGTTA+GGG + Chr3:95334475-95334494 None:intergenic 35.0%
ACGAATCAGATAATCTTCGA+TGG - Chr3:95332459-95332478 MsG0380017362.01.T01:three_prime_UTR 35.0%
ACTTGATGCCAAAAATGCTA+AGG - Chr3:95333183-95333202 MsG0380017362.01.T01:CDS 35.0%
AGAAGATCAATGACGAGTAT+CGG - Chr3:95333215-95333234 MsG0380017362.01.T01:CDS 35.0%
AGAGCAAACATTGTACCAAA+TGG + Chr3:95334797-95334816 None:intergenic 35.0%
AGGATAGTGCAGAAAATCTT+GGG - Chr3:95332819-95332838 MsG0380017362.01.T01:CDS 35.0%
AGTGTTAAACACGAGTATGA+TGG - Chr3:95333758-95333777 MsG0380017362.01.T01:CDS 35.0%
ATAAAATGAGTACGGAAGCT+GGG + Chr3:95332768-95332787 None:intergenic 35.0%
ATGATTGTTCTCTTCCTTTC+GGG - Chr3:95334323-95334342 MsG0380017362.01.T01:CDS 35.0%
ATTTATGTTGGGCCAAACTT+TGG + Chr3:95335772-95335791 None:intergenic 35.0%
ATTTGGTACAATGTTTGCTC+TGG - Chr3:95334796-95334815 MsG0380017362.01.T01:CDS 35.0%
CAATAGAGAACCAGTGAATT+TGG + Chr3:95334292-95334311 None:intergenic 35.0%
CACATCTCTATGATACTTGA+CGG + Chr3:95333581-95333600 None:intergenic 35.0%
CCACAAATGTGTAATGTTGT+GGG - Chr3:95333151-95333170 MsG0380017362.01.T01:CDS 35.0%
CGCTTGTACAAAATGTTCAA+AGG - Chr3:95334656-95334675 MsG0380017362.01.T01:intron 35.0%
CGTTATACTTTGCAATGTCA+CGG + Chr3:95334382-95334401 None:intergenic 35.0%
GATCATGGTATTCCAAAGTT+TGG - Chr3:95335757-95335776 MsG0380017362.01.T01:five_prime_UTR 35.0%
GTGTAGTTAGGAATAGATGT+TGG - Chr3:95332423-95332442 MsG0380017362.01.T01:three_prime_UTR 35.0%
TAACTGTATCAGTTTGCAAC+CGG - Chr3:95331753-95331772 MsG0380017362.01.T01:three_prime_UTR 35.0%
TAAGTTCCACATGTGTAGTT+AGG - Chr3:95332411-95332430 MsG0380017362.01.T01:three_prime_UTR 35.0%
TCAATGAAAACAGCTCCAAA+TGG + Chr3:95334991-95335010 None:intergenic 35.0%
TCTATTCCTAACTACACATG+TGG + Chr3:95332420-95332439 None:intergenic 35.0%
TGAATGATGACCAAATTCAC+TGG - Chr3:95334279-95334298 MsG0380017362.01.T01:intron 35.0%
TGCATAGAATCCAATAGTAC+CGG + Chr3:95335321-95335340 None:intergenic 35.0%
TTATGGGAACAACTAAAGGA+AGG + Chr3:95333358-95333377 None:intergenic 35.0%
TTGTGGTCATAAACTTGATC+TGG - Chr3:95332634-95332653 MsG0380017362.01.T01:exon 35.0%
TTTAGCCAACTTTGATTGCA+CGG - Chr3:95332351-95332370 MsG0380017362.01.T01:three_prime_UTR 35.0%
! AAACTGATTCAACCAGATTG+AGG + Chr3:95335031-95335050 None:intergenic 35.0%
! ACTATCCTGTATCTTTTTGG+GGG + Chr3:95332807-95332826 None:intergenic 35.0%
! ATCCTGATCATTCCGTTTTA+TGG + Chr3:95333375-95333394 None:intergenic 35.0%
! CAACGATTAGTTGAGGATAA+CGG + Chr3:95331842-95331861 None:intergenic 35.0%
! CACTATCCTGTATCTTTTTG+GGG + Chr3:95332808-95332827 None:intergenic 35.0%
! CGTTTTATGGGAACAACTAA+AGG + Chr3:95333362-95333381 None:intergenic 35.0%
! GCACTATCCTGTATCTTTTT+GGG + Chr3:95332809-95332828 None:intergenic 35.0%
