AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480020090.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480020090.01.T01 MTR_4g037470 99.582 479 2 0 1 479 1 479 0.0 989
MsG0480020090.01.T01 MTR_4g037470 98.121 479 0 1 1 479 1 470 0.0 965
MsG0480020090.01.T01 MTR_2g090190 78.601 486 81 7 1 479 1 470 0.0 729
MsG0480020090.01.T01 MTR_7g080170 48.690 458 188 9 51 478 50 490 5.86e-140 412
MsG0480020090.01.T01 MTR_7g021530 49.373 399 170 9 1 389 1 377 1.55e-127 377
MsG0480020090.01.T01 MTR_7g021530 53.353 343 143 5 54 389 86 418 5.78e-127 377
MsG0480020090.01.T01 MTR_7g021530 54.915 295 126 3 101 389 34 327 8.36e-114 340
MsG0480020090.01.T01 MTR_7g070510 42.619 420 197 9 62 477 57 436 3.87e-112 338
MsG0480020090.01.T01 MTR_7g080170 46.923 390 170 7 118 478 1 382 2.56e-111 335
MsG0480020090.01.T01 MTR_8g017240 47.632 380 157 10 1 379 1 339 3.20e-110 331
MsG0480020090.01.T01 MTR_7g112490 44.444 333 169 4 58 388 52 370 1.24e-99 304
MsG0480020090.01.T01 MTR_7g112490 44.444 333 169 4 58 388 70 388 2.32e-99 304
MsG0480020090.01.T01 MTR_4g013295 45.566 327 157 5 56 380 37 344 3.94e-99 302
MsG0480020090.01.T01 MTR_7g021530 46.921 341 150 8 1 331 1 320 4.60e-99 301
MsG0480020090.01.T01 MTR_7g021530 46.921 341 150 8 1 331 42 361 1.73e-98 301
MsG0480020090.01.T01 MTR_1g083690 43.072 332 166 4 49 379 41 350 5.75e-97 296
MsG0480020090.01.T01 MTR_4g120410 45.048 313 147 5 69 379 63 352 2.02e-96 295
MsG0480020090.01.T01 MTR_2g435550 45.541 314 148 5 67 379 48 339 6.47e-96 293
MsG0480020090.01.T01 MTR_2g435550 45.541 314 148 5 67 379 62 353 7.54e-96 294
MsG0480020090.01.T01 MTR_2g435550 44.164 317 149 6 67 377 62 356 2.90e-91 283
MsG0480020090.01.T01 MTR_1g016620 45.538 325 148 4 61 382 33 331 6.63e-87 270
MsG0480020090.01.T01 MTR_7g021530 47.059 204 92 4 54 250 45 239 3.70e-57 191
MsG0480020090.01.T01 MTR_7g021530 47.059 204 92 4 54 250 86 280 9.36e-57 191
MsG0480020090.01.T01 MTR_6g087000 29.966 297 151 8 105 381 124 383 6.78e-26 112
MsG0480020090.01.T01 MTR_6g087000 29.966 297 151 8 105 381 124 383 1.07e-25 111
MsG0480020090.01.T01 MTR_4g118340 26.910 301 164 7 105 387 86 348 1.16e-24 105
MsG0480020090.01.T01 MTR_2g020970 27.500 320 175 9 105 405 87 368 1.70e-22 100
MsG0480020090.01.T01 MTR_2g020970 27.797 295 157 8 105 381 87 343 2.64e-22 98.6
MsG0480020090.01.T01 MTR_5g009370 34.440 241 107 8 105 341 87 280 1.68e-21 95.9
MsG0480020090.01.T01 MTR_3g105730 28.904 301 150 10 91 387 28 268 1.59e-19 89.0
MsG0480020090.01.T01 MTR_3g105730 28.904 301 150 10 91 387 50 290 2.14e-19 89.0
MsG0480020090.01.T01 MTR_1g014640 29.851 268 133 8 91 356 93 307 3.42e-19 89.0
MsG0480020090.01.T01 MTR_1g013400 29.851 268 133 8 91 356 93 307 3.42e-19 89.0
MsG0480020090.01.T01 MTR_1g115570 30.435 253 118 9 105 356 126 321 3.44e-19 89.4
MsG0480020090.01.T01 MTR_6g081850 30.045 223 117 7 174 378 117 318 8.03e-19 87.8
MsG0480020090.01.T01 MTR_8g102550 30.380 237 114 7 105 338 152 340 3.56e-18 86.7
MsG0480020090.01.T01 MTR_5g080680 33.708 178 89 5 175 339 167 328 7.68e-18 85.5
MsG0480020090.01.T01 MTR_4g125810 28.340 247 131 8 97 338 240 445 1.17e-17 85.9
MsG0480020090.01.T01 MTR_3g068200 34.595 185 92 6 168 339 153 321 1.91e-17 84.3
MsG0480020090.01.T01 MTR_3g104710 29.388 245 132 9 97 338 278 484 8.93e-17 83.2
MsG0480020090.01.T01 MTR_2g078760 35.556 180 90 8 202 379 98 253 1.23e-15 77.0
MsG0480020090.01.T01 MTR_1g015110 27.869 244 135 6 98 338 283 488 2.02e-15 79.0
MsG0480020090.01.T01 MTR_2g078760 35.556 180 90 8 202 379 177 332 2.35e-15 77.4
MsG0480020090.01.T01 MTR_8g463130 34.463 177 98 7 181 356 78 237 2.44e-15 76.3
MsG0480020090.01.T01 MTR_8g463130 35.028 177 97 8 181 356 106 265 2.88e-15 76.6
MsG0480020090.01.T01 MTR_0015s0140 26.349 315 173 13 102 387 76 360 3.38e-15 77.8
MsG0480020090.01.T01 MTR_3g032660 26.911 327 159 14 96 380 59 347 4.39e-15 77.4
MsG0480020090.01.T01 MTR_3g032700 26.911 327 159 14 96 380 59 347 7.00e-15 77.0
MsG0480020090.01.T01 MTR_1g086350 26.531 294 159 12 75 358 73 319 1.96e-14 75.1
MsG0480020090.01.T01 MTR_1g086350 26.531 294 159 12 75 358 89 335 2.16e-14 75.1
MsG0480020090.01.T01 MTR_4g094208 30.645 186 108 8 175 356 92 260 4.99e-14 72.8
MsG0480020090.01.T01 MTR_1g028300 29.572 257 121 9 88 339 129 330 6.60e-14 73.6
MsG0480020090.01.T01 MTR_1g086350 27.240 279 147 11 90 358 1 233 1.13e-13 72.0
MsG0480020090.01.T01 MTR_3g091060 31.481 162 93 4 178 338 162 306 4.50e-13 70.9
MsG0480020090.01.T01 MTR_8g074930 26.459 257 132 12 177 387 4 249 4.50e-13 70.1
MsG0480020090.01.T01 MTR_5g024340 25.833 240 118 7 105 339 124 308 5.73e-13 70.9
MsG0480020090.01.T01 MTR_8g074930 26.087 253 138 10 177 387 116 361 7.89e-13 70.5
MsG0480020090.01.T01 MTR_0015s0140 28.095 210 122 8 206 387 98 306 9.67e-13 69.7
MsG0480020090.01.T01 MTR_7g090530 27.273 286 149 11 96 358 60 309 1.03e-12 70.1
MsG0480020090.01.T01 MTR_3g105880 29.682 283 151 12 82 339 28 287 1.68e-12 69.3
MsG0480020090.01.T01 MTR_7g081020 29.224 219 109 11 206 387 149 358 2.61e-12 68.6
MsG0480020090.01.T01 MTR_3g032590 27.341 267 123 10 194 401 137 391 3.85e-12 68.6
MsG0480020090.01.T01 MTR_3g105880 29.682 283 151 12 82 339 28 287 4.68e-12 67.4
MsG0480020090.01.T01 MTR_4g123080 24.405 336 185 12 55 377 65 344 5.79e-12 67.8
MsG0480020090.01.T01 MTR_4g123080 24.405 336 185 12 55 377 47 326 6.08e-12 67.4
MsG0480020090.01.T01 MTR_1g050520 31.548 168 96 5 177 339 457 610 1.66e-11 67.0
MsG0480020090.01.T01 MTR_1g106855 24.107 336 192 13 98 399 54 360 5.34e-11 64.7
MsG0480020090.01.T01 MTR_2g078760 39.535 129 61 7 202 329 177 289 8.99e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480020090.01.T01 AT4G03415 74.845 485 99 7 1 479 1 468 0.0 668
