Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580027227.01.T01 | PNX96281.1 | 77.234 | 470 | 61 | 4 | 1 | 469 | 1 | 425 | 0 | 733 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580027227.01.T01 | A0A2K3MZQ6 | 77.234 | 470 | 61 | 4 | 1 | 469 | 1 | 425 | 0.0 | 733 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048967.01 | MsG0580027227.01 | 0.802917 | 4.468143e-49 | 2.215618e-46 |
| MsG0180000019.01 | MsG0580027227.01 | 0.886236 | 4.077241e-72 | 2.888878e-68 |
| MsG0180000222.01 | MsG0580027227.01 | 0.846780 | 1.751699e-59 | 3.048670e-56 |
| MsG0180001050.01 | MsG0580027227.01 | 0.898324 | 5.930231e-77 | 6.974249e-73 |
| MsG0180001053.01 | MsG0580027227.01 | 0.860599 | 1.846250e-63 | 5.074828e-60 |
| MsG0180003240.01 | MsG0580027227.01 | 0.843767 | 1.144513e-58 | 1.809174e-55 |
| MsG0180003241.01 | MsG0580027227.01 | 0.818614 | 1.788316e-52 | 1.345046e-49 |
| MsG0180004562.01 | MsG0580027227.01 | 0.860069 | 2.670584e-63 | 7.208971e-60 |
| MsG0180005942.01 | MsG0580027227.01 | 0.825949 | 3.546658e-54 | 3.280291e-51 |
| MsG0180005996.01 | MsG0580027227.01 | 0.836648 | 8.274931e-57 | 1.049282e-53 |
| MsG0180006012.01 | MsG0580027227.01 | 0.822321 | 2.522381e-53 | 2.104246e-50 |
| MsG0280006433.01 | MsG0580027227.01 | 0.801016 | 1.098673e-48 | 5.191612e-46 |
| MsG0280011041.01 | MsG0580027227.01 | 0.886944 | 2.199631e-72 | 1.603476e-68 |
| MsG0280011042.01 | MsG0580027227.01 | 0.820670 | 6.066630e-53 | 4.830885e-50 |
| MsG0280011053.01 | MsG0580027227.01 | 0.856463 | 3.162503e-62 | 7.555105e-59 |
| MsG0280011152.01 | MsG0580027227.01 | 0.882420 | 1.057541e-70 | 6.436800e-67 |
| MsG0280011288.01 | MsG0580027227.01 | 0.805819 | 1.110273e-49 | 5.931938e-47 |
| MsG0280011349.01 | MsG0580027227.01 | 0.852484 | 4.477846e-61 | 9.370346e-58 |
| MsG0280011350.01 | MsG0580027227.01 | 0.805733 | 1.157399e-49 | 6.170386e-47 |
| MsG0280011473.01 | MsG0580027227.01 | 0.866151 | 3.515527e-65 | 1.172977e-61 |
| MsG0380011613.01 | MsG0580027227.01 | 0.836200 | 1.075717e-56 | 1.346238e-53 |
| MsG0380013458.01 | MsG0580027227.01 | 0.801747 | 7.782689e-49 | 3.745773e-46 |
| MsG0380014680.01 | MsG0580027227.01 | 0.800061 | 1.719793e-48 | 7.931571e-46 |
| MsG0380014920.01 | MsG0580027227.01 | 0.877243 | 7.345217e-69 | 3.667632e-65 |
| MsG0480018500.01 | MsG0580027227.01 | 0.886853 | 2.381849e-72 | 1.729890e-68 |
| MsG0480018904.01 | MsG0580027227.01 | 0.833012 | 6.810269e-56 | 7.743824e-53 |
| MsG0480019880.01 | MsG0580027227.01 | 0.813866 | 2.060444e-51 | 1.361251e-48 |
| MsG0480020428.01 | MsG0580027227.01 | 0.815434 | 9.261953e-52 | 6.385111e-49 |
| MsG0480020444.01 | MsG0580027227.01 | 0.809558 | 1.783401e-50 | 1.050437e-47 |
| MsG0480021135.01 | MsG0580027227.01 | 0.866621 | 2.494683e-65 | 8.462971e-62 |
| MsG0480022125.01 | MsG0580027227.01 | 0.842041 | 3.294377e-58 | 4.932590e-55 |
| MsG0480022156.01 | MsG0580027227.01 | 0.811708 | 6.114639e-51 | 3.811966e-48 |
| MsG0480022520.01 | MsG0580027227.01 | 0.817133 | 3.862039e-52 | 2.789128e-49 |
| MsG0480022760.01 | MsG0580027227.01 | 0.850451 | 1.684235e-60 | 3.300652e-57 |
| MsG0580024154.01 | MsG0580027227.01 | 0.838704 | 2.455044e-57 | 3.315323e-54 |
| MsG0580024415.01 | MsG0580027227.01 | 0.813144 | 2.969967e-51 | 1.923931e-48 |
| MsG0580024871.01 | MsG0580027227.01 | 0.809061 | 2.279121e-50 | 1.324724e-47 |
| MsG0580024999.01 | MsG0580027227.01 | 0.810338 | 1.211427e-50 | 7.282728e-48 |
| MsG0580025860.01 | MsG0580027227.01 | 0.817409 | 3.348177e-52 | 2.436406e-49 |
| MsG0580025876.01 | MsG0580027227.01 | 0.835512 | 1.607470e-56 | 1.970025e-53 |
| MsG0380015488.01 | MsG0580027227.01 | 0.817916 | 2.573122e-52 | 1.898590e-49 |
| MsG0380015489.01 | MsG0580027227.01 | 0.805878 | 1.079099e-49 | 5.773936e-47 |
| MsG0380016020.01 | MsG0580027227.01 | 0.814933 | 1.196718e-51 | 8.137631e-49 |
| MsG0380016345.01 | MsG0580027227.01 | 0.815914 | 7.242967e-52 | 5.058941e-49 |
| MsG0380016644.01 | MsG0580027227.01 | 0.805904 | 1.065442e-49 | 5.704777e-47 |
| MsG0380016705.01 | MsG0580027227.01 | 0.809255 | 2.071566e-50 | 1.210353e-47 |
| MsG0380017020.01 | MsG0580027227.01 | 0.877560 | 5.698218e-69 | 2.877371e-65 |
| MsG0580027073.01 | MsG0580027227.01 | 0.923823 | 1.597633e-89 | 6.531450e-85 |
