Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180005942.01.T01 | XP_013470162.1 | 91.244 | 434 | 11 | 1 | 1 | 434 | 5 | 411 | 0 | 813 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180005942.01.T01 | Q65XS5 | 31.437 | 334 | 156 | 9 | 121 | 410 | 85 | 389 | 2.45E-39 | 149 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180005942.01.T01 | A0A072W1N5 | 91.244 | 434 | 11 | 1 | 1 | 434 | 5 | 411 | 0.0 | 813 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180005942.01 | MsG0380017020.01 | 0.805995 | 1.019617e-49 | 5.472331e-47 |
| MsG0180005942.01 | MsG0580027073.01 | 0.814642 | 1.388836e-51 | 9.370510e-49 |
| MsG0180005942.01 | MsG0580027227.01 | 0.825949 | 3.546658e-54 | 3.280291e-51 |
PPI
| Gene1 | Gene2 | Type |
|---|---|---|
| MsG0180005942.01 | MsG0280006296.01 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180005942.01.T01 | MTR_1g110290 | 91.244 | 434 | 11 | 1 | 1 | 434 | 5 | 411 | 0.0 | 813 |
| MsG0180005942.01.T01 | MTR_5g055480 | 63.397 | 418 | 123 | 3 | 1 | 416 | 1 | 390 | 0.0 | 545 |
| MsG0180005942.01.T01 | MTR_6g083830 | 50.559 | 447 | 162 | 8 | 1 | 416 | 1 | 419 | 5.90e-152 | 437 |
| MsG0180005942.01.T01 | MTR_5g006920 | 50.000 | 448 | 160 | 9 | 4 | 416 | 3 | 421 | 3.44e-143 | 415 |
| MsG0180005942.01.T01 | MTR_5g006930 | 51.914 | 418 | 162 | 8 | 4 | 416 | 3 | 386 | 1.60e-140 | 407 |
| MsG0180005942.01.T01 | MTR_1g016880 | 51.462 | 342 | 135 | 5 | 78 | 416 | 63 | 376 | 3.34e-125 | 368 |
| MsG0180005942.01.T01 | MTR_3g104840 | 45.080 | 437 | 173 | 8 | 1 | 416 | 3 | 393 | 3.50e-124 | 366 |
| MsG0180005942.01.T01 | MTR_2g005350 | 50.595 | 336 | 136 | 3 | 83 | 416 | 131 | 438 | 2.23e-116 | 347 |
| MsG0180005942.01.T01 | MTR_8g015500 | 49.552 | 335 | 138 | 5 | 83 | 414 | 105 | 411 | 4.22e-111 | 333 |
| MsG0180005942.01.T01 | MTR_1g009960 | 37.037 | 405 | 186 | 11 | 28 | 407 | 30 | 390 | 4.14e-71 | 230 |
| MsG0180005942.01.T01 | MTR_3g108740 | 38.551 | 345 | 157 | 7 | 87 | 407 | 58 | 371 | 1.64e-69 | 225 |
| MsG0180005942.01.T01 | MTR_4g127550 | 37.673 | 361 | 164 | 10 | 85 | 422 | 72 | 394 | 1.96e-68 | 223 |
| MsG0180005942.01.T01 | MTR_2g037600 | 38.701 | 354 | 155 | 11 | 83 | 409 | 68 | 386 | 2.87e-66 | 217 |
| MsG0180005942.01.T01 | MTR_1g009960 | 38.202 | 356 | 170 | 9 | 28 | 375 | 30 | 343 | 6.90e-66 | 215 |
| MsG0180005942.01.T01 | MTR_2g037620 | 38.462 | 312 | 139 | 7 | 120 | 409 | 97 | 377 | 6.18e-65 | 213 |
| MsG0180005942.01.T01 | MTR_2g024120 | 34.402 | 343 | 156 | 10 | 105 | 407 | 46 | 359 | 1.03e-47 | 168 |
| MsG0180005942.01.T01 | MTR_8g094180 | 33.041 | 342 | 144 | 11 | 120 | 410 | 55 | 362 | 9.78e-46 | 162 |
| MsG0180005942.01.T01 | MTR_8g094180 | 32.881 | 295 | 132 | 8 | 120 | 380 | 55 | 317 | 2.43e-42 | 152 |
| MsG0180005942.01.T01 | MTR_3g106930 | 33.824 | 340 | 181 | 10 | 88 | 414 | 66 | 374 | 1.16e-40 | 149 |
| MsG0180005942.01.T01 | MTR_1g048320 | 30.861 | 337 | 182 | 9 | 95 | 414 | 39 | 341 | 2.70e-35 | 134 |
| MsG0180005942.01.T01 | MTR_2g087610 | 33.230 | 322 | 153 | 13 | 121 | 414 | 78 | 365 | 1.04e-34 | 132 |
| MsG0180005942.01.T01 | MTR_1g031060 | 31.378 | 341 | 178 | 12 | 95 | 414 | 54 | 359 | 8.15e-33 | 127 |