MsG0480020090.01.T01 AT4G03415 74.845 485 99 7 1 479 1 468 0.0 668
MsG0480020090.01.T01 AT4G03415 74.845 485 99 7 1 479 1 468 0.0 668
MsG0480020090.01.T01 AT1G03590 67.220 482 127 7 1 475 1 458 0.0 613
MsG0480020090.01.T01 AT1G16220 47.097 465 213 8 35 479 35 486 1.52e-142 418
MsG0480020090.01.T01 AT3G02750 46.562 509 214 12 1 472 1 488 3.68e-137 404
MsG0480020090.01.T01 AT3G02750 46.562 509 214 12 1 472 1 488 3.68e-137 404
MsG0480020090.01.T01 AT1G79630 47.149 456 194 9 57 479 54 495 6.01e-135 399
MsG0480020090.01.T01 AT1G79630 47.149 456 194 9 57 479 58 499 6.26e-135 399
MsG0480020090.01.T01 AT5G36250 47.260 438 169 8 51 472 52 443 4.42e-131 387
MsG0480020090.01.T01 AT3G02750 46.029 491 180 10 51 472 49 523 3.87e-129 385
MsG0480020090.01.T01 AT5G36250 46.018 452 168 9 51 472 52 457 3.01e-127 378
MsG0480020090.01.T01 AT1G79630 47.445 411 179 7 101 479 24 429 9.65e-123 365
MsG0480020090.01.T01 AT1G79630 47.445 411 179 7 101 479 24 429 9.65e-123 365
MsG0480020090.01.T01 AT1G79630 52.427 309 137 3 176 479 86 389 7.61e-110 331
MsG0480020090.01.T01 AT1G79630 52.427 309 137 3 176 479 86 389 7.61e-110 331
MsG0480020090.01.T01 AT1G79630 52.427 309 137 3 176 479 86 389 7.61e-110 331
MsG0480020090.01.T01 AT1G79630 52.427 309 137 3 176 479 86 389 7.61e-110 331
MsG0480020090.01.T01 AT5G01700 46.857 350 161 5 58 406 39 364 1.05e-100 307
MsG0480020090.01.T01 AT5G01700 47.917 336 150 5 72 406 4 315 4.77e-100 303
MsG0480020090.01.T01 AT3G05640 44.410 322 153 3 58 379 54 349 1.01e-98 301
MsG0480020090.01.T01 AT3G05640 44.410 322 153 3 58 379 54 349 1.01e-98 301
MsG0480020090.01.T01 AT3G05640 44.410 322 153 3 58 379 54 349 1.01e-98 301
MsG0480020090.01.T01 AT5G27930 42.165 351 175 4 32 378 27 353 2.98e-98 300
MsG0480020090.01.T01 AT5G27930 42.165 351 175 4 32 378 27 353 2.98e-98 300
MsG0480020090.01.T01 AT5G36250 50.685 292 122 5 51 329 52 334 8.53e-98 298
MsG0480020090.01.T01 AT3G16800 41.009 317 156 5 65 379 61 348 5.77e-81 255
MsG0480020090.01.T01 AT3G16800 41.009 317 156 5 65 379 61 348 5.77e-81 255
MsG0480020090.01.T01 AT3G16800 41.009 317 156 5 65 379 61 348 5.77e-81 255
MsG0480020090.01.T01 AT5G27930 43.284 268 130 4 60 326 55 301 3.23e-77 244
MsG0480020090.01.T01 AT5G26010 43.408 311 142 6 73 382 50 327 1.77e-76 243
MsG0480020090.01.T01 AT4G32950 38.441 372 170 8 17 386 9 323 4.31e-76 242
MsG0480020090.01.T01 AT3G16800 41.026 273 140 3 108 379 1 253 1.26e-71 228
MsG0480020090.01.T01 AT3G16800 41.026 273 140 3 108 379 1 253 1.26e-71 228
MsG0480020090.01.T01 AT4G32950 37.500 312 136 8 17 326 9 263 4.09e-56 188
MsG0480020090.01.T01 AT3G16800 34.043 188 93 5 65 250 61 219 6.17e-30 117
MsG0480020090.01.T01 AT2G20050 29.236 301 157 8 102 384 140 402 1.13e-27 117
MsG0480020090.01.T01 AT2G20050 29.236 301 157 8 102 384 140 402 1.25e-27 117
MsG0480020090.01.T01 AT3G06270 28.777 278 137 8 105 362 88 324 6.41e-22 97.4
MsG0480020090.01.T01 AT3G11410 32.624 282 111 11 74 333 112 336 4.17e-21 95.5
MsG0480020090.01.T01 AT5G10740 30.515 272 130 8 91 358 49 265 1.19e-20 93.6
MsG0480020090.01.T01 AT5G10740 30.515 272 130 8 91 358 49 265 1.19e-20 93.6
MsG0480020090.01.T01 AT5G59220 31.317 281 121 11 74 339 119 342 1.61e-20 94.0
MsG0480020090.01.T01 AT5G24940 30.000 270 134 8 91 358 49 265 2.78e-20 93.6
MsG0480020090.01.T01 AT4G28400 37.778 180 94 9 178 356 82 244 1.52e-19 88.6
MsG0480020090.01.T01 AT4G28400 37.778 180 94 9 178 356 104 266 2.22e-19 88.6
MsG0480020090.01.T01 AT2G34740 36.667 210 104 10 175 379 150 335 2.62e-19 89.4
MsG0480020090.01.T01 AT1G07430 28.223 287 141 9 74 347 128 362 5.47e-19 89.7
MsG0480020090.01.T01 AT4G31750 29.252 294 144 11 91 380 49 282 9.90e-19 87.0
MsG0480020090.01.T01 AT4G31750 29.252 294 144 11 91 380 49 282 1.10e-18 87.0
MsG0480020090.01.T01 AT4G31750 29.252 294 144 11 91 380 49 282 1.10e-18 87.0
MsG0480020090.01.T01 AT1G72770 33.603 247 113 11 105 338 238 446 1.21e-18 89.0
MsG0480020090.01.T01 AT1G72770 33.603 247 113 11 105 338 238 446 1.21e-18 89.0
MsG0480020090.01.T01 AT1G72770 33.603 247 113 11 105 338 238 446 1.21e-18 89.0
MsG0480020090.01.T01 AT1G78200 34.239 184 106 5 176 358 54 223 6.91e-18 83.2
MsG0480020090.01.T01 AT1G78200 34.239 184 106 5 176 358 54 223 6.91e-18 83.2
MsG0480020090.01.T01 AT1G78200 33.333 204 115 6 176 378 99 282 8.41e-18 84.0
MsG0480020090.01.T01 AT1G78200 33.333 204 115 6 176 378 99 282 8.41e-18 84.0
MsG0480020090.01.T01 AT1G78200 33.333 204 115 6 176 378 99 282 8.41e-18 84.0
MsG0480020090.01.T01 AT1G43900 30.400 250 119 7 105 353 154 349 1.95e-16 81.3
MsG0480020090.01.T01 AT5G57050 29.487 234 123 7 105 338 160 351 5.06e-16 80.5
MsG0480020090.01.T01 AT5G57050 29.487 234 123 7 105 338 120 311 5.15e-16 80.1
MsG0480020090.01.T01 AT2G20630 36.264 182 98 9 176 356 98 262 5.26e-16 78.6
MsG0480020090.01.T01 AT4G26080 30.769 234 118 9 105 338 172 361 7.34e-16 80.1
MsG0480020090.01.T01 AT2G20630 38.462 156 79 7 202 356 123 262 8.78e-16 78.2
MsG0480020090.01.T01 AT1G34750 31.606 193 112 8 168 358 93 267 9.71e-16 77.8
MsG0480020090.01.T01 AT1G34750 31.606 193 112 8 168 358 93 267 9.71e-16 77.8
MsG0480020090.01.T01 AT1G34750 31.606 193 112 8 168 358 93 267 9.71e-16 77.8
MsG0480020090.01.T01 AT5G53140 28.287 251 126 7 107 356 134 331 2.21e-15 78.6
MsG0480020090.01.T01 AT5G53140 28.287 251 126 7 107 356 134 331 2.21e-15 78.6
MsG0480020090.01.T01 AT1G17550 30.204 245 117 10 105 334 237 442 6.34e-15 77.4
MsG0480020090.01.T01 AT1G17550 30.204 245 117 10 105 334 237 442 6.34e-15 77.4
MsG0480020090.01.T01 AT5G51760 31.553 206 113 6 166 359 153 342 3.71e-14 74.3
MsG0480020090.01.T01 AT5G51760 31.553 206 113 6 166 359 183 372 3.93e-14 74.7