| MsG0580027227.01 | MsG0580028355.01 | 0.830411 | 2.982029e-55 | 3.139350e-52 |
| MsG0580027227.01 | MsG0580028416.01 | 0.829694 | 4.460722e-55 | 4.600062e-52 |
| MsG0580027227.01 | MsG0580028560.01 | 0.863706 | 2.056041e-64 | 6.292670e-61 |
| MsG0580027227.01 | MsG0580028999.01 | 0.821891 | 3.172664e-53 | 2.614447e-50 |
| MsG0580027227.01 | MsG0580029412.01 | 0.815708 | 8.050177e-52 | 5.591678e-49 |
| MsG0580027227.01 | MsG0580029798.01 | 0.802706 | 4.939048e-49 | 2.436036e-46 |
| MsG0580027227.01 | MsG0580029901.01 | 0.844163 | 8.959779e-59 | 1.434073e-55 |
| MsG0580027227.01 | MsG0580029906.01 | 0.833852 | 4.202922e-56 | 4.901123e-53 |
| MsG0580027227.01 | MsG0580029930.01 | 0.804437 | 2.161013e-49 | 1.114177e-46 |
| MsG0580027227.01 | MsG0680031429.01 | 0.824753 | 6.804655e-54 | 6.082854e-51 |
| MsG0580027227.01 | MsG0780037258.01 | 0.819435 | 1.163114e-52 | 8.949795e-50 |
| MsG0580027227.01 | MsG0780038123.01 | 0.851591 | 8.031440e-61 | 1.633574e-57 |
| MsG0580027227.01 | MsG0780038135.01 | 0.807722 | 4.398404e-50 | 2.468064e-47 |
| MsG0580027227.01 | MsG0780038515.01 | 0.808351 | 3.232954e-50 | 1.844356e-47 |
| MsG0580027227.01 | MsG0780039334.01 | 0.885250 | 9.563064e-72 | 6.516251e-68 |
| MsG0580027227.01 | MsG0780039450.01 | 0.806132 | 9.543006e-50 | 5.139428e-47 |
| MsG0580027227.01 | MsG0780039472.01 | 0.816552 | 5.213709e-52 | 3.705757e-49 |
| MsG0580027227.01 | MsG0780039877.01 | 0.847715 | 9.700701e-60 | 1.739645e-56 |
| MsG0580027227.01 | MsG0780040144.01 | 0.828344 | 9.471969e-55 | 9.388590e-52 |
| MsG0580027227.01 | MsG0780041380.01 | 0.834075 | 3.695522e-56 | 4.337842e-53 |
| MsG0580027227.01 | MsG0780041646.01 | 0.828649 | 7.992657e-55 | 7.993474e-52 |
| MsG0580027227.01 | MsG0880041985.01 | 0.842744 | 2.144299e-58 | 3.282156e-55 |
| MsG0580027227.01 | MsG0880042320.01 | 0.811462 | 6.917146e-51 | 4.284528e-48 |
| MsG0580027227.01 | MsG0880042368.01 | 0.807000 | 6.259856e-50 | 3.447088e-47 |
| MsG0580027227.01 | MsG0880042843.01 | 0.811240 | 7.728333e-51 | 4.758946e-48 |
| MsG0580027227.01 | MsG0880043286.01 | 0.808249 | 3.398443e-50 | 1.933620e-47 |
| MsG0580027227.01 | MsG0880043685.01 | 0.836691 | 8.066690e-57 | 1.024338e-53 |
| MsG0580027227.01 | MsG0880043715.01 | 0.845032 | 5.230218e-59 | 8.603751e-56 |
| MsG0580027227.01 | MsG0880044305.01 | 0.840692 | 7.459072e-58 | 1.070918e-54 |
| MsG0580027227.01 | MsG0880044669.01 | 0.867962 | 9.295247e-66 | 3.305331e-62 |
| MsG0580027227.01 | MsG0880045277.01 | 0.853375 | 2.491402e-61 | 5.371818e-58 |
| MsG0580027227.01 | MsG0880045441.01 | 0.808037 | 3.770220e-50 | 2.133022e-47 |
| MsG0580027227.01 | MsG0880046642.01 | 0.811564 | 6.573204e-51 | 4.082446e-48 |
| MsG0580027227.01 | MsG0880046975.01 | 0.854778 | 9.809126e-62 | 2.215674e-58 |
| MsG0580027227.01 | MsG0880047081.01 | 0.872082 | 4.180343e-67 | 1.726127e-63 |
| MsG0580027227.01 | MsG0880047491.01 | 0.800898 | 1.161303e-48 | 5.471052e-46 |
| MsG0280007272.01 | MsG0580027227.01 | 0.847048 | 1.479180e-59 | 2.596525e-56 |
| MsG0280007369.01 | MsG0580027227.01 | 0.853041 | 3.105003e-61 | 6.619854e-58 |
| MsG0280007391.01 | MsG0580027227.01 | 0.880701 | 4.419275e-70 | 2.517066e-66 |
| MsG0280007751.01 | MsG0580027227.01 | 0.824948 | 6.120780e-54 | 5.501920e-51 |
| MsG0280008117.01 | MsG0580027227.01 | 0.820135 | 8.049075e-53 | 6.316199e-50 |
| MsG0280009394.01 | MsG0580027227.01 | 0.853170 | 2.852753e-61 | 6.107879e-58 |
| MsG0280009838.01 | MsG0580027227.01 | 0.802708 | 4.936100e-49 | 2.434647e-46 |
PPI
| Gene1 | Gene2 | Type |
|---|---|---|
| MsG0580027073.01 | MsG0580027227.01 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580027227.01.T01 | MTR_6g472110 | 97.603 | 292 | 7 | 0 | 178 | 469 | 108 | 399 | 0.0 | 595 |
| MsG0580027227.01.T01 | MTR_6g472110 | 99.065 | 107 | 1 | 0 | 1 | 107 | 1 | 107 | 6.42e-70 | 228 |
| MsG0580027227.01.T01 | MTR_5g035690 | 40.381 | 473 | 191 | 13 | 1 | 469 | 1 | 386 | 2.11e-100 | 306 |
| MsG0580027227.01.T01 | MTR_5g035665 | 49.488 | 293 | 130 | 8 | 178 | 469 | 104 | 379 | 6.53e-84 | 263 |
| MsG0580027227.01.T01 | MTR_5g035665 | 49.600 | 125 | 59 | 1 | 1 | 125 | 1 | 121 | 6.58e-28 | 114 |
| MsG0580027227.01.T01 | MTR_5g035750 | 48.805 | 293 | 132 | 8 | 178 | 469 | 112 | 387 | 7.49e-83 | 261 |