! GCTTTGATGGTTTGTCTAAA+AGG - Chr3:95335578-95335597 MsG0380017362.01.T01:CDS 35.0%
! GTGTCAGCCATATTTTACTT+TGG - Chr3:95335258-95335277 MsG0380017362.01.T01:intron 35.0%
! GTTTTCATGGGAATATTTGC+TGG - Chr3:95334620-95334639 MsG0380017362.01.T01:intron 35.0%
! GTTTTTGTGGGTAGCTATAT+TGG - Chr3:95334851-95334870 MsG0380017362.01.T01:intron 35.0%
! TAGCTTCTTATGCGTTTTTG+TGG - Chr3:95335292-95335311 MsG0380017362.01.T01:intron 35.0%
! TCCTGATCATTCCGTTTTAT+GGG + Chr3:95333374-95333393 None:intergenic 35.0%
! TCTAGAATCCTGCAAATGAT+AGG + Chr3:95333332-95333351 None:intergenic 35.0%
! TGCACTATCCTGTATCTTTT+TGG + Chr3:95332810-95332829 None:intergenic 35.0%
! TTATGCGTTTTTGTGGTTAC+CGG - Chr3:95335299-95335318 MsG0380017362.01.T01:intron 35.0%
! TTGGATTCTATGCATGCTTT+TGG - Chr3:95335327-95335346 MsG0380017362.01.T01:intron 35.0%
!! ACCATGATATTTGCTATCCT+TGG - Chr3:95334542-95334561 MsG0380017362.01.T01:intron 35.0%
!! CACATATGATGTTGATTTCC+AGG - Chr3:95333892-95333911 MsG0380017362.01.T01:intron 35.0%
!! CATATTGTTTTGTAGCACCA+TGG - Chr3:95333454-95333473 MsG0380017362.01.T01:intron 35.0%
!! CCATGATATTTGCTATCCTT+GGG - Chr3:95334543-95334562 MsG0380017362.01.T01:intron 35.0%
!! CCTCGAGTTTTTAAGGAAAA+GGG - Chr3:95335735-95335754 MsG0380017362.01.T01:five_prime_UTR 35.0%
!! CTCTGGTCTTTTTATGGTTT+GGG - Chr3:95334813-95334832 MsG0380017362.01.T01:CDS 35.0%
!! GATTTGCTGTGTGTTTATGT+TGG - Chr3:95334485-95334504 MsG0380017362.01.T01:intron 35.0%
!! GGGATTTTGTTTGTTTTCAC+AGG + Chr3:95334901-95334920 None:intergenic 35.0%
!! TCCTCGAGTTTTTAAGGAAA+AGG - Chr3:95335734-95335753 MsG0380017362.01.T01:five_prime_UTR 35.0%
!! TGTTTGCTCTGGTCTTTTTA+TGG - Chr3:95334807-95334826 MsG0380017362.01.T01:CDS 35.0%
!! TTATTATCCGCTTTTGCCTT+TGG - Chr3:95334197-95334216 MsG0380017362.01.T01:intron 35.0%
!!! GGAACAGGTGTTCAATTTTT+TGG - Chr3:95334506-95334525 MsG0380017362.01.T01:intron 35.0%
!!! TCAGTTCCACTTGTTTTTGT+GGG - Chr3:95334839-95334858 MsG0380017362.01.T01:intron 35.0%
AACCACATTTGCAGAGTTGA+TGG - Chr3:95332982-95333001 MsG0380017362.01.T01:CDS 40.0%
AACTGAATCTGCTAGAATCG+TGG - Chr3:95333603-95333622 MsG0380017362.01.T01:intron 40.0%
AATGTAATGCAGCTATCTGC+TGG - Chr3:95332564-95332583 MsG0380017362.01.T01:three_prime_UTR 40.0%
AATTAGTCCTCTCCTTCTGT+TGG - Chr3:95331780-95331799 MsG0380017362.01.T01:three_prime_UTR 40.0%
ACAAACCGTGCAATCAAAGT+TGG + Chr3:95332359-95332378 None:intergenic 40.0%
ACTGAATCTGCTAGAATCGT+GGG - Chr3:95333604-95333623 MsG0380017362.01.T01:intron 40.0%
AGCAAATCTGAGTTGTTAGG+GGG + Chr3:95334473-95334492 None:intergenic 40.0%
AGCTAAAACCCAGATATTCC+AGG + Chr3:95335680-95335699 None:intergenic 40.0%
ATGGAAACCAAGCTGATAGA+CGG + Chr3:95333402-95333421 None:intergenic 40.0%