MsG0480020090.01.T01 AT5G06750 25.559 313 172 12 103 383 80 363 4.42e-14 74.3
MsG0480020090.01.T01 AT5G06750 25.559 313 172 12 103 383 80 363 4.42e-14 74.3
MsG0480020090.01.T01 AT3G15260 33.333 186 103 8 175 356 104 272 1.67e-13 71.2
MsG0480020090.01.T01 AT3G15260 33.333 186 103 8 175 356 104 272 1.67e-13 71.2
MsG0480020090.01.T01 AT4G28400 37.908 153 77 9 178 329 104 239 1.71e-13 70.9
MsG0480020090.01.T01 AT1G22280 31.863 204 115 8 176 378 100 280 2.17e-13 70.9
MsG0480020090.01.T01 AT1G22280 31.863 204 115 8 176 378 106 286 2.30e-13 70.9
MsG0480020090.01.T01 AT1G18030 25.792 221 125 6 176 378 149 348 9.36e-13 69.7
MsG0480020090.01.T01 AT3G62260 27.778 270 136 9 99 356 21 243 5.17e-12 67.0
MsG0480020090.01.T01 AT5G06750 25.984 254 154 9 162 383 30 281 6.44e-12 67.0
MsG0480020090.01.T01 AT3G62260 28.309 272 132 10 99 356 110 332 6.94e-12 67.4
MsG0480020090.01.T01 AT3G62260 28.309 272 132 10 99 356 111 333 7.63e-12 67.4
MsG0480020090.01.T01 AT1G34750 31.792 173 96 9 168 338 93 245 1.25e-11 65.1
MsG0480020090.01.T01 AT1G07160 28.502 207 130 5 173 379 188 376 1.31e-11 66.6
MsG0480020090.01.T01 AT3G17250 24.911 281 158 10 105 377 158 393 2.17e-11 66.2
MsG0480020090.01.T01 AT1G48040 27.344 256 128 10 105 350 116 323 2.37e-11 65.9
MsG0480020090.01.T01 AT2G40860 28.899 218 128 7 150 359 438 636 2.40e-11 66.6
MsG0480020090.01.T01 AT2G40860 27.419 248 145 8 150 389 340 560 2.70e-11 66.2
MsG0480020090.01.T01 AT2G40860 27.419 248 145 8 150 389 438 658 3.24e-11 66.2
MsG0480020090.01.T01 AT3G51470 29.240 171 89 7 176 339 145 290 4.48e-11 64.7
MsG0480020090.01.T01 AT3G51470 28.402 169 93 5 176 339 101 246 5.21e-11 64.3

Find 119 sgRNAs with CRISPR-Local

Find 250 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATGTTCATGTTCACTTTAT+TGG 0.154194 4:+33844504 MsG0480020090.01.T01:CDS
CAGTAAAATTGCTTTCATTT+TGG 0.208933 4:+33844718 MsG0480020090.01.T01:CDS
AATCTCTTCATGGGATATAT+TGG 0.215176 4:+33845059 MsG0480020090.01.T01:CDS
CATGGAGTCATTGCTGTCTT+TGG 0.215963 4:-33845105 None:intergenic
ACCATTCAGAGCAACCATTC+TGG 0.300542 4:+33847140 MsG0480020090.01.T01:CDS
ATCTCTTCATGGGATATATT+GGG 0.314474 4:+33845060 MsG0480020090.01.T01:CDS
AAACTCGAAGTGGTTTGATT+TGG 0.316314 4:+33847525 MsG0480020090.01.T01:three_prime_UTR
AACTCGAAGTGGTTTGATTT+GGG 0.333922 4:+33847526 MsG0480020090.01.T01:three_prime_UTR
CTACAGAAGCAGTCTAGATT+TGG 0.335148 4:-33844915 None:intergenic
TGATTTGGGTAATTAGTTTA+CGG 0.341139 4:+33847540 MsG0480020090.01.T01:three_prime_UTR
CCAGGGTTCAAATCTCTTCA+TGG 0.346038 4:+33845049 MsG0480020090.01.T01:intron
AGAATCAGATTATGATGAAC+AGG 0.348246 4:+33847103 MsG0480020090.01.T01:CDS
AATGACCCACTTGGCAAATC+AGG 0.352742 4:-33845158 None:intergenic
ATCATCAGCAGCAAGGATTC+TGG 0.370635 4:+33846983 MsG0480020090.01.T01:CDS
TGCTAGGTAAGGATGATAAT+TGG 0.373974 4:-33844384 None:intergenic
TTAGCAATGGCTAGGGCGTT+TGG 0.378040 4:+33845360 MsG0480020090.01.T01:CDS
CTTGAATCTGAGTGTTTACC+AGG 0.382862 4:-33847425 None:intergenic
TTCATTGTTCTTGCGTCAGA+TGG 0.392602 4:+33845459 MsG0480020090.01.T01:CDS
GATTTCTGCTTGAAGGAGTA+TGG 0.392742 4:+33845384 MsG0480020090.01.T01:CDS
AGATCAAAACTGGTTAGGTT+TGG 0.408331 4:+33847298 MsG0480020090.01.T01:CDS
GATCTTTCTTCAGAAAATCT+AGG 0.410352 4:-33847356 None:intergenic
TGTCCATCATCTGATTCAAC+TGG 0.411905 4:-33847167 None:intergenic
CTTCAGAAAATCTAGGAAGT+TGG 0.412133 4:-33847349 None:intergenic
GTTTGGAGATTTCTGCTTGA+AGG 0.422853 4:+33845377 MsG0480020090.01.T01:CDS
CTCTTGAATCGAAACAAAAT+AGG 0.424477 4:+33844745 MsG0480020090.01.T01:CDS
AGCAGCCGGTGAGAAAATTC+AGG 0.426271 4:-33845420 None:intergenic
TTTCACTAATGGAAAGAGTC+GGG 0.431687 4:+33844411 MsG0480020090.01.T01:CDS
CCATTCAGAGCAACCATTCT+GGG 0.439997 4:+33847141 MsG0480020090.01.T01:CDS
GGTGAAGATCAAAACTGGTT+AGG 0.440345 4:+33847293 MsG0480020090.01.T01:CDS
CCCAGAATGGTTGCTCTGAA+TGG 0.442295 4:-33847141 None:intergenic
TGGGGATTCTCGAGCAATCA+TGG 0.443019 4:+33845079 MsG0480020090.01.T01:CDS
ATTCAACTGGATTCCCAGAA+TGG 0.448330 4:-33847154 None:intergenic
GGGTCGCAAGGGAATTAATC+AGG 0.449317 4:+33844456 MsG0480020090.01.T01:CDS
TGTGGTGTCTTTGATGGTCA+TGG 0.456999 4:+33844651 MsG0480020090.01.T01:CDS
TGCTTCGAAATTTGTTTCTG+TGG 0.464700 4:+33844313 MsG0480020090.01.T01:CDS
TTCGTGCATATTTACACAGC+AGG 0.465091 4:+33844435 MsG0480020090.01.T01:CDS
ACCACAAAATATCGTATCTT+CGG 0.468013 4:-33844634 None:intergenic
CATCAGGTGAAGATCAAAAC+TGG 0.468748 4:+33847288 MsG0480020090.01.T01:CDS
GTTGAAGATGAAGCAGCATC+AGG 0.478334 4:+33847272 MsG0480020090.01.T01:CDS
GTAAAGTTCCTTCTCAAAGA+TGG 0.483162 4:-33847200 None:intergenic
ATTGAACATGTTAGATCCGC+GGG 0.484081 4:-33847570 None:intergenic
TCTGGTAAATTCAGCTGCTC+GGG 0.485878 4:+33847001 MsG0480020090.01.T01:CDS
AGCCACACCCTAGGAACTTC+AGG 0.487256 4:-33845315 None:intergenic
TTCTGGTAAATTCAGCTGCT+CGG 0.491412 4:+33847000 MsG0480020090.01.T01:CDS
TAAATTCAGCTGCTCGGGAA+TGG 0.495611 4:+33847006 MsG0480020090.01.T01:CDS
AACCCTGGTGCGTCATCAAA+AGG 0.497791 4:-33845339 None:intergenic
AAGATGAGCCTGAAGTTCCT+AGG 0.498159 4:+33845307 MsG0480020090.01.T01:CDS
AATTATCATCCTTACCTAGC+AGG 0.505801 4:+33844386 MsG0480020090.01.T01:CDS
TTCTCAGACTCACCACAGTC+TGG 0.510311 4:-33844801 None:intergenic
ATCTGTGACTGTAGTAAAGC+AGG 0.511946 4:+33844947 MsG0480020090.01.T01:CDS
CAAAACTGGTTAGGTTTGGA+AGG 0.513854 4:+33847302 MsG0480020090.01.T01:CDS
CAGGGTTCAAATCTCTTCAT+GGG 0.514984 4:+33845050 MsG0480020090.01.T01:intron
ATCGACAGACACTGCTCCGT+TGG 0.516366 4:-33847249 None:intergenic
CACCAGGGTTAGCAATGGCT+AGG 0.517626 4:+33845352 MsG0480020090.01.T01:CDS
AAACCACTTCGAGTTTGTCT+AGG 0.521629 4:-33847518 None:intergenic
AAACAAATTTCGAAGCAAGA+TGG 0.526661 4:-33844307 None:intergenic
