Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580027073.01.T01 | GAU48520.1 | 78.085 | 470 | 94 | 4 | 1 | 468 | 1 | 463 | 0 | 732 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580027073.01.T01 | A0A2Z6PDI8 | 78.085 | 470 | 94 | 4 | 1 | 468 | 1 | 463 | 0.0 | 732 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180000019.01 | MsG0580027073.01 | 0.885207 | 9.918622e-72 | 6.747338e-68 |
| MsG0180000222.01 | MsG0580027073.01 | 0.828647 | 8.001525e-55 | 8.001837e-52 |
| MsG0180001050.01 | MsG0580027073.01 | 0.878550 | 2.564152e-69 | 1.344643e-65 |
| MsG0180001053.01 | MsG0580027073.01 | 0.846113 | 2.662652e-59 | 4.534860e-56 |
| MsG0180003240.01 | MsG0580027073.01 | 0.834456 | 2.965931e-56 | 3.521897e-53 |
| MsG0180003241.01 | MsG0580027073.01 | 0.831098 | 2.023491e-55 | 2.173798e-52 |
| MsG0180004562.01 | MsG0580027073.01 | 0.841875 | 3.643227e-58 | 5.426863e-55 |
| MsG0180005942.01 | MsG0580027073.01 | 0.814642 | 1.388836e-51 | 9.370510e-49 |
| MsG0180006012.01 | MsG0580027073.01 | 0.823898 | 1.080871e-53 | 9.428784e-51 |
| MsG0280011041.01 | MsG0580027073.01 | 0.849955 | 2.319100e-60 | 4.471625e-57 |
| MsG0280011053.01 | MsG0580027073.01 | 0.840836 | 6.839931e-58 | 9.864115e-55 |
| MsG0280011152.01 | MsG0580027073.01 | 0.862305 | 5.568231e-64 | 1.623035e-60 |
| MsG0280011288.01 | MsG0580027073.01 | 0.809399 | 1.928865e-50 | 1.131360e-47 |
| MsG0280011349.01 | MsG0580027073.01 | 0.844319 | 8.139325e-59 | 1.309061e-55 |
| MsG0280011350.01 | MsG0580027073.01 | 0.804029 | 2.627711e-49 | 1.340719e-46 |
| MsG0280011473.01 | MsG0580027073.01 | 0.874737 | 5.343142e-68 | 2.431856e-64 |
| MsG0380011613.01 | MsG0580027073.01 | 0.823049 | 1.707298e-53 | 1.454076e-50 |
| MsG0380013458.01 | MsG0580027073.01 | 0.813047 | 3.119301e-51 | 2.015434e-48 |
| MsG0380014920.01 | MsG0580027073.01 | 0.853886 | 1.775823e-61 | 3.894793e-58 |
| MsG0480018500.01 | MsG0580027073.01 | 0.859365 | 4.350385e-63 | 1.146176e-59 |
| MsG0480018904.01 | MsG0580027073.01 | 0.848900 | 4.563520e-60 | 8.501863e-57 |
| MsG0480019880.01 | MsG0580027073.01 | 0.818609 | 1.793174e-52 | 1.348521e-49 |
| MsG0480020428.01 | MsG0580027073.01 | 0.827550 | 1.470584e-54 | 1.424268e-51 |
| MsG0480021135.01 | MsG0580027073.01 | 0.862279 | 5.669303e-64 | 1.651085e-60 |
| MsG0480022125.01 | MsG0580027073.01 | 0.810136 | 1.339320e-50 | 8.009446e-48 |
| MsG0480023280.01 | MsG0580027073.01 | 0.812433 | 4.250140e-51 | 2.702157e-48 |
| MsG0580024154.01 | MsG0580027073.01 | 0.839024 | 2.028396e-57 | 2.765796e-54 |
| MsG0580024415.01 | MsG0580027073.01 | 0.816921 | 4.309868e-52 | 3.094550e-49 |
| MsG0580025876.01 | MsG0580027073.01 | 0.803653 | 3.146479e-49 | 1.589885e-46 |
| MsG0380015488.01 | MsG0580027073.01 | 0.809903 | 1.502923e-50 | 8.933549e-48 |
| MsG0380015489.01 | MsG0580027073.01 | 0.807446 | 5.034032e-50 | 2.804503e-47 |
| MsG0380016345.01 | MsG0580027073.01 | 0.818163 | 2.262830e-52 | 1.680979e-49 |
| MsG0380017020.01 | MsG0580027073.01 | 0.881351 | 2.579517e-70 | 1.506138e-66 |
| MsG0380017158.01 | MsG0580027073.01 | 0.800192 | 1.617638e-48 | 7.485083e-46 |
| MsG0580027073.01 | MsG0580027227.01 | 0.923823 | 1.597633e-89 | 6.531450e-85 |
| MsG0580027073.01 | MsG0580028355.01 | 0.848789 | 4.898796e-60 | 9.093491e-57 |
| MsG0580027073.01 | MsG0580028416.01 | 0.820835 | 5.558989e-53 | 4.447512e-50 |
| MsG0580027073.01 | MsG0580028560.01 | 0.863279 | 2.788415e-64 | 8.406989e-61 |
| MsG0580027073.01 | MsG0580028999.01 | 0.823418 | 1.400291e-53 | 1.204901e-50 |
| MsG0580027073.01 | MsG0580029412.01 | 0.829877 | 4.025136e-55 | 4.173145e-52 |
| MsG0580027073.01 | MsG0580029901.01 | 0.804506 | 2.090346e-49 | 1.079640e-46 |
| MsG0580027073.01 | MsG0580029906.01 | 0.810017 | 1.420530e-50 | 8.469343e-48 |
| MsG0580027073.01 | MsG0680035646.01 | 0.817777 | 2.765118e-52 | 2.032571e-49 |
| MsG0580027073.01 | MsG0780037258.01 | 0.841163 | 5.612896e-58 | 8.176746e-55 |
| MsG0580027073.01 | MsG0780038135.01 | 0.809681 | 1.677991e-50 | 9.916102e-48 |
| MsG0580027073.01 | MsG0780038930.01 | 0.800117 | 1.675306e-48 | 7.737250e-46 |
| MsG0580027073.01 | MsG0780039248.01 | 0.818624 | 1.779067e-52 | 1.338474e-49 |