ATTGGGGGAATACTTCCATT+TGG - Chr3:95334973-95334992 MsG0380017362.01.T01:intron 40.0%
ATTGGTGTGAGGGTTGAAAT+TGG - Chr3:95333999-95334018 MsG0380017362.01.T01:CDS 40.0%
CAAATTTGAGCTTGAATGCC+TGG - Chr3:95335659-95335678 MsG0380017362.01.T01:five_prime_UTR 40.0%
CAAGCTTGAAATCACAAAGC+TGG - Chr3:95335236-95335255 MsG0380017362.01.T01:intron 40.0%
CAATCAAAACAGAGAAGGCT+GGG + Chr3:95334957-95334976 None:intergenic 40.0%
CACAGCAAATCTGAGTTGTT+AGG + Chr3:95334476-95334495 None:intergenic 40.0%
CAGCAAATCTGAGTTGTTAG+GGG + Chr3:95334474-95334493 None:intergenic 40.0%
CAGGATAGTGCAGAAAATCT+TGG - Chr3:95332818-95332837 MsG0380017362.01.T01:CDS 40.0%
CCCAAGGATAGCAAATATCA+TGG + Chr3:95334546-95334565 None:intergenic 40.0%
CCCACAACATTACACATTTG+TGG + Chr3:95333154-95333173 None:intergenic 40.0%
CGCTCCACAAGATTTCTTTA+AGG - Chr3:95332035-95332054 MsG0380017362.01.T01:three_prime_UTR 40.0%
CGGTAAATGCCAAATGATTG+TGG + Chr3:95333561-95333580 None:intergenic 40.0%
CTGTGTGTTTATGTTGGAAC+AGG - Chr3:95334491-95334510 MsG0380017362.01.T01:intron 40.0%
CTTGAATGCCTGGAATATCT+GGG - Chr3:95335669-95335688 MsG0380017362.01.T01:five_prime_UTR 40.0%
GAAGATCAATGACGAGTATC+GGG - Chr3:95333216-95333235 MsG0380017362.01.T01:CDS 40.0%
GCCACAAATGTGTAATGTTG+TGG - Chr3:95333150-95333169 MsG0380017362.01.T01:CDS 40.0%
GGAACAGTTAACCTCTGAAT+TGG - Chr3:95332957-95332976 MsG0380017362.01.T01:CDS 40.0%
GGATAGTGCAGAAAATCTTG+GGG - Chr3:95332820-95332839 MsG0380017362.01.T01:CDS 40.0%
GGATGATGAAGACCAAAAAG+AGG + Chr3:95335071-95335090 None:intergenic 40.0%
GTTTCCATGTTGGACTCAAA+GGG - Chr3:95333414-95333433 MsG0380017362.01.T01:intron 40.0%
TAGCTACCCACAAAAACAAG+TGG + Chr3:95334848-95334867 None:intergenic 40.0%
TATCAGCTTGGTTTCCATGT+TGG - Chr3:95333404-95333423 MsG0380017362.01.T01:intron 40.0%
TCAAGAAGTTGAAGAGAGCA+AGG - Chr3:95333859-95333878 MsG0380017362.01.T01:intron 40.0%
TCCCATAAAACGGAATGATC+AGG - Chr3:95333370-95333389 MsG0380017362.01.T01:intron 40.0%
TCTTTATCCTCACCTCAATC+TGG - Chr3:95335016-95335035 MsG0380017362.01.T01:intron 40.0%
TGGGTAATCGCTCATTAACT+TGG - Chr3:95333002-95333021 MsG0380017362.01.T01:CDS 40.0%
TGGTGAAGGAAGTTTGTGTA+AGG - Chr3:95335433-95335452 MsG0380017362.01.T01:intron 40.0%
TTCACAGGATTCTCAATTGC+AGG + Chr3:95334886-95334905 None:intergenic 40.0%
TTGATATACGGAGGATTGTG+AGG - Chr3:95332278-95332297 MsG0380017362.01.T01:three_prime_UTR 40.0%
TTGCTCTCTTCAACTTCTTG+AGG + Chr3:95333860-95333879 None:intergenic 40.0%
TTGTCCATGGGGATGTATTT+AGG - Chr3:95334447-95334466 MsG0380017362.01.T01:intron 40.0%
TTTCAGCACAAGTGACAACA+AGG + Chr3:95335092-95335111 None:intergenic 40.0%
TTTGTGGTTACCGGTACTAT+TGG - Chr3:95335308-95335327 MsG0380017362.01.T01:intron 40.0%
! ACCACATTTGCAGAGTTGAT+GGG - Chr3:95332983-95333002 MsG0380017362.01.T01:CDS 40.0%