GTCGAAGTACTTGTAGCAGC+GGG 0.528583 4:+33844263 MsG0480020090.01.T01:CDS
AGCCTGAAGTTCCTAGGGTG+TGG 0.534994 4:+33845313 MsG0480020090.01.T01:CDS
ATTTACACAGCAGGGTCGCA+AGG 0.535677 4:+33844444 MsG0480020090.01.T01:CDS
TCATTGTTCTTGCGTCAGAT+GGG 0.536426 4:+33845460 MsG0480020090.01.T01:CDS
AGTGAAAATCCTGCTAGGTA+AGG 0.538054 4:-33844395 None:intergenic
CTTGAATTTCTTGCTTCATG+AGG 0.542683 4:+33847384 MsG0480020090.01.T01:exon
CAGACAAAACTTGCTTCAAA+CGG 0.544074 4:+33844769 MsG0480020090.01.T01:CDS
TGTGGAGTTCAGTTTATCCT+CGG 0.553472 4:-33844835 None:intergenic
ACTTGTAGCAGCGGGAGCAA+TGG 0.557749 4:+33844271 MsG0480020090.01.T01:CDS
GATCTCTGTCTGTGAGCAGC+CGG 0.558467 4:-33845434 None:intergenic
CAAAGACAGCAATGACTCCA+TGG 0.558918 4:+33845106 MsG0480020090.01.T01:CDS
AATCAAGCAGTGCAAGGGTA+GGG 0.560069 4:+33845272 MsG0480020090.01.T01:CDS
AATCTAGACTGCTTCTGTAG+TGG 0.563578 4:+33844918 MsG0480020090.01.T01:CDS
ATCTTGTTGCGCGTAAAGTG+AGG 0.564465 4:+33844685 MsG0480020090.01.T01:CDS
GGGAATTAATCAGGATGCCA+TGG 0.565143 4:+33844465 MsG0480020090.01.T01:CDS
AGACCATGGACAAAGAGCTT+AGG 0.566360 4:+33844886 MsG0480020090.01.T01:CDS
AATCCAGTTGAATCAGATGA+TGG 0.567117 4:+33847164 MsG0480020090.01.T01:CDS
TCTCTTCATGGGATATATTG+GGG 0.568937 4:+33845061 MsG0480020090.01.T01:CDS
ACCAGGGTTAGCAATGGCTA+GGG 0.571256 4:+33845353 MsG0480020090.01.T01:CDS
GGAAAGAATCAAGCAGTGCA+AGG 0.573684 4:+33845266 MsG0480020090.01.T01:CDS
AAAACTGGTTAGGTTTGGAA+GGG 0.578580 4:+33847303 MsG0480020090.01.T01:CDS
AATTGAACATGTTAGATCCG+CGG 0.578821 4:-33847571 None:intergenic
AGATGAGCCTGAAGTTCCTA+GGG 0.581249 4:+33845308 MsG0480020090.01.T01:CDS
AGACCTAAGCTCTTTGTCCA+TGG 0.584175 4:-33844889 None:intergenic
TAACTGTTTATTGTAGTACC+TGG 0.586555 4:+33847407 MsG0480020090.01.T01:three_prime_UTR
AGTCGAAGTACTTGTAGCAG+CGG 0.586885 4:+33844262 MsG0480020090.01.T01:CDS
GGGGATTCTCGAGCAATCAT+GGG 0.587725 4:+33845080 MsG0480020090.01.T01:CDS
CCATTAGTGAAAATCCTGCT+AGG 0.589167 4:-33844400 None:intergenic
ATCAGGATGCCATGGTTGTG+TGG 0.596198 4:+33844473 MsG0480020090.01.T01:CDS
CATTGTTCTTGCGTCAGATG+GGG 0.596634 4:+33845461 MsG0480020090.01.T01:CDS
GAATCAAGCAGTGCAAGGGT+AGG 0.597342 4:+33845271 MsG0480020090.01.T01:CDS
GAAAGAATCAAGCAGTGCAA+GGG 0.598000 4:+33845267 MsG0480020090.01.T01:CDS
GGTGGTTGAGATAGTATCAT+CGG 0.598952 4:+33846950 MsG0480020090.01.T01:CDS
AAACCTAGACAAACTCGAAG+TGG 0.598952 4:+33847515 MsG0480020090.01.T01:three_prime_UTR
AATCGGAGCCATCTTTGAGA+AGG 0.600237 4:+33847192 MsG0480020090.01.T01:CDS
CTTGCTGCTGATGATCGTGT+TGG 0.601429 4:-33846975 None:intergenic
TCAAAAGGCAGCCACACCCT+AGG 0.606675 4:-33845324 None:intergenic
GCCCTAGCCATTGCTAACCC+TGG 0.606931 4:-33845354 None:intergenic
AAACTGGTTAGGTTTGGAAG+GGG 0.609381 4:+33847304 MsG0480020090.01.T01:CDS
AGGATAAACTGAACTCCACA+TGG 0.618329 4:+33844838 MsG0480020090.01.T01:CDS
TTCACTAATGGAAAGAGTCG+GGG 0.619236 4:+33844412 MsG0480020090.01.T01:CDS
TCTGTGGACAAAAGAGAGCA+AGG 0.624356 4:+33844329 MsG0480020090.01.T01:CDS
TTTACACAGCAGGGTCGCAA+GGG 0.624371 4:+33844445 MsG0480020090.01.T01:CDS
TGAGAAGGATTGTTCTGCCG+AGG 0.624451 4:+33844818 MsG0480020090.01.T01:CDS
TCTTGTTGCGCGTAAAGTGA+GGG 0.625856 4:+33844686 MsG0480020090.01.T01:CDS
TATGAAAGCTTCTCTCCATG+TGG 0.626211 4:-33844853 None:intergenic
AGTCAACTGAATTGCCACCA+TGG 0.629372 4:-33845123 None:intergenic
TCGTGCATATTTACACAGCA+GGG 0.634119 4:+33844436 MsG0480020090.01.T01:CDS
ACTGGTGAATTAGGCTACCA+AGG 0.634135 4:-33847489 None:intergenic
TCAGGATGCCATGGTTGTGT+GGG 0.634495 4:+33844474 MsG0480020090.01.T01:CDS
TTTGATGGTCATGGTCCACA+AGG 0.637535 4:+33844660 MsG0480020090.01.T01:CDS
AGACTGTGGTGAGTCTGAGA+AGG 0.641591 4:+33844803 MsG0480020090.01.T01:CDS
TCAGAAGAAAATGAGACCAA+CGG 0.642277 4:+33847233 MsG0480020090.01.T01:CDS
TTGGTTGGGAATAGGAGAAG+CGG 0.643491 4:+33845245 MsG0480020090.01.T01:intron
ACTTACTTCCCACACAACCA+TGG 0.645722 4:-33844482 None:intergenic
CATAAAAGCATACAAGACCA+TGG 0.649143 4:+33844872 MsG0480020090.01.T01:CDS
AGTTTACGGTTTCAAACCCG+CGG 0.666192 4:+33847554 MsG0480020090.01.T01:three_prime_UTR
GAATCAGATTATGATGAACA+GGG 0.666739 4:+33847104 MsG0480020090.01.T01:CDS
TGACGCACCAGGGTTAGCAA+TGG 0.672958 4:+33845347 MsG0480020090.01.T01:CDS
CAACACGATCATCAGCAGCA+AGG 0.675811 4:+33846976 MsG0480020090.01.T01:CDS
CGCGCAACAAGATGACCTTG+TGG 0.685405 4:-33844675 None:intergenic
CGGAACATAACACCAGACTG+TGG 0.709411 4:+33844789 MsG0480020090.01.T01:CDS
AGACAGCAATGACTCCATGG+TGG 0.756556 4:+33845109 MsG0480020090.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAAATTATTTAAAAAATAGA+TGG - Chr4:33846122-33846141 None:intergenic 10.0%
!!! ATTTTTTTTTTTGGTTTTTT+TGG + Chr4:33847591-33847610 MsG0480020090.01.T01:three_prime_UTR 10.0%
!!! TTTTCTATTTTTTATTTTTC+TGG + Chr4:33845536-33845555 MsG0480020090.01.T01:intron 10.0%
!! CAAAAATACAGATAATAATT+AGG - Chr4:33844601-33844620 None:intergenic 15.0%
!! GAAATTAAGAAAAACATAAA+AGG - Chr4:33845021-33845040 None:intergenic 15.0%
!! TATACTAAAAACTATGATAA+GGG - Chr4:33846842-33846861 None:intergenic 15.0%
!! TTATACTAAAAACTATGATA+AGG - Chr4:33846843-33846862 None:intergenic 15.0%
!!! ACATGTTCAATTTTTTTTTT+TGG + Chr4:33847582-33847601 MsG0480020090.01.T01:three_prime_UTR 15.0%
!!! ATTATTATCTGTATTTTTGT+AGG + Chr4:33844602-33844621 MsG0480020090.01.T01:intron 15.0%
!!! TCTTTTTTTAAGTTATATGA+GGG + Chr4:33844547-33844566 MsG0480020090.01.T01:intron 15.0%
!! AAATCATATAAATTCGACTT+AGG - Chr4:33846468-33846487 None:intergenic 20.0%
!! ATAACTTAAAAAAAGAGTCA+TGG - Chr4:33844543-33844562 None:intergenic 20.0%
!! ATGTTAATAGTAATGAATTG+TGG + Chr4:33845660-33845679 MsG0480020090.01.T01:intron 20.0%
!! CAAAACATTGGAAAAAAATT+CGG + Chr4:33846218-33846237 MsG0480020090.01.T01:intron 20.0%
