AlfalfaGEDB | MsG0180005381.01

M. sativa cultivar ZhongmuNo.1 / MsG0180005381.01

KEGG: K17805
GO: -
PFAM: PF03656

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180005381.01.T01	XP_003610296.2	87.013	154	17	2	189	339	37	190	6.02E-87	270

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180005381.01.T01	Q93VV9	57.5	80	32	1	111	188	31	110	1.51E-22	94.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180005381.01.T01	G7JFL0	86.928	153	17	2	190	339	1	153	2.44e-86	266

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0180005381.01	MsG0180006023.01	0.803441	3.481029e-49	1.749421e-46
MsG0180005381.01	MsG0280010389.01	0.821945	3.081549e-53	2.543167e-50
MsG0180005381.01	MsG0280011070.01	0.804821	1.796802e-49	9.357111e-47
MsG0180005381.01	MsG0480020090.01	0.802414	5.673517e-49	2.777625e-46
MsG0180005381.01	MsG0580024073.01	0.802154	6.418066e-49	3.121237e-46
MsG0180005381.01	MsG0580027628.01	0.810104	1.360453e-50	8.129418e-48
MsG0180005381.01	MsG0580028000.01	0.805299	1.427509e-49	7.525311e-47
MsG0180005381.01	MsG0580029189.01	0.800958	1.128594e-48	5.325166e-46
MsG0180005381.01	MsG0780038444.01	0.801291	9.647962e-49	4.590572e-46
MsG0180005381.01	MsG0780039452.01	0.808038	3.768185e-50	2.131926e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180005381.01.T01	MTR_4g130640	86.928	153	17	2	190	339	1	153	6.20e-90	266
MsG0180005381.01.T01	MTR_1g098440	90.741	54	5	0	132	185	1	54	1.33e-26	100
MsG0180005381.01.T01	MTR_7g069410	45.033	151	41	5	190	339	1	110	3.89e-26	100
MsG0180005381.01.T01	MTR_4g116100	85.185	54	8	0	110	163	30	83	1.30e-23	96.7
MsG0180005381.01.T01	MTR_6g037640	64.865	74	22	2	111	182	31	102	5.37e-23	92.8
MsG0180005381.01.T01	MTR_7g031710	70.270	37	11	0	302	338	42	78	3.27e-11	59.3

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180005381.01.T01	AT3G59280	57.500	80	32	1	111	188	31	110	1.54e-23	94.4
MsG0180005381.01.T01	AT3G59280	57.500	80	32	1	111	188	31	110	2.16e-23	94.0
MsG0180005381.01.T01	AT5G61880	55.405	74	29	3	111	182	31	102	1.21e-15	72.8
MsG0180005381.01.T01	AT5G61880	55.405	74	29	3	111	182	31	102	1.21e-15	72.8
MsG0180005381.01.T01	AT5G61880	55.405	74	29	3	111	182	20	91	2.00e-15	71.6

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Find 98 sgRNAs with CRISPR-Local

Find 541 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGCCAATGGTAATTGG+AGG	0.570674	1:+91052311	MsG0180005381.01.T01:CDS
AACATTGTAGCCTCCAACTC+CGG	0.456994	1:-91058728	None:intergenic
AACCTTTACAATATCTTCCC+AGG	0.507196	1:-91054543	None:intergenic
AAGAGGACGGAAGGCATTCC+GGG	0.318867	1:+91052250	MsG0180005381.01.T01:intron
AAGATGATAGTAAACCACTA+TGG	0.482539	1:+91058405	MsG0180005381.01.T01:CDS
AAGTGAATCTTCGGGAGGAC+GGG	0.493055	1:+91052335	MsG0180005381.01.T01:CDS
AAGTTATGTACTGTTATAAA+AGG	0.298775	1:-91058904	None:intergenic
AATTGCTGGTGAAGGAGTTC+AGG	0.416502	1:+91058547	MsG0180005381.01.T01:CDS
ACAGTGACAAATCTCCATAG+TGG	0.653867	1:-91058419	None:intergenic
ACCATAACCTCTTCGGCCCC+CGG	0.502147	1:-91052368	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACTTGAACTTGATCTATG+TGG	+	Chr1:91055660-91055679	MsG0180005381.01.T01:intron	30.0%
AAATGGCAAAAAATTGTGCA+AGG	-	Chr1:91056975-91056956	None:intergenic	30.0%
AAGATCCTTAGTGAAATCAA+AGG	+	Chr1:91053130-91053149	MsG0180005381.01.T01:intron	30.0%
AAGATGATAGTAAACCACTA+TGG	+	Chr1:91058405-91058424	MsG0180005381.01.T01:CDS	30.0%
AAGTCCACACAATCTAAATA+AGG	-	Chr1:91057208-91057227	None:intergenic	30.0%
AATCAACCAATTGAAACTTG+GGG	-	Chr1:91055892-91055911	None:intergenic	30.0%
ATAACTTATCAGGTAGTGTT+AGG	-	Chr1:91054070-91054089	None:intergenic	30.0%
ATAAGGCATGGATGTAAATT+AGG	-	Chr1:91057191-91057210	None:intergenic	30.0%
ATAGTGGTTTACTATCATCT+TGG	-	Chr1:91058406-91058425	None:intergenic	30.0%
ATAGTTACTGTTGTGAATTC+CGG	-	Chr1:91053611-91053630	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	91051867	91058992	91051867	ID=MsG0180005381.01;Name=MsG0180005381.01
Chr1	mRNA	91051867	91058992	91051867	ID=MsG0180005381.01.T01;Parent=MsG0180005381.01;Name=MsG0180005381.01.T01;_AED=0.40;_eAED=0.56;_QI=0\|0\|0.16\|1\|1\|1\|6\|166\|346
Chr1	exon	91051867	91051985	91051867	ID=MsG0180005381.01.T01:exon:17568;Parent=MsG0180005381.01.T01
Chr1	exon	91052112	91052193	91052112	ID=MsG0180005381.01.T01:exon:17569;Parent=MsG0180005381.01.T01
Chr1	exon	91052253	91052382	91052253	ID=MsG0180005381.01.T01:exon:17570;Parent=MsG0180005381.01.T01
Chr1	exon	91054429	91054562	91054429	ID=MsG0180005381.01.T01:exon:17571;Parent=MsG0180005381.01.T01
Chr1	exon	91054647	91054746	91054647	ID=MsG0180005381.01.T01:exon:17572;Parent=MsG0180005381.01.T01
Chr1	exon	91058351	91058992	91058351	ID=MsG0180005381.01.T01:exon:17573;Parent=MsG0180005381.01.T01
Chr1	CDS	91051867	91051985	91051867	ID=MsG0180005381.01.T01:cds;Parent=MsG0180005381.01.T01
Chr1	CDS	91052112	91052193	91052112	ID=MsG0180005381.01.T01:cds;Parent=MsG0180005381.01.T01
Chr1	CDS	91052253	91052382	91052253	ID=MsG0180005381.01.T01:cds;Parent=MsG0180005381.01.T01
Chr1	CDS	91054429	91054562	91054429	ID=MsG0180005381.01.T01:cds;Parent=MsG0180005381.01.T01
Chr1	CDS	91054647	91054746	91054647	ID=MsG0180005381.01.T01:cds;Parent=MsG0180005381.01.T01
Chr1	CDS	91058351	91058826	91058351	ID=MsG0180005381.01.T01:cds;Parent=MsG0180005381.01.T01
Chr1	three_prime_UTR	91058827	91058992	91058827	ID=MsG0180005381.01.T01:three_prime_utr;Parent=MsG0180005381.01.T01