! AGGAGAGGACTAATTTTCTC+CGG + Chr3:95331775-95331794 None:intergenic 40.0%
! ATTTGGGGCCAAAAATCATC+TGG - Chr3:95334764-95334783 MsG0380017362.01.T01:CDS 40.0%
! CAGCTTTGTGATTTCAAGCT+TGG + Chr3:95335238-95335257 None:intergenic 40.0%
! CATACATGAATTAGGCACTG+AGG - Chr3:95333974-95333993 MsG0380017362.01.T01:CDS 40.0%
! CCCTTTTCCTTAAAAACTCG+AGG + Chr3:95335738-95335757 None:intergenic 40.0%
! GTTACGACACTTGTGTTTTC+TGG - Chr3:95335705-95335724 MsG0380017362.01.T01:five_prime_UTR 40.0%
! GTTGAAATTGGTCTGTCGTT+TGG - Chr3:95334011-95334030 MsG0380017362.01.T01:intron 40.0%
!! CATCTTTGGGTTCCTCTTTT+TGG - Chr3:95335056-95335075 MsG0380017362.01.T01:intron 40.0%
!! CTATACCCTGTGCTTTAGAA+TGG - Chr3:95333944-95333963 MsG0380017362.01.T01:CDS 40.0%
!! GAATTAGGCACTGAGGTAAT+TGG - Chr3:95333981-95334000 MsG0380017362.01.T01:CDS 40.0%
!! GCTCTGGTCTTTTTATGGTT+TGG - Chr3:95334812-95334831 MsG0380017362.01.T01:CDS 40.0%
!! TGGTTTTGCCTATCATTTGC+AGG - Chr3:95333321-95333340 MsG0380017362.01.T01:intron 40.0%
!!! AGCCTTCTCTGTTTTGATTG+GGG - Chr3:95334957-95334976 MsG0380017362.01.T01:intron 40.0%
!!! ATGCATGCTTTTGGTTCACA+AGG - Chr3:95335336-95335355 MsG0380017362.01.T01:intron 40.0%
!!! CAGCCTTCTCTGTTTTGATT+GGG - Chr3:95334956-95334975 MsG0380017362.01.T01:intron 40.0%
!!! CTCAGTTCCACTTGTTTTTG+TGG - Chr3:95334838-95334857 MsG0380017362.01.T01:intron 40.0%
!!! CTCTTGGTTTGGGTTTTCAT+GGG - Chr3:95334608-95334627 MsG0380017362.01.T01:intron 40.0%
AACGAATGTACAGAGCAAGG+AGG - Chr3:95333522-95333541 MsG0380017362.01.T01:intron 45.0%
AATCTTGGGGAAGTTCTTCG+TGG - Chr3:95332833-95332852 MsG0380017362.01.T01:CDS 45.0%
ACAACTGTGTGCTTAGCATG+AGG + Chr3:95333824-95333843 None:intergenic 45.0%
ACCCATCAACTCTGCAAATG+TGG + Chr3:95332987-95333006 None:intergenic 45.0%
AGAGACAATTGCAGGGAACA+AGG + Chr3:95334717-95334736 None:intergenic 45.0%
AGGGTCACATGTTGTCAAAC+GGG + Chr3:95333804-95333823 None:intergenic 45.0%
AGTAATCCTCACTGCACAAC+TGG + Chr3:95335137-95335156 None:intergenic 45.0%
AGTGGAAAAGAATTGCCCTC+AGG - Chr3:95334684-95334703 MsG0380017362.01.T01:CDS 45.0%
ATAGCAGCCAAAGGCAAAAG+CGG + Chr3:95334207-95334226 None:intergenic 45.0%
CAACTGTGTGCTTAGCATGA+GGG + Chr3:95333823-95333842 None:intergenic 45.0%
CACTGAGGTAATTGGTGTGA+GGG - Chr3:95333989-95334008 MsG0380017362.01.T01:CDS 45.0%
CCAATCAAAACAGAGAAGGC+TGG + Chr3:95334958-95334977 None:intergenic 45.0%
CTGAACGAATGTACAGAGCA+AGG - Chr3:95333519-95333538 MsG0380017362.01.T01:intron 45.0%
CTTCCAACCAGTCTCTTCTT+GGG + Chr3:95334426-95334445 None:intergenic 45.0%
GAAAACCCAAACCAAGAGCA+TGG + Chr3:95334606-95334625 None:intergenic 45.0%
GAATAGGTTACACGTGCACA+TGG + Chr3:95335480-95335499 None:intergenic 45.0%
