AlfalfaGEDB | MsG0180006042.01

M. sativa cultivar ZhongmuNo.1 / MsG0180006042.01

KEGG: K15893
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180006042.01.T01	TKY50754.1	64.604	404	57	5	1	336	1	386	1.44E-166	479

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180006042.01.T01	Q9C9W5	67.449	341	43	2	64	336	46	386	2.72E-148	426

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180006042.01.T01	A0A072VRS6	72.329	365	22	3	40	336	33	386	1.98e-165	476

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047910.01	MsG0180006042.01	0.887927	9.275392e-73	7.036161e-69
MsG0080047945.01	MsG0180006042.01	0.897453	1.386213e-76	1.567169e-72
MsG0080047955.01	MsG0180006042.01	0.902892	6.091099e-79	8.809482e-75
MsG0080047956.01	MsG0180006042.01	0.899164	2.599556e-77	3.174510e-73
MsG0080047989.01	MsG0180006042.01	0.838269	3.179183e-57	4.235866e-54
MsG0080048059.01	MsG0180006042.01	0.813594	2.364767e-51	1.550920e-48
MsG0080048068.01	MsG0180006042.01	0.848325	6.584450e-60	1.203948e-56
MsG0080048528.01	MsG0180006042.01	0.909225	7.204318e-82	1.387291e-77
MsG0080048611.01	MsG0180006042.01	0.854595	1.108377e-61	2.488410e-58
MsG0080048727.01	MsG0180006042.01	0.813123	3.001927e-51	1.943472e-48

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PPI

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Gene1	Gene2	Type
MsG0180006042.01	MsG0880043422.01	PPI
MsG0180006042.01	MsG0580024643.01	PPI
MsG0180006042.01	MsG0580026037.01	PPI
MsG0480018485.01	MsG0180006042.01	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180006042.01.T01	MTR_1g112510	72.329	365	22	3	40	336	33	386	5.01e-169	476
MsG0180006042.01.T01	MTR_4g013090	30.672	238	133	3	93	299	72	308	1.51e-28	112
MsG0180006042.01.T01	MTR_4g013100	31.646	237	132	5	93	299	73	309	1.44e-26	107
MsG0180006042.01.T01	MTR_4g005880	31.599	269	147	6	65	296	124	392	2.78e-24	103
MsG0180006042.01.T01	MTR_4g012960	28.511	235	141	1	92	299	71	305	4.50e-24	100
MsG0180006042.01.T01	MTR_4g013135	31.092	238	132	3	93	299	72	308	6.13e-24	100
MsG0180006042.01.T01	MTR_8g033410	25.847	236	143	2	96	299	86	321	1.00e-20	91.7
MsG0180006042.01.T01	MTR_8g033390	25.551	227	137	3	96	290	83	309	1.53e-20	90.9
MsG0180006042.01.T01	MTR_1g107480	31.818	242	128	6	90	296	120	359	3.94e-19	88.6
MsG0180006042.01.T01	MTR_8g033400	23.894	226	141	1	96	290	94	319	1.37e-18	85.5

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180006042.01.T01	AT1G68010	67.449	341	43	2	64	336	46	386	2.78e-149	426
MsG0180006042.01.T01	AT1G68010	67.251	342	43	3	64	336	46	387	1.67e-147	421
MsG0180006042.01.T01	AT1G68010	66.554	296	31	2	64	291	46	341	7.62e-121	352
MsG0180006042.01.T01	AT1G79870	31.163	215	137	1	93	296	72	286	1.66e-25	104
MsG0180006042.01.T01	AT4G34200	33.333	240	127	5	90	296	126	365	4.12e-23	100
MsG0180006042.01.T01	AT1G79870	29.487	234	135	2	93	296	72	305	6.37e-23	97.4
MsG0180006042.01.T01	AT1G17745	32.500	240	129	5	90	296	147	386	1.61e-22	99.0
MsG0180006042.01.T01	AT1G12550	25.106	235	145	3	96	299	82	316	9.88e-20	88.6
MsG0180006042.01.T01	AT2G45630	27.119	236	132	5	96	297	98	327	4.74e-19	87.0
MsG0180006042.01.T01	AT1G17745	29.213	267	129	5	90	296	147	413	5.66e-19	88.2

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Find 0 sgRNAs with CRISPR-Local