| MsG0580027073.01 | MsG0780039334.01 | 0.880358 | 5.863196e-70 | 3.293394e-66 |
| MsG0580027073.01 | MsG0780039472.01 | 0.825224 | 5.268176e-54 | 4.772799e-51 |
| MsG0580027073.01 | MsG0780039877.01 | 0.827237 | 1.748279e-54 | 1.677966e-51 |
| MsG0580027073.01 | MsG0780041380.01 | 0.816073 | 6.673160e-52 | 4.681702e-49 |
| MsG0580027073.01 | MsG0780041646.01 | 0.816737 | 4.739335e-52 | 3.385746e-49 |
| MsG0580027073.01 | MsG0880041985.01 | 0.837800 | 4.197240e-57 | 5.513677e-54 |
| MsG0580027073.01 | MsG0880042320.01 | 0.828279 | 9.817566e-55 | 9.713131e-52 |
| MsG0580027073.01 | MsG0880042368.01 | 0.812593 | 3.921906e-51 | 2.503829e-48 |
| MsG0580027073.01 | MsG0880042843.01 | 0.813542 | 2.428045e-51 | 1.590155e-48 |
| MsG0580027073.01 | MsG0880043286.01 | 0.818098 | 2.340363e-52 | 1.735397e-49 |
| MsG0580027073.01 | MsG0880043685.01 | 0.839661 | 1.386150e-57 | 1.927294e-54 |
| MsG0580027073.01 | MsG0880043715.01 | 0.807387 | 5.181133e-50 | 2.882052e-47 |
| MsG0580027073.01 | MsG0880044305.01 | 0.831892 | 1.290110e-55 | 1.419193e-52 |
| MsG0580027073.01 | MsG0880044669.01 | 0.847182 | 1.359368e-59 | 2.396499e-56 |
| MsG0580027073.01 | MsG0880045277.01 | 0.821513 | 3.880254e-53 | 3.163253e-50 |
| MsG0580027073.01 | MsG0880045441.01 | 0.805994 | 1.020211e-49 | 5.475310e-47 |
| MsG0580027073.01 | MsG0880046888.01 | 0.820042 | 8.453640e-53 | 6.616429e-50 |
| MsG0580027073.01 | MsG0880046975.01 | 0.839103 | 1.935859e-57 | 2.645923e-54 |
| MsG0580027073.01 | MsG0880047081.01 | 0.855272 | 7.050821e-62 | 1.618864e-58 |
| MsG0280007272.01 | MsG0580027073.01 | 0.836407 | 9.530052e-57 | 1.199834e-53 |
| MsG0280007369.01 | MsG0580027073.01 | 0.869081 | 4.045631e-66 | 1.498369e-62 |
| MsG0280007391.01 | MsG0580027073.01 | 0.876506 | 1.322950e-68 | 6.430877e-65 |
| MsG0280009394.01 | MsG0580027073.01 | 0.844781 | 6.109926e-59 | 9.971709e-56 |
| MsG0280009838.01 | MsG0580027073.01 | 0.816816 | 4.548949e-52 | 3.256851e-49 |
PPI
| Gene1 | Gene2 | Type |
|---|---|---|
| MsG0580027073.01 | MsG0580027227.01 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580027073.01.T01 | MTR_6g472110 | 97.603 | 292 | 7 | 0 | 177 | 468 | 108 | 399 | 0.0 | 595 |
| MsG0580027073.01.T01 | MTR_6g472110 | 99.065 | 107 | 1 | 0 | 1 | 107 | 1 | 107 | 4.30e-70 | 228 |
| MsG0580027073.01.T01 | MTR_5g035690 | 50.000 | 296 | 124 | 11 | 177 | 468 | 111 | 386 | 3.70e-85 | 267 |
| MsG0580027073.01.T01 | MTR_5g035690 | 51.818 | 110 | 50 | 1 | 1 | 107 | 1 | 110 | 3.47e-28 | 115 |
| MsG0580027073.01.T01 | MTR_5g035665 | 49.147 | 293 | 131 | 8 | 177 | 468 | 104 | 379 | 4.20e-83 | 261 |
| MsG0580027073.01.T01 | MTR_5g035665 | 49.600 | 125 | 59 | 1 | 1 | 125 | 1 | 121 | 4.45e-28 | 115 |
| MsG0580027073.01.T01 | MTR_5g035760 | 48.980 | 294 | 132 | 9 | 177 | 468 | 103 | 380 | 1.52e-82 | 260 |
| MsG0580027073.01.T01 | MTR_5g035760 | 51.402 | 107 | 47 | 2 | 1 | 107 | 1 | 102 | 1.31e-22 | 99.8 |
| MsG0580027073.01.T01 | MTR_5g035750 | 48.464 | 293 | 133 | 8 | 177 | 468 | 112 | 387 | 4.05e-82 | 259 |
| MsG0580027073.01.T01 | MTR_5g035750 | 46.825 | 126 | 63 | 2 | 1 | 122 | 1 | 126 | 7.44e-26 | 108 |
| MsG0580027073.01.T01 | MTR_5g035670 | 47.099 | 293 | 139 | 7 | 177 | 468 | 104 | 381 | 2.11e-77 | 246 |
| MsG0580027073.01.T01 | MTR_5g035670 | 41.250 | 160 | 83 | 4 | 1 | 158 | 1 | 151 | 1.29e-26 | 111 |
| MsG0580027073.01.T01 | MTR_6g016660 | 41.333 | 300 | 160 | 8 | 177 | 468 | 107 | 398 | 9.50e-67 | 219 |
| MsG0580027073.01.T01 | MTR_6g016660 | 44.954 | 109 | 55 | 2 | 1 | 107 | 1 | 106 | 4.61e-20 | 92.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580027073.01.T01 | AT1G13490 | 35.244 | 471 | 213 | 11 | 1 | 468 | 1 | 382 | 1.74e-70 | 229 |
| MsG0580027073.01.T01 | AT1G13500 | 43.478 | 299 | 144 | 10 | 177 | 468 | 106 | 386 | 9.90e-58 | 196 |
| MsG0580027073.01.T01 | AT1G13500 | 49.138 | 116 | 53 | 2 | 1 | 114 | 1 | 112 | 1.93e-21 | 96.3 |
| MsG0580027073.01.T01 | AT1G13530 | 42.809 | 299 | 147 | 10 | 175 | 468 | 106 | 385 | 1.38e-57 | 195 |
| MsG0580027073.01.T01 | AT1G13530 | 48.305 | 118 | 61 | 0 | 1 | 118 | 1 | 118 | 5.74e-26 | 109 |
