AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780041447.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780041447.01.T01 MTR_7g111240 85.981 214 6 1 1 190 1 214 1.45e-127 357
MsG0780041447.01.T01 MTR_7g111240 84.579 214 6 2 1 190 1 211 9.37e-116 327
MsG0780041447.01.T01 MTR_1g085140 67.337 199 41 1 16 190 20 218 6.16e-92 268
MsG0780041447.01.T01 MTR_1g085500 56.039 207 67 1 8 190 11 217 1.10e-74 224
MsG0780041447.01.T01 MTR_1g079490 40.278 216 99 3 1 187 3 217 8.92e-42 140
MsG0780041447.01.T01 MTR_4g017040 39.535 215 99 3 1 186 3 215 2.04e-41 139
MsG0780041447.01.T01 MTR_6g005360 41.509 212 94 3 4 187 6 215 2.60e-41 139
MsG0780041447.01.T01 MTR_6g005310 41.509 212 94 3 4 187 6 215 4.37e-41 138
MsG0780041447.01.T01 MTR_6g005330 41.121 214 96 3 2 187 4 215 6.38e-41 138
MsG0780041447.01.T01 MTR_4g017050 39.535 215 99 3 1 186 3 215 9.07e-41 137
MsG0780041447.01.T01 MTR_5g046410 39.535 215 99 3 1 186 3 215 9.67e-41 137
MsG0780041447.01.T01 MTR_5g046430 39.535 215 99 3 1 186 3 215 9.67e-41 137
MsG0780041447.01.T01 MTR_4g017030 39.535 215 99 3 1 186 3 215 9.67e-41 137
MsG0780041447.01.T01 MTR_2g019250 39.535 215 99 3 1 186 3 215 2.04e-40 137
MsG0780041447.01.T01 MTR_6g005340 41.038 212 95 3 4 187 6 215 2.80e-40 136
MsG0780041447.01.T01 MTR_5g036570 39.487 195 93 2 19 188 26 220 1.31e-39 134
MsG0780041447.01.T01 MTR_1g112200 38.095 210 93 6 9 189 8 209 4.73e-38 130
MsG0780041447.01.T01 MTR_6g005380 43.646 181 71 3 24 175 26 204 2.94e-37 128
MsG0780041447.01.T01 MTR_1g023770 35.849 212 104 2 2 187 4 209 2.86e-35 123
MsG0780041447.01.T01 MTR_6g005350 37.198 207 99 4 9 187 11 214 3.89e-32 115
MsG0780041447.01.T01 MTR_2g030855 36.410 195 95 2 19 187 21 212 6.91e-32 114
MsG0780041447.01.T01 MTR_2g031270 35.789 190 93 2 24 187 27 213 3.83e-30 110
MsG0780041447.01.T01 MTR_1g060120 33.486 218 111 5 4 190 10 224 2.25e-29 108
MsG0780041447.01.T01 MTR_8g020630 32.547 212 116 4 2 190 1 208 2.95e-28 105
MsG0780041447.01.T01 MTR_2g030895 35.465 172 84 1 43 187 7 178 3.31e-28 104
MsG0780041447.01.T01 MTR_2g030865 35.465 172 84 1 43 187 7 178 2.55e-27 102
MsG0780041447.01.T01 MTR_2g045100 33.810 210 112 5 2 188 1 206 2.67e-27 102
MsG0780041447.01.T01 MTR_8g020650 32.984 191 102 3 23 190 21 208 4.85e-27 102
MsG0780041447.01.T01 MTR_8g007300 39.053 169 76 3 19 161 25 192 5.17e-27 102
MsG0780041447.01.T01 MTR_8g020670 31.604 212 118 4 2 190 1 208 2.94e-26 100
MsG0780041447.01.T01 MTR_0284s0010 31.905 210 116 4 2 188 1 206 1.58e-25 98.2
MsG0780041447.01.T01 MTR_3g019710 31.905 210 116 5 2 188 1 206 5.05e-25 97.1
MsG0780041447.01.T01 MTR_2g044040 31.905 210 116 5 2 188 1 206 1.29e-24 95.9
MsG0780041447.01.T01 MTR_5g031460 29.048 210 122 4 2 188 1 206 2.44e-24 95.1