GAGAGATCTCAAAAACGCCA+TGG + Chr3:95331953-95331972 None:intergenic 45.0%
GAGGGTCACATGTTGTCAAA+CGG + Chr3:95333805-95333824 None:intergenic 45.0%
GATTCAACCAGATTGAGGTG+AGG + Chr3:95335026-95335045 None:intergenic 45.0%
GATTCTACCGTCTATCAGCT+TGG - Chr3:95333392-95333411 MsG0380017362.01.T01:intron 45.0%
GCTTGAATGCCTGGAATATC+TGG - Chr3:95335668-95335687 MsG0380017362.01.T01:five_prime_UTR 45.0%
GGTTTCCATGTTGGACTCAA+AGG - Chr3:95333413-95333432 MsG0380017362.01.T01:intron 45.0%
TATCAGCTCATAAGCTCACC+TGG + Chr3:95333913-95333932 None:intergenic 45.0%
TCCCCCAATCAAAACAGAGA+AGG + Chr3:95334962-95334981 None:intergenic 45.0%
TGTGCAGTGAGGATTACTTG+TGG - Chr3:95335139-95335158 MsG0380017362.01.T01:intron 45.0%
! ATGTGAAGTGGGCTTCAAGA+TGG - Chr3:95334240-95334259 MsG0380017362.01.T01:intron 45.0%
! CGATTAGTTGAGGATAACGG+AGG + Chr3:95331839-95331858 None:intergenic 45.0%
! GAAATTGGTCTGTCGTTTGG+CGG - Chr3:95334014-95334033 MsG0380017362.01.T01:intron 45.0%
! GCACAGCTCCAGATGATTTT+TGG + Chr3:95334775-95334794 None:intergenic 45.0%
! TGTGAAGTGGGCTTCAAGAT+GGG - Chr3:95334241-95334260 MsG0380017362.01.T01:intron 45.0%
!! ATCTTTTTGGGGGCAGGATA+AGG + Chr3:95332797-95332816 None:intergenic 45.0%
!! GCTTTGAGGTTAAGCCATTC+AGG - Chr3:95333626-95333645 MsG0380017362.01.T01:intron 45.0%
!!! CCAGCCTTCTCTGTTTTGAT+TGG - Chr3:95334955-95334974 MsG0380017362.01.T01:intron 45.0%
!!! GCCTTCTCTGTTTTGATTGG+GGG - Chr3:95334958-95334977 MsG0380017362.01.T01:intron 45.0%
!!! GCTCTTGGTTTGGGTTTTCA+TGG - Chr3:95334607-95334626 MsG0380017362.01.T01:intron 45.0%
AAGCCCAAGAAGAGACTGGT+TGG - Chr3:95334420-95334439 MsG0380017362.01.T01:intron 50.0%
ACTCAAAGGGCAGTATACCG+GGG - Chr3:95333427-95333446 MsG0380017362.01.T01:intron 50.0%
ACTGCCCTTTGAGTCCAACA+TGG + Chr3:95333421-95333440 None:intergenic 50.0%
ACTGGTTGGAAGCTTGTCCA+TGG - Chr3:95334434-95334453 MsG0380017362.01.T01:intron 50.0%
AGAAGGAGAAAGCGGTGTGA+AGG + Chr3:95332002-95332021 None:intergenic 50.0%
CTACTTCCAGTTGTGCAGTG+AGG - Chr3:95335128-95335147 MsG0380017362.01.T01:intron 50.0%
CTCTTCTTGGGCTTCTTCCT+GGG + Chr3:95334414-95334433 None:intergenic 50.0%
CTGGAAGTAGCAGAGCACAA+TGG + Chr3:95335118-95335137 None:intergenic 50.0%
CTGGTTGGAAGCTTGTCCAT+GGG - Chr3:95334435-95334454 MsG0380017362.01.T01:intron 50.0%
GAACAAGGTTGCAGTCCTGA+GGG + Chr3:95334702-95334721 None:intergenic 50.0%
GAAGAAGCCCAAGAAGAGAC+TGG - Chr3:95334416-95334435 MsG0380017362.01.T01:intron 50.0%
GACAGCCATGCTCTTGGTTT+GGG - Chr3:95334598-95334617 MsG0380017362.01.T01:intron 50.0%
GACTCAAAGGGCAGTATACC+GGG - Chr3:95333426-95333445 MsG0380017362.01.T01:intron 50.0%
GCACTGAGGTAATTGGTGTG+AGG - Chr3:95333988-95334007 MsG0380017362.01.T01:CDS 50.0%