| MsG0580027073.01.T01 | AT1G13520 | 40.339 | 295 | 156 | 9 | 178 | 468 | 109 | 387 | 1.48e-57 | 195 |
| MsG0580027073.01.T01 | AT1G13520 | 55.140 | 107 | 48 | 0 | 1 | 107 | 1 | 107 | 5.24e-30 | 120 |
| MsG0580027073.01.T01 | AT1G13480 | 40.000 | 290 | 155 | 10 | 182 | 468 | 114 | 387 | 2.70e-57 | 194 |
| MsG0580027073.01.T01 | AT1G13480 | 56.075 | 107 | 47 | 0 | 1 | 107 | 1 | 107 | 2.99e-30 | 121 |
| MsG0580027073.01.T01 | AT1G13490 | 43.333 | 270 | 133 | 7 | 202 | 468 | 111 | 363 | 3.71e-54 | 185 |
| MsG0580027073.01.T01 | AT1G13490 | 49.074 | 108 | 51 | 1 | 1 | 108 | 1 | 104 | 1.05e-22 | 99.8 |
| MsG0580027073.01.T01 | AT1G13470 | 40.678 | 295 | 152 | 11 | 177 | 468 | 104 | 378 | 4.14e-50 | 175 |
| MsG0580027073.01.T01 | AT1G13470 | 55.556 | 108 | 42 | 3 | 1 | 107 | 1 | 103 | 8.66e-26 | 108 |
| MsG0580027073.01.T01 | AT1G13540 | 38.384 | 297 | 154 | 11 | 177 | 468 | 109 | 381 | 4.25e-49 | 172 |
| MsG0580027073.01.T01 | AT1G13540 | 47.748 | 111 | 51 | 3 | 1 | 107 | 1 | 108 | 1.24e-22 | 99.8 |
| MsG0580027073.01.T01 | AT1G13510 | 39.216 | 306 | 159 | 11 | 167 | 468 | 98 | 380 | 4.33e-49 | 172 |
| MsG0580027073.01.T01 | AT1G13510 | 48.649 | 111 | 49 | 4 | 1 | 107 | 1 | 107 | 4.74e-20 | 92.0 |
| MsG0580027073.01.T01 | AT1G61600 | 36.392 | 316 | 164 | 9 | 182 | 468 | 114 | 421 | 6.56e-49 | 173 |
| MsG0580027073.01.T01 | AT1G61600 | 46.789 | 109 | 55 | 2 | 1 | 107 | 1 | 108 | 6.97e-21 | 95.1 |
| MsG0580027073.01.T01 | AT1G13550 | 34.576 | 295 | 166 | 8 | 180 | 465 | 109 | 385 | 1.78e-39 | 147 |
| MsG0580027073.01.T01 | AT1G13550 | 55.340 | 103 | 45 | 1 | 1 | 103 | 1 | 102 | 6.90e-26 | 109 |
Find 103 sgRNAs with CRISPR-Local
Find 146 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTACCAAAACACCAGAATT+AGG | 0.174233 | 5:+52760775 | None:intergenic |
| AGAATTTGAAGGGACTAATA+AGG | 0.248217 | 5:-52759152 | MsG0580027073.01.T01:CDS |
| TGATAATGATGATGGTAAAA+AGG | 0.249854 | 5:-52759419 | MsG0580027073.01.T01:CDS |
| TTGAAACCAACATCTTGTTT+TGG | 0.266282 | 5:-52760739 | MsG0580027073.01.T01:CDS |
| TAGCACTCGCTGCCACGTTC+AGG | 0.270699 | 5:-52760018 | MsG0580027073.01.T01:CDS |
| AGGCCCTAATTCTGGTGTTT+TGG | 0.301149 | 5:-52760779 | MsG0580027073.01.T01:CDS |
| CCAAGACTTGAATCACTTGA+TGG | 0.321076 | 5:+52759658 | None:intergenic |
| GCTATGGTGAAATCGAATTC+TGG | 0.330908 | 5:+52759595 | None:intergenic |
| CCACCAGAAGGCCCTAATTC+TGG | 0.339823 | 5:-52760787 | MsG0580027073.01.T01:CDS |
| CTGATATCTAAAGGATGAAT+TGG | 0.361943 | 5:+52759817 | None:intergenic |
| ACACCAGAATTAGGGCCTTC+TGG | 0.363127 | 5:+52760784 | None:intergenic |
| AGATTACACTAGAGCAGAAA+TGG | 0.366742 | 5:-52759459 | MsG0580027073.01.T01:CDS |
| CAGGAGAGGGTTGGATGGCT+TGG | 0.376011 | 5:-52759211 | MsG0580027073.01.T01:CDS |
| GGGAGAGTACCATGAAGTTA+AGG | 0.382423 | 5:-52760713 | MsG0580027073.01.T01:CDS |
| GAGCTGTTAGATTTGAATAC+AGG | 0.383584 | 5:-52760069 | MsG0580027073.01.T01:CDS |
| GAACAGTGTGGGTTTGAGTA+TGG | 0.387431 | 5:-52759260 | MsG0580027073.01.T01:CDS |
| CCATCAAGTGATTCAAGTCT+TGG | 0.389444 | 5:-52759658 | MsG0580027073.01.T01:CDS |
| CCCTTCATGTTTATCAAAGA+AGG | 0.391686 | 5:-52759529 | MsG0580027073.01.T01:CDS |
| AAAGTGTTGTTGTGGGAAAA+TGG | 0.398385 | 5:-52759558 | MsG0580027073.01.T01:CDS |
| GGAGAGTACCATGAAGTTAA+GGG | 0.402330 | 5:-52760712 | MsG0580027073.01.T01:CDS |
| TACTATGTGATACATCTTCA+TGG | 0.407082 | 5:-52760562 | MsG0580027073.01.T01:CDS |
| ATCATCAGTTAAGGAGCAAA+TGG | 0.407106 | 5:-52759036 | MsG0580027073.01.T01:CDS |
| GCATCGTGCAACAGAGTTAG+AGG | 0.409225 | 5:+52760103 | None:intergenic |
| GTAGAAGCAAAGTTACATTA+AGG | 0.416879 | 5:-52759762 | MsG0580027073.01.T01:CDS |
| AGATATCAGTGACAAATATC+AGG | 0.417583 | 5:-52759803 | MsG0580027073.01.T01:CDS |
| TTACCAAAACACCAGAATTA+GGG | 0.422217 | 5:+52760776 | None:intergenic |
| AAAGAAGTGGTTGTAATTGC+TGG | 0.422244 | 5:-52759364 | MsG0580027073.01.T01:CDS |
| ATTCAAGAATAACTTGTTTG+AGG | 0.429236 | 5:+52760937 | None:intergenic |
| TGAGAGAATGAAGTGGGAGC+AGG | 0.430736 | 5:-52759230 | MsG0580027073.01.T01:CDS |
| GCTAAATCTGTTGCTGAAGA+TGG | 0.430828 | 5:-52759727 | MsG0580027073.01.T01:CDS |
| GGAATTTCAAGTTAAGAAAG+TGG | 0.435170 | 5:-52759176 | MsG0580027073.01.T01:CDS |