MsG0780041447.01.T01 MTR_2g031300 38.849 139 79 1 43 175 7 145 3.23e-24 93.6
MsG0780041447.01.T01 MTR_3g096330 34.872 195 84 5 19 187 576 753 3.77e-24 99.4
MsG0780041447.01.T01 MTR_8g020590 32.020 203 112 2 9 187 4 204 4.96e-24 94.4
MsG0780041447.01.T01 MTR_2g036120 32.381 210 115 5 2 188 1 206 6.08e-24 94.0
MsG0780041447.01.T01 MTR_3g019650 30.952 210 117 5 2 188 1 205 8.26e-24 93.6
MsG0780041447.01.T01 MTR_7g011340 32.447 188 101 3 24 188 22 206 1.74e-23 92.8
MsG0780041447.01.T01 MTR_3g019680 31.905 210 115 6 2 188 1 205 1.23e-22 90.9
MsG0780041447.01.T01 MTR_2g041570 34.759 187 96 2 26 188 23 207 2.12e-22 90.1
MsG0780041447.01.T01 MTR_8g020770 39.683 126 75 1 2 126 1 126 2.16e-22 90.1
MsG0780041447.01.T01 MTR_2g041580 45.545 101 55 0 26 126 23 123 6.22e-22 89.0
MsG0780041447.01.T01 MTR_2g041550 35.484 186 94 3 26 187 23 206 6.22e-22 89.0
MsG0780041447.01.T01 MTR_4g010340 33.005 203 106 5 8 187 6 201 1.75e-21 87.4
MsG0780041447.01.T01 MTR_2g072560 44.144 111 61 1 8 118 6 115 2.37e-21 85.5
MsG0780041447.01.T01 MTR_4g027415 43.689 103 57 1 24 126 22 123 2.40e-21 85.5
MsG0780041447.01.T01 MTR_8g020750 34.911 169 86 2 2 146 1 169 1.46e-20 85.5
MsG0780041447.01.T01 MTR_3g019610 42.991 107 59 2 2 108 1 105 2.23e-20 82.0
MsG0780041447.01.T01 MTR_8g020610 30.682 176 95 3 8 159 5 177 1.27e-17 77.4
MsG0780041447.01.T01 MTR_8g020760 36.508 126 79 1 1 126 1 125 4.62e-17 76.3
MsG0780041447.01.T01 MTR_4g052770 33.582 134 62 3 76 184 71 202 4.98e-17 75.9
MsG0780041447.01.T01 MTR_4g052780 33.582 134 62 3 76 184 71 202 7.79e-17 75.5
MsG0780041447.01.T01 MTR_2g086630 35.075 134 60 3 76 184 70 201 9.52e-17 75.1
MsG0780041447.01.T01 MTR_2g086620 35.075 134 60 3 76 184 70 201 1.02e-16 75.1
MsG0780041447.01.T01 MTR_2g086640 30.622 209 104 7 1 184 8 200 5.09e-16 73.2
MsG0780041447.01.T01 MTR_8g020763 41.573 89 50 2 39 126 17 104 6.54e-14 67.4
MsG0780041447.01.T01 MTR_3g073170 28.877 187 103 5 25 187 26 206 1.13e-13 67.0
MsG0780041447.01.T01 MTR_2g019780 25.472 212 127 6 1 187 3 208 9.20e-13 64.7
MsG0780041447.01.T01 MTR_3g019810 32.178 202 112 10 2 184 107 302 2.71e-12 64.3
MsG0780041447.01.T01 MTR_2g030915 48.214 56 17 1 91 134 1 56 2.63e-11 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780041447.01.T01 AT1G09560 63.819 199 48 1 16 190 20 218 3.30e-81 240
MsG0780041447.01.T01 AT3G62020 57.075 212 63 3 7 190 7 218 7.76e-78 232
MsG0780041447.01.T01 AT1G02335 53.623 207 71 2 9 190 12 218 7.88e-72 217
MsG0780041447.01.T01 AT3G62020 58.564 181 50 2 35 190 9 189 4.48e-68 206
MsG0780041447.01.T01 AT5G26700 50.000 196 71 2 19 190 20 212 1.03e-60 188
MsG0780041447.01.T01 AT3G05930 45.894 207 87 2 9 190 12 218 2.27e-57 180
MsG0780041447.01.T01 AT5G39110 42.273 220 93 3 2 187 1 220 1.05e-47 155