| MsG0180005942.01.T01 | MTR_1g031080 | 32.443 | 262 | 136 | 8 | 175 | 414 | 47 | 289 | 1.25e-27 | 111 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180005942.01.T01 | AT1G68390 | 59.882 | 339 | 104 | 5 | 82 | 416 | 98 | 408 | 4.81e-143 | 414 |
| MsG0180005942.01.T01 | AT5G11730 | 52.381 | 336 | 130 | 4 | 83 | 416 | 79 | 386 | 5.39e-125 | 368 |
| MsG0180005942.01.T01 | AT3G21310 | 51.549 | 355 | 140 | 5 | 66 | 416 | 57 | 383 | 3.69e-124 | 365 |
| MsG0180005942.01.T01 | AT3G21310 | 51.549 | 355 | 140 | 5 | 66 | 416 | 57 | 383 | 3.69e-124 | 365 |
| MsG0180005942.01.T01 | AT1G68380 | 49.746 | 394 | 160 | 7 | 29 | 416 | 31 | 392 | 1.40e-122 | 362 |
| MsG0180005942.01.T01 | AT1G73810 | 47.696 | 434 | 175 | 9 | 4 | 416 | 16 | 418 | 8.50e-120 | 355 |
| MsG0180005942.01.T01 | AT5G25970 | 51.497 | 334 | 132 | 4 | 83 | 414 | 80 | 385 | 1.23e-119 | 354 |
| MsG0180005942.01.T01 | AT5G25970 | 51.497 | 334 | 132 | 4 | 83 | 414 | 80 | 385 | 1.23e-119 | 354 |
| MsG0180005942.01.T01 | AT5G25970 | 51.497 | 334 | 132 | 4 | 83 | 414 | 80 | 385 | 1.23e-119 | 354 |
| MsG0180005942.01.T01 | AT1G10880 | 54.088 | 318 | 116 | 4 | 95 | 411 | 93 | 381 | 2.38e-118 | 351 |
| MsG0180005942.01.T01 | AT1G10280 | 42.118 | 425 | 189 | 6 | 21 | 416 | 16 | 412 | 7.60e-117 | 348 |
| MsG0180005942.01.T01 | AT1G51770 | 49.582 | 359 | 145 | 6 | 66 | 416 | 62 | 392 | 4.72e-116 | 345 |
| MsG0180005942.01.T01 | AT5G16170 | 44.059 | 404 | 177 | 6 | 31 | 416 | 37 | 409 | 1.51e-111 | 334 |
| MsG0180005942.01.T01 | AT1G51770 | 45.125 | 359 | 134 | 7 | 66 | 416 | 62 | 365 | 3.61e-99 | 301 |
| MsG0180005942.01.T01 | AT4G30060 | 38.068 | 352 | 161 | 8 | 82 | 409 | 71 | 389 | 1.06e-70 | 229 |
| MsG0180005942.01.T01 | AT4G30060 | 38.068 | 352 | 161 | 8 | 82 | 409 | 71 | 389 | 1.06e-70 | 229 |
| MsG0180005942.01.T01 | AT2G19160 | 37.183 | 355 | 164 | 10 | 82 | 411 | 68 | 388 | 7.59e-70 | 226 |
| MsG0180005942.01.T01 | AT2G19160 | 37.183 | 355 | 164 | 10 | 82 | 411 | 68 | 388 | 7.59e-70 | 226 |
| MsG0180005942.01.T01 | AT4G31350 | 38.782 | 312 | 142 | 6 | 120 | 411 | 88 | 370 | 1.61e-68 | 222 |
| MsG0180005942.01.T01 | AT4G31350 | 38.782 | 312 | 142 | 6 | 120 | 411 | 88 | 370 | 1.61e-68 | 222 |
| MsG0180005942.01.T01 | AT4G31350 | 38.782 | 312 | 142 | 6 | 120 | 411 | 88 | 370 | 1.61e-68 | 222 |
| MsG0180005942.01.T01 | AT4G25870 | 38.279 | 337 | 156 | 8 | 98 | 411 | 75 | 382 | 4.56e-66 | 216 |
| MsG0180005942.01.T01 | AT4G31350 | 37.460 | 315 | 137 | 5 | 120 | 411 | 88 | 365 | 1.00e-64 | 212 |
| MsG0180005942.01.T01 | AT3G21310 | 48.198 | 222 | 85 | 3 | 66 | 284 | 57 | 251 | 1.22e-62 | 203 |
| MsG0180005942.01.T01 | AT5G57270 | 36.441 | 354 | 151 | 9 | 80 | 411 | 80 | 381 | 1.19e-61 | 205 |
| MsG0180005942.01.T01 | AT5G57270 | 36.441 | 354 | 151 | 9 | 80 | 411 | 80 | 381 | 1.19e-61 | 205 |
| MsG0180005942.01.T01 | AT5G57270 | 36.441 | 354 | 151 | 9 | 80 | 411 | 80 | 381 | 1.19e-61 | 205 |
| MsG0180005942.01.T01 | AT5G57270 | 36.441 | 354 | 151 | 9 | 80 | 411 | 80 | 381 | 1.19e-61 | 205 |