| GTTAGATTTGAATACAGGTT+GGG | 0.441137 | 5:-52760064 | MsG0580027073.01.T01:CDS |
| TCAAACACCATCATCAGTTA+AGG | 0.444565 | 5:-52759045 | MsG0580027073.01.T01:CDS |
| AAGGCAAACCCTTAACTTCA+TGG | 0.449187 | 5:+52760704 | None:intergenic |
| AAGAAAGTGGAAGAATTTGA+AGG | 0.451778 | 5:-52759163 | MsG0580027073.01.T01:CDS |
| GAATGAAGTGGGAGCAGGAG+AGG | 0.455395 | 5:-52759225 | MsG0580027073.01.T01:CDS |
| TTGCTAGTATTGTAGCATAA+GGG | 0.465776 | 5:-52760200 | MsG0580027073.01.T01:intron |
| TTTAATAGTATCAATAATGT+TGG | 0.466830 | 5:-52759289 | MsG0580027073.01.T01:CDS |
| AGCAAATGGGAATGAATGTC+TGG | 0.470727 | 5:-52759022 | MsG0580027073.01.T01:exon |
| GACAATGGCTGATTAAGAAC+TGG | 0.473764 | 5:+52760595 | None:intergenic |
| ATTTGCTCCTTAACTGATGA+TGG | 0.474106 | 5:+52759038 | None:intergenic |
| AATGAAGTGGGAGCAGGAGA+GGG | 0.474655 | 5:-52759224 | MsG0580027073.01.T01:CDS |
| GAAATCGAATTCTGGTTTCC+CGG | 0.474718 | 5:+52759603 | None:intergenic |
| GACTTCTTGTACAAAGAAAG+AGG | 0.484167 | 5:+52760832 | None:intergenic |
| GAATTTGAAGGGACTAATAA+GGG | 0.485288 | 5:-52759151 | MsG0580027073.01.T01:CDS |
| GAGAGGGTTGGATGGCTTGG+TGG | 0.489813 | 5:-52759208 | MsG0580027073.01.T01:CDS |
| TGCTGGGTGGGAAGCTATGA+TGG | 0.490086 | 5:-52759347 | MsG0580027073.01.T01:CDS |
| AGCACTCGCTGCCACGTTCA+GGG | 0.493623 | 5:-52760017 | MsG0580027073.01.T01:CDS |
| TCAAGTCTTGGAGAAGCATC+AGG | 0.497137 | 5:-52759646 | MsG0580027073.01.T01:CDS |
| TCCTTCTTTGATAAACATGA+AGG | 0.498261 | 5:+52759528 | None:intergenic |
| TTCTGAACATCTGTTTGCTA+TGG | 0.504829 | 5:+52759579 | None:intergenic |
| ATGTATCACATAGTATTGAT+TGG | 0.509699 | 5:+52760570 | None:intergenic |
| TTTGTTATAAAGAGATTGGA+TGG | 0.511821 | 5:-52759091 | MsG0580027073.01.T01:CDS |
| CATCTTCATGGCAAGAAAAG+AGG | 0.516256 | 5:-52760550 | MsG0580027073.01.T01:CDS |
| GTAGATGATTCCCTCCGTGC+CGG | 0.518251 | 5:-52759622 | MsG0580027073.01.T01:CDS |
| AAGTGGGAGCAGGAGAGGGT+TGG | 0.525230 | 5:-52759220 | MsG0580027073.01.T01:CDS |
| GCAGCGAGTGCTAGAACTGT+TGG | 0.525288 | 5:+52760028 | None:intergenic |
| TAGATGATTCCCTCCGTGCC+GGG | 0.526204 | 5:-52759621 | MsG0580027073.01.T01:CDS |
| CTGATTAAGAACTGGAATGA+AGG | 0.530740 | 5:+52760603 | None:intergenic |
| TTCTGGTTTCCCGGCACGGA+GGG | 0.530934 | 5:+52759612 | None:intergenic |
| GAATTAGGGCCTTCTGGTGG+AGG | 0.531123 | 5:+52760790 | None:intergenic |
| CGAATTCTGGTTTCCCGGCA+CGG | 0.531178 | 5:+52759608 | None:intergenic |
| TGTTAGATTTGAATACAGGT+TGG | 0.531448 | 5:-52760065 | MsG0580027073.01.T01:CDS |
| ATGGCTTGGTGGGAAAGAAA+AGG | 0.534199 | 5:-52759197 | MsG0580027073.01.T01:CDS |
| AGCTATGATGGATAATAAGA+TGG | 0.539308 | 5:-52759335 | MsG0580027073.01.T01:CDS |
| TCATCAGTTAAGGAGCAAAT+GGG | 0.542302 | 5:-52759035 | MsG0580027073.01.T01:CDS |
| TATTTGTCACTGATATCTAA+AGG | 0.544278 | 5:+52759808 | None:intergenic |
| AGAGGGTTGGATGGCTTGGT+GGG | 0.548797 | 5:-52759207 | MsG0580027073.01.T01:CDS |
| CCCAACCCAAAACAAGATGT+TGG | 0.552661 | 5:+52760733 | None:intergenic |
| GATTACACTAGAGCAGAAAT+GGG | 0.553713 | 5:-52759458 | MsG0580027073.01.T01:CDS |
| TTTGTACAAGAAGTCTGAAG+AGG | 0.555051 | 5:-52760824 | MsG0580027073.01.T01:CDS |
| GGGAGCAGGAGAGGGTTGGA+TGG | 0.555243 | 5:-52759216 | MsG0580027073.01.T01:CDS |
| GTTGGAGAAAAGAACAGTGT+GGG | 0.558075 | 5:-52759271 | MsG0580027073.01.T01:CDS |
| AACTCATGCACATGTACTCA+TGG | 0.563208 | 5:+52760131 | None:intergenic |
| CTGATCTATAAAACAACTCA+AGG | 0.565365 | 5:+52760665 | None:intergenic |
| ATCTTCATGGCAAGAAAAGA+GGG | 0.569344 | 5:-52760549 | MsG0580027073.01.T01:intron |
| AGTGGTTGTAATTGCTGGGT+GGG | 0.569655 | 5:-52759359 | MsG0580027073.01.T01:CDS |
| TTGAAGGGACTAATAAGGGA+TGG | 0.569939 | 5:-52759147 | MsG0580027073.01.T01:CDS |
| TGTTCAGAAAGTGTTGTTGT+GGG | 0.572278 | 5:-52759565 | MsG0580027073.01.T01:CDS |
| AGCAAAGTTACATTAAGGAG+TGG | 0.577098 | 5:-52759757 | MsG0580027073.01.T01:CDS |
| AAAATTTGGATGTTATGTGT+TGG | 0.578946 | 5:-52759122 | MsG0580027073.01.T01:CDS |
| AGAAAGTGGAAGAATTTGAA+GGG | 0.580351 | 5:-52759162 | MsG0580027073.01.T01:CDS |
| CCTTCTTTGATAAACATGAA+GGG | 0.590946 | 5:+52759529 | None:intergenic |
| AACTCTGTTGCACGATGCAG+CGG | 0.598470 | 5:-52760098 | MsG0580027073.01.T01:CDS |