MsG0780041447.01.T01 AT5G39150 42.922 219 92 3 2 187 1 219 1.26e-47 155
MsG0780041447.01.T01 AT1G18970 42.927 205 91 2 8 188 17 219 2.30e-47 154
MsG0780041447.01.T01 AT5G39120 42.466 219 93 3 2 187 1 219 6.09e-47 153
MsG0780041447.01.T01 AT5G39180 42.466 219 93 3 2 187 1 219 8.90e-47 153
MsG0780041447.01.T01 AT5G39160 41.627 209 94 2 8 188 12 220 3.05e-46 152
MsG0780041447.01.T01 AT3G05950 44.186 215 90 3 4 188 8 222 3.45e-46 152
MsG0780041447.01.T01 AT5G39190 41.627 209 94 2 8 188 12 220 4.71e-46 151
MsG0780041447.01.T01 AT5G39130 41.627 209 94 2 8 188 12 220 8.27e-46 150
MsG0780041447.01.T01 AT1G18980 42.640 197 87 2 16 188 25 219 5.56e-45 148
MsG0780041447.01.T01 AT3G04200 41.964 224 95 4 1 189 1 224 1.63e-44 147
MsG0780041447.01.T01 AT4G14630 41.935 217 95 3 2 187 6 222 5.24e-44 146
MsG0780041447.01.T01 AT5G39160 40.952 210 90 3 8 188 12 216 5.07e-43 143
MsG0780041447.01.T01 AT5G38960 41.463 205 91 3 13 188 19 223 2.19e-41 139
MsG0780041447.01.T01 AT5G38910 42.308 182 92 2 8 187 12 182 1.58e-39 133
MsG0780041447.01.T01 AT5G38910 39.352 216 101 3 2 187 4 219 2.93e-39 134
MsG0780041447.01.T01 AT5G38930 40.500 200 91 2 16 187 22 221 1.70e-37 129
MsG0780041447.01.T01 AT5G38940 40.609 197 89 2 19 187 25 221 3.58e-37 128
MsG0780041447.01.T01 AT3G04170 37.788 217 102 4 4 190 8 221 4.83e-37 128
MsG0780041447.01.T01 AT5G38940 40.609 197 89 2 19 187 49 245 5.01e-37 129
MsG0780041447.01.T01 AT5G39160 37.619 210 79 3 8 188 12 198 1.16e-36 126
MsG0780041447.01.T01 AT5G39190 37.619 210 79 3 8 188 12 198 1.36e-36 126
MsG0780041447.01.T01 AT3G04150 37.674 215 101 4 4 185 8 222 9.60e-36 125
MsG0780041447.01.T01 AT3G04150 35.526 228 101 4 4 185 8 235 6.59e-35 123
MsG0780041447.01.T01 AT3G04190 37.563 197 95 2 20 188 26 222 9.40e-34 120
MsG0780041447.01.T01 AT3G04180 37.113 194 94 2 20 185 26 219 3.96e-33 118
MsG0780041447.01.T01 AT1G10460 35.000 200 101 4 17 187 16 215 1.92e-31 114
MsG0780041447.01.T01 AT5G61750 34.831 178 90 3 2 153 1 178 2.04e-28 105
MsG0780041447.01.T01 AT3G10080 33.498 203 103 6 16 189 22 221 4.47e-27 102
MsG0780041447.01.T01 AT3G10080 33.498 203 103 6 16 189 93 292 1.62e-26 102
MsG0780041447.01.T01 AT1G74820 32.447 188 101 2 24 187 40 225 4.68e-26 100
MsG0780041447.01.T01 AT5G20630 32.227 211 116 3 2 188 1 208 7.00e-25 96.7
MsG0780041447.01.T01 AT1G72610 33.684 190 100 2 23 188 18 205 2.00e-23 92.8

Find 65 sgRNAs with CRISPR-Local

Find 98 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAACTTCCTTGGTACCAATT+TGG 0.208001 7:+90995850 None:intergenic
CCTCGCAGGGTTGTTGCTTC+TGG 0.229387 7:-90997046 MsG0780041447.01.T01:CDS
GTACATAACCACTGTTCTTT+TGG 0.233211 7:+90995985 None:intergenic
TTGTCTTGCCTACATATAAT+TGG 0.267421 7:-90997125 MsG0780041447.01.T01:five_prime_UTR