GCAGGAGAGTGATGTGAAGT+GGG - Chr3:95334229-95334248 MsG0380017362.01.T01:intron 50.0%
GCAGTGAGGATTACTTGTGG+TGG - Chr3:95335142-95335161 MsG0380017362.01.T01:intron 50.0%
GCTTCCAACCAGTCTCTTCT+TGG + Chr3:95334427-95334446 None:intergenic 50.0%
GCTTTCTCCTTCTACCTTCC+CGG - Chr3:95332009-95332028 MsG0380017362.01.T01:three_prime_UTR 50.0%
GGACTCAAAGGGCAGTATAC+CGG - Chr3:95333425-95333444 MsG0380017362.01.T01:intron 50.0%
GGGAAGGTAGAAGGAGAAAG+CGG + Chr3:95332010-95332029 None:intergenic 50.0%
GGTTCCTCTCTCCTTCAAAC+CGG - Chr3:95334564-95334583 MsG0380017362.01.T01:intron 50.0%
GTATAACGAGCTTGAGACCC+AGG - Chr3:95334394-95334413 MsG0380017362.01.T01:CDS 50.0%
GTGAGGATTACTTGTGGTGG+TGG - Chr3:95335145-95335164 MsG0380017362.01.T01:intron 50.0%
GTGCGGAAGAACCAGAAGTA+AGG + Chr3:95335179-95335198 None:intergenic 50.0%
GTTCCTCTCTCCTTCAAACC+GGG - Chr3:95334565-95334584 MsG0380017362.01.T01:intron 50.0%
TAGTCCTCTCCTTCTGTTGG+CGG - Chr3:95331783-95331802 MsG0380017362.01.T01:three_prime_UTR 50.0%
TCCTGCCCCCAAAAAGATAC+AGG - Chr3:95332799-95332818 MsG0380017362.01.T01:CDS 50.0%
TCTCTTCTTGGGCTTCTTCC+TGG + Chr3:95334415-95334434 None:intergenic 50.0%
TGACAGCCATGCTCTTGGTT+TGG - Chr3:95334597-95334616 MsG0380017362.01.T01:intron 50.0%
TGCAGGAGAGTGATGTGAAG+TGG - Chr3:95334228-95334247 MsG0380017362.01.T01:intron 50.0%
TGCTAGAATCGTGGGCTTTG+AGG - Chr3:95333612-95333631 MsG0380017362.01.T01:intron 50.0%
TGGCGGTCATACCTTACTTC+TGG - Chr3:95335165-95335184 MsG0380017362.01.T01:intron 50.0%
TGGTTGGAAGCTTGTCCATG+GGG - Chr3:95334436-95334455 MsG0380017362.01.T01:intron 50.0%
TGTTCTCTTCCTTTCGGGCA+TGG - Chr3:95334328-95334347 MsG0380017362.01.T01:CDS 50.0%
TTCCTCTCTCCTTCAAACCG+GGG - Chr3:95334566-95334585 MsG0380017362.01.T01:intron 50.0%
TTGAAGGAGAGAGGAACCCA+AGG + Chr3:95334562-95334581 None:intergenic 50.0%
! TCATCTGGAGCTGTGCCATT+TGG - Chr3:95334779-95334798 MsG0380017362.01.T01:CDS 50.0%
!! AGGATTACTTGTGGTGGTGG+CGG - Chr3:95335148-95335167 MsG0380017362.01.T01:intron 50.0%
!! TCCTGTATCTTTTTGGGGGC+AGG + Chr3:95332803-95332822 None:intergenic 50.0%
AAATCTTGTGGAGCGACGCC+GGG + Chr3:95332030-95332049 None:intergenic 55.0%
CTCCTGCAGATAGCAGCCAA+AGG + Chr3:95334216-95334235 None:intergenic 55.0%
GAAATCTTGTGGAGCGACGC+CGG + Chr3:95332031-95332050 None:intergenic 55.0%
GAAGGCTGGGTTCATGTACC+AGG + Chr3:95334944-95334963 None:intergenic 55.0%
GATCTCGATCTCGAACGCCA+TGG - Chr3:95331933-95331952 MsG0380017362.01.T01:three_prime_UTR 55.0%
GCTCATGACAGCCATGCTCT+TGG - Chr3:95334592-95334611 MsG0380017362.01.T01:intron 55.0%
GGAACAAGGTTGCAGTCCTG+AGG + Chr3:95334703-95334722 None:intergenic 55.0%
GGGGCCTAAATACATCCCCA+TGG + Chr3:95334454-95334473 None:intergenic 55.0%
TCATGTACCAGGCCTGCTCA+GGG + Chr3:95334933-95334952 None:intergenic 55.0%