| CTGAAGATGGATACCCTCCA+AGG | 0.601083 | 5:-52759714 | MsG0580027073.01.T01:CDS |
| TATCACATAGTATTGATTGG+AGG | 0.603064 | 5:+52760573 | None:intergenic |
| CAATAGTTGAGAGAATGAAG+TGG | 0.612002 | 5:-52759237 | MsG0580027073.01.T01:CDS |
| ATGTTCAGAAAGTGTTGTTG+TGG | 0.614049 | 5:-52759566 | MsG0580027073.01.T01:CDS |
| GGAAGCATACAATAACTCAA+AGG | 0.617419 | 5:-52759887 | MsG0580027073.01.T01:CDS |
| CTCTCATTACCTCCACCAGA+AGG | 0.619265 | 5:-52760799 | MsG0580027073.01.T01:CDS |
| AATAGTTGAGAGAATGAAGT+GGG | 0.629735 | 5:-52759236 | MsG0580027073.01.T01:CDS |
| TGTTGGAGAAAAGAACAGTG+TGG | 0.630693 | 5:-52759272 | MsG0580027073.01.T01:CDS |
| AAGAAGTGGTTGTAATTGCT+GGG | 0.631620 | 5:-52759363 | MsG0580027073.01.T01:CDS |
| TATAGAATATGTATGTGACT+AGG | 0.634027 | 5:-52760855 | MsG0580027073.01.T01:exon |
| TAACTCAAAGGAGGAAGACG+TGG | 0.642483 | 5:-52759875 | MsG0580027073.01.T01:CDS |
| AGCATACAATAACTCAAAGG+AGG | 0.645051 | 5:-52759884 | MsG0580027073.01.T01:CDS |
| TAGTATTGATTGGAGGACAA+TGG | 0.649023 | 5:+52760580 | None:intergenic |
| CCAGAATTAGGGCCTTCTGG+TGG | 0.656141 | 5:+52760787 | None:intergenic |
| AATGTAACTTTGCTTCTACG+AGG | 0.675300 | 5:+52759766 | None:intergenic |
| AAGTGGTTGTAATTGCTGGG+TGG | 0.699538 | 5:-52759360 | MsG0580027073.01.T01:CDS |
| TATCTCTATTACCCTGAACG+TGG | 0.706659 | 5:+52760006 | None:intergenic |
| ATTCTGGTTTCCCGGCACGG+AGG | 0.710825 | 5:+52759611 | None:intergenic |
| ATGATGGTGTTTGAAAGCAT+AGG | 0.759923 | 5:+52759054 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATAATAATTTCTTAACT+TGG | - | Chr5:52759371-52759390 | MsG0580027073.01.T01:CDS | 10.0% |
| !! | TCATGTAAAAAATTAAAAAT+TGG | + | Chr5:52759910-52759929 | None:intergenic | 10.0% |
| !! | TTTAATAGTATCAATAATGT+TGG | - | Chr5:52760590-52760609 | MsG0580027073.01.T01:CDS | 15.0% |
| !! | AGTATTATACTGATGTAATT+TGG | - | Chr5:52759955-52759974 | MsG0580027073.01.T01:intron | 20.0% |
| !!! | AATTAAAAATTGGTTCAACA+CGG | + | Chr5:52759900-52759919 | None:intergenic | 20.0% |
| !!! | GACATTAATGTATTTTGATA+AGG | - | Chr5:52759512-52759531 | MsG0580027073.01.T01:CDS | 20.0% |
| !!! | TAAATTTTTCGTCTGTTATT+TGG | + | Chr5:52759582-52759601 | None:intergenic | 20.0% |
| ! | AAAATTTGGATGTTATGTGT+TGG | - | Chr5:52760757-52760776 | MsG0580027073.01.T01:CDS | 25.0% |
| ! | AATAAGGGATGGAAAAAATT+TGG | - | Chr5:52760743-52760762 | MsG0580027073.01.T01:CDS | 25.0% |
| ! | TATAGAATATGTATGTGACT+AGG | - | Chr5:52759024-52759043 | MsG0580027073.01.T01:exon | 25.0% |
| ! | TATTTGTCACTGATATCTAA+AGG | + | Chr5:52760074-52760093 | None:intergenic | 25.0% |
| ! | TGAGAATGAAAAAAATGGAT+AGG | - | Chr5:52760884-52760903 | MsG0580027073.01.T01:five_prime_UTR | 25.0% |
| !! | TTTGTTATAAAGAGATTGGA+TGG | - | Chr5:52760788-52760807 | MsG0580027073.01.T01:CDS | 25.0% |
| !!! | AATTTGGTTTTTCTTCTGTA+GGG | - | Chr5:52759971-52759990 | MsG0580027073.01.T01:intron | 25.0% |
| !!! | ATCCATTTTTTTCATTCTCA+TGG | + | Chr5:52760884-52760903 | None:intergenic | 25.0% |
| !!! | ATGTATCACATAGTATTGAT+TGG | + | Chr5:52759312-52759331 | None:intergenic | 25.0% |
| !!! | ATTCAAGAATAACTTGTTTG+AGG | + | Chr5:52758945-52758964 | None:intergenic | 25.0% |
| !!! | GACTTTTGTTATAAAGAGAT+TGG | - | Chr5:52760784-52760803 | MsG0580027073.01.T01:CDS | 25.0% |
| !!! | GATAATGATGATGGTAAAAA+GGG | - | Chr5:52760461-52760480 | MsG0580027073.01.T01:intron | 25.0% |
| !!! | TAATTTGGTTTTTCTTCTGT+AGG | - | Chr5:52759970-52759989 | MsG0580027073.01.T01:intron | 25.0% |
| !!! | TGATAATGATGATGGTAAAA+AGG | - | Chr5:52760460-52760479 | MsG0580027073.01.T01:intron | 25.0% |
| !!! | TTTTCATGTGATAATGATGA+TGG | - | Chr5:52760452-52760471 | MsG0580027073.01.T01:intron | 25.0% |
| AAGAAAGTGGAAGAATTTGA+AGG | - | Chr5:52760716-52760735 | MsG0580027073.01.T01:CDS | 30.0% | |
| AATAGTTGAGAGAATGAAGT+GGG | - | Chr5:52760643-52760662 | MsG0580027073.01.T01:CDS | 30.0% | |
| ACATTGAATTTCGATGACTT+TGG | - | Chr5:52759488-52759507 | MsG0580027073.01.T01:CDS | 30.0% | |
| AGAAAGTGGAAGAATTTGAA+GGG | - | Chr5:52760717-52760736 | MsG0580027073.01.T01:CDS | 30.0% | |
| AGAATTTGAAGGGACTAATA+AGG | - | Chr5:52760727-52760746 | MsG0580027073.01.T01:CDS | 30.0% | |