TTGACTCAAGCATTCCAAAT+TGG 0.317621 7:-90995864 MsG0780041447.01.T01:CDS
GCTTGAGTCAAAATATTATC+TGG 0.334327 7:+90995876 None:intergenic
TGTGTTGCAGACCTTGCTTC+TGG 0.354120 7:-90996976 MsG0780041447.01.T01:intron
CTCTCTTCCAAGTCTTCTCT+TGG 0.370804 7:-90997226 MsG0780041447.01.T01:five_prime_UTR
CAATCCTTGATCTCACTACT+TGG 0.371152 7:+90995803 None:intergenic
GTTGTTTGTGGCTCCTGGTT+TGG 0.387912 7:+90996261 None:intergenic
GTACCTGCTGCAGTAATTGC+AGG 0.389830 7:-90995966 MsG0780041447.01.T01:CDS
CAACACACTTGGTGTGTCAT+TGG 0.413477 7:-90996188 MsG0780041447.01.T01:CDS
TTAACAGCGATTCTAGTGAA+TGG 0.422863 7:-90996343 MsG0780041447.01.T01:intron
TTGAAGGTCAATTAGATGTT+GGG 0.424187 7:-90996090 MsG0780041447.01.T01:intron
AATGTGTTGTTTGTGGCTCC+TGG 0.432005 7:+90996256 None:intergenic
CACCAAGTGTGTTGAGTCCT+GGG 0.432787 7:+90996197 None:intergenic
GTCAAAATATTATCTGGAAC+AGG 0.434168 7:+90995882 None:intergenic
GAGATTGTGTTTGTTCTTGA+AGG 0.435097 7:-90996106 MsG0780041447.01.T01:CDS
GGAGCCACAAACAACACATT+TGG 0.436644 7:-90996253 MsG0780041447.01.T01:CDS
CTTGAAGGTCAATTAGATGT+TGG 0.439258 7:-90996091 MsG0780041447.01.T01:CDS
TTTGAAAACCAATTATATGT+AGG 0.446939 7:+90997117 None:intergenic
AACATTGGCTAAGGTTACTA+AGG 0.477034 7:+90996228 None:intergenic
ACAGAGGTCTTGAAGATTGT+CGG 0.481708 7:+90996996 None:intergenic
CAGAGGTCTTGAAGATTGTC+GGG 0.482659 7:+90996997 None:intergenic
GTAGAAGCAAACAAAGTAAG+AGG 0.485526 7:+90995909 None:intergenic
TGGTTTGGCTAGTACGTTGG+TGG 0.495482 7:+90996276 None:intergenic
GAGTTGGAATGAAGTGGTAA+TGG 0.496464 7:+90997187 None:intergenic
TCGGTGACAAACAAATTAAC+CGG 0.501973 7:+90997089 None:intergenic
GAGCAATATGAATTATGAGT+TGG 0.502930 7:+90997171 None:intergenic
TCCTGGTTTGGCTAGTACGT+TGG 0.504209 7:+90996273 None:intergenic
GCTTCATCATTTGTTATGAT+CGG 0.509664 7:+90997070 None:intergenic
AGTTGGAATGAAGTGGTAAT+GGG 0.516652 7:+90997188 None:intergenic
GAAATCAGCTGCGGTTACAT+TGG 0.516657 7:+90996300 None:intergenic
AATCCTGCAATTACTGCAGC+AGG 0.520151 7:+90995963 None:intergenic
GCTGCGGTTACATTGGAAGC+TGG 0.520487 7:+90996307 None:intergenic
ACACCAAGTGTGTTGAGTCC+TGG 0.524633 7:+90996196 None:intergenic
GGAACCAAATGTGTTGTTTG+TGG 0.527740 7:+90996249 None:intergenic
TGGAAGAGAGACAGAAGACT+TGG 0.528749 7:+90997239 None:intergenic
CAAATGATGAAGCTCCTCGC+AGG 0.535137 7:-90997060 MsG0780041447.01.T01:CDS
ATTTATACCAAGAGAAGACT+TGG 0.545538 7:+90997219 None:intergenic
GCCAATGTTCAGAAAATCCC+AGG 0.563692 7:-90996214 MsG0780041447.01.T01:CDS
ATCCCAGGACTCAACACACT+TGG 0.570656 7:-90996199 MsG0780041447.01.T01:CDS
CACGTGGGTGAGTGTGAGGT+GGG 0.576033 7:+90996134 None:intergenic
AAGTTCAGAAAATCAAGTCT+AGG 0.576600 7:-90995833 MsG0780041447.01.T01:CDS
GCACGTGGGTGAGTGTGAGG+TGG 0.584372 7:+90996133 None:intergenic