| MsG0580027227.01.T01 | MTR_5g035750 | 46.825 | 126 | 63 | 2 | 1 | 122 | 1 | 126 | 7.30e-26 | 108 |
| MsG0580027227.01.T01 | MTR_5g035760 | 49.320 | 294 | 131 | 9 | 178 | 469 | 103 | 380 | 1.15e-82 | 260 |
| MsG0580027227.01.T01 | MTR_5g035760 | 45.865 | 133 | 65 | 3 | 1 | 131 | 1 | 128 | 8.24e-23 | 100 |
| MsG0580027227.01.T01 | MTR_5g035670 | 47.782 | 293 | 137 | 7 | 178 | 469 | 104 | 381 | 2.45e-78 | 249 |
| MsG0580027227.01.T01 | MTR_5g035670 | 47.287 | 129 | 62 | 2 | 1 | 127 | 1 | 125 | 1.90e-26 | 110 |
| MsG0580027227.01.T01 | MTR_6g016660 | 41.667 | 300 | 159 | 8 | 178 | 469 | 107 | 398 | 6.73e-67 | 220 |
| MsG0580027227.01.T01 | MTR_6g016660 | 44.954 | 109 | 55 | 2 | 1 | 107 | 1 | 106 | 4.77e-20 | 92.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580027227.01.T01 | AT1G13490 | 37.076 | 472 | 204 | 12 | 1 | 469 | 1 | 382 | 6.70e-79 | 251 |
| MsG0580027227.01.T01 | AT1G13530 | 34.820 | 471 | 219 | 11 | 1 | 469 | 1 | 385 | 1.12e-71 | 232 |
| MsG0580027227.01.T01 | AT1G13520 | 41.216 | 296 | 152 | 10 | 179 | 469 | 109 | 387 | 3.87e-58 | 197 |
| MsG0580027227.01.T01 | AT1G13520 | 55.140 | 107 | 48 | 0 | 1 | 107 | 1 | 107 | 5.97e-30 | 120 |
| MsG0580027227.01.T01 | AT1G13480 | 38.983 | 295 | 162 | 8 | 178 | 469 | 108 | 387 | 2.66e-57 | 194 |
| MsG0580027227.01.T01 | AT1G13480 | 56.075 | 107 | 47 | 0 | 1 | 107 | 1 | 107 | 3.12e-30 | 121 |
| MsG0580027227.01.T01 | AT1G13500 | 43.144 | 299 | 145 | 10 | 178 | 469 | 106 | 386 | 4.47e-57 | 194 |
| MsG0580027227.01.T01 | AT1G13500 | 49.138 | 116 | 53 | 2 | 1 | 114 | 1 | 112 | 2.14e-21 | 96.3 |
| MsG0580027227.01.T01 | AT1G13490 | 42.963 | 270 | 134 | 7 | 203 | 469 | 111 | 363 | 2.04e-53 | 183 |
| MsG0580027227.01.T01 | AT1G13490 | 49.074 | 108 | 51 | 1 | 1 | 108 | 1 | 104 | 1.27e-22 | 99.4 |
| MsG0580027227.01.T01 | AT1G13470 | 38.255 | 298 | 155 | 12 | 178 | 469 | 104 | 378 | 4.60e-50 | 175 |
| MsG0580027227.01.T01 | AT1G13470 | 55.556 | 108 | 42 | 3 | 1 | 107 | 1 | 103 | 9.45e-26 | 108 |
| MsG0580027227.01.T01 | AT1G13540 | 40.067 | 297 | 149 | 13 | 178 | 469 | 109 | 381 | 1.15e-49 | 174 |
| MsG0580027227.01.T01 | AT1G13540 | 47.748 | 111 | 51 | 3 | 1 | 107 | 1 | 108 | 1.25e-22 | 99.8 |
| MsG0580027227.01.T01 | AT1G61600 | 36.709 | 316 | 163 | 9 | 183 | 469 | 114 | 421 | 3.60e-49 | 174 |
| MsG0580027227.01.T01 | AT1G61600 | 46.789 | 109 | 55 | 2 | 1 | 107 | 1 | 108 | 6.96e-21 | 95.1 |
| MsG0580027227.01.T01 | AT1G13510 | 39.542 | 306 | 158 | 11 | 168 | 469 | 98 | 380 | 4.52e-49 | 172 |
| MsG0580027227.01.T01 | AT1G13510 | 48.649 | 111 | 49 | 4 | 1 | 107 | 1 | 107 | 4.39e-20 | 92.4 |
| MsG0580027227.01.T01 | AT1G13550 | 34.237 | 295 | 167 | 8 | 181 | 466 | 109 | 385 | 8.95e-39 | 145 |
| MsG0580027227.01.T01 | AT1G13550 | 55.340 | 103 | 45 | 1 | 1 | 103 | 1 | 102 | 7.53e-26 | 109 |
Find 100 sgRNAs with CRISPR-Local
Find 143 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTACCAAAACACCAGAATT+AGG | 0.174233 | 5:+56674279 | None:intergenic |
| TGATAATAATGATGGTAAAA+AGG | 0.194360 | 5:-56672904 | MsG0580027227.01.T01:CDS |
| AGAATTTGAAGGGACTAATA+AGG | 0.248217 | 5:-56672637 | MsG0580027227.01.T01:CDS |
| TCAAACACCATCATCAATTA+AGG | 0.264161 | 5:-56672530 | MsG0580027227.01.T01:CDS |
| TTGAAACCAACCTCTTGTTT+TGG | 0.298830 | 5:-56674243 | MsG0580027227.01.T01:CDS |
| AGGCCCTAATTCTGGTGTTT+TGG | 0.301149 | 5:-56674283 | MsG0580027227.01.T01:CDS |
| GTTATAGAGAAATTGAATTC+TGG | 0.308679 | 5:+56673080 | None:intergenic |
| CCAAGACTTGAATCACTTGA+TGG | 0.320694 | 5:+56673143 | None:intergenic |
| CCACCAGAAGGCCCTAATTC+TGG | 0.339823 | 5:-56674291 | MsG0580027227.01.T01:CDS |
| TAGAACTCACTGCCACGTTC+AGG | 0.340411 | 5:-56673503 | MsG0580027227.01.T01:CDS |
| AAAGTGTTGTTGTCGGAAAA+TGG | 0.361228 | 5:-56673043 | MsG0580027227.01.T01:CDS |
| CTGATATCTAAAGGATGAAT+TGG | 0.361943 | 5:+56673302 | None:intergenic |
| ACACCAGAATTAGGGCCTTC+TGG | 0.363127 | 5:+56674288 | None:intergenic |
| AGATTACACTAGAGCAGAAA+TGG | 0.366742 | 5:-56672944 | MsG0580027227.01.T01:CDS |
| ATCATCAATTAAGGAGCAAA+TGG | 0.366805 | 5:-56672521 | MsG0580027227.01.T01:CDS |
| CAGGAGAGGGTTGGATGGCT+TGG | 0.376011 | 5:-56672696 | MsG0580027227.01.T01:CDS |
| GGGAGAGTACCATGAAGTTA+AGG | 0.382423 | 5:-56674217 | MsG0580027227.01.T01:CDS |
| GAACAGTGTGGGTTTGAGTA+TGG | 0.387431 | 5:-56672745 | MsG0580027227.01.T01:CDS |