| AGATATCAGTGACAAATATC+AGG | - | Chr5:52760076-52760095 | MsG0580027073.01.T01:CDS | 30.0% | |
| ATGTCAGTTATATAGTACCA+CGG | - | Chr5:52759430-52759449 | MsG0580027073.01.T01:CDS | 30.0% | |
| ATTACCAAAACACCAGAATT+AGG | + | Chr5:52759107-52759126 | None:intergenic | 30.0% | |
| CCTTCTTTGATAAACATGAA+GGG | + | Chr5:52760353-52760372 | None:intergenic | 30.0% | |
| CTGATATCTAAAGGATGAAT+TGG | + | Chr5:52760065-52760084 | None:intergenic | 30.0% | |
| CTGATCTATAAAACAACTCA+AGG | + | Chr5:52759217-52759236 | None:intergenic | 30.0% | |
| GAATTTGAAGGGACTAATAA+GGG | - | Chr5:52760728-52760747 | MsG0580027073.01.T01:CDS | 30.0% | |
| GGTACTATATAACTGACATT+TGG | + | Chr5:52759429-52759448 | None:intergenic | 30.0% | |
| GTAGAAGCAAAGTTACATTA+AGG | - | Chr5:52760117-52760136 | MsG0580027073.01.T01:CDS | 30.0% | |
| GTCCATGAGAATGAAAAAAA+TGG | - | Chr5:52760879-52760898 | MsG0580027073.01.T01:five_prime_UTR | 30.0% | |
| GTTAGATTTGAATACAGGTT+GGG | - | Chr5:52759815-52759834 | MsG0580027073.01.T01:CDS | 30.0% | |
| TACTATGTGATACATCTTCA+TGG | - | Chr5:52759317-52759336 | MsG0580027073.01.T01:CDS | 30.0% | |
| TCCTTCTTTGATAAACATGA+AGG | + | Chr5:52760354-52760373 | None:intergenic | 30.0% | |
| TGTTAGATTTGAATACAGGT+TGG | - | Chr5:52759814-52759833 | MsG0580027073.01.T01:CDS | 30.0% | |
| TTACCAAAACACCAGAATTA+GGG | + | Chr5:52759106-52759125 | None:intergenic | 30.0% | |
| TTCTACTTAAAAACCTTGGA+GGG | + | Chr5:52760181-52760200 | None:intergenic | 30.0% | |
| TTGCTAGTATTGTAGCATAA+GGG | - | Chr5:52759679-52759698 | MsG0580027073.01.T01:CDS | 30.0% | |
| TTTGCTAGTATTGTAGCATA+AGG | - | Chr5:52759678-52759697 | MsG0580027073.01.T01:CDS | 30.0% | |
| ! | AAATAACGGGGAATATACTT+AGG | - | Chr5:52759463-52759482 | MsG0580027073.01.T01:CDS | 30.0% |
| !! | AGCTATGATGGATAATAAGA+TGG | - | Chr5:52760544-52760563 | MsG0580027073.01.T01:intron | 30.0% |
| !! | CTTGAGTTGTTTTATAGATC+AGG | - | Chr5:52759215-52759234 | MsG0580027073.01.T01:CDS | 30.0% |
| !! | GGAATTTCAAGTTAAGAAAG+TGG | - | Chr5:52760703-52760722 | MsG0580027073.01.T01:CDS | 30.0% |
| !! | TATCACATAGTATTGATTGG+AGG | + | Chr5:52759309-52759328 | None:intergenic | 30.0% |
| !! | TTGAAACCAACATCTTGTTT+TGG | - | Chr5:52759140-52759159 | MsG0580027073.01.T01:CDS | 30.0% |
| !!! | ATGTAGCTGAAAGTTTTTTG+TGG | - | Chr5:52760567-52760586 | MsG0580027073.01.T01:CDS | 30.0% |
| !!! | TGAAACCAACATCTTGTTTT+GGG | - | Chr5:52759141-52759160 | MsG0580027073.01.T01:CDS | 30.0% |
| AAAGAAGTGGTTGTAATTGC+TGG | - | Chr5:52760515-52760534 | MsG0580027073.01.T01:intron | 35.0% | |
| AAGAAGTGGTTGTAATTGCT+GGG | - | Chr5:52760516-52760535 | MsG0580027073.01.T01:intron | 35.0% | |
| AATGTAACTTTGCTTCTACG+AGG | + | Chr5:52760116-52760135 | None:intergenic | 35.0% | |
| AGATTACACTAGAGCAGAAA+TGG | - | Chr5:52760420-52760439 | MsG0580027073.01.T01:intron | 35.0% | |
| AGCAAAGTTACATTAAGGAG+TGG | - | Chr5:52760122-52760141 | MsG0580027073.01.T01:CDS | 35.0% | |
| AGCATACAATAACTCAAAGG+AGG | - | Chr5:52759995-52760014 | MsG0580027073.01.T01:intron | 35.0% | |
| ATCATCAGTTAAGGAGCAAA+TGG | - | Chr5:52760843-52760862 | MsG0580027073.01.T01:CDS | 35.0% | |
| ATCTTCATGGCAAGAAAAGA+GGG | - | Chr5:52759330-52759349 | MsG0580027073.01.T01:CDS | 35.0% | |
| ATTTGCTCCTTAACTGATGA+TGG | + | Chr5:52760844-52760863 | None:intergenic | 35.0% | |
| CAATAGTTGAGAGAATGAAG+TGG | - | Chr5:52760642-52760661 | MsG0580027073.01.T01:CDS | 35.0% | |
| CACCTTCTACTTAAAAACCT+TGG | + | Chr5:52760185-52760204 | None:intergenic | 35.0% | |
| CCCTTCATGTTTATCAAAGA+AGG | - | Chr5:52760350-52760369 | MsG0580027073.01.T01:intron | 35.0% | |
| CTGATTAAGAACTGGAATGA+AGG | + | Chr5:52759279-52759298 | None:intergenic | 35.0% | |
| CTTCTACTTAAAAACCTTGG+AGG | + | Chr5:52760182-52760201 | None:intergenic | 35.0% | |
| GACTTCTTGTACAAAGAAAG+AGG | + | Chr5:52759050-52759069 | None:intergenic | 35.0% | |
| GAGCTGTTAGATTTGAATAC+AGG | - | Chr5:52759810-52759829 | MsG0580027073.01.T01:CDS | 35.0% | |
| GATTACACTAGAGCAGAAAT+GGG | - | Chr5:52760421-52760440 | MsG0580027073.01.T01:intron | 35.0% | |
| TCAAACACCATCATCAGTTA+AGG | - | Chr5:52760834-52760853 | MsG0580027073.01.T01:CDS | 35.0% | |