Gene Sequence

>MsG0180005381.01.T01

ATGGGTACCAAAGGTTGCATCTTGGAGATGGAAGCAAGCATGGTTCAATGGAAGTGTATGGAAGCATTGAAGGTTGAGGTTTCGAAGCCGGTCATCCTAGCACAATCGAAGAAGGAAAAGTGGAAGCATAGTGTGTGTACGCATTCGGAAGTTGAGGTAGAGAAAGCTCAACTTGAGGTGGAGTTGATGACACCGGGAATGAGGACGGAAGGCATTCCGGGGGTTGAAGAATGTTTGACATGGCTTGTGGAATTACCGGAAAAGGCCAATGGTAATTGGAGGCAAGTGAATCTTCGGGAGGACGGGTTTGATCACTCCGGGGGCCGAAGAGATGCTACCAAAAATGGTGCCGCGCAAGAGACAATACAAAATGCGGTCCATAGAGGAAGCAAAATGATGACAGTGGAAGAGGCTCGACTGATTCTTGGCGTGACAGAGAAAACATCCTGGGAAGATATTGTAAAGAAATTTGAAACTATGTTTGAGAAAAATGCCAAGAGCTTTTACCTTCAATCCAAACTCTATCGAGCCAAGGAATTTCTAGAGGCTCTCCAACGAGACAAGGTTATGCCTCCAATAGAAGAAAGTGTTACTAGTTGGTTTGCTTCAAAAGAACCCCAAGATGATAGTAAACCACTATGGAGATTTGTCACTGTTGTGCAGAATAATGATTCTGCAGGTGGAAACAAGCTTTGGAAGTGCAACTTTTGTCAAAAAGAGGTGAGGAGTTCATACTCTATAGCGAGATTTCACTTATTGAAAATTGCTGGTGAAGGAGTTCAGGTATGTTCTTCATCATGTTCTGAGAGAAATTGGAGTACTTACTCTTTTATTCAATCTTTGAAAAGAAATAAAATGGATCGAAAAAGGGCTGAAGATTTGGTTTATGTGCATACTAATGTTGGAGTTGGAATTGAATTAGCTGAGTTATCTTTAGATGAACCGGAGTTGGAGGCTACAATGTTCTTTGATGATGGAAACGGAGGAGAGGAGACCGATACAATCCGTGTTTCCTCTGAAGTAGTGAATGTTGGACTATGA

Protein sequence

>MsG0180005381.01.T01

MGTKGCILEMEASMVQWKCMEALKVEVSKPVILAQSKKEKWKHSVCTHSEVEVEKAQLEVELMTPGMRTEGIPGVEECLTWLVELPEKANGNWRQVNLREDGFDHSGGRRDATKNGAAQETIQNAVHRGSKMMTVEEARLILGVTEKTSWEDIVKKFETMFEKNAKSFYLQSKLYRAKEFLEALQRDKVMPPIEESVTSWFASKEPQDDSKPLWRFVTVVQNNDSAGGNKLWKCNFCQKEVRSSYSIARFHLLKIAGEGVQVCSSSCSERNWSTYSFIQSLKRNKMDRKRAEDLVYVHTNVGVGIELAELSLDEPELEATMFFDDGNGGEETDTIRVSSEVVNVGL*