| CCATCAAGTGATTCAAGTCT+TGG | 0.397780 | 5:-56673143 | MsG0580027227.01.T01:CDS |
| GGAGAGTACCATGAAGTTAA+GGG | 0.402330 | 5:-56674216 | MsG0580027227.01.T01:CDS |
| TACTATGTGATACATCTTCA+TGG | 0.407082 | 5:-56674066 | MsG0580027227.01.T01:CDS |
| GCATCGTGCAACAGAGTTAG+AGG | 0.409225 | 5:+56673588 | None:intergenic |
| GTAGAAGCAAAGTTACATTA+AGG | 0.416879 | 5:-56673247 | MsG0580027227.01.T01:CDS |
| TTACCAAAACACCAGAATTA+GGG | 0.422217 | 5:+56674280 | None:intergenic |
| AAAGAAGTGGTTGTAATTGC+TGG | 0.422244 | 5:-56672849 | MsG0580027227.01.T01:CDS |
| CCCTTCATGTTTATCAAAGA+AGG | 0.425664 | 5:-56673014 | MsG0580027227.01.T01:CDS |
| ATTCAAGAATAACTTGTTTG+AGG | 0.429236 | 5:+56674441 | None:intergenic |
| TGAGAGAATGAAGTGGGAGC+AGG | 0.430736 | 5:-56672715 | MsG0580027227.01.T01:CDS |
| GCTAAATCTGTTGCTGAAGA+TGG | 0.430828 | 5:-56673212 | MsG0580027227.01.T01:CDS |
| GGAATTTCAAGTTAAGAAAG+TGG | 0.435170 | 5:-56672661 | MsG0580027227.01.T01:CDS |
| TTTCTAGTATTGTAGCATAA+GGG | 0.435356 | 5:-56673688 | MsG0580027227.01.T01:intron |
| TCACTAAAATTTCGCCATGA+TGG | 0.438940 | 5:-56673633 | MsG0580027227.01.T01:CDS |
| GACAATGGTTGATTAAGAAC+TGG | 0.443586 | 5:+56674099 | None:intergenic |
| AAGGCAAACCCTTAACTTCA+TGG | 0.449187 | 5:+56674208 | None:intergenic |
| AAGAAAGTGGAAGAATTTGA+AGG | 0.451778 | 5:-56672648 | MsG0580027227.01.T01:CDS |
| GAATGAAGTGGGAGCAGGAG+AGG | 0.455395 | 5:-56672710 | MsG0580027227.01.T01:CDS |
| TTTAATAGTATCAATAATGT+TGG | 0.466830 | 5:-56672774 | MsG0580027227.01.T01:CDS |
| ATTTGCTCCTTAATTGATGA+TGG | 0.471685 | 5:+56672523 | None:intergenic |
| AATGAAGTGGGAGCAGGAGA+GGG | 0.474655 | 5:-56672709 | MsG0580027227.01.T01:CDS |
| TGTTCAGAAAGTGTTGTTGT+CGG | 0.482391 | 5:-56673050 | MsG0580027227.01.T01:CDS |
| GACTTCTTGTACAAAGAAAG+AGG | 0.484167 | 5:+56674336 | None:intergenic |
| GAATTTGAAGGGACTAATAA+GGG | 0.485288 | 5:-56672636 | MsG0580027227.01.T01:CDS |
| AGAACTCACTGCCACGTTCA+GGG | 0.487663 | 5:-56673502 | MsG0580027227.01.T01:CDS |
| GAGAGGGTTGGATGGCTTGG+TGG | 0.489813 | 5:-56672693 | MsG0580027227.01.T01:CDS |
| TGCTGGGTGGGAAGCTATGA+TGG | 0.490086 | 5:-56672832 | MsG0580027227.01.T01:CDS |
| TATTTGTCACTGATATCTAA+AGG | 0.492371 | 5:+56673293 | None:intergenic |
| GTAGATGATTCCCTCCGTGC+AGG | 0.493507 | 5:-56673107 | MsG0580027227.01.T01:CDS |
| TCAAGTCTTGGAGAAGCATC+AGG | 0.497137 | 5:-56673131 | MsG0580027227.01.T01:CDS |
| TCCTTCTTTGATAAACATGA+AGG | 0.498261 | 5:+56673013 | None:intergenic |
| CACTAAAATTTCGCCATGAT+GGG | 0.501845 | 5:-56673632 | MsG0580027227.01.T01:CDS |
| ATGTATCACATAGTATTGAT+TGG | 0.509699 | 5:+56674074 | None:intergenic |
| TTTGTTATAAAGAGATTGGA+TGG | 0.511821 | 5:-56672576 | MsG0580027227.01.T01:CDS |
| CATCTTCATGGCAAGAAAAG+AGG | 0.516256 | 5:-56674054 | MsG0580027227.01.T01:CDS |
| GCAGTGAGTTCTAGAACTGT+TGG | 0.522633 | 5:+56673513 | None:intergenic |
| AAGTGGGAGCAGGAGAGGGT+TGG | 0.525230 | 5:-56672705 | MsG0580027227.01.T01:CDS |
| TTGATTAAGAACTGGAATGA+AGG | 0.527942 | 5:+56674107 | None:intergenic |
| TGAATTCTGGTTTCCCTGCA+CGG | 0.528079 | 5:+56673093 | None:intergenic |
| GAATTAGGGCCTTCTGGTGG+AGG | 0.531123 | 5:+56674294 | None:intergenic |
| ATGGCTTGGTGGGAAAGAAA+AGG | 0.534199 | 5:-56672682 | MsG0580027227.01.T01:CDS |
| TCATCAATTAAGGAGCAAAT+GGG | 0.535072 | 5:-56672520 | MsG0580027227.01.T01:CDS |
| AGCAAATGGGAATGAATGTC+TGG | 0.535491 | 5:-56672507 | MsG0580027227.01.T01:exon |
| AGCTATGATGGATAATAAGA+TGG | 0.539308 | 5:-56672820 | MsG0580027227.01.T01:CDS |
| TGTTAGATTTGAATACAAGT+TGG | 0.546909 | 5:-56673550 | MsG0580027227.01.T01:CDS |
| AGAGGGTTGGATGGCTTGGT+GGG | 0.548797 | 5:-56672692 | MsG0580027227.01.T01:CDS |
| TTCTGGTTTCCCTGCACGGA+GGG | 0.554473 | 5:+56673097 | None:intergenic |
| GATTACACTAGAGCAGAAAT+GGG | 0.554813 | 5:-56672943 | MsG0580027227.01.T01:CDS |
| TTTGTACAAGAAGTCTGAAG+AGG | 0.555051 | 5:-56674328 | MsG0580027227.01.T01:CDS |
| GGGAGCAGGAGAGGGTTGGA+TGG | 0.555243 | 5:-56672701 | MsG0580027227.01.T01:CDS |
| GTTGGAGAAAAGAACAGTGT+GGG | 0.558075 | 5:-56672756 | MsG0580027227.01.T01:CDS |
| CCCAACCCAAAACAAGAGGT+TGG | 0.558608 | 5:+56674237 | None:intergenic |
| CTGATCTATAAAACAACTCA+AGG | 0.565365 | 5:+56674169 | None:intergenic |
| ATCTTCATGGCAAGAAAAGA+GGG | 0.569344 | 5:-56674053 | MsG0580027227.01.T01:intron |