| TCATCAGTTAAGGAGCAAAT+GGG | - | Chr5:52760844-52760863 | MsG0580027073.01.T01:CDS | 35.0% | |
| TGCTGTTGTTCAAAAAGAAG+TGG | - | Chr5:52760502-52760521 | MsG0580027073.01.T01:intron | 35.0% | |
| TTTGTACAAGAAGTCTGAAG+AGG | - | Chr5:52759055-52759074 | MsG0580027073.01.T01:CDS | 35.0% | |
| ! | AACTCAAGGTTCATGTTTTG+AGG | + | Chr5:52759203-52759222 | None:intergenic | 35.0% |
| ! | ACTTCAGTGACTTTGAGTTT+CGG | + | Chr5:52759554-52759573 | None:intergenic | 35.0% |
| ! | ATGATGGTGTTTGAAAGCAT+AGG | + | Chr5:52760828-52760847 | None:intergenic | 35.0% |
| ! | GGAAGCATACAATAACTCAA+AGG | - | Chr5:52759992-52760011 | MsG0580027073.01.T01:intron | 35.0% |
| ! | TTCTGAACATCTGTTTGCTA+TGG | + | Chr5:52760303-52760322 | None:intergenic | 35.0% |
| !! | AAAGTGTTGTTGTGGGAAAA+TGG | - | Chr5:52760321-52760340 | MsG0580027073.01.T01:intron | 35.0% |
| !! | ACTCAAGGTTCATGTTTTGA+GGG | + | Chr5:52759202-52759221 | None:intergenic | 35.0% |
| !! | ATGTTCAGAAAGTGTTGTTG+TGG | - | Chr5:52760313-52760332 | MsG0580027073.01.T01:intron | 35.0% |
| !! | TAGTATTGATTGGAGGACAA+TGG | + | Chr5:52759302-52759321 | None:intergenic | 35.0% |
| !! | TGTTCAGAAAGTGTTGTTGT+GGG | - | Chr5:52760314-52760333 | MsG0580027073.01.T01:intron | 35.0% |
| !!! | CAAGGTTTTTAAGTAGAAGG+TGG | - | Chr5:52760183-52760202 | MsG0580027073.01.T01:CDS | 35.0% |
| !!! | CTCCAAGGTTTTTAAGTAGA+AGG | - | Chr5:52760180-52760199 | MsG0580027073.01.T01:CDS | 35.0% |
| AACTCATGCACATGTACTCA+TGG | + | Chr5:52759751-52759770 | None:intergenic | 40.0% | |
| AAGGCAAACCCTTAACTTCA+TGG | + | Chr5:52759178-52759197 | None:intergenic | 40.0% | |
| ACGGCGTAAGGTTGAAATAA+CGG | - | Chr5:52759449-52759468 | MsG0580027073.01.T01:CDS | 40.0% | |
| AGCAAATGGGAATGAATGTC+TGG | - | Chr5:52760857-52760876 | MsG0580027073.01.T01:exon | 40.0% | |
| CATCTTCATGGCAAGAAAAG+AGG | - | Chr5:52759329-52759348 | MsG0580027073.01.T01:CDS | 40.0% | |
| CCAAGACTTGAATCACTTGA+TGG | + | Chr5:52760224-52760243 | None:intergenic | 40.0% | |
| CCATCAAGTGATTCAAGTCT+TGG | - | Chr5:52760221-52760240 | MsG0580027073.01.T01:intron | 40.0% | |
| GAAACTCAAAGTCACTGAAG+TGG | - | Chr5:52759553-52759572 | MsG0580027073.01.T01:CDS | 40.0% | |
| GACAATGGCTGATTAAGAAC+TGG | + | Chr5:52759287-52759306 | None:intergenic | 40.0% | |
| GCTAAATCTGTTGCTGAAGA+TGG | - | Chr5:52760152-52760171 | MsG0580027073.01.T01:CDS | 40.0% | |
| GCTATGGTGAAATCGAATTC+TGG | + | Chr5:52760287-52760306 | None:intergenic | 40.0% | |
| GTTGGAGAAAAGAACAGTGT+GGG | - | Chr5:52760608-52760627 | MsG0580027073.01.T01:CDS | 40.0% | |
| TATCTCTATTACCCTGAACG+TGG | + | Chr5:52759876-52759895 | None:intergenic | 40.0% | |
| TGTTGGAGAAAAGAACAGTG+TGG | - | Chr5:52760607-52760626 | MsG0580027073.01.T01:CDS | 40.0% | |
| TTAAACTCGATCGTCAAAGC+AGG | - | Chr5:52759599-52759618 | MsG0580027073.01.T01:CDS | 40.0% | |
| TTATATAGTACCACGGCGTA+AGG | - | Chr5:52759437-52759456 | MsG0580027073.01.T01:CDS | 40.0% | |
| TTGAAGGGACTAATAAGGGA+TGG | - | Chr5:52760732-52760751 | MsG0580027073.01.T01:CDS | 40.0% | |
| !! | GAAATCGAATTCTGGTTTCC+CGG | + | Chr5:52760279-52760298 | None:intergenic | 40.0% |
| !! | GGAGAGTACCATGAAGTTAA+GGG | - | Chr5:52759167-52759186 | MsG0580027073.01.T01:CDS | 40.0% |
| !!! | ACCAACATCTTGTTTTGGGT+TGG | - | Chr5:52759145-52759164 | MsG0580027073.01.T01:CDS | 40.0% |
| !!! | AGGTTCATGTTTTGAGGGAA+AGG | + | Chr5:52759197-52759216 | None:intergenic | 40.0% |
| !!! | CCAACATCTTGTTTTGGGTT+GGG | - | Chr5:52759146-52759165 | MsG0580027073.01.T01:CDS | 40.0% |
| AAGTGGTTGTAATTGCTGGG+TGG | - | Chr5:52760519-52760538 | MsG0580027073.01.T01:intron | 45.0% | |
| AGTGGTTGTAATTGCTGGGT+GGG | - | Chr5:52760520-52760539 | MsG0580027073.01.T01:intron | 45.0% | |
| CCCAACCCAAAACAAGATGT+TGG | + | Chr5:52759149-52759168 | None:intergenic | 45.0% | |
| CGGCGTAAGGTTGAAATAAC+GGG | - | Chr5:52759450-52759469 | MsG0580027073.01.T01:CDS | 45.0% | |
| GAACAGTGTGGGTTTGAGTA+TGG | - | Chr5:52760619-52760638 | MsG0580027073.01.T01:CDS | 45.0% | |
| GGCGTAAGGTTGAAATAACG+GGG | - | Chr5:52759451-52759470 | MsG0580027073.01.T01:CDS | 45.0% | |
| TAACTCAAAGGAGGAAGACG+TGG | - | Chr5:52760004-52760023 | MsG0580027073.01.T01:CDS | 45.0% | |