AAATGATGAAGCTCCTCGCA+GGG 0.586522 7:-90997059 MsG0780041447.01.T01:CDS
AGCATTCCAAATTGGTACCA+AGG 0.587841 7:-90995856 MsG0780041447.01.T01:CDS
AATCCTTGATCTCACTACTT+GGG 0.605443 7:+90995804 None:intergenic
CAATAGTCAATTGCAAGGAA+CGG 0.606871 7:-90995940 MsG0780041447.01.T01:CDS
AACACAATCTCAGTTGCACG+TGG 0.610170 7:+90996118 None:intergenic
ACCAACGTACTAGCCAAACC+AGG 0.618402 7:-90996274 MsG0780041447.01.T01:CDS
CGTATTGACTATGCTGTAGG+TGG 0.621828 7:-90996163 MsG0780041447.01.T01:CDS
GTTCATTTCCAAAAGAACAG+TGG 0.623665 7:-90995993 MsG0780041447.01.T01:CDS
AAAATATTATCTGGAACAGG+TGG 0.624953 7:+90995885 None:intergenic
ATGTAACGGTACCAGAAGCA+AGG 0.638804 7:+90996965 None:intergenic
GGATTCAATAGTCAATTGCA+AGG 0.643876 7:-90995945 MsG0780041447.01.T01:CDS
AATTATGAGTTGGAATGAAG+TGG 0.654204 7:+90997181 None:intergenic
GCACGTATTGACTATGCTGT+AGG 0.654744 7:-90996166 MsG0780041447.01.T01:CDS
GTTGCACGTGGGTGAGTGTG+AGG 0.660628 7:+90996130 None:intergenic
GTCGGGATCAGCAGTGACAG+AGG 0.662254 7:+90997014 None:intergenic
CCAGAAGCAACAACCCTGCG+AGG 0.671018 7:+90997046 None:intergenic
GGGATCAGCAGTGACAGAGG+TGG 0.687303 7:+90997017 None:intergenic
GTTGGTGGAGAAATCAGCTG+CGG 0.730459 7:+90996291 None:intergenic
ACACAATCTCAGTTGCACGT+GGG 0.741428 7:+90996119 None:intergenic
AAGCAAGGTCTGCAACACAG+AGG 0.751663 7:+90996980 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAATATAAGAAAG+AGG + Chr7:90996317-90996336 None:intergenic 10.0%
!! TATGATATTATAAAAGATAA+GGG + Chr7:90996477-90996496 None:intergenic 10.0%
!! AAAGTTAATCATATTCATAT+AGG + Chr7:90996443-90996462 None:intergenic 15.0%
!! ATAAACAAGCTATATAAAAA+AGG + Chr7:90995929-90995948 None:intergenic 15.0%
!! GTATGATATTATAAAAGATA+AGG + Chr7:90996478-90996497 None:intergenic 15.0%
!! ATATCAAAGACTATTGTTAA+GGG - Chr7:90997032-90997051 MsG0780041447.01.T01:CDS 20.0%
!! TTAATCATATTCATATAGGT+GGG + Chr7:90996439-90996458 None:intergenic 20.0%
!! TTTGAAAACCAATTATATGT+AGG + Chr7:90995961-90995980 None:intergenic 20.0%
! AGGATTGCATATAATGATTA+AGG + Chr7:90996297-90996316 None:intergenic 25.0%
! CAATTATAGTATCTTTCTGA+AGG - Chr7:90996501-90996520 MsG0780041447.01.T01:intron 25.0%
! CTTCAGAAAGATACTATAAT+TGG + Chr7:90996503-90996522 None:intergenic 25.0%
! GATATCAAAGACTATTGTTA+AGG - Chr7:90997031-90997050 MsG0780041447.01.T01:CDS 25.0%
! GGAAAAAGTGAAAATGAAAA+GGG + Chr7:90996275-90996294 None:intergenic 25.0%
! GGATTGCATATAATGATTAA+GGG + Chr7:90996296-90996315 None:intergenic 25.0%
! GTACTTAGCAACATTAATTA+TGG - Chr7:90996224-90996243 MsG0780041447.01.T01:CDS 25.0%
! GTTAATCATATTCATATAGG+TGG + Chr7:90996440-90996459 None:intergenic 25.0%
! TCAATAAAAAGCCATATCAA+AGG + Chr7:90996386-90996405 None:intergenic 25.0%