| AGTGGTTGTAATTGCTGGGT+GGG | 0.569655 | 5:-56672844 | MsG0580027227.01.T01:CDS |
| TTGAAGGGACTAATAAGGGA+TGG | 0.569939 | 5:-56672632 | MsG0580027227.01.T01:CDS |
| TCATGCACATGTACCCATCA+TGG | 0.571514 | 5:+56673619 | None:intergenic |
| TAACTCAAAGGAGGAAGATG+TGG | 0.576074 | 5:-56673360 | MsG0580027227.01.T01:CDS |
| AGCAAAGTTACATTAAGGAG+TGG | 0.577098 | 5:-56673242 | MsG0580027227.01.T01:CDS |
| AAAATTTGGATGTTATGTGT+TGG | 0.578946 | 5:-56672607 | MsG0580027227.01.T01:CDS |
| AGAAAGTGGAAGAATTTGAA+GGG | 0.580351 | 5:-56672647 | MsG0580027227.01.T01:CDS |
| TAGATGATTCCCTCCGTGCA+GGG | 0.588685 | 5:-56673106 | MsG0580027227.01.T01:CDS |
| CCTTCTTTGATAAACATGAA+GGG | 0.590946 | 5:+56673014 | None:intergenic |
| AACTCTGTTGCACGATGCAG+CGG | 0.598470 | 5:-56673583 | MsG0580027227.01.T01:CDS |
| CTGAAGATGGATACCCTCCA+AGG | 0.601083 | 5:-56673199 | MsG0580027227.01.T01:CDS |
| TATCACATAGTATTGATTGG+AGG | 0.603064 | 5:+56674077 | None:intergenic |
| CAATAGTTGAGAGAATGAAG+TGG | 0.612002 | 5:-56672722 | MsG0580027227.01.T01:CDS |
| GGAAGCATACAATAACTCAA+AGG | 0.617419 | 5:-56673372 | MsG0580027227.01.T01:CDS |
| CTCTCATTACCTCCACCAGA+AGG | 0.619265 | 5:-56674303 | MsG0580027227.01.T01:CDS |
| CTCTCCCAACCCAAAACAAG+AGG | 0.619270 | 5:+56674233 | None:intergenic |
| TAGTATTGATTGGAGGACAA+TGG | 0.623758 | 5:+56674084 | None:intergenic |
| AATAGTTGAGAGAATGAAGT+GGG | 0.629735 | 5:-56672721 | MsG0580027227.01.T01:CDS |
| TGTTGGAGAAAAGAACAGTG+TGG | 0.630693 | 5:-56672757 | MsG0580027227.01.T01:CDS |
| AAGAAGTGGTTGTAATTGCT+GGG | 0.631620 | 5:-56672848 | MsG0580027227.01.T01:CDS |
| TATAGAATATGTATGTGACT+AGG | 0.634027 | 5:-56674359 | MsG0580027227.01.T01:exon |
| AGCATACAATAACTCAAAGG+AGG | 0.645051 | 5:-56673369 | MsG0580027227.01.T01:CDS |
| CCAGAATTAGGGCCTTCTGG+TGG | 0.656141 | 5:+56674291 | None:intergenic |
| AATGTAACTTTGCTTCTACG+AGG | 0.675300 | 5:+56673251 | None:intergenic |
| AAGTGGTTGTAATTGCTGGG+TGG | 0.699538 | 5:-56672845 | MsG0580027227.01.T01:CDS |
| ATTCTGGTTTCCCTGCACGG+AGG | 0.723189 | 5:+56673096 | None:intergenic |
| ATGATGGTGTTTGAAAGCAT+AGG | 0.724364 | 5:+56672539 | None:intergenic |
| TATCTCTATAACCCTGAACG+TGG | 0.734619 | 5:+56673491 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATAATAATTTCTTAACT+TGG | - | Chr5:56672883-56672902 | MsG0580027227.01.T01:CDS | 10.0% |
| !! | AGTATTATACTGATATAATT+TGG | - | Chr5:56673486-56673505 | MsG0580027227.01.T01:CDS | 15.0% |
| !! | TTTAATAGTATCAATAATGT+TGG | - | Chr5:56674121-56674140 | MsG0580027227.01.T01:CDS | 15.0% |
| !! | GATAATAATGATGGTAAAAA+GGG | - | Chr5:56673992-56674011 | MsG0580027227.01.T01:intron | 20.0% |
| !! | TCATGTCAAAAATGTAAAAT+TGG | + | Chr5:56673441-56673460 | None:intergenic | 20.0% |
| !! | TGATAATAATGATGGTAAAA+AGG | - | Chr5:56673991-56674010 | MsG0580027227.01.T01:intron | 20.0% |
| !!! | GACATTAATGTATTTTGATA+AGG | - | Chr5:56673024-56673043 | MsG0580027227.01.T01:CDS | 20.0% |
| !!! | TTTTCATGTGATAATAATGA+TGG | - | Chr5:56673983-56674002 | MsG0580027227.01.T01:intron | 20.0% |
| ! | AAAATTTGGATGTTATGTGT+TGG | - | Chr5:56674288-56674307 | MsG0580027227.01.T01:CDS | 25.0% |
| ! | AATAAGGGATGGAAAAAATT+TGG | - | Chr5:56674274-56674293 | MsG0580027227.01.T01:CDS | 25.0% |
| ! | AGTACTATATAACTGACATT+TGG | + | Chr5:56672941-56672960 | None:intergenic | 25.0% |
| ! | ATGTCAGTTATATAGTACTA+CGG | - | Chr5:56672942-56672961 | MsG0580027227.01.T01:CDS | 25.0% |
| ! | GTTATAGAGAAATTGAATTC+TGG | + | Chr5:56673818-56673837 | None:intergenic | 25.0% |
| ! | TATAGAATATGTATGTGACT+AGG | - | Chr5:56672536-56672555 | MsG0580027227.01.T01:CDS | 25.0% |
| ! | TATTTGTCACTGATATCTAA+AGG | + | Chr5:56673605-56673624 | None:intergenic | 25.0% |
| ! | TGTTAGATTTGAATACAAGT+TGG | - | Chr5:56673345-56673364 | MsG0580027227.01.T01:CDS | 25.0% |
| !! | AATGTAAAATTGGTTCAACA+CGG | + | Chr5:56673431-56673450 | None:intergenic | 25.0% |
| !! | TAAACTTTTCGTCTGTTATT+TGG | + | Chr5:56673094-56673113 | None:intergenic | 25.0% |
| !! | TTTCTAGTATTGTAGCATAA+GGG | - | Chr5:56673207-56673226 | MsG0580027227.01.T01:CDS | 25.0% |
| !! | TTTGTTATAAAGAGATTGGA+TGG | - | Chr5:56674319-56674338 | MsG0580027227.01.T01:CDS | 25.0% |
| !!! | AATTTGGTTTTTCTTCTGTA+GGG | - | Chr5:56673502-56673521 | MsG0580027227.01.T01:CDS | 25.0% |