| ! | AGGCCCTAATTCTGGTGTTT+TGG | - | Chr5:52759100-52759119 | MsG0580027073.01.T01:CDS | 45.0% |
| ! | GTTATTTCAACCTTACGCCG+TGG | + | Chr5:52759450-52759469 | None:intergenic | 45.0% |
| !! | ATGGCTTGGTGGGAAAGAAA+AGG | - | Chr5:52760682-52760701 | MsG0580027073.01.T01:CDS | 45.0% |
| !! | GGGAGAGTACCATGAAGTTA+AGG | - | Chr5:52759166-52759185 | MsG0580027073.01.T01:CDS | 45.0% |
| !! | TCAAGTCTTGGAGAAGCATC+AGG | - | Chr5:52760233-52760252 | MsG0580027073.01.T01:intron | 45.0% |
| AACTCTGTTGCACGATGCAG+CGG | - | Chr5:52759781-52759800 | MsG0580027073.01.T01:CDS | 50.0% | |
| AATGAAGTGGGAGCAGGAGA+GGG | - | Chr5:52760655-52760674 | MsG0580027073.01.T01:CDS | 50.0% | |
| ACACCAGAATTAGGGCCTTC+TGG | + | Chr5:52759098-52759117 | None:intergenic | 50.0% | |
| CTCTCATTACCTCCACCAGA+AGG | - | Chr5:52759080-52759099 | MsG0580027073.01.T01:CDS | 50.0% | |
| CTGAAGATGGATACCCTCCA+AGG | - | Chr5:52760165-52760184 | MsG0580027073.01.T01:CDS | 50.0% | |
| GCATCGTGCAACAGAGTTAG+AGG | + | Chr5:52759779-52759798 | None:intergenic | 50.0% | |
| GTCAAAGCAGGCGTCACTTA+AGG | - | Chr5:52759611-52759630 | MsG0580027073.01.T01:CDS | 50.0% | |
| TGAGAGAATGAAGTGGGAGC+AGG | - | Chr5:52760649-52760668 | MsG0580027073.01.T01:CDS | 50.0% | |
| CCACCAGAAGGCCCTAATTC+TGG | - | Chr5:52759092-52759111 | MsG0580027073.01.T01:CDS | 55.0% | |
| CCAGAATTAGGGCCTTCTGG+TGG | + | Chr5:52759095-52759114 | None:intergenic | 55.0% | |
| GAATGAAGTGGGAGCAGGAG+AGG | - | Chr5:52760654-52760673 | MsG0580027073.01.T01:CDS | 55.0% | |
| GAATTAGGGCCTTCTGGTGG+AGG | + | Chr5:52759092-52759111 | None:intergenic | 55.0% | |
| GCAGCGAGTGCTAGAACTGT+TGG | + | Chr5:52759854-52759873 | None:intergenic | 55.0% | |
| GTAGATGATTCCCTCCGTGC+CGG | - | Chr5:52760257-52760276 | MsG0580027073.01.T01:intron | 55.0% | |
| TAGATGATTCCCTCCGTGCC+GGG | - | Chr5:52760258-52760277 | MsG0580027073.01.T01:intron | 55.0% | |
| TGCTGGGTGGGAAGCTATGA+TGG | - | Chr5:52760532-52760551 | MsG0580027073.01.T01:intron | 55.0% | |
| !! | AGAGGGTTGGATGGCTTGGT+GGG | - | Chr5:52760672-52760691 | MsG0580027073.01.T01:CDS | 55.0% |
| !! | CGAATTCTGGTTTCCCGGCA+CGG | + | Chr5:52760274-52760293 | None:intergenic | 55.0% |
| AAGTGGGAGCAGGAGAGGGT+TGG | - | Chr5:52760659-52760678 | MsG0580027073.01.T01:CDS | 60.0% | |
| AGCACTCGCTGCCACGTTCA+GGG | - | Chr5:52759862-52759881 | MsG0580027073.01.T01:CDS | 60.0% | |
| CAGGAGAGGGTTGGATGGCT+TGG | - | Chr5:52760668-52760687 | MsG0580027073.01.T01:CDS | 60.0% | |
| TAGCACTCGCTGCCACGTTC+AGG | - | Chr5:52759861-52759880 | MsG0580027073.01.T01:CDS | 60.0% | |
| ! | GAGAGGGTTGGATGGCTTGG+TGG | - | Chr5:52760671-52760690 | MsG0580027073.01.T01:CDS | 60.0% |
| !! | ATTCTGGTTTCCCGGCACGG+AGG | + | Chr5:52760271-52760290 | None:intergenic | 60.0% |
| !! | TTCTGGTTTCCCGGCACGGA+GGG | + | Chr5:52760270-52760289 | None:intergenic | 60.0% |
| GGGAGCAGGAGAGGGTTGGA+TGG | - | Chr5:52760663-52760682 | MsG0580027073.01.T01:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr5 | gene | 52758940 | 52760961 | 52758940 | ID=MsG0580027073.01;Name=MsG0580027073.01 |
| Chr5 | mRNA | 52758940 | 52760961 | 52758940 | ID=MsG0580027073.01.T01;Parent=MsG0580027073.01;Name=MsG0580027073.01.T01;_AED=0.33;_eAED=0.42;_QI=92|0|0.66|1|1|1|3|90|468 |
| Chr5 | exon | 52758940 | 52759909 | 52758940 | ID=MsG0580027073.01.T01:exon:17363;Parent=MsG0580027073.01.T01 |
| Chr5 | exon | 52760001 | 52760207 | 52760001 | ID=MsG0580027073.01.T01:exon:17362;Parent=MsG0580027073.01.T01 |
| Chr5 | exon | 52760550 | 52760961 | 52760550 | ID=MsG0580027073.01.T01:exon:17361;Parent=MsG0580027073.01.T01 |
| Chr5 | five_prime_UTR | 52760870 | 52760961 | 52760870 | ID=MsG0580027073.01.T01:five_prime_utr;Parent=MsG0580027073.01.T01 |
| Chr5 | CDS | 52760550 | 52760869 | 52760550 | ID=MsG0580027073.01.T01:cds;Parent=MsG0580027073.01.T01 |
| Chr5 | CDS | 52760001 | 52760207 | 52760001 | ID=MsG0580027073.01.T01:cds;Parent=MsG0580027073.01.T01 |
| Chr5 | CDS | 52759030 | 52759909 | 52759030 | ID=MsG0580027073.01.T01:cds;Parent=MsG0580027073.01.T01 |
| Chr5 | three_prime_UTR | 52758940 | 52759029 | 52758940 | ID=MsG0580027073.01.T01:three_prime_utr;Parent=MsG0580027073.01.T01 |
| Gene Sequence |
| Protein sequence |