| MsG0180005942.01.T01 | AT5G57270 | 36.441 | 354 | 151 | 9 | 80 | 411 | 80 | 381 | 1.19e-61 | 205 |
| MsG0180005942.01.T01 | AT5G25330 | 32.840 | 405 | 210 | 15 | 26 | 414 | 1 | 359 | 2.21e-49 | 172 |
| MsG0180005942.01.T01 | AT1G62305 | 34.821 | 336 | 149 | 12 | 111 | 407 | 60 | 364 | 1.57e-46 | 165 |
| MsG0180005942.01.T01 | AT1G11940 | 35.443 | 316 | 140 | 11 | 120 | 398 | 73 | 361 | 1.25e-45 | 162 |
| MsG0180005942.01.T01 | AT5G14550 | 32.836 | 335 | 151 | 9 | 117 | 408 | 61 | 364 | 7.09e-45 | 160 |
| MsG0180005942.01.T01 | AT5G14550 | 32.738 | 336 | 152 | 9 | 116 | 408 | 60 | 364 | 8.49e-45 | 160 |
| MsG0180005942.01.T01 | AT3G52060 | 32.047 | 337 | 176 | 11 | 95 | 414 | 43 | 343 | 3.75e-44 | 157 |
| MsG0180005942.01.T01 | AT5G14550 | 34.386 | 285 | 140 | 7 | 117 | 383 | 61 | 316 | 7.85e-44 | 157 |
| MsG0180005942.01.T01 | AT1G62305 | 37.959 | 245 | 104 | 7 | 111 | 336 | 60 | 275 | 3.40e-41 | 149 |
| MsG0180005942.01.T01 | AT1G11940 | 41.584 | 202 | 90 | 5 | 120 | 320 | 73 | 247 | 2.75e-39 | 142 |
| MsG0180005942.01.T01 | AT5G22070 | 30.854 | 363 | 171 | 15 | 91 | 414 | 38 | 359 | 5.11e-39 | 144 |
| MsG0180005942.01.T01 | AT5G14550 | 33.228 | 316 | 148 | 11 | 117 | 408 | 61 | 337 | 6.09e-37 | 138 |
| MsG0180005942.01.T01 | AT4G32290 | 30.361 | 415 | 215 | 16 | 29 | 414 | 7 | 376 | 2.72e-34 | 132 |
| MsG0180005942.01.T01 | AT1G62305 | 31.548 | 336 | 136 | 12 | 111 | 407 | 60 | 340 | 7.37e-33 | 127 |
Find 69 sgRNAs with CRISPR-Local
Find 117 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTCACCTATCTCCTAATTT+TGG | 0.184517 | 1:-97826916 | MsG0180005942.01.T01:CDS |
| GATAGTAACTTATGTTTATT+AGG | 0.206271 | 1:+97825158 | None:intergenic |
| CATTCTAATCCTTCTTATAA+TGG | 0.257546 | 1:-97826534 | MsG0180005942.01.T01:CDS |
| TCATCCATATCATGCATAAT+TGG | 0.279929 | 1:+97826723 | None:intergenic |
| TCTCTGTTGTAATAAGTTAC+TGG | 0.295519 | 1:+97825878 | None:intergenic |
| TCAACTTCCTGCATTATAGA+AGG | 0.304729 | 1:+97825824 | None:intergenic |
| TCCTCCAATTATGCATGATA+TGG | 0.306477 | 1:-97826727 | MsG0180005942.01.T01:CDS |
| TTAAACCAAATACCAAAATT+AGG | 0.314110 | 1:+97826904 | None:intergenic |
| CTTTGGTTAGAATAAAGTTT+GGG | 0.319095 | 1:-97825427 | MsG0180005942.01.T01:CDS |
| CTCTGTCCATTTCAAACCAT+TGG | 0.344014 | 1:+97825546 | None:intergenic |
| AAATAAACAGTGATGGATAT+TGG | 0.366178 | 1:-97825856 | MsG0180005942.01.T01:CDS |
| GGGAAACCTCGGGTAACATT+TGG | 0.376467 | 1:+97825591 | None:intergenic |
| GGTGACAAATGTTGTGTTCT+TGG | 0.377523 | 1:+97826801 | None:intergenic |
| TTGGGGAAGGAAATTCAAAT+AGG | 0.384738 | 1:-97825409 | MsG0180005942.01.T01:CDS |
| TGACTTGGGTTGACTGGTCA+AGG | 0.388364 | 1:-97825382 | MsG0180005942.01.T01:CDS |
| CGTTCTTGTTTCACCGCAAT+CGG | 0.394209 | 1:+97826777 | None:intergenic |
| ACTTTGGTTAGAATAAAGTT+TGG | 0.400537 | 1:-97825428 | MsG0180005942.01.T01:CDS |
| TCTTTGATATAGAGATTGAT+TGG | 0.407880 | 1:+97826970 | None:intergenic |
| AAGAAATGCAAGTATAATAA+TGG | 0.408664 | 1:-97825290 | MsG0180005942.01.T01:CDS |
| AACTTTATTCTAACCAAAGT+TGG | 0.411378 | 1:+97825431 | None:intergenic |
| GAAGTTGAAGAGTGGTATGC+AGG | 0.429293 | 1:+97825706 | None:intergenic |