| !!! | ATGTATCACATAGTATTGAT+TGG | + | Chr5:56672824-56672843 | None:intergenic | 25.0% |
| !!! | ATTCAAGAATAACTTGTTTG+AGG | + | Chr5:56672457-56672476 | None:intergenic | 25.0% |
| !!! | GACTTTTGTTATAAAGAGAT+TGG | - | Chr5:56674315-56674334 | MsG0580027227.01.T01:CDS | 25.0% |
| !!! | TAATTTGGTTTTTCTTCTGT+AGG | - | Chr5:56673501-56673520 | MsG0580027227.01.T01:CDS | 25.0% |
| !!! | TTTTCTAGTATTGTAGCATA+AGG | - | Chr5:56673206-56673225 | MsG0580027227.01.T01:CDS | 25.0% |
| AAGAAAGTGGAAGAATTTGA+AGG | - | Chr5:56674247-56674266 | MsG0580027227.01.T01:CDS | 30.0% | |
| AATACTTGAACATGTCAAGA+AGG | + | Chr5:56673472-56673491 | None:intergenic | 30.0% | |
| AATAGTTGAGAGAATGAAGT+GGG | - | Chr5:56674174-56674193 | MsG0580027227.01.T01:CDS | 30.0% | |
| ACATTGAATTTCGATGACTT+TGG | - | Chr5:56673000-56673019 | MsG0580027227.01.T01:CDS | 30.0% | |
| AGAAAGTGGAAGAATTTGAA+GGG | - | Chr5:56674248-56674267 | MsG0580027227.01.T01:CDS | 30.0% | |
| AGAATTTGAAGGGACTAATA+AGG | - | Chr5:56674258-56674277 | MsG0580027227.01.T01:CDS | 30.0% | |
| ATCATCAATTAAGGAGCAAA+TGG | - | Chr5:56674374-56674393 | MsG0580027227.01.T01:five_prime_UTR | 30.0% | |
| ATTACCAAAACACCAGAATT+AGG | + | Chr5:56672619-56672638 | None:intergenic | 30.0% | |
| ATTTGCTCCTTAATTGATGA+TGG | + | Chr5:56674375-56674394 | None:intergenic | 30.0% | |
| CCTTCTTTGATAAACATGAA+GGG | + | Chr5:56673884-56673903 | None:intergenic | 30.0% | |
| CTGATATCTAAAGGATGAAT+TGG | + | Chr5:56673596-56673615 | None:intergenic | 30.0% | |
| CTGATCTATAAAACAACTCA+AGG | + | Chr5:56672729-56672748 | None:intergenic | 30.0% | |
| GAATTTGAAGGGACTAATAA+GGG | - | Chr5:56674259-56674278 | MsG0580027227.01.T01:CDS | 30.0% | |
| GTAGAAGCAAAGTTACATTA+AGG | - | Chr5:56673648-56673667 | MsG0580027227.01.T01:CDS | 30.0% | |
| TACTATGTGATACATCTTCA+TGG | - | Chr5:56672829-56672848 | MsG0580027227.01.T01:CDS | 30.0% | |
| TCAAACACCATCATCAATTA+AGG | - | Chr5:56674365-56674384 | MsG0580027227.01.T01:exon | 30.0% | |
| TCATCAATTAAGGAGCAAAT+GGG | - | Chr5:56674375-56674394 | MsG0580027227.01.T01:five_prime_UTR | 30.0% | |
| TCCTTCTTTGATAAACATGA+AGG | + | Chr5:56673885-56673904 | None:intergenic | 30.0% | |
| TTACCAAAACACCAGAATTA+GGG | + | Chr5:56672618-56672637 | None:intergenic | 30.0% | |
| TTCTACTTAAAAACCTTGGA+GGG | + | Chr5:56673712-56673731 | None:intergenic | 30.0% | |
| TTGATTAAGAACTGGAATGA+AGG | + | Chr5:56672791-56672810 | None:intergenic | 30.0% | |
| ! | AAATAACGGGGAATATACTT+AGG | - | Chr5:56672975-56672994 | MsG0580027227.01.T01:CDS | 30.0% |
| !! | AGCTATGATGGATAATAAGA+TGG | - | Chr5:56674075-56674094 | MsG0580027227.01.T01:CDS | 30.0% |
| !! | CTTGAGTTGTTTTATAGATC+AGG | - | Chr5:56672727-56672746 | MsG0580027227.01.T01:CDS | 30.0% |
| !! | GGAATTTCAAGTTAAGAAAG+TGG | - | Chr5:56674234-56674253 | MsG0580027227.01.T01:CDS | 30.0% |
| !! | TATCACATAGTATTGATTGG+AGG | + | Chr5:56672821-56672840 | None:intergenic | 30.0% |
| !!! | ATGTAGCTGAAAGTTTTTTG+TGG | - | Chr5:56674098-56674117 | MsG0580027227.01.T01:CDS | 30.0% |
| AAAGAAGTGGTTGTAATTGC+TGG | - | Chr5:56674046-56674065 | MsG0580027227.01.T01:intron | 35.0% | |
| AAGAAGTGGTTGTAATTGCT+GGG | - | Chr5:56674047-56674066 | MsG0580027227.01.T01:intron | 35.0% | |
| AATGTAACTTTGCTTCTACG+AGG | + | Chr5:56673647-56673666 | None:intergenic | 35.0% | |
| AGATTACACTAGAGCAGAAA+TGG | - | Chr5:56673951-56673970 | MsG0580027227.01.T01:intron | 35.0% | |
| AGCAAAGTTACATTAAGGAG+TGG | - | Chr5:56673653-56673672 | MsG0580027227.01.T01:CDS | 35.0% | |
| AGCATACAATAACTCAAAGG+AGG | - | Chr5:56673526-56673545 | MsG0580027227.01.T01:CDS | 35.0% | |
| ATCTTCATGGCAAGAAAAGA+GGG | - | Chr5:56672842-56672861 | MsG0580027227.01.T01:CDS | 35.0% | |
| CAATAGTTGAGAGAATGAAG+TGG | - | Chr5:56674173-56674192 | MsG0580027227.01.T01:CDS | 35.0% | |
| CACCTTCTACTTAAAAACCT+TGG | + | Chr5:56673716-56673735 | None:intergenic | 35.0% | |
| CACTAAAATTTCGCCATGAT+GGG | - | Chr5:56673263-56673282 | MsG0580027227.01.T01:CDS | 35.0% | |
| CCCTTCATGTTTATCAAAGA+AGG | - | Chr5:56673881-56673900 | MsG0580027227.01.T01:intron | 35.0% | |
| CTTCTACTTAAAAACCTTGG+AGG | + | Chr5:56673713-56673732 | None:intergenic | 35.0% | |
| GACAATGGTTGATTAAGAAC+TGG | + | Chr5:56672799-56672818 | None:intergenic | 35.0% | |
| GACTTCTTGTACAAAGAAAG+AGG | + | Chr5:56672562-56672581 | None:intergenic | 35.0% | |