!! GATTAAATAGTACAAAACAT+TGG + Chr4:33846206-33846225 MsG0480020090.01.T01:intron 20.0%
!! TTTCTAACTTAATTCCAATT+TGG + Chr4:33845226-33845245 MsG0480020090.01.T01:intron 20.0%
!!! AATTTGTAAATAACTTGTGT+AGG + Chr4:33846802-33846821 MsG0480020090.01.T01:intron 20.0%
!!! ATGGTAAGATTATTTTTTCA+TGG - Chr4:33845594-33845613 None:intergenic 20.0%
!!! CTCTTTTTTTAAGTTATATG+AGG + Chr4:33844546-33844565 MsG0480020090.01.T01:intron 20.0%
!!! GATTTTTTTTTTTGTTGAAG+TGG + Chr4:33847451-33847470 MsG0480020090.01.T01:three_prime_UTR 20.0%
! AAATAACAACCAATCATAGA+AGG + Chr4:33846012-33846031 MsG0480020090.01.T01:intron 25.0%
! AACTTAATTCCAATTTGGTT+GGG + Chr4:33845231-33845250 MsG0480020090.01.T01:intron 25.0%
! AATAACAACCAATCATAGAA+GGG + Chr4:33846013-33846032 MsG0480020090.01.T01:intron 25.0%
! ATTGGAATTAAGTTAGAAAC+AGG - Chr4:33845225-33845244 None:intergenic 25.0%
! CGTCAGAGAATAAATAATAT+TGG - Chr4:33845187-33845206 None:intergenic 25.0%
! CTTAATTTCTTAACTTACCA+GGG + Chr4:33845032-33845051 MsG0480020090.01.T01:intron 25.0%
! GTTATCAAGTAATTTAGACT+CGG + Chr4:33846322-33846341 MsG0480020090.01.T01:intron 25.0%
! TAACTTAATTCCAATTTGGT+TGG + Chr4:33845230-33845249 MsG0480020090.01.T01:intron 25.0%
! TATGTTCATGTTCACTTTAT+TGG + Chr4:33844504-33844523 MsG0480020090.01.T01:CDS 25.0%
! TCCATATTTCATATATTTGC+AGG - Chr4:33846363-33846382 None:intergenic 25.0%
! TCTTAATTTCTTAACTTACC+AGG + Chr4:33845031-33845050 MsG0480020090.01.T01:intron 25.0%
!! CAAAATGAAAGCAATTTTAC+TGG - Chr4:33844720-33844739 None:intergenic 25.0%
!! CAGTAAAATTGCTTTCATTT+TGG + Chr4:33844718-33844737 MsG0480020090.01.T01:CDS 25.0%
!! TATGAAAATCAACTTGTTTC+TGG + Chr4:33845912-33845931 MsG0480020090.01.T01:intron 25.0%
!! TGATTTGGGTAATTAGTTTA+CGG + Chr4:33847540-33847559 MsG0480020090.01.T01:three_prime_UTR 25.0%
!! TGTTTTGTACTATTTAATCC+AGG - Chr4:33846205-33846224 None:intergenic 25.0%
!!! AGAAACAAGTTGATTTTCAT+AGG - Chr4:33845913-33845932 None:intergenic 25.0%
!!! CTTATTTTTGGATGGTAAAA+TGG + Chr4:33847076-33847095 MsG0480020090.01.T01:CDS 25.0%
!!! GAAACAAGTTGATTTTCATA+GGG - Chr4:33845912-33845931 None:intergenic 25.0%
!!! TAATGCTTTTGGTTCTAATA+TGG + Chr4:33846248-33846267 MsG0480020090.01.T01:intron 25.0%
!!! TGTTTTAAGCATTAGCAAAT+AGG + Chr4:33846089-33846108 MsG0480020090.01.T01:intron 25.0%
!!! TTTATTTTTCTGGTGTGAAT+CGG + Chr4:33845546-33845565 MsG0480020090.01.T01:intron 25.0%
AAACAAATTTCGAAGCAAGA+TGG - Chr4:33844310-33844329 None:intergenic 30.0%
AAGTTATTCTACTCAATGGT+TGG - Chr4:33845739-33845758 None:intergenic 30.0%
AATCTCTTCATGGGATATAT+TGG + Chr4:33845059-33845078 MsG0480020090.01.T01:CDS 30.0%
ACCACAAAATATCGTATCTT+CGG - Chr4:33844637-33844656 None:intergenic 30.0%
AGAATCAGATTATGATGAAC+AGG + Chr4:33847103-33847122 MsG0480020090.01.T01:CDS 30.0%
ATCTCTTCATGGGATATATT+GGG + Chr4:33845060-33845079 MsG0480020090.01.T01:CDS 30.0%
CTCTTGAATCGAAACAAAAT+AGG + Chr4:33844745-33844764 MsG0480020090.01.T01:CDS 30.0%
GAACAAGTTATTCTACTCAA+TGG - Chr4:33845743-33845762 None:intergenic 30.0%
GAATCAGATTATGATGAACA+GGG + Chr4:33847104-33847123 MsG0480020090.01.T01:CDS 30.0%
GATCTTTCTTCAGAAAATCT+AGG - Chr4:33847359-33847378 None:intergenic 30.0%
GCCTGCAAATATATGAAATA+TGG + Chr4:33846359-33846378 MsG0480020090.01.T01:intron 30.0%
TAACTGTTTATTGTAGTACC+TGG + Chr4:33847407-33847426 MsG0480020090.01.T01:three_prime_UTR 30.0%
! ATATTTTGTGGTGTCTTTGA+TGG + Chr4:33844645-33844664 MsG0480020090.01.T01:CDS 30.0%
! CTTGGTATTTTTCTAGGTTT+GGG + Chr4:33846908-33846927 MsG0480020090.01.T01:intron 30.0%
! GAAAGGAATTAGACTTTTCA+AGG + Chr4:33846278-33846297 MsG0480020090.01.T01:intron 30.0%
! GATTCTCTTGGTATTTTTCT+AGG + Chr4:33846902-33846921 MsG0480020090.01.T01:intron 30.0%
! GTATCTGATTTTCAATGAGT+GGG + Chr4:33845989-33846008 MsG0480020090.01.T01:intron 30.0%
! TCTTGGTATTTTTCTAGGTT+TGG + Chr4:33846907-33846926 MsG0480020090.01.T01:intron 30.0%
! TTTTCACTAATGGAAAGAGT+CGG + Chr4:33844410-33844429 MsG0480020090.01.T01:CDS 30.0%
!! ATCAGATGATGGACAAAAAT+CGG + Chr4:33847175-33847194 MsG0480020090.01.T01:CDS 30.0%
!! TGTGTCTAACGTTTTTGATT+TGG + Chr4:33846602-33846621 MsG0480020090.01.T01:intron 30.0%
!!! ATCAGAATTTTCAAGTAACC+TGG + Chr4:33846184-33846203 MsG0480020090.01.T01:intron 30.0%
!!! GTGTCTAACGTTTTTGATTT+GGG + Chr4:33846603-33846622 MsG0480020090.01.T01:intron 30.0%
!!! TTTTGGTTCTAATATGGACT+CGG + Chr4:33846254-33846273 MsG0480020090.01.T01:intron 30.0%
AAAACTGGTTAGGTTTGGAA+GGG + Chr4:33847303-33847322 MsG0480020090.01.T01:CDS 35.0%
AAACTCGAAGTGGTTTGATT+TGG + Chr4:33847525-33847544 MsG0480020090.01.T01:three_prime_UTR 35.0%
AACATGTCCTGTTTGTCAAT+TGG + Chr4:33845783-33845802 MsG0480020090.01.T01:intron 35.0%
AACATTAACCATATGCTGGT+AGG + Chr4:33845686-33845705 MsG0480020090.01.T01:intron 35.0%
AATCCAGTTGAATCAGATGA+TGG + Chr4:33847164-33847183 MsG0480020090.01.T01:CDS 35.0%
AATTATCATCCTTACCTAGC+AGG + Chr4:33844386-33844405 MsG0480020090.01.T01:CDS 35.0%
AATTGAACATGTTAGATCCG+CGG - Chr4:33847574-33847593 None:intergenic 35.0%
ACCAGCATATGGTTAATGTT+AGG - Chr4:33845686-33845705 None:intergenic 35.0%
AGATCAAAACTGGTTAGGTT+TGG + Chr4:33847298-33847317 MsG0480020090.01.T01:CDS 35.0%
AGTGAATGTTGGAAGCTTTA+GGG - Chr4:33846872-33846891 None:intergenic 35.0%
ATTCCAATTTGGTTGGGAAT+AGG + Chr4:33845237-33845256 MsG0480020090.01.T01:intron 35.0%
CAGTTATCATCAGTGAATGT+TGG - Chr4:33846883-33846902 None:intergenic 35.0%
CGTAGAAACATAGTCAAATG+TGG + Chr4:33846649-33846668 MsG0480020090.01.T01:intron 35.0%
CTTCAGAAAATCTAGGAAGT+TGG - Chr4:33847352-33847371 None:intergenic 35.0%
CTTGAATTTCTTGCTTCATG+AGG + Chr4:33847384-33847403 MsG0480020090.01.T01:exon 35.0%
GTAAAGTTCCTTCTCAAAGA+TGG - Chr4:33847203-33847222 None:intergenic 35.0%
