AlfalfaGEDB | MsG0180005704.01

M. sativa cultivar ZhongmuNo.1 / MsG0180005704.01

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180005704.01.T01	KEH43970.1	92.683	41	3	0	1	41	158	198	7.19E-17	83.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180005704.01.T01	A0A072W108	92.683	41	3	0	1	41	158	198	3.43e-17	83.2

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0180005146.01	MsG0180005704.01	0.804856	1.767182e-49	9.211018e-47
MsG0180005704.01	MsG0380017200.01	0.820130	8.068891e-53	6.330931e-50
MsG0180005704.01	MsG0380017307.01	0.817491	3.208001e-52	2.339701e-49
MsG0180005704.01	MsG0780041447.01	0.806791	6.928828e-50	3.794952e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180005704.01.T01	MTR_1g105860	92.683	41	3	1	41	158	198	8.71e-21	83.2
MsG0180005704.01.T01	MTR_1g105860	92.683	41	3	1	41	175	215	2.20e-20	82.4
MsG0180005704.01.T01	MTR_1g105885	75.610	41	10	1	41	155	195	3.38e-17	73.6
MsG0180005704.01.T01	MTR_1g105855	82.927	41	7	1	41	175	215	4.77e-17	73.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 17 sgRNAs with CRISPR-Local

Find 15 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGCAAACAATCATCACACT+GGG	0.585932	1:-95200662	None:intergenic
AGATGTTGTAGCAATAGGAT+TGG	0.527777	1:+95200706	MsG0180005704.01.T01:CDS
AGCAAACAATCATCACACTG+GGG	0.800516	1:-95200661	None:intergenic
ATATATATTTGATTACTACT+AGG	0.471336	1:-95200605	None:intergenic
CACTGGGGACCAGACAAGTC+AGG	0.531473	1:-95200646	None:intergenic
CAGTGTACACCTGACTTGTC+TGG	0.440744	1:+95200637	MsG0180005704.01.T01:CDS
GAAGCAAACAATCATCACAC+TGG	0.591047	1:-95200663	None:intergenic
GGCAGATCAATTTAATATCT+TGG	0.285791	1:+95200499	MsG0180005704.01.T01:CDS
GTATGTTGTAGGAACAATGA+CGG	0.611472	1:+95200580	MsG0180005704.01.T01:CDS
GTTGAATGATTTAAGAAGCA+AGG	0.524724	1:+95200532	MsG0180005704.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GGCAGATCAATTTAATATCT+TGG	+	Chr1:95200499-95200518	MsG0180005704.01.T01:CDS	30.0%
GTTGAATGATTTAAGAAGCA+AGG	+	Chr1:95200532-95200551	MsG0180005704.01.T01:CDS	30.0%
TTAAGAAGCAAGGCTATAAA+TGG	+	Chr1:95200542-95200561	MsG0180005704.01.T01:CDS	30.0%
TTTCAAGATGTTGTAGCAAT+AGG	+	Chr1:95200701-95200720	MsG0180005704.01.T01:CDS	30.0%
AAGCAAACAATCATCACACT+GGG	-	Chr1:95200665-95200684	None:intergenic	35.0%
AGATGTTGTAGCAATAGGAT+TGG	+	Chr1:95200706-95200725	MsG0180005704.01.T01:CDS	35.0%
GTATGTTGTAGGAACAATGA+CGG	+	Chr1:95200580-95200599	MsG0180005704.01.T01:CDS	35.0%
TATGTTGTAGGAACAATGAC+GGG	+	Chr1:95200581-95200600	MsG0180005704.01.T01:CDS	35.0%
TCACATCGTAAGTATGTTGT+AGG	+	Chr1:95200569-95200588	MsG0180005704.01.T01:CDS	35.0%
AGCAAACAATCATCACACTG+GGG	-	Chr1:95200664-95200683	None:intergenic	40.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	95200497	95200760	95200497	ID=MsG0180005704.01;Name=MsG0180005704.01
Chr1	mRNA	95200497	95200760	95200497	ID=MsG0180005704.01.T01;Parent=MsG0180005704.01;Name=MsG0180005704.01.T01;_AED=0.43;_eAED=0.43;_QI=0\|-1\|0\|1\|-1\|0\|1\|0\|87
Chr1	exon	95200497	95200760	95200497	ID=MsG0180005704.01.T01:exon:10398;Parent=MsG0180005704.01.T01
Chr1	CDS	95200497	95200760	95200497	ID=MsG0180005704.01.T01:cds;Parent=MsG0180005704.01.T01

Gene Sequence	>MsG0180005704.01.T01 ATGGCAGATCAATTTAATATCTTGGTAAAACAACTGTTGAATGATTTAAGAAGCAAGGCTATAAATGGTGATTCACATCGTAAGTATGTTGTAGGAACAATGACGGGTCCTAGTAGTAATCAAATATATATGGTCTTGTTCAGTGTACACCTGACTTGTCTGGTCCCCAGTGTGATGATTGTTTGCTTCAATCTATTGCTGAAGTTTCAAGATGTTGTAGCAATAGGATTGGTGCTAGAATTGTTAGACCAAGCTGTAATTTGA
Protein sequence	>MsG0180005704.01.T01 MADQFNILVKQLLNDLRSKAINGDSHRKYVVGTMTGPSSNQIYMVLFSVHLTCLVPSVMIVCFNLLLKFQDVVAIGLVLELLDQAVI*