| GATTACACTAGAGCAGAAAT+GGG | - | Chr5:56673952-56673971 | MsG0580027227.01.T01:intron | 35.0% | |
| TCACTAAAATTTCGCCATGA+TGG | - | Chr5:56673262-56673281 | MsG0580027227.01.T01:CDS | 35.0% | |
| TGCTGTTGTTCAAAAAGAAG+TGG | - | Chr5:56674033-56674052 | MsG0580027227.01.T01:intron | 35.0% | |
| TTAAACTCGATCATCAAAGC+AGG | - | Chr5:56673111-56673130 | MsG0580027227.01.T01:CDS | 35.0% | |
| TTATATAGTACTACGGCGTA+AGG | - | Chr5:56672949-56672968 | MsG0580027227.01.T01:CDS | 35.0% | |
| TTTGTACAAGAAGTCTGAAG+AGG | - | Chr5:56672567-56672586 | MsG0580027227.01.T01:CDS | 35.0% | |
| ! | AACTCAAGGTTCATGTTTTG+AGG | + | Chr5:56672715-56672734 | None:intergenic | 35.0% |
| ! | ACTTCAGTGACTTTGAGTTT+CGG | + | Chr5:56673066-56673085 | None:intergenic | 35.0% |
| ! | ATGATGGTGTTTGAAAGCAT+AGG | + | Chr5:56674359-56674378 | None:intergenic | 35.0% |
| ! | GGAAGCATACAATAACTCAA+AGG | - | Chr5:56673523-56673542 | MsG0580027227.01.T01:CDS | 35.0% |
| !! | AAAGTGTTGTTGTCGGAAAA+TGG | - | Chr5:56673852-56673871 | MsG0580027227.01.T01:intron | 35.0% |
| !! | ACTCAAGGTTCATGTTTTGA+GGG | + | Chr5:56672714-56672733 | None:intergenic | 35.0% |
| !! | TAGTATTGATTGGAGGACAA+TGG | + | Chr5:56672814-56672833 | None:intergenic | 35.0% |
| !! | TGTTCAGAAAGTGTTGTTGT+CGG | - | Chr5:56673845-56673864 | MsG0580027227.01.T01:intron | 35.0% |
| !! | TTGAAACCAACCTCTTGTTT+TGG | - | Chr5:56672652-56672671 | MsG0580027227.01.T01:CDS | 35.0% |
| !!! | CAAGGTTTTTAAGTAGAAGG+TGG | - | Chr5:56673714-56673733 | MsG0580027227.01.T01:intron | 35.0% |
| !!! | CTCCAAGGTTTTTAAGTAGA+AGG | - | Chr5:56673711-56673730 | MsG0580027227.01.T01:intron | 35.0% |
| !!! | TGAAACCAACCTCTTGTTTT+GGG | - | Chr5:56672653-56672672 | MsG0580027227.01.T01:CDS | 35.0% |
| AAGGCAAACCCTTAACTTCA+TGG | + | Chr5:56672690-56672709 | None:intergenic | 40.0% | |
| ACGGCGTAAGGTTGAAATAA+CGG | - | Chr5:56672961-56672980 | MsG0580027227.01.T01:CDS | 40.0% | |
| AGCAAATGGGAATGAATGTC+TGG | - | Chr5:56674388-56674407 | MsG0580027227.01.T01:five_prime_UTR | 40.0% | |
| CATCTTCATGGCAAGAAAAG+AGG | - | Chr5:56672841-56672860 | MsG0580027227.01.T01:CDS | 40.0% | |
| CCAAGACTTGAATCACTTGA+TGG | + | Chr5:56673755-56673774 | None:intergenic | 40.0% | |
| CCATCAAGTGATTCAAGTCT+TGG | - | Chr5:56673752-56673771 | MsG0580027227.01.T01:intron | 40.0% | |
| CTTAAGGGCGGAATTAAAGA+TGG | - | Chr5:56673139-56673158 | MsG0580027227.01.T01:CDS | 40.0% | |
| GAAACTCAAAGTCACTGAAG+TGG | - | Chr5:56673065-56673084 | MsG0580027227.01.T01:CDS | 40.0% | |
| GCTAAATCTGTTGCTGAAGA+TGG | - | Chr5:56673683-56673702 | MsG0580027227.01.T01:intron | 40.0% | |
| GTTGGAGAAAAGAACAGTGT+GGG | - | Chr5:56674139-56674158 | MsG0580027227.01.T01:CDS | 40.0% | |
| TAACTCAAAGGAGGAAGATG+TGG | - | Chr5:56673535-56673554 | MsG0580027227.01.T01:CDS | 40.0% | |
| TATCTCTATAACCCTGAACG+TGG | + | Chr5:56673407-56673426 | None:intergenic | 40.0% | |
| TGTTGGAGAAAAGAACAGTG+TGG | - | Chr5:56674138-56674157 | MsG0580027227.01.T01:CDS | 40.0% | |
| TTGAAGGGACTAATAAGGGA+TGG | - | Chr5:56674263-56674282 | MsG0580027227.01.T01:CDS | 40.0% | |
| !! | GGAGAGTACCATGAAGTTAA+GGG | - | Chr5:56672679-56672698 | MsG0580027227.01.T01:CDS | 40.0% |
| !!! | AGGTTCATGTTTTGAGGGAA+AGG | + | Chr5:56672709-56672728 | None:intergenic | 40.0% |
| AAGTGGTTGTAATTGCTGGG+TGG | - | Chr5:56674050-56674069 | MsG0580027227.01.T01:intron | 45.0% | |
| AGTGGTTGTAATTGCTGGGT+GGG | - | Chr5:56674051-56674070 | MsG0580027227.01.T01:intron | 45.0% | |
| ATCAAAGCAGGCGTCACTTA+AGG | - | Chr5:56673123-56673142 | MsG0580027227.01.T01:CDS | 45.0% | |
| CGGCGTAAGGTTGAAATAAC+GGG | - | Chr5:56672962-56672981 | MsG0580027227.01.T01:CDS | 45.0% | |
| GAACAGTGTGGGTTTGAGTA+TGG | - | Chr5:56674150-56674169 | MsG0580027227.01.T01:CDS | 45.0% | |
| GGCGTAAGGTTGAAATAACG+GGG | - | Chr5:56672963-56672982 | MsG0580027227.01.T01:CDS | 45.0% | |
| TCAAAGCAGGCGTCACTTAA+GGG | - | Chr5:56673124-56673143 | MsG0580027227.01.T01:CDS | 45.0% | |
| TCATGCACATGTACCCATCA+TGG | + | Chr5:56673279-56673298 | None:intergenic | 45.0% | |
| ! | AGGCCCTAATTCTGGTGTTT+TGG | - | Chr5:56672612-56672631 | MsG0580027227.01.T01:CDS | 45.0% |
| !! | ATGGCTTGGTGGGAAAGAAA+AGG | - | Chr5:56674213-56674232 | MsG0580027227.01.T01:CDS | 45.0% |