GTAGGAAGGAAACTAATAAG+TGG + Chr4:33845704-33845723 MsG0480020090.01.T01:intron 35.0%
TAAGTTATATGAGGGAGACT+TGG + Chr4:33844555-33844574 MsG0480020090.01.T01:intron 35.0%
TCAGAAGAAAATGAGACCAA+CGG + Chr4:33847233-33847252 MsG0480020090.01.T01:CDS 35.0%
TCTCTTCATGGGATATATTG+GGG + Chr4:33845061-33845080 MsG0480020090.01.T01:CDS 35.0%
TGCTAGGTAAGGATGATAAT+TGG - Chr4:33844387-33844406 None:intergenic 35.0%
TGTATCCTCATCAATTAGCA+TGG - Chr4:33846434-33846453 None:intergenic 35.0%
TGTCATTGAGTGACATTGTT+GGG + Chr4:33846550-33846569 MsG0480020090.01.T01:intron 35.0%
TTCAATTTCACAGCTAGACA+TGG - Chr4:33845613-33845632 None:intergenic 35.0%
TTGCACTTGCATGTTGTAAA+AGG - Chr4:33846386-33846405 None:intergenic 35.0%
TTGTCATTGAGTGACATTGT+TGG + Chr4:33846549-33846568 MsG0480020090.01.T01:intron 35.0%
TTTAGAAACATGCCTTTGCT+GGG + Chr4:33845939-33845958 MsG0480020090.01.T01:intron 35.0%
TTTCACTAATGGAAAGAGTC+GGG + Chr4:33844411-33844430 MsG0480020090.01.T01:CDS 35.0%
! AACTCGAAGTGGTTTGATTT+GGG + Chr4:33847526-33847545 MsG0480020090.01.T01:three_prime_UTR 35.0%
! AGGTTTTCTACTGGTGAATT+AGG - Chr4:33847501-33847520 None:intergenic 35.0%
! AGTTTGTCTAGGTTTTCTAC+TGG - Chr4:33847510-33847529 None:intergenic 35.0%
! CAGACAAAACTTGCTTCAAA+CGG + Chr4:33844769-33844788 MsG0480020090.01.T01:CDS 35.0%
! CATAAAAGCATACAAGACCA+TGG + Chr4:33844872-33844891 MsG0480020090.01.T01:CDS 35.0%
! CTATACCTGAATTTTCTCAC+CGG + Chr4:33845415-33845434 MsG0480020090.01.T01:CDS 35.0%
! CTGATGATAACTGATTCTCT+TGG + Chr4:33846890-33846909 MsG0480020090.01.T01:intron 35.0%
! GGTATCTGATTTTCAATGAG+TGG + Chr4:33845988-33846007 MsG0480020090.01.T01:intron 35.0%
! GTCAAATGTGGTGTTAATTG+TGG + Chr4:33846661-33846680 MsG0480020090.01.T01:intron 35.0%
! TCCGAAGATACGATATTTTG+TGG + Chr4:33844633-33844652 MsG0480020090.01.T01:CDS 35.0%
! TCGGTACATGTTAATGCTTT+TGG + Chr4:33846237-33846256 MsG0480020090.01.T01:intron 35.0%
!! GAATTAGACTTTTCAAGGCT+AGG + Chr4:33846283-33846302 MsG0480020090.01.T01:intron 35.0%
!! TGCTGTAGTGTGCTTATTTT+TGG + Chr4:33847064-33847083 MsG0480020090.01.T01:CDS 35.0%
!! TGCTTCGAAATTTGTTTCTG+TGG + Chr4:33844313-33844332 MsG0480020090.01.T01:CDS 35.0%
!! TTGGGATGTTTTAAGCAATG+AGG + Chr4:33846926-33846945 MsG0480020090.01.T01:CDS 35.0%
!!! ACACGGACATGGTTTTAAAA+AGG - Chr4:33846739-33846758 None:intergenic 35.0%
!!! AGTCATCCATTTTTGAAGTC+GGG - Chr4:33847043-33847062 None:intergenic 35.0%
!!! CACGGACATGGTTTTAAAAA+GGG - Chr4:33846738-33846757 None:intergenic 35.0%
!!! CAGTCATCCATTTTTGAAGT+CGG - Chr4:33847044-33847063 None:intergenic 35.0%
!!! GTAGTGTGCTTATTTTTGGA+TGG + Chr4:33847068-33847087 MsG0480020090.01.T01:CDS 35.0%
AAACCTAGACAAACTCGAAG+TGG + Chr4:33847515-33847534 MsG0480020090.01.T01:three_prime_UTR 40.0%
AAACTGGTTAGGTTTGGAAG+GGG + Chr4:33847304-33847323 MsG0480020090.01.T01:CDS 40.0%
AATCTAGACTGCTTCTGTAG+TGG + Chr4:33844918-33844937 MsG0480020090.01.T01:CDS 40.0%
AGGATAAACTGAACTCCACA+TGG + Chr4:33844838-33844857 MsG0480020090.01.T01:CDS 40.0%
AGTGAAAATCCTGCTAGGTA+AGG - Chr4:33844398-33844417 None:intergenic 40.0%
ATCTGTGACTGTAGTAAAGC+AGG + Chr4:33844947-33844966 MsG0480020090.01.T01:CDS 40.0%
ATTCAACTGGATTCCCAGAA+TGG - Chr4:33847157-33847176 None:intergenic 40.0%
ATTGAACATGTTAGATCCGC+GGG - Chr4:33847573-33847592 None:intergenic 40.0%
CAAAACTGGTTAGGTTTGGA+AGG + Chr4:33847302-33847321 MsG0480020090.01.T01:CDS 40.0%
CAAGTACCCGACTTCAAAAA+TGG + Chr4:33847034-33847053 MsG0480020090.01.T01:CDS 40.0%
CAAGTTTAGGTCTGTGTGAA+AGG + Chr4:33846160-33846179 MsG0480020090.01.T01:intron 40.0%
CAGGGTTCAAATCTCTTCAT+GGG + Chr4:33845050-33845069 MsG0480020090.01.T01:intron 40.0%
CAGTGAATGTTGGAAGCTTT+AGG - Chr4:33846873-33846892 None:intergenic 40.0%
CATCAGGTGAAGATCAAAAC+TGG + Chr4:33847288-33847307 MsG0480020090.01.T01:CDS 40.0%
CCATTAGTGAAAATCCTGCT+AGG - Chr4:33844403-33844422 None:intergenic 40.0%
CTACAGAAGCAGTCTAGATT+TGG - Chr4:33844918-33844937 None:intergenic 40.0%
CTGATATTTCAACACAACGC+TGG + Chr4:33845967-33845986 MsG0480020090.01.T01:intron 40.0%
CTTGAATCTGAGTGTTTACC+AGG - Chr4:33847428-33847447 None:intergenic 40.0%
GAAAGAATCAAGCAGTGCAA+GGG + Chr4:33845267-33845286 MsG0480020090.01.T01:CDS 40.0%
GAATGTATCCGTGGAATCTT+AGG + Chr4:33845858-33845877 MsG0480020090.01.T01:intron 40.0%
GATTTCTGCTTGAAGGAGTA+TGG + Chr4:33845384-33845403 MsG0480020090.01.T01:CDS 40.0%
GCCTAACATTAACCATATGC+TGG + Chr4:33845682-33845701 MsG0480020090.01.T01:intron 40.0%
GGTGAAGATCAAAACTGGTT+AGG + Chr4:33847293-33847312 MsG0480020090.01.T01:CDS 40.0%
GGTGGTTGAGATAGTATCAT+CGG + Chr4:33846950-33846969 MsG0480020090.01.T01:CDS 40.0%
GTCATTGAGTGACATTGTTG+GGG + Chr4:33846551-33846570 MsG0480020090.01.T01:intron 40.0%
GTTTGGAGATTTCTGCTTGA+AGG + Chr4:33845377-33845396 MsG0480020090.01.T01:CDS 40.0%
TATGAAAGCTTCTCTCCATG+TGG - Chr4:33844856-33844875 None:intergenic 40.0%
TATTGGCATAATGACCCACT+TGG - Chr4:33845170-33845189 None:intergenic 40.0%
TCATCAATTAGCATGGCAAG+AGG - Chr4:33846427-33846446 None:intergenic 40.0%
TCATTGTTCTTGCGTCAGAT+GGG + Chr4:33845460-33845479 MsG0480020090.01.T01:CDS 40.0%
TCGTGCATATTTACACAGCA+GGG + Chr4:33844436-33844455 MsG0480020090.01.T01:CDS 40.0%
TCTCCTATTCCCAACCAAAT+TGG - Chr4:33845243-33845262 None:intergenic 40.0%
TCTTGCCATGCTAATTGATG+AGG + Chr4:33846426-33846445 MsG0480020090.01.T01:intron 40.0%
TGCGTAACACTCTCAAGTTT+AGG + Chr4:33846147-33846166 MsG0480020090.01.T01:intron 40.0%
TGTCCATCATCTGATTCAAC+TGG - Chr4:33847170-33847189 None:intergenic 40.0%
TGTGGAGTTCAGTTTATCCT+CGG - Chr4:33844838-33844857 None:intergenic 40.0%
TTAAAAAGGGACAGAGACTG+TGG - Chr4:33846725-33846744 None:intergenic 40.0%
TTAACCATATGCTGGTAGGA+AGG + Chr4:33845690-33845709 MsG0480020090.01.T01:intron 40.0%