! TTATGGTTGAATTATTGTGA+TGG - Chr7:90996681-90996700 MsG0780041447.01.T01:intron 25.0%
! TTCTTGTCTTACAATTCTTA+TGG - Chr7:90996664-90996683 MsG0780041447.01.T01:intron 25.0%
!! CATATTATTGATAGCATGAT+TGG - Chr7:90996566-90996585 MsG0780041447.01.T01:intron 25.0%
AAGTTCAGAAAATCAAGTCT+AGG - Chr7:90997242-90997261 MsG0780041447.01.T01:five_prime_UTR 30.0%
ATCCAACTAACTCTCTAATT+AGG - Chr7:90996350-90996369 MsG0780041447.01.T01:intron 30.0%
ATTTATACCAAGAGAAGACT+TGG + Chr7:90995859-90995878 None:intergenic 30.0%
GAAACATTTGTGTTTCCTAA+AGG - Chr7:90997056-90997075 MsG0780041447.01.T01:CDS 30.0%
GAGCAATATGAATTATGAGT+TGG + Chr7:90995907-90995926 None:intergenic 30.0%
GCTTGAGTCAAAATATTATC+TGG + Chr7:90997202-90997221 None:intergenic 30.0%
GGGAAAAAGTGAAAATGAAA+AGG + Chr7:90996276-90996295 None:intergenic 30.0%
TTAATTATGGATCGAAAAGC+TGG - Chr7:90996237-90996256 MsG0780041447.01.T01:CDS 30.0%
TTGAAGGTCAATTAGATGTT+GGG - Chr7:90996985-90997004 MsG0780041447.01.T01:CDS 30.0%
TTGGAAATGAACAATCCTTT+AGG + Chr7:90997074-90997093 None:intergenic 30.0%
TTGTCTTGCCTACATATAAT+TGG - Chr7:90995950-90995969 MsG0780041447.01.T01:CDS 30.0%
! AAAATATTATCTGGAACAGG+TGG + Chr7:90997193-90997212 None:intergenic 30.0%
! AATTATGAGTTGGAATGAAG+TGG + Chr7:90995897-90995916 None:intergenic 30.0%
! CGATATACATACTTGTTTCT+TGG - Chr7:90996632-90996651 MsG0780041447.01.T01:intron 30.0%
! GTCAAAATATTATCTGGAAC+AGG + Chr7:90997196-90997215 None:intergenic 30.0%
!! GCTTCATCATTTGTTATGAT+CGG + Chr7:90996008-90996027 None:intergenic 30.0%
!!! AATTGGTTTTCAAAAGTCTC+CGG - Chr7:90995967-90995986 MsG0780041447.01.T01:CDS 30.0%
AGTTGGAATGAAGTGGTAAT+GGG + Chr7:90995890-90995909 None:intergenic 35.0%
CAATAGTCAATTGCAAGGAA+CGG - Chr7:90997135-90997154 MsG0780041447.01.T01:five_prime_UTR 35.0%
CTTGAAGGTCAATTAGATGT+TGG - Chr7:90996984-90997003 MsG0780041447.01.T01:CDS 35.0%
GAGATTGTGTTTGTTCTTGA+AGG - Chr7:90996969-90996988 MsG0780041447.01.T01:intron 35.0%
GGATTCAATAGTCAATTGCA+AGG - Chr7:90997130-90997149 MsG0780041447.01.T01:five_prime_UTR 35.0%
GTAGAAGCAAACAAAGTAAG+AGG + Chr7:90997169-90997188 None:intergenic 35.0%
GTTCATTTCCAAAAGAACAG+TGG - Chr7:90997082-90997101 MsG0780041447.01.T01:five_prime_UTR 35.0%
TCGGTGACAAACAAATTAAC+CGG + Chr7:90995989-90996008 None:intergenic 35.0%
TGGTTGAATTATTGTGATGG+TGG - Chr7:90996684-90996703 MsG0780041447.01.T01:intron 35.0%
TTAACAGCGATTCTAGTGAA+TGG - Chr7:90996732-90996751 MsG0780041447.01.T01:intron 35.0%
TTGACTCAAGCATTCCAAAT+TGG - Chr7:90997211-90997230 MsG0780041447.01.T01:five_prime_UTR 35.0%
! AAAAGCCATATCAAAGGTGT+TGG + Chr7:90996380-90996399 None:intergenic 35.0%
! AACATTGGCTAAGGTTACTA+AGG + Chr7:90996850-90996869 None:intergenic 35.0%
! CTTGATTTTCTGAACTTCCT+TGG + Chr7:90997239-90997258 None:intergenic 35.0%