TCATTGCCACCATGCCCGAA+AGG + Chr3:95334340-95334359 None:intergenic 55.0%
TCTCTCCTTCAAACCGGGGT+GGG - Chr3:95334570-95334589 MsG0380017362.01.T01:intron 55.0%
TCTCTTCCTTTCGGGCATGG+TGG - Chr3:95334331-95334350 MsG0380017362.01.T01:CDS 55.0%
TGCCTTTGGCTGCTATCTGC+AGG - Chr3:95334211-95334230 MsG0380017362.01.T01:intron 55.0%
TTCATGTACCAGGCCTGCTC+AGG + Chr3:95334934-95334953 None:intergenic 55.0%
CCTGCTCAGGGATCTGCCTT+GGG + Chr3:95334921-95334940 None:intergenic 60.0%
CTCTCTCCTTCAAACCGGGG+TGG - Chr3:95334569-95334588 MsG0380017362.01.T01:intron 60.0%
! ATGAGCCCACCCCGGTTTGA+AGG + Chr3:95334578-95334597 None:intergenic 60.0%
! CACCCCGGTTTGAAGGAGAG+AGG + Chr3:95334571-95334590 None:intergenic 60.0%
AGCGACGCCGGGAAGGTAGA+AGG + Chr3:95332019-95332038 None:intergenic 65.0%
CCCAAGGCAGATCCCTGAGC+AGG - Chr3:95334918-95334937 MsG0380017362.01.T01:intron 65.0%
GCCTGCTCAGGGATCTGCCT+TGG + Chr3:95334922-95334941 None:intergenic 65.0%
GTCGCCGCCAACAGAAGGAG+AGG + Chr3:95331790-95331809 None:intergenic 65.0%
TCGTCGTCGCCGCCAACAGA+AGG + Chr3:95331795-95331814 None:intergenic 65.0%
TGGCTGTCATGAGCCCACCC+CGG + Chr3:95334586-95334605 None:intergenic 65.0%
CTTGTGGAGCGACGCCGGGA+AGG + Chr3:95332026-95332045 None:intergenic 70.0%
GGCAGATCCCTGAGCAGGCC+TGG - Chr3:95334923-95334942 MsG0380017362.01.T01:intron 70.0%
Chromosome Type Strat End Strand Name
Chr3 gene 95331714 95335843 95331714 ID=MsG0380017362.01;Name=MsG0380017362.01
Chr3 mRNA 95331714 95335843 95331714 ID=MsG0380017362.01.T01;Parent=MsG0380017362.01;Name=MsG0380017362.01.T01;_AED=0.48;_eAED=0.49;_QI=238|0.71|0.87|1|1|1|8|939|484
Chr3 exon 95331714 95333324 95331714 ID=MsG0380017362.01.T01:exon:1660;Parent=MsG0380017362.01.T01
Chr3 exon 95333644 95333797 95333644 ID=MsG0380017362.01.T01:exon:1659;Parent=MsG0380017362.01.T01
Chr3 exon 95333910 95334022 95333910 ID=MsG0380017362.01.T01:exon:1658;Parent=MsG0380017362.01.T01
Chr3 exon 95334109 95334214 95334109 ID=MsG0380017362.01.T01:exon:1657;Parent=MsG0380017362.01.T01
Chr3 exon 95334312 95334421 95334312 ID=MsG0380017362.01.T01:exon:1656;Parent=MsG0380017362.01.T01
Chr3 exon 95334674 95334838 95334674 ID=MsG0380017362.01.T01:exon:1655;Parent=MsG0380017362.01.T01
Chr3 exon 95335185 95335214 95335185 ID=MsG0380017362.01.T01:exon:1654;Parent=MsG0380017362.01.T01
Chr3 exon 95335501 95335843 95335501 ID=MsG0380017362.01.T01:exon:1653;Parent=MsG0380017362.01.T01
Chr3 five_prime_UTR 95335606 95335843 95335606 ID=MsG0380017362.01.T01:five_prime_utr;Parent=MsG0380017362.01.T01
Chr3 CDS 95335501 95335605 95335501 ID=MsG0380017362.01.T01:cds;Parent=MsG0380017362.01.T01
Chr3 CDS 95335185 95335214 95335185 ID=MsG0380017362.01.T01:cds;Parent=MsG0380017362.01.T01