| TTCAAATAGGACTTTGACTT+GGG | 0.430817 | 1:-97825396 | MsG0180005942.01.T01:CDS |
| AAATACCAAAATTAGGAGAT+AGG | 0.433518 | 1:+97826911 | None:intergenic |
| AGGGTCCCAATGGTTTGAAA+TGG | 0.440613 | 1:-97825552 | MsG0180005942.01.T01:CDS |
| TCTGTCCATTTCAAACCATT+GGG | 0.442280 | 1:+97825547 | None:intergenic |
| GCTCTTGAAGATTGCACCTA+AGG | 0.445552 | 1:-97825207 | MsG0180005942.01.T01:CDS |
| TATAATGCAGGAAGTTGAAT+GGG | 0.448864 | 1:-97825819 | MsG0180005942.01.T01:CDS |
| AAGAGCTTTGACAAAGTACT+AGG | 0.449050 | 1:+97825224 | None:intergenic |
| TCCCTCAACGAATGGAGAAA+AGG | 0.452596 | 1:-97825572 | MsG0180005942.01.T01:CDS |
| GACTTGGGTTGACTGGTCAA+GGG | 0.459375 | 1:-97825381 | MsG0180005942.01.T01:CDS |
| AGGTGAGAAAATTAATAAAG+TGG | 0.465868 | 1:+97826931 | None:intergenic |
| TGAACATTACTTGCCAACTT+TGG | 0.466371 | 1:-97825444 | MsG0180005942.01.T01:CDS |
| CTGATATGAGAACAAATCGT+TGG | 0.474721 | 1:+97825732 | None:intergenic |
| TGGATGATGAAGAATTGTTA+TGG | 0.474924 | 1:-97826707 | MsG0180005942.01.T01:CDS |
| GGACTTTGACTTGGGTTGAC+TGG | 0.478036 | 1:-97825388 | MsG0180005942.01.T01:CDS |
| CCCTCAACGAATGGAGAAAA+GGG | 0.478730 | 1:-97825571 | MsG0180005942.01.T01:CDS |
| CGAGAAGTGCATTTGATAGC+AGG | 0.490846 | 1:+97825765 | None:intergenic |
| AACTAACCCTTCTATAATGC+AGG | 0.491204 | 1:-97825831 | MsG0180005942.01.T01:CDS |
| CTATAATGCAGGAAGTTGAA+TGG | 0.492949 | 1:-97825820 | MsG0180005942.01.T01:CDS |
| TGTTCAAACTGCATAACCTT+AGG | 0.496914 | 1:+97825191 | None:intergenic |
| ACAAGAACGTGTAGGATTGA+AGG | 0.500595 | 1:-97826763 | MsG0180005942.01.T01:CDS |
| CGACCACGACCGACCGAGCT+AGG | 0.504404 | 1:+97825623 | None:intergenic |
| CAACTTCCTGCATTATAGAA+GGG | 0.516479 | 1:+97825825 | None:intergenic |
| ATTCAAATAGGACTTTGACT+TGG | 0.517129 | 1:-97825397 | MsG0180005942.01.T01:CDS |
| TTGGTATTTGGTTTAACACT+TGG | 0.522061 | 1:-97826897 | MsG0180005942.01.T01:CDS |
| GATCCTAGCTCGGTCGGTCG+TGG | 0.528787 | 1:-97825626 | MsG0180005942.01.T01:CDS |
| GTTAGAATAAAGTTTGGGGA+AGG | 0.530410 | 1:-97825422 | MsG0180005942.01.T01:CDS |
| ACTTGGGTTGACTGGTCAAG+GGG | 0.535261 | 1:-97825380 | MsG0180005942.01.T01:CDS |
| CCGAGGTTTCCCTCAACGAA+TGG | 0.536541 | 1:-97825580 | MsG0180005942.01.T01:CDS |
| GTCTTATGATGATCCTAGCT+CGG | 0.545878 | 1:-97825636 | MsG0180005942.01.T01:CDS |
| TGCAGTTTGAACACTACGAC+AGG | 0.553841 | 1:-97825181 | MsG0180005942.01.T01:CDS |
| TGGGTTGACTGGTCAAGGGG+TGG | 0.553874 | 1:-97825377 | MsG0180005942.01.T01:CDS |
| AACAGAGAAATAAACAGTGA+TGG | 0.561304 | 1:-97825863 | MsG0180005942.01.T01:CDS |
| AGCAAACAGAAAACATGCAT+TGG | 0.562151 | 1:+97825259 | None:intergenic |
| TCCATATCATGCATAATTGG+AGG | 0.565222 | 1:+97826726 | None:intergenic |
| CCATTCGTTGAGGGAAACCT+CGG | 0.566873 | 1:+97825580 | None:intergenic |
| ATGGACAGAGAACTTGCTCT+AGG | 0.576538 | 1:-97825533 | MsG0180005942.01.T01:CDS |
| GGGTGTGATCCATTATAAGA+AGG | 0.577180 | 1:+97826525 | None:intergenic |
| ATTGTTGAGAAGTTGAAGAG+TGG | 0.586949 | 1:+97825698 | None:intergenic |
| ACATTTGTCACCGCCGATTG+CGG | 0.594351 | 1:-97826790 | MsG0180005942.01.T01:CDS |
| CATTCGTTGAGGGAAACCTC+GGG | 0.602596 | 1:+97825581 | None:intergenic |