| !! | GCAGTGAGTTCTAGAACTGT+TGG | + | Chr5:56673385-56673404 | None:intergenic | 45.0% |
| !! | GGGAGAGTACCATGAAGTTA+AGG | - | Chr5:56672678-56672697 | MsG0580027227.01.T01:CDS | 45.0% |
| !! | TCAAGTCTTGGAGAAGCATC+AGG | - | Chr5:56673764-56673783 | MsG0580027227.01.T01:intron | 45.0% |
| !! | TGAATTCTGGTTTCCCTGCA+CGG | + | Chr5:56673805-56673824 | None:intergenic | 45.0% |
| !!! | ACCAACCTCTTGTTTTGGGT+TGG | - | Chr5:56672657-56672676 | MsG0580027227.01.T01:CDS | 45.0% |
| !!! | CCAACCTCTTGTTTTGGGTT+GGG | - | Chr5:56672658-56672677 | MsG0580027227.01.T01:CDS | 45.0% |
| AACTCTGTTGCACGATGCAG+CGG | - | Chr5:56673312-56673331 | MsG0580027227.01.T01:CDS | 50.0% | |
| AATGAAGTGGGAGCAGGAGA+GGG | - | Chr5:56674186-56674205 | MsG0580027227.01.T01:CDS | 50.0% | |
| ACACCAGAATTAGGGCCTTC+TGG | + | Chr5:56672610-56672629 | None:intergenic | 50.0% | |
| AGAACTCACTGCCACGTTCA+GGG | - | Chr5:56673393-56673412 | MsG0580027227.01.T01:intron | 50.0% | |
| CCCAACCCAAAACAAGAGGT+TGG | + | Chr5:56672661-56672680 | None:intergenic | 50.0% | |
| CTCTCATTACCTCCACCAGA+AGG | - | Chr5:56672592-56672611 | MsG0580027227.01.T01:CDS | 50.0% | |
| CTCTCCCAACCCAAAACAAG+AGG | + | Chr5:56672665-56672684 | None:intergenic | 50.0% | |
| CTGAAGATGGATACCCTCCA+AGG | - | Chr5:56673696-56673715 | MsG0580027227.01.T01:intron | 50.0% | |
| GCATCGTGCAACAGAGTTAG+AGG | + | Chr5:56673310-56673329 | None:intergenic | 50.0% | |
| TAGAACTCACTGCCACGTTC+AGG | - | Chr5:56673392-56673411 | MsG0580027227.01.T01:intron | 50.0% | |
| TAGATGATTCCCTCCGTGCA+GGG | - | Chr5:56673789-56673808 | MsG0580027227.01.T01:intron | 50.0% | |
| TGAGAGAATGAAGTGGGAGC+AGG | - | Chr5:56674180-56674199 | MsG0580027227.01.T01:CDS | 50.0% | |
| AAGCAGGCGTCACTTAAGGG+CGG | - | Chr5:56673127-56673146 | MsG0580027227.01.T01:CDS | 55.0% | |
| CCACCAGAAGGCCCTAATTC+TGG | - | Chr5:56672604-56672623 | MsG0580027227.01.T01:CDS | 55.0% | |
| CCAGAATTAGGGCCTTCTGG+TGG | + | Chr5:56672607-56672626 | None:intergenic | 55.0% | |
| GAATGAAGTGGGAGCAGGAG+AGG | - | Chr5:56674185-56674204 | MsG0580027227.01.T01:CDS | 55.0% | |
| GAATTAGGGCCTTCTGGTGG+AGG | + | Chr5:56672604-56672623 | None:intergenic | 55.0% | |
| GTAGATGATTCCCTCCGTGC+AGG | - | Chr5:56673788-56673807 | MsG0580027227.01.T01:intron | 55.0% | |
| TGCTGGGTGGGAAGCTATGA+TGG | - | Chr5:56674063-56674082 | MsG0580027227.01.T01:CDS | 55.0% | |
| !! | AGAGGGTTGGATGGCTTGGT+GGG | - | Chr5:56674203-56674222 | MsG0580027227.01.T01:CDS | 55.0% |
| !! | ATTCTGGTTTCCCTGCACGG+AGG | + | Chr5:56673802-56673821 | None:intergenic | 55.0% |
| !! | TTCTGGTTTCCCTGCACGGA+GGG | + | Chr5:56673801-56673820 | None:intergenic | 55.0% |
| AAGTGGGAGCAGGAGAGGGT+TGG | - | Chr5:56674190-56674209 | MsG0580027227.01.T01:CDS | 60.0% | |
| CAGGAGAGGGTTGGATGGCT+TGG | - | Chr5:56674199-56674218 | MsG0580027227.01.T01:CDS | 60.0% | |
| ! | GAGAGGGTTGGATGGCTTGG+TGG | - | Chr5:56674202-56674221 | MsG0580027227.01.T01:CDS | 60.0% |
| GGGAGCAGGAGAGGGTTGGA+TGG | - | Chr5:56674194-56674213 | MsG0580027227.01.T01:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr5 | gene | 56672452 | 56674465 | 56672452 | ID=MsG0580027227.01;Name=MsG0580027227.01 |
| Chr5 | mRNA | 56672452 | 56674465 | 56672452 | ID=MsG0580027227.01.T01;Parent=MsG0580027227.01;Name=MsG0580027227.01.T01;_AED=0.35;_eAED=0.43;_QI=92|0|0.66|1|1|1|3|63|469 |
| Chr5 | exon | 56672452 | 56673394 | 56672452 | ID=MsG0580027227.01.T01:exon:42108;Parent=MsG0580027227.01.T01 |
| Chr5 | exon | 56673486 | 56673695 | 56673486 | ID=MsG0580027227.01.T01:exon:42107;Parent=MsG0580027227.01.T01 |
| Chr5 | exon | 56674054 | 56674465 | 56674054 | ID=MsG0580027227.01.T01:exon:42106;Parent=MsG0580027227.01.T01 |
| Chr5 | five_prime_UTR | 56674374 | 56674465 | 56674374 | ID=MsG0580027227.01.T01:five_prime_utr;Parent=MsG0580027227.01.T01 |
| Chr5 | CDS | 56674054 | 56674373 | 56674054 | ID=MsG0580027227.01.T01:cds;Parent=MsG0580027227.01.T01 |
| Chr5 | CDS | 56673486 | 56673695 | 56673486 | ID=MsG0580027227.01.T01:cds;Parent=MsG0580027227.01.T01 |
| Chr5 | CDS | 56672515 | 56673394 | 56672515 | ID=MsG0580027227.01.T01:cds;Parent=MsG0580027227.01.T01 |
| Chr5 | three_prime_UTR | 56672452 | 56672514 | 56672452 | ID=MsG0580027227.01.T01:three_prime_utr;Parent=MsG0580027227.01.T01 |
| Gene Sequence |
| Protein sequence |