! GTACATAACCACTGTTCTTT+TGG + Chr7:90997093-90997112 None:intergenic 35.0%
!! GATTTTCTGAACATTGGCTA+AGG + Chr7:90996859-90996878 None:intergenic 35.0%
ACAGAGGTCTTGAAGATTGT+CGG + Chr7:90996082-90996101 None:intergenic 40.0%
AGCATTCCAAATTGGTACCA+AGG - Chr7:90997219-90997238 MsG0780041447.01.T01:five_prime_UTR 40.0%
GAACTTCCTTGGTACCAATT+TGG + Chr7:90997228-90997247 None:intergenic 40.0%
GAGTTGGAATGAAGTGGTAA+TGG + Chr7:90995891-90995910 None:intergenic 40.0%
GGCCTAATTAGAGAGTTAGT+TGG + Chr7:90996355-90996374 None:intergenic 40.0%
! TCCTGGGATTTTCTGAACAT+TGG + Chr7:90996865-90996884 None:intergenic 40.0%
!! GGAACCAAATGTGTTGTTTG+TGG + Chr7:90996829-90996848 None:intergenic 40.0%
AAATGATGAAGCTCCTCGCA+GGG - Chr7:90996016-90996035 MsG0780041447.01.T01:intron 45.0%
AACACAATCTCAGTTGCACG+TGG + Chr7:90996960-90996979 None:intergenic 45.0%
AATCCTGCAATTACTGCAGC+AGG + Chr7:90997115-90997134 None:intergenic 45.0%
ACACAATCTCAGTTGCACGT+GGG + Chr7:90996959-90996978 None:intergenic 45.0%
ATGTAACGGTACCAGAAGCA+AGG + Chr7:90996113-90996132 None:intergenic 45.0%
CAGAGGTCTTGAAGATTGTC+GGG + Chr7:90996081-90996100 None:intergenic 45.0%
CTCTCTTCCAAGTCTTCTCT+TGG - Chr7:90995849-90995868 MsG0780041447.01.T01:CDS 45.0%
GAAATCAGCTGCGGTTACAT+TGG + Chr7:90996778-90996797 None:intergenic 45.0%
GCCAATGTTCAGAAAATCCC+AGG - Chr7:90996861-90996880 MsG0780041447.01.T01:intron 45.0%
GCCTACCAACACCTTTGATA+TGG - Chr7:90996372-90996391 MsG0780041447.01.T01:intron 45.0%
GGAGCCACAAACAACACATT+TGG - Chr7:90996822-90996841 MsG0780041447.01.T01:intron 45.0%
TGGAAGAGAGACAGAAGACT+TGG + Chr7:90995839-90995858 None:intergenic 45.0%
!! AATGTGTTGTTTGTGGCTCC+TGG + Chr7:90996822-90996841 None:intergenic 45.0%
!! CAACACACTTGGTGTGTCAT+TGG - Chr7:90996887-90996906 MsG0780041447.01.T01:intron 45.0%
!! CGTATTGACTATGCTGTAGG+TGG - Chr7:90996912-90996931 MsG0780041447.01.T01:intron 45.0%
!! GCACGTATTGACTATGCTGT+AGG - Chr7:90996909-90996928 MsG0780041447.01.T01:intron 45.0%
!! GCCATATCAAAGGTGTTGGT+AGG + Chr7:90996376-90996395 None:intergenic 45.0%
!! ATTATTATTAATTAATGTAA+CGG + Chr7:90996127-90996146 None:intergenic 5.0%
AAGCAAGGTCTGCAACACAG+AGG + Chr7:90996098-90996117 None:intergenic 50.0%
ACACCAAGTGTGTTGAGTCC+TGG + Chr7:90996882-90996901 None:intergenic 50.0%
ACCAACGTACTAGCCAAACC+AGG - Chr7:90996801-90996820 MsG0780041447.01.T01:intron 50.0%
ATCCCAGGACTCAACACACT+TGG - Chr7:90996876-90996895 MsG0780041447.01.T01:intron 50.0%
CAAATGATGAAGCTCCTCGC+AGG - Chr7:90996015-90996034 MsG0780041447.01.T01:intron 50.0%
CACCAAGTGTGTTGAGTCCT+GGG + Chr7:90996881-90996900 None:intergenic 50.0%
GTACCTGCTGCAGTAATTGC+AGG - Chr7:90997109-90997128 MsG0780041447.01.T01:five_prime_UTR 50.0%
GTTGTTTGTGGCTCCTGGTT+TGG + Chr7:90996817-90996836 None:intergenic 50.0%