| ATATCATGCATAATTGGAGG+AGG | 0.604452 | 1:+97826729 | None:intergenic |
| TCTTGTTTCACCGCAATCGG+CGG | 0.617064 | 1:+97826780 | None:intergenic |
| AATGGAGAAAAGGGTCCCAA+TGG | 0.634468 | 1:-97825562 | MsG0180005942.01.T01:CDS |
| TTTGGTTAGAATAAAGTTTG+GGG | 0.642533 | 1:-97825426 | MsG0180005942.01.T01:CDS |
| TAGCATCCAAATGTTACCCG+AGG | 0.647404 | 1:-97825597 | MsG0180005942.01.T01:CDS |
| TATGATGATCCTAGCTCGGT+CGG | 0.674006 | 1:-97825632 | MsG0180005942.01.T01:CDS |
| ATAATGCAGGAAGTTGAATG+GGG | 0.703755 | 1:-97825818 | MsG0180005942.01.T01:CDS |
| GCGGTGAAACAAGAACGTGT+AGG | 0.726920 | 1:-97826771 | MsG0180005942.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTTTATTTATTCTTTCTATT+TGG | + | Chr1:97825860-97825879 | None:intergenic | 15.0% |
| !! | AAGAAATGCAAGTATAATAA+TGG | - | Chr1:97826842-97826861 | MsG0180005942.01.T01:CDS | 20.0% |
| !! | GATAGTAACTTATGTTTATT+AGG | + | Chr1:97826977-97826996 | None:intergenic | 20.0% |
| !! | TTAAACCAAATACCAAAATT+AGG | + | Chr1:97825231-97825250 | None:intergenic | 20.0% |
| !!! | ATATTGTGAACTTTTAACTA+TGG | - | Chr1:97826028-97826047 | MsG0180005942.01.T01:intron | 20.0% |
| !!! | TGATGTTAATGTTAAGTTTT+TGG | - | Chr1:97826805-97826824 | MsG0180005942.01.T01:CDS | 20.0% |
| ! | AAATACCAAAATTAGGAGAT+AGG | + | Chr1:97825224-97825243 | None:intergenic | 25.0% |
| ! | AACTTTATTCTAACCAAAGT+TGG | + | Chr1:97826704-97826723 | None:intergenic | 25.0% |
| ! | ACTTTGGTTAGAATAAAGTT+TGG | - | Chr1:97826704-97826723 | MsG0180005942.01.T01:CDS | 25.0% |
| ! | AGGTGAGAAAATTAATAAAG+TGG | + | Chr1:97825204-97825223 | None:intergenic | 25.0% |
| ! | ATTGAAAAATGATCATTGCT+TGG | - | Chr1:97825759-97825778 | MsG0180005942.01.T01:CDS | 25.0% |
| ! | CATTCTAATCCTTCTTATAA+TGG | - | Chr1:97825598-97825617 | MsG0180005942.01.T01:CDS | 25.0% |
| ! | CTTTGGTTAGAATAAAGTTT+GGG | - | Chr1:97826705-97826724 | MsG0180005942.01.T01:CDS | 25.0% |
| ! | TCTTTGATATAGAGATTGAT+TGG | + | Chr1:97825165-97825184 | None:intergenic | 25.0% |
| ! | TTTGGTTAGAATAAAGTTTG+GGG | - | Chr1:97826706-97826725 | MsG0180005942.01.T01:CDS | 25.0% |
| !! | AAAAACATGAATGCAACTTT+TGG | + | Chr1:97825499-97825518 | None:intergenic | 25.0% |
| !!! | AAATAAACAGTGATGGATAT+TGG | - | Chr1:97826276-97826295 | MsG0180005942.01.T01:intron | 25.0% |
| !!! | TATCTCCTAATTTTGGTATT+TGG | - | Chr1:97825223-97825242 | MsG0180005942.01.T01:CDS | 25.0% |
| !!! | TTAAGTTTTTGGAGAGATTA+AGG | - | Chr1:97826816-97826835 | MsG0180005942.01.T01:CDS | 25.0% |
| AACAGAGAAATAAACAGTGA+TGG | - | Chr1:97826269-97826288 | MsG0180005942.01.T01:intron | 30.0% | |
| ATTCAAATAGGACTTTGACT+TGG | - | Chr1:97826735-97826754 | MsG0180005942.01.T01:CDS | 30.0% | |
| CAGATTAAGACAATAGAGAA+TGG | + | Chr1:97825736-97825755 | None:intergenic | 30.0% | |
| TATAATGCAGGAAGTTGAAT+GGG | - | Chr1:97826313-97826332 | MsG0180005942.01.T01:intron | 30.0% | |
| TCATCCATATCATGCATAAT+TGG | + | Chr1:97825412-97825431 | None:intergenic | 30.0% | |
| TCTCTGTTGTAATAAGTTAC+TGG | + | Chr1:97826257-97826276 | None:intergenic | 30.0% | |