Find 308 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAGAAAATTGTGGAGAAG+TGG	+	Chr1:99259598-99259617	None:intergenic	30.0%
AAAGAAAATTGTGGAGAAGT+GGG	+	Chr1:99259597-99259616	None:intergenic	30.0%
AACCAGTTTCAATTCAAGTA+TGG	-	Chr1:99260027-99260046	MsG0180006042.01.T01:intron	30.0%
ATCATTCATTGTGTTTGGTA+GGG	-	Chr1:99261209-99261228	MsG0180006042.01.T01:intron	30.0%
ATGTATATGTGATGCTGAAT+CGG	-	Chr1:99261102-99261121	MsG0180006042.01.T01:intron	30.0%
ATTCTTATAAACTGCAGTAG+AGG	-	Chr1:99262599-99262618	MsG0180006042.01.T01:intron	30.0%
ATTGTGAATCAAGAATAGAG+GGG	-	Chr1:99260619-99260638	MsG0180006042.01.T01:intron	30.0%
ATTTATGCCAAAACTAGTGT+AGG	-	Chr1:99259232-99259251	MsG0180006042.01.T01:intron	30.0%
CAATGAATGATATGAAACCA+AGG	+	Chr1:99261200-99261219	None:intergenic	30.0%
CAATGCAAAACTGAAATGTA+TGG	+	Chr1:99261596-99261615	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	99258699	99263473	99258699	ID=MsG0180006042.01;
Chr1	mRNA	99258699	99263473	99258699	ID=MsG0180006042.01.T01;Parent=MsG0180006042.01
Chr1	CDS	99258699	99258721	99258699	ID=MsG0180006042.01.T01.cds;Parent=MsG0180006042.01.T01
Chr1	CDS	99258822	99258936	99258822	ID=MsG0180006042.01.T01.cds;Parent=MsG0180006042.01.T01
Chr1	CDS	99259040	99259084	99259040	ID=MsG0180006042.01.T01.cds;Parent=MsG0180006042.01.T01
Chr1	CDS	99259307	99259384	99259307	ID=MsG0180006042.01.T01.cds;Parent=MsG0180006042.01.T01
Chr1	CDS	99259472	99259579	99259472	ID=MsG0180006042.01.T01.cds;Parent=MsG0180006042.01.T01
Chr1	CDS	99259677	99259751	99259677	ID=MsG0180006042.01.T01.cds;Parent=MsG0180006042.01.T01
Chr1	CDS	99259847	99259938	99259847	ID=MsG0180006042.01.T01.cds;Parent=MsG0180006042.01.T01
Chr1	CDS	99260822	99260942	99260822	ID=MsG0180006042.01.T01.cds;Parent=MsG0180006042.01.T01
Chr1	CDS	99261235	99261327	99261235	ID=MsG0180006042.01.T01.cds;Parent=MsG0180006042.01.T01
Chr1	CDS	99261838	99261922	99261838	ID=MsG0180006042.01.T01.cds;Parent=MsG0180006042.01.T01
Chr1	CDS	99263298	99263473	99263298	ID=MsG0180006042.01.T01.cds;Parent=MsG0180006042.01.T01

Gene Sequence

>MsG0180006042.01.T01

ATGGCAGCTCCGTCGTCTTCGTCCTCCGCTGCTCCATCAACAACCGCCCCTCAAACAACGCTTCTTCCTCGCCGGACTCTCCTCCCTCACCTTCGTCTCACTTGTCTTCACCGATGTGTGGTTCAACACGATTGTCGTTGGAACTGCGGTGGTTGTTTTCACACCACAACGCTGAAATATGTACGGAGAGAGAAAACAATTCTGTCAGTTGAAGATATCATTGCTTTGATTGGTGATAAGTGTGATGGAGTTATTGGACAGGAGGGCAAAGCTTTCAGTAATATGGCTGTTGGTTATAATAATGTTGATGTCAATGCTGCAAACAAATATGGTGTTGCTGTTGGAAATACTCCTGGAGTTCTCACAGAGACTACGGCAGAGCTTGCAGCTTCACTGACTTTGGCAGCTGCTAGAAGGATAGTTGAGGCAGATGAGTTCATGAGGCAGGATTATATGATGGCTGGCTACCTCATCTCATATGGTGCTTTCTTAAAGGCAAATGGTGAAACACCAGTAACTTGGAAAAGGGCAGCATCCATGGACGAGGTTCTCCAAGAGGCAGATATAATTAGTCTTCATCCTATCTTGGATAAAACCACTTACCACCTCGTCAACAAGGAAAGACTCGCCAAGATGAAGAAGGAAGCAATTCTTATAAACTGCAGTAGAGGACCTGTTATTGATGAAGTTGCACTTGTGGAGCATTTAAAAGAAAATCCAATGTTTCGCGTAGGCCTTGATGTGTTTGAGGATGAGCCCTACATGAAACCTGGACTTGCAGAGTTGAAGAATGCCGTTGTAGTACCACACATTGCTTCTGCTTCCAAGTGGACTCGTGAGGGAATGGCAACGCTAGCAGCTCTAAATGTGCTGGGCAAGATCAAGGGCTACCCAGTATGGTTTGATGCCAATAGGGTGGAGCCATTTCTTGATGAAAATGCTCAACCTCCAGCTGCATGCCCAAGCATTGTTAATGCAAAAGCCCTGAGTTTACCAGTTTCAAAGCTGTAG

Protein sequence

>MsG0180006042.01.T01

MAAPSSSSSAAPSTTAPQTTLLPRRTLLPHLRLTCLHRCVVQHDCRWNCGGCFHTTTLKYVRREKTILSVEDIIALIGDKCDGVIGQEGKAFSNMAVGYNNVDVNAANKYGVAVGNTPGVLTETTAELAASLTLAAARRIVEADEFMRQDYMMAGYLISYGAFLKANGETPVTWKRAASMDEVLQEADIISLHPILDKTTYHLVNKERLAKMKKEAILINCSRGPVIDEVALVEHLKENPMFRVGLDVFEDEPYMKPGLAELKNAVVVPHIASASKWTREGMATLAALNVLGKIKGYPVWFDANRVEPFLDENAQPPAACPSIVNAKALSLPVSKL*