TTCACTAATGGAAAGAGTCG+GGG + Chr4:33844412-33844431 MsG0480020090.01.T01:CDS 40.0%
TTCATTGTTCTTGCGTCAGA+TGG + Chr4:33845459-33845478 MsG0480020090.01.T01:CDS 40.0%
TTCGTGCATATTTACACAGC+AGG + Chr4:33844435-33844454 MsG0480020090.01.T01:CDS 40.0%
TTCTGGTAAATTCAGCTGCT+CGG + Chr4:33847000-33847019 MsG0480020090.01.T01:CDS 40.0%
! AAACCACTTCGAGTTTGTCT+AGG - Chr4:33847521-33847540 None:intergenic 40.0%
! CCTAGCAGGATTTTCACTAA+TGG + Chr4:33844400-33844419 MsG0480020090.01.T01:CDS 40.0%
! CTCTGACGAGTATATGCTTT+TGG + Chr4:33845199-33845218 MsG0480020090.01.T01:intron 40.0%
! CTTTAGAAACATGCCTTTGC+TGG + Chr4:33845938-33845957 MsG0480020090.01.T01:intron 40.0%
! GTGAATGTTGGAAGCTTTAG+GGG - Chr4:33846871-33846890 None:intergenic 40.0%
! TGTGGTGTTAATTGTGGTTG+CGG + Chr4:33846667-33846686 MsG0480020090.01.T01:intron 40.0%
!! GGATGTTTTAAGCAATGAGG+AGG + Chr4:33846929-33846948 MsG0480020090.01.T01:CDS 40.0%
!! GGTAACATTTTGATGCTCCT+TGG + Chr4:33847472-33847491 MsG0480020090.01.T01:three_prime_UTR 40.0%
!! TCTAATATGGACTCGGTGAA+AGG + Chr4:33846261-33846280 MsG0480020090.01.T01:intron 40.0%
!! TGTTTTAAGCAATGAGGAGG+TGG + Chr4:33846932-33846951 MsG0480020090.01.T01:CDS 40.0%
AAACATGCCTTTGCTGGGTT+TGG + Chr4:33845944-33845963 MsG0480020090.01.T01:intron 45.0%
AAGATGAGCCTGAAGTTCCT+AGG + Chr4:33845307-33845326 MsG0480020090.01.T01:CDS 45.0%
AAGCGCATCCCTTCTATGAT+TGG - Chr4:33846024-33846043 None:intergenic 45.0%
AATCAAGCAGTGCAAGGGTA+GGG + Chr4:33845272-33845291 MsG0480020090.01.T01:CDS 45.0%
AATGACCCACTTGGCAAATC+AGG - Chr4:33845161-33845180 None:intergenic 45.0%
ACCATTCAGAGCAACCATTC+TGG + Chr4:33847140-33847159 MsG0480020090.01.T01:CDS 45.0%
ACTGGTGAATTAGGCTACCA+AGG - Chr4:33847492-33847511 None:intergenic 45.0%
ACTTACTTCCCACACAACCA+TGG - Chr4:33844485-33844504 None:intergenic 45.0%
AGACCATGGACAAAGAGCTT+AGG + Chr4:33844886-33844905 MsG0480020090.01.T01:CDS 45.0%
AGACCTAAGCTCTTTGTCCA+TGG - Chr4:33844892-33844911 None:intergenic 45.0%
AGATGAGCCTGAAGTTCCTA+GGG + Chr4:33845308-33845327 MsG0480020090.01.T01:CDS 45.0%
AGTCAACTGAATTGCCACCA+TGG - Chr4:33845126-33845145 None:intergenic 45.0%
AGTTTACGGTTTCAAACCCG+CGG + Chr4:33847554-33847573 MsG0480020090.01.T01:three_prime_UTR 45.0%
ATATCAGCCAAACCCAGCAA+AGG - Chr4:33845954-33845973 None:intergenic 45.0%
ATCATCAGCAGCAAGGATTC+TGG + Chr4:33846983-33847002 MsG0480020090.01.T01:CDS 45.0%
ATCTTGTTGCGCGTAAAGTG+AGG + Chr4:33844685-33844704 MsG0480020090.01.T01:CDS 45.0%
CAAAGACAGCAATGACTCCA+TGG + Chr4:33845106-33845125 MsG0480020090.01.T01:CDS 45.0%
CACACTGCCAATTGACAAAC+AGG - Chr4:33845793-33845812 None:intergenic 45.0%
CATGGAGTCATTGCTGTCTT+TGG - Chr4:33845108-33845127 None:intergenic 45.0%
CATTGTTCTTGCGTCAGATG+GGG + Chr4:33845461-33845480 MsG0480020090.01.T01:CDS 45.0%
CCAGGGTTCAAATCTCTTCA+TGG + Chr4:33845049-33845068 MsG0480020090.01.T01:intron 45.0%
CCATGAAGAGATTTGAACCC+TGG - Chr4:33845052-33845071 None:intergenic 45.0%
CCATTCAGAGCAACCATTCT+GGG + Chr4:33847141-33847160 MsG0480020090.01.T01:CDS 45.0%
CGGATACATTCAAGCACAAC+AGG - Chr4:33845849-33845868 None:intergenic 45.0%
GGAAAGAATCAAGCAGTGCA+AGG + Chr4:33845266-33845285 MsG0480020090.01.T01:CDS 45.0%
GGGAATTAATCAGGATGCCA+TGG + Chr4:33844465-33844484 MsG0480020090.01.T01:CDS 45.0%
GTACCATGCTATCGTTGATG+TGG - Chr4:33846499-33846518 None:intergenic 45.0%
GTTGAAGATGAAGCAGCATC+AGG + Chr4:33847272-33847291 MsG0480020090.01.T01:CDS 45.0%
GTTGTGCTTGAATGTATCCG+TGG + Chr4:33845849-33845868 MsG0480020090.01.T01:intron 45.0%
GTTTCCTTCCTACCAGCATA+TGG - Chr4:33845697-33845716 None:intergenic 45.0%
TAAATTCAGCTGCTCGGGAA+TGG + Chr4:33847006-33847025 MsG0480020090.01.T01:CDS 45.0%
TCCGAACTCCTAAGATTCCA+CGG - Chr4:33845869-33845888 None:intergenic 45.0%
TCCGTGGAATCTTAGGAGTT+CGG + Chr4:33845865-33845884 MsG0480020090.01.T01:intron 45.0%
TCTGGTAAATTCAGCTGCTC+GGG + Chr4:33847001-33847020 MsG0480020090.01.T01:CDS 45.0%
TCTGTGGACAAAAGAGAGCA+AGG + Chr4:33844329-33844348 MsG0480020090.01.T01:CDS 45.0%
TCTTGTTGCGCGTAAAGTGA+GGG + Chr4:33844686-33844705 MsG0480020090.01.T01:CDS 45.0%
TTGGTTGGGAATAGGAGAAG+CGG + Chr4:33845245-33845264 MsG0480020090.01.T01:intron 45.0%
! AATCGGAGCCATCTTTGAGA+AGG + Chr4:33847192-33847211 MsG0480020090.01.T01:CDS 45.0%
! AGTCGAAGTACTTGTAGCAG+CGG + Chr4:33844262-33844281 MsG0480020090.01.T01:CDS 45.0%
! TGAAGCCTGATTTGCCAAGT+GGG + Chr4:33845153-33845172 MsG0480020090.01.T01:intron 45.0%
! TGTGGTGTCTTTGATGGTCA+TGG + Chr4:33844651-33844670 MsG0480020090.01.T01:CDS 45.0%
! TTGAAGCCTGATTTGCCAAG+TGG + Chr4:33845152-33845171 MsG0480020090.01.T01:intron 45.0%
! TTTGATGGTCATGGTCCACA+AGG + Chr4:33844660-33844679 MsG0480020090.01.T01:CDS 45.0%
AACCCTGGTGCGTCATCAAA+AGG - Chr4:33845342-33845361 None:intergenic 50.0%
AGACAGCAATGACTCCATGG+TGG + Chr4:33845109-33845128 MsG0480020090.01.T01:CDS 50.0%
AGACTGTGGTGAGTCTGAGA+AGG + Chr4:33844803-33844822 MsG0480020090.01.T01:CDS 50.0%
AGCAGCCGGTGAGAAAATTC+AGG - Chr4:33845423-33845442 None:intergenic 50.0%
AGTAGAGACAGACACGGACA+TGG - Chr4:33846750-33846769 None:intergenic 50.0%
ATCAGGATGCCATGGTTGTG+TGG + Chr4:33844473-33844492 MsG0480020090.01.T01:CDS 50.0%
ATTTACACAGCAGGGTCGCA+AGG + Chr4:33844444-33844463 MsG0480020090.01.T01:CDS 50.0%
CAACACGATCATCAGCAGCA+AGG + Chr4:33846976-33846995 MsG0480020090.01.T01:CDS 50.0%
CGGAACATAACACCAGACTG+TGG + Chr4:33844789-33844808 MsG0480020090.01.T01:CDS 50.0%
CTGCCACATCAACGATAGCA+TGG + Chr4:33846493-33846512 MsG0480020090.01.T01:intron 50.0%
CTTGCTGCTGATGATCGTGT+TGG - Chr4:33846978-33846997 None:intergenic 50.0%
GAATCAAGCAGTGCAAGGGT+AGG + Chr4:33845271-33845290 MsG0480020090.01.T01:CDS 50.0%