| TCTTAGCTAGAATGATGATA+TGG | - | Chr1:97825975-97825994 | MsG0180005942.01.T01:intron | 30.0% | |
| TGGATGATGAAGAATTGTTA+TGG | - | Chr1:97825425-97825444 | MsG0180005942.01.T01:CDS | 30.0% | |
| TTGCAATACTCTTGAAAAAC+TGG | + | Chr1:97826650-97826669 | None:intergenic | 30.0% | |
| ! | ATATAACAAGACTTTTGCAC+AGG | + | Chr1:97825819-97825838 | None:intergenic | 30.0% |
| ! | ATGCATACTTGTTTCTTTGT+AGG | - | Chr1:97826215-97826234 | MsG0180005942.01.T01:intron | 30.0% |
| ! | TTCAAATAGGACTTTGACTT+GGG | - | Chr1:97826736-97826755 | MsG0180005942.01.T01:CDS | 30.0% |
| ! | TTGGTATTTGGTTTAACACT+TGG | - | Chr1:97825235-97825254 | MsG0180005942.01.T01:CDS | 30.0% |
| !! | AGTTTTTCAAAGGACATGAA+GGG | - | Chr1:97825557-97825576 | MsG0180005942.01.T01:CDS | 30.0% |
| !! | TGCATTCATGTTTTTGACAA+GGG | - | Chr1:97825504-97825523 | MsG0180005942.01.T01:CDS | 30.0% |
| !! | TTGCATTCATGTTTTTGACA+AGG | - | Chr1:97825503-97825522 | MsG0180005942.01.T01:CDS | 30.0% |
| !!! | GTTTTTCAAGAGTATTGCAA+AGG | - | Chr1:97826650-97826669 | MsG0180005942.01.T01:CDS | 30.0% |
| AAAGCCAAGTGAAGAGTAAA+AGG | - | Chr1:97825881-97825900 | MsG0180005942.01.T01:CDS | 35.0% | |
| AACTAACCCTTCTATAATGC+AGG | - | Chr1:97826301-97826320 | MsG0180005942.01.T01:intron | 35.0% | |
| AAGCCAAGTGAAGAGTAAAA+GGG | - | Chr1:97825882-97825901 | MsG0180005942.01.T01:CDS | 35.0% | |
| AGCAAACAGAAAACATGCAT+TGG | + | Chr1:97826876-97826895 | None:intergenic | 35.0% | |
| ATAATGCAGGAAGTTGAATG+GGG | - | Chr1:97826314-97826333 | MsG0180005942.01.T01:intron | 35.0% | |
| ATATCATGCATAATTGGAGG+AGG | + | Chr1:97825406-97825425 | None:intergenic | 35.0% | |
| ATTCTTCTACCGTGAAAAAC+AGG | + | Chr1:97825640-97825659 | None:intergenic | 35.0% | |
| ATTGTTGAGAAGTTGAAGAG+TGG | + | Chr1:97826437-97826456 | None:intergenic | 35.0% | |
| CAAAATTGTCCAGTCAAACA+AGG | - | Chr1:97826155-97826174 | MsG0180005942.01.T01:intron | 35.0% | |
| CAACTTCCTGCATTATAGAA+GGG | + | Chr1:97826310-97826329 | None:intergenic | 35.0% | |
| CTATAATGCAGGAAGTTGAA+TGG | - | Chr1:97826312-97826331 | MsG0180005942.01.T01:intron | 35.0% | |
| CTGATATGAGAACAAATCGT+TGG | + | Chr1:97826403-97826422 | None:intergenic | 35.0% | |
| GTTAGAATAAAGTTTGGGGA+AGG | - | Chr1:97826710-97826729 | MsG0180005942.01.T01:CDS | 35.0% | |
| TCAACTTCCTGCATTATAGA+AGG | + | Chr1:97826311-97826330 | None:intergenic | 35.0% | |
| TCAGATCTCAAAAAATGAGC+TGG | + | Chr1:97826788-97826807 | None:intergenic | 35.0% | |
| TCCATATCATGCATAATTGG+AGG | + | Chr1:97825409-97825428 | None:intergenic | 35.0% | |
| TCCTCCAATTATGCATGATA+TGG | - | Chr1:97825405-97825424 | MsG0180005942.01.T01:CDS | 35.0% | |
| TCTGTCCATTTCAAACCATT+GGG | + | Chr1:97826588-97826607 | None:intergenic | 35.0% | |
| TGAACATTACTTGCCAACTT+TGG | - | Chr1:97826688-97826707 | MsG0180005942.01.T01:CDS | 35.0% | |
| TGTTCAAACTGCATAACCTT+AGG | + | Chr1:97826944-97826963 | None:intergenic | 35.0% | |
| TTGAAAAACTGTTCCCACAA+AGG | + | Chr1:97825547-97825566 | None:intergenic | 35.0% | |
| TTGGGGAAGGAAATTCAAAT+AGG | - | Chr1:97826723-97826742 | MsG0180005942.01.T01:CDS | 35.0% | |
| ! | AAGAGCTTTGACAAAGTACT+AGG | + | Chr1:97826911-97826930 | None:intergenic | 35.0% |