TGTGTTGCAGACCTTGCTTC+TGG - Chr7:90996099-90996118 MsG0780041447.01.T01:CDS 50.0%
! GTTGGTGGAGAAATCAGCTG+CGG + Chr7:90996787-90996806 None:intergenic 50.0%
! TGGTTTGGCTAGTACGTTGG+TGG + Chr7:90996802-90996821 None:intergenic 50.0%
!! TCCTGGTTTGGCTAGTACGT+TGG + Chr7:90996805-90996824 None:intergenic 50.0%
GCTGCGGTTACATTGGAAGC+TGG + Chr7:90996771-90996790 None:intergenic 55.0%
CACGTGGGTGAGTGTGAGGT+GGG + Chr7:90996944-90996963 None:intergenic 60.0%
CCAGAAGCAACAACCCTGCG+AGG + Chr7:90996032-90996051 None:intergenic 60.0%
GGGATCAGCAGTGACAGAGG+TGG + Chr7:90996061-90996080 None:intergenic 60.0%
GTCGGGATCAGCAGTGACAG+AGG + Chr7:90996064-90996083 None:intergenic 60.0%
GTTGCACGTGGGTGAGTGTG+AGG + Chr7:90996948-90996967 None:intergenic 60.0%
! CCTCGCAGGGTTGTTGCTTC+TGG - Chr7:90996029-90996048 MsG0780041447.01.T01:intron 60.0%
GCACGTGGGTGAGTGTGAGG+TGG + Chr7:90996945-90996964 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr7 gene 90995818 90997279 90995818 ID=MsG0780041447.01;Name=MsG0780041447.01
Chr7 mRNA 90995818 90997279 90995818 ID=MsG0780041447.01.T01;Parent=MsG0780041447.01;Name=MsG0780041447.01.T01;_AED=0.28;_eAED=0.28;_QI=200|0.5|0.33|1|1|1|3|0|190
Chr7 exon 90995818 90996019 90995818 ID=MsG0780041447.01.T01:exon:3912;Parent=MsG0780041447.01.T01
Chr7 exon 90996091 90996358 90996091 ID=MsG0780041447.01.T01:exon:3911;Parent=MsG0780041447.01.T01
Chr7 exon 90996977 90997279 90996977 ID=MsG0780041447.01.T01:exon:3910;Parent=MsG0780041447.01.T01
Chr7 five_prime_UTR 90997080 90997279 90997080 ID=MsG0780041447.01.T01:five_prime_utr;Parent=MsG0780041447.01.T01
Chr7 CDS 90996977 90997079 90996977 ID=MsG0780041447.01.T01:cds;Parent=MsG0780041447.01.T01
Chr7 CDS 90996091 90996358 90996091 ID=MsG0780041447.01.T01:cds;Parent=MsG0780041447.01.T01
Chr7 CDS 90995818 90996019 90995818 ID=MsG0780041447.01.T01:cds;Parent=MsG0780041447.01.T01
Gene Sequence

>MsG0780041447.01.T01

ATGATGAAGCTCCTCGCAGGGTTGTTGCTTCTGGTGTTAACCACCTCTGTCACTGCTGATCCCGACAATCTTCAAGACCTCTGTGTTGCAGACCTTGCTTCTGCGATTCTAGTGAATGGATTCACGTGCAAACCAGCTTCCAATGTAACCGCAGCTGATTTCTCCACCAACGTACTAGCCAAACCAGGAGCCACAAACAACACATTTGGTTCCTTAGTAACCTTAGCCAATGTTCAGAAAATCCCAGGACTCAACACACTTGGTGTGTCATTGGCACGTATTGACTATGCTGTAGGTGGACTGAACCCACCTCACACTCACCCACGTGCAACTGAGATTGTGTTTGTTCTTGAAGGTCAATTAGATGTTGGGATTGTTCATTTCCAAAAGAACAGTGGTTATGTACCTGCTGCAGTAATTGCAGGATTCAATAGTCAATTGCAAGGAACGGTGAATATTCCTCTTACTTTGTTTGCTTCTACACCACCTGTTCCAGATAATATTTTGACTCAAGCATTCCAAATTGGTACCAAGGAAGTTCAGAAAATCAAGTCTAGGCTTGCACCCAAGTAG

Protein sequence

>MsG0780041447.01.T01

MMKLLAGLLLLVLTTSVTADPDNLQDLCVADLASAILVNGFTCKPASNVTAADFSTNVLAKPGATNNTFGSLVTLANVQKIPGLNTLGVSLARIDYAVGGLNPPHTHPRATEIVFVLEGQLDVGIVHFQKNSGYVPAAVIAGFNSQLQGTVNIPLTLFASTPPVPDNILTQAFQIGTKEVQKIKSRLAPK*