GGGGATTCTCGAGCAATCAT+GGG + Chr4:33845080-33845099 MsG0480020090.01.T01:CDS 50.0%
GGGTCGCAAGGGAATTAATC+AGG + Chr4:33844456-33844475 MsG0480020090.01.T01:CDS 50.0%
TCAGGATGCCATGGTTGTGT+GGG + Chr4:33844474-33844493 MsG0480020090.01.T01:CDS 50.0%
TCCTGCAGTAGAGACAGACA+CGG - Chr4:33846756-33846775 None:intergenic 50.0%
TGAGAAGGATTGTTCTGCCG+AGG + Chr4:33844818-33844837 MsG0480020090.01.T01:CDS 50.0%
TGCTATCGTTGATGTGGCAG+AGG - Chr4:33846493-33846512 None:intergenic 50.0%
TGGGGATTCTCGAGCAATCA+TGG + Chr4:33845079-33845098 MsG0480020090.01.T01:CDS 50.0%
TTCTCAGACTCACCACAGTC+TGG - Chr4:33844804-33844823 None:intergenic 50.0%
TTTACACAGCAGGGTCGCAA+GGG + Chr4:33844445-33844464 MsG0480020090.01.T01:CDS 50.0%
! ACCAGGGTTAGCAATGGCTA+GGG + Chr4:33845353-33845372 MsG0480020090.01.T01:CDS 50.0%
! CCCAGAATGGTTGCTCTGAA+TGG - Chr4:33847144-33847163 None:intergenic 50.0%
! GTCGAAGTACTTGTAGCAGC+GGG + Chr4:33844263-33844282 MsG0480020090.01.T01:CDS 50.0%
! TTAGCAATGGCTAGGGCGTT+TGG + Chr4:33845360-33845379 MsG0480020090.01.T01:CDS 50.0%
!!! TGCCTTTTGATGACGCACCA+GGG + Chr4:33845337-33845356 MsG0480020090.01.T01:CDS 50.0%
AAGGGACAGAGACTGTGGTC+AGG - Chr4:33846720-33846739 None:intergenic 55.0%
ACTTGTAGCAGCGGGAGCAA+TGG + Chr4:33844271-33844290 MsG0480020090.01.T01:CDS 55.0%
AGCCACACCCTAGGAACTTC+AGG - Chr4:33845318-33845337 None:intergenic 55.0%
AGCCTGAAGTTCCTAGGGTG+TGG + Chr4:33845313-33845332 MsG0480020090.01.T01:CDS 55.0%
AGGGACAGAGACTGTGGTCA+GGG - Chr4:33846719-33846738 None:intergenic 55.0%
ATCGACAGACACTGCTCCGT+TGG - Chr4:33847252-33847271 None:intergenic 55.0%
CGCGCAACAAGATGACCTTG+TGG - Chr4:33844678-33844697 None:intergenic 55.0%
GATCTCTGTCTGTGAGCAGC+CGG - Chr4:33845437-33845456 None:intergenic 55.0%
TCAAAAGGCAGCCACACCCT+AGG - Chr4:33845327-33845346 None:intergenic 55.0%
TCCGTGTCTGTCTCTACTGC+AGG + Chr4:33846752-33846771 MsG0480020090.01.T01:intron 55.0%
TGGTCAGGGTAGCTACATCG+AGG - Chr4:33846705-33846724 None:intergenic 55.0%
! CACCAGGGTTAGCAATGGCT+AGG + Chr4:33845352-33845371 MsG0480020090.01.T01:CDS 55.0%
! TGACGCACCAGGGTTAGCAA+TGG + Chr4:33845347-33845366 MsG0480020090.01.T01:CDS 55.0%
!!! CTGCCTTTTGATGACGCACC+AGG + Chr4:33845336-33845355 MsG0480020090.01.T01:CDS 55.0%
GCCCTAGCCATTGCTAACCC+TGG - Chr4:33845357-33845376 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr4 gene 33844238 33847616 33844238 ID=MsG0480020090.01;Name=MsG0480020090.01
Chr4 mRNA 33844238 33847616 33844238 ID=MsG0480020090.01.T01;Parent=MsG0480020090.01;Name=MsG0480020090.01.T01;_AED=0.49;_eAED=0.49;_QI=0|0.75|0.8|1|1|1|5|228|479
Chr4 exon 33846924 33847616 33846924 ID=MsG0480020090.01.T01:exon:55256;Parent=MsG0480020090.01.T01
Chr4 exon 33845259 33845482 33845259 ID=MsG0480020090.01.T01:exon:55255;Parent=MsG0480020090.01.T01
Chr4 exon 33845053 33845170 33845053 ID=MsG0480020090.01.T01:exon:55254;Parent=MsG0480020090.01.T01
Chr4 exon 33844624 33844968 33844624 ID=MsG0480020090.01.T01:exon:55253;Parent=MsG0480020090.01.T01
Chr4 exon 33844238 33844525 33844238 ID=MsG0480020090.01.T01:exon:55252;Parent=MsG0480020090.01.T01
Chr4 CDS 33844238 33844525 33844238 ID=MsG0480020090.01.T01:cds;Parent=MsG0480020090.01.T01
Chr4 CDS 33844624 33844968 33844624 ID=MsG0480020090.01.T01:cds;Parent=MsG0480020090.01.T01
Chr4 CDS 33845053 33845170 33845053 ID=MsG0480020090.01.T01:cds;Parent=MsG0480020090.01.T01
Chr4 CDS 33845259 33845482 33845259 ID=MsG0480020090.01.T01:cds;Parent=MsG0480020090.01.T01
Chr4 CDS 33846924 33847388 33846924 ID=MsG0480020090.01.T01:cds;Parent=MsG0480020090.01.T01
Chr4 three_prime_UTR 33847389 33847616 33847389 ID=MsG0480020090.01.T01:three_prime_utr;Parent=MsG0480020090.01.T01
Gene Sequence

>MsG0480020090.01.T01

ATGGGTTGTTGTGTCTCAACGAGCAGTCGAAGTACTTGTAGCAGCGGGAGCAATGGAGAGATGATAACTCCATCTTGCTTCGAAATTTGTTTCTGTGGACAAAAGAGAGCAAGGAGAACATTTTCTGATCATGCTATTTCTCTACACCAATTATCATCCTTACCTAGCAGGATTTTCACTAATGGAAAGAGTCGGGGTTCGTGCATATTTACACAGCAGGGTCGCAAGGGAATTAATCAGGATGCCATGGTTGTGTGGGAAGTAAGTATGTTCATGTTCACTTTATTGGATTTCATGTCCGAAGATACGATATTTTGTGGTGTCTTTGATGGTCATGGTCCACAAGGTCATCTTGTTGCGCGTAAAGTGAGGGATACATTGCCAGTAAAATTGCTTTCATTTTGGCATTCTCTTGAATCGAAACAAAATAGGTCAGACAAAACTTGCTTCAAACGGAACATAACACCAGACTGTGGTGAGTCTGAGAAGGATTGTTCTGCCGAGGATAAACTGAACTCCACATGGAGAGAAGCTTTCATAAAAGCATACAAGACCATGGACAAAGAGCTTAGGTCTTATCCAAATCTAGACTGCTTCTGTAGTGGAAGCACATCTGTGACTGTAGTAAAGCAGGGTTCAAATCTCTTCATGGGATATATTGGGGATTCTCGAGCAATCATGGGATCCAAAGACAGCAATGACTCCATGGTGGCAATTCAGTTGACTGTTGATTTGAAGCCTGATTTGCCAAGAGAAGCGGAAAGAATCAAGCAGTGCAAGGGTAGGGTTTTTGCTTTGCAAGATGAGCCTGAAGTTCCTAGGGTGTGGCTGCCTTTTGATGACGCACCAGGGTTAGCAATGGCTAGGGCGTTTGGAGATTTCTGCTTGAAGGAGTATGGTGTGATTTCTATACCTGAATTTTCTCACCGGCTGCTCACAGACAGAGATCAATTCATTGTTCTTGCGTCAGATGGGGTTTGGGATGTTTTAAGCAATGAGGAGGTGGTTGAGATAGTATCATCGGCACCAACACGATCATCAGCAGCAAGGATTCTGGTAAATTCAGCTGCTCGGGAATGGAAACTCAAGTACCCGACTTCAAAAATGGATGACTGTGCTGTAGTGTGCTTATTTTTGGATGGTAAAATGGACTCAGAATCAGATTATGATGAACAGGGCTTCTCTTCTGCAACCATTCAGAGCAACCATTCTGGGAATCCAGTTGAATCAGATGATGGACAAAAATCGGAGCCATCTTTGAGAAGGAACTTTACTGTGAGATCATCAGAAGAAAATGAGACCAACGGAGCAGTGTCTGTCGATGTTGAAGATGAAGCAGCATCAGGTGAAGATCAAAACTGGTTAGGTTTGGAAGGGGTCACTCGTGTAAACTCACTCGTCCAACTTCCTAGATTTTCTGAAGAAAGATCAAACTCTTGA

Protein sequence

>MsG0480020090.01.T01

MGCCVSTSSRSTCSSGSNGEMITPSCFEICFCGQKRARRTFSDHAISLHQLSSLPSRIFTNGKSRGSCIFTQQGRKGINQDAMVVWEVSMFMFTLLDFMSEDTIFCGVFDGHGPQGHLVARKVRDTLPVKLLSFWHSLESKQNRSDKTCFKRNITPDCGESEKDCSAEDKLNSTWREAFIKAYKTMDKELRSYPNLDCFCSGSTSVTVVKQGSNLFMGYIGDSRAIMGSKDSNDSMVAIQLTVDLKPDLPREAERIKQCKGRVFALQDEPEVPRVWLPFDDAPGLAMARAFGDFCLKEYGVISIPEFSHRLLTDRDQFIVLASDGVWDVLSNEEVVEIVSSAPTRSSAARILVNSAAREWKLKYPTSKMDDCAVVCLFLDGKMDSESDYDEQGFSSATIQSNHSGNPVESDDGQKSEPSLRRNFTVRSSEENETNGAVSVDVEDEAASGEDQNWLGLEGVTRVNSLVQLPRFSEERSNS*