| ! | ACTTTAAGTCCTTGTTTGAC+TGG | + | Chr1:97826167-97826186 | None:intergenic | 35.0% |
| ! | ATGCATGTTTTCTGTTTGCT+AGG | - | Chr1:97826876-97826895 | MsG0180005942.01.T01:CDS | 35.0% |
| ! | TCTCACCTATCTCCTAATTT+TGG | - | Chr1:97825216-97825235 | MsG0180005942.01.T01:CDS | 35.0% |
| !! | CAGTTTTTCAAAGGACATGA+AGG | - | Chr1:97825556-97825575 | MsG0180005942.01.T01:CDS | 35.0% |
| !! | GCATTCATGTTTTTGACAAG+GGG | - | Chr1:97825505-97825524 | MsG0180005942.01.T01:CDS | 35.0% |
| !! | TTGTGGGAACAGTTTTTCAA+AGG | - | Chr1:97825547-97825566 | MsG0180005942.01.T01:CDS | 35.0% |
| !!! | ACTTTTGGAACTCGTTCAAA+AGG | + | Chr1:97825484-97825503 | None:intergenic | 35.0% |
| !!! | CTTTTGGAACTCGTTCAAAA+GGG | + | Chr1:97825483-97825502 | None:intergenic | 35.0% |
| AAGAGACTAACTGACCTTAC+TGG | + | Chr1:97825665-97825684 | None:intergenic | 40.0% | |
| ACAAGAACGTGTAGGATTGA+AGG | - | Chr1:97825369-97825388 | MsG0180005942.01.T01:CDS | 40.0% | |
| AGAGACTAACTGACCTTACT+GGG | + | Chr1:97825664-97825683 | None:intergenic | 40.0% | |
| AGCCAAGTGAAGAGTAAAAG+GGG | - | Chr1:97825883-97825902 | MsG0180005942.01.T01:CDS | 40.0% | |
| AGTAAAAGGGGAAAGGGAAA+CGG | - | Chr1:97825895-97825914 | MsG0180005942.01.T01:CDS | 40.0% | |
| AGTGAAGAGTAAAAGGGGAA+AGG | - | Chr1:97825888-97825907 | MsG0180005942.01.T01:CDS | 40.0% | |
| CTCAAAAAATGAGCTGGATG+TGG | + | Chr1:97826782-97826801 | None:intergenic | 40.0% | |
| CTCTGTCCATTTCAAACCAT+TGG | + | Chr1:97826589-97826608 | None:intergenic | 40.0% | |
| GGGTGTGATCCATTATAAGA+AGG | + | Chr1:97825610-97825629 | None:intergenic | 40.0% | |
| GGTGACAAATGTTGTGTTCT+TGG | + | Chr1:97825334-97825353 | None:intergenic | 40.0% | |
| GTCTTATGATGATCCTAGCT+CGG | - | Chr1:97826496-97826515 | MsG0180005942.01.T01:CDS | 40.0% | |
| GTGAAGAGTAAAAGGGGAAA+GGG | - | Chr1:97825889-97825908 | MsG0180005942.01.T01:CDS | 40.0% | |
| ! | TTCCCCTTTTACTCTTCACT+TGG | + | Chr1:97825888-97825907 | None:intergenic | 40.0% |
| !!! | TGTGTTTTTGGCACCTTTGT+GGG | - | Chr1:97825531-97825550 | MsG0180005942.01.T01:CDS | 40.0% |
| AATGGAGAAAAGGGTCCCAA+TGG | - | Chr1:97826570-97826589 | MsG0180005942.01.T01:CDS | 45.0% | |
| AGGGTCCCAATGGTTTGAAA+TGG | - | Chr1:97826580-97826599 | MsG0180005942.01.T01:CDS | 45.0% | |
| CCCTCAACGAATGGAGAAAA+GGG | - | Chr1:97826561-97826580 | MsG0180005942.01.T01:CDS | 45.0% | |
| CGGTAGAAGAATTCCCAGTA+AGG | - | Chr1:97825648-97825667 | MsG0180005942.01.T01:CDS | 45.0% | |
| CGTGAAAAACAGGACTCTCA+GGG | + | Chr1:97825630-97825649 | None:intergenic | 45.0% | |
| GAAGTTGAAGAGTGGTATGC+AGG | + | Chr1:97826429-97826448 | None:intergenic | 45.0% | |
| GCTCTTGAAGATTGCACCTA+AGG | - | Chr1:97826925-97826944 | MsG0180005942.01.T01:CDS | 45.0% | |
| TAGCATCCAAATGTTACCCG+AGG | - | Chr1:97826535-97826554 | MsG0180005942.01.T01:CDS | 45.0% | |
| TATGATGATCCTAGCTCGGT+CGG | - | Chr1:97826500-97826519 | MsG0180005942.01.T01:CDS | 45.0% | |
| TCCCTCAACGAATGGAGAAA+AGG | - | Chr1:97826560-97826579 | MsG0180005942.01.T01:CDS | 45.0% | |
| TGCAGTTTGAACACTACGAC+AGG | - | Chr1:97826951-97826970 | MsG0180005942.01.T01:CDS | 45.0% | |