Chr3 CDS 95334674 95334838 95334674 ID=MsG0380017362.01.T01:cds;Parent=MsG0380017362.01.T01
Chr3 CDS 95334312 95334421 95334312 ID=MsG0380017362.01.T01:cds;Parent=MsG0380017362.01.T01
Chr3 CDS 95334109 95334214 95334109 ID=MsG0380017362.01.T01:cds;Parent=MsG0380017362.01.T01
Chr3 CDS 95333910 95334022 95333910 ID=MsG0380017362.01.T01:cds;Parent=MsG0380017362.01.T01
Chr3 CDS 95333644 95333797 95333644 ID=MsG0380017362.01.T01:cds;Parent=MsG0380017362.01.T01
Chr3 CDS 95332653 95333324 95332653 ID=MsG0380017362.01.T01:cds;Parent=MsG0380017362.01.T01
Chr3 three_prime_UTR 95331714 95332652 95331714 ID=MsG0380017362.01.T01:three_prime_utr;Parent=MsG0380017362.01.T01
Gene Sequence

>MsG0380017362.01.T01

ATGGCGTTTTTGAGATCTCTCGTTTTCTCTACACTTCTTCTCTCTCTCCTTCACACCGCTTTCTCCTTCTACCTTCCCGGCGTCGCTCCACAAGATTTCTTTAAGTTACTTAATTTAGCCAACTTTGATTGCACGGGAGATGTATTGCAAGTGAAAGTAAACAAATTAACATCTACGAAGACCCAGCTTCCGTACTCATTTTATTCACTTCCTTATCCTGCCCCCAAAAAGATACAGGATAGTGCAGAAAATCTTGGGGAAGTTCTTCGTGGTGACCGCATTGAAAATTCACTATATGTGTTTAAAATGCGCGAGCCACAAATGTGTAATGTTGTGGGTAAAATTAAACTTGATGCCAAAAATGCTAAGGAGTTCAAAGAGAAGATCAATGACGAGTATCGGGTGAACATGATTCTAGATAACCTTCCTTTAGTTGTTCCCATAAAACGGAATGATCAGGATTCTACCGTCTATCAGCTTGGTTTCCATGTTGGACTCAAAGGGCAGTATACCGGGAGCAAGGAGGAAAAGTATTTTATCCACAATCATTTGGCATTTACCGTCAAGTATCATAGAGATGTGCAAACTGAATCTGCTAGAATCGTGGGCTTTGAGGTTAAGCCATTCAGTGTTAAACACGAGTATGATGGTAAATGGGATGACAAAAAGACCCGTTTGACAACATGTGACCCTCATGCTAAGCACACAGTTGTGAACAACAACTCTCCTCAAGAAGTTGAAGAGAGCAAGGAAATTATCTTCACATATGATGTTGATTTCCAGGAGAGTGATGTGAAGTGGGCTTCAAGATGGGATGCCTATTTGCTAATGAATGATGACCAAATTCACTGGTTCTCTATTGTAAACTCATTAATGATTGTTCTCTTCCTTTCGGGCATGGTGGCAATGATAATGCTGAGAACACTCTACCGTGACATTGCAAAGTATAACGAGCTTGAGACCCAGGAAGAAGCCCAAGAAGAGACTGGTTGGAAGCTTGTCCATGGGGATGTATTTAGGCCCCCTAACAACTCAGATTTGCTGTGTGTTTATGTTGGAACAGGTGTTCAATTTTTTGGGATGATACTAGTAACCATGATATTTGCTATCCTTGGGTTCCTCTCTCCTTCAAACCGGGGTGGGCTCATGACAGCCATGCTCTTGGTTTGGGTTTTCATGGGAATATTTGCTGGTTATTCTTCAACTCGCTTGTACAAAATGTTCAAAGGATCAGAGTGGAAAAGAATTGCCCTCAGGACTGCAACCTTGTTCCCTGCAATTGTCTCTGTCATTTTCTTTATATTAAATGCTCTCATTTGGGGCCAAAAATCATCTGGAGCTGTGCCATTTGGTACAATGTTTGCTCTGGTCTTTTTATGGTTTGGGATCTCAGTTCCACTTGTTTTTGTGGGTAGCTATATTGGTTTCAAAAACCTGCAATTGAGAATCCTGTGA
Protein sequence

>MsG0380017362.01.T01

MAFLRSLVFSTLLLSLLHTAFSFYLPGVAPQDFFKLLNLANFDCTGDVLQVKVNKLTSTKTQLPYSFYSLPYPAPKKIQDSAENLGEVLRGDRIENSLYVFKMREPQMCNVVGKIKLDAKNAKEFKEKINDEYRVNMILDNLPLVVPIKRNDQDSTVYQLGFHVGLKGQYTGSKEEKYFIHNHLAFTVKYHRDVQTESARIVGFEVKPFSVKHEYDGKWDDKKTRLTTCDPHAKHTVVNNNSPQEVEESKEIIFTYDVDFQESDVKWASRWDAYLLMNDDQIHWFSIVNSLMIVLFLSGMVAMIMLRTLYRDIAKYNELETQEEAQEETGWKLVHGDVFRPPNNSDLLCVYVGTGVQFFGMILVTMIFAILGFLSPSNRGGLMTAMLLVWVFMGIFAGYSSTRLYKMFKGSEWKRIALRTATLFPAIVSVIFFILNALIWGQKSSGAVPFGTMFALVFLWFGISVPLVFVGSYIGFKNLQLRIL*