| ! | ACCCTTTTCTCCATTCGTTG+AGG | + | Chr1:97826565-97826584 | None:intergenic | 45.0% |
| ! | ATGGACAGAGAACTTGCTCT+AGG | - | Chr1:97826599-97826618 | MsG0180005942.01.T01:CDS | 45.0% |
| ! | CCCTTTTCTCCATTCGTTGA+GGG | + | Chr1:97826564-97826583 | None:intergenic | 45.0% |
| ! | CGAGAAGTGCATTTGATAGC+AGG | + | Chr1:97826370-97826389 | None:intergenic | 45.0% |
| ! | CGTTCTTGTTTCACCGCAAT+CGG | + | Chr1:97825358-97825377 | None:intergenic | 45.0% |
| !! | CCTGAGAGTCCTGTTTTTCA+CGG | - | Chr1:97825628-97825647 | MsG0180005942.01.T01:CDS | 45.0% |
| !!! | CTGTGTTTTTGGCACCTTTG+TGG | - | Chr1:97825530-97825549 | MsG0180005942.01.T01:CDS | 45.0% |
| !! | AAATTAAAATGTAAATATAT+TGG | + | Chr1:97825708-97825727 | None:intergenic | 5.0% |
| !!! | TATATTTACATTTTAATTTT+TGG | - | Chr1:97825709-97825728 | MsG0180005942.01.T01:CDS | 5.0% |
| CATTCGTTGAGGGAAACCTC+GGG | + | Chr1:97826554-97826573 | None:intergenic | 50.0% | |
| CCATTCGTTGAGGGAAACCT+CGG | + | Chr1:97826555-97826574 | None:intergenic | 50.0% | |
| CCGTGAAAAACAGGACTCTC+AGG | + | Chr1:97825631-97825650 | None:intergenic | 50.0% | |
| GCGGTGAAACAAGAACGTGT+AGG | - | Chr1:97825361-97825380 | MsG0180005942.01.T01:CDS | 50.0% | |
| GGGAAACCTCGGGTAACATT+TGG | + | Chr1:97826544-97826563 | None:intergenic | 50.0% | |
| ! | ACATTTGTCACCGCCGATTG+CGG | - | Chr1:97825342-97825361 | MsG0180005942.01.T01:CDS | 50.0% |
| ! | TCTTGTTTCACCGCAATCGG+CGG | + | Chr1:97825355-97825374 | None:intergenic | 50.0% |
| !! | ACTTGGGTTGACTGGTCAAG+GGG | - | Chr1:97826752-97826771 | MsG0180005942.01.T01:CDS | 50.0% |
| !! | GACTTGGGTTGACTGGTCAA+GGG | - | Chr1:97826751-97826770 | MsG0180005942.01.T01:CDS | 50.0% |
| !! | GGACTTTGACTTGGGTTGAC+TGG | - | Chr1:97826744-97826763 | MsG0180005942.01.T01:CDS | 50.0% |
| !! | TGACTTGGGTTGACTGGTCA+AGG | - | Chr1:97826750-97826769 | MsG0180005942.01.T01:CDS | 50.0% |
| !!! | GACAAGGGGTGCTGTGTTTT+TGG | - | Chr1:97825519-97825538 | MsG0180005942.01.T01:CDS | 50.0% |
| CCGAGGTTTCCCTCAACGAA+TGG | - | Chr1:97826552-97826571 | MsG0180005942.01.T01:CDS | 55.0% | |
| ! | TGGGTTGACTGGTCAAGGGG+TGG | - | Chr1:97826755-97826774 | MsG0180005942.01.T01:CDS | 60.0% |
| GATCCTAGCTCGGTCGGTCG+TGG | - | Chr1:97826506-97826525 | MsG0180005942.01.T01:CDS | 65.0% | |
| CGACCACGACCGACCGAGCT+AGG | + | Chr1:97826512-97826531 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr1 | gene | 97825139 | 97827015 | 97825139 | ID=MsG0180005942.01;Name=MsG0180005942.01 |
| Chr1 | mRNA | 97825139 | 97827015 | 97825139 | ID=MsG0180005942.01.T01;Parent=MsG0180005942.01;Name=MsG0180005942.01.T01;_AED=0.46;_eAED=0.46;_QI=0|0|0|1|1|1|2|0|434 |
| Chr1 | exon | 97826490 | 97827015 | 97826490 | ID=MsG0180005942.01.T01:exon:10904;Parent=MsG0180005942.01.T01 |
| Chr1 | exon | 97825139 | 97825917 | 97825139 | ID=MsG0180005942.01.T01:exon:10903;Parent=MsG0180005942.01.T01 |
| Chr1 | CDS | 97826490 | 97827015 | 97826490 | ID=MsG0180005942.01.T01:cds;Parent=MsG0180005942.01.T01 |
| Chr1 | CDS | 97825139 | 97825917 | 97825139 | ID=MsG0180005942.01.T01:cds;Parent=MsG0180005942.01.T01 |
| Gene Sequence |
| Protein sequence |
