AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180006042.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180006042.01.T01 MTR_1g112510 72.329 365 22 3 40 336 33 386 5.01e-169 476
MsG0180006042.01.T01 MTR_4g013090 30.672 238 133 3 93 299 72 308 1.51e-28 112
MsG0180006042.01.T01 MTR_4g013100 31.646 237 132 5 93 299 73 309 1.44e-26 107
MsG0180006042.01.T01 MTR_4g005880 31.599 269 147 6 65 296 124 392 2.78e-24 103
MsG0180006042.01.T01 MTR_4g012960 28.511 235 141 1 92 299 71 305 4.50e-24 100
MsG0180006042.01.T01 MTR_4g013135 31.092 238 132 3 93 299 72 308 6.13e-24 100
MsG0180006042.01.T01 MTR_8g033410 25.847 236 143 2 96 299 86 321 1.00e-20 91.7
MsG0180006042.01.T01 MTR_8g033390 25.551 227 137 3 96 290 83 309 1.53e-20 90.9
MsG0180006042.01.T01 MTR_1g107480 31.818 242 128 6 90 296 120 359 3.94e-19 88.6
MsG0180006042.01.T01 MTR_8g033400 23.894 226 141 1 96 290 94 319 1.37e-18 85.5
MsG0180006042.01.T01 MTR_2g101840 28.992 238 138 3 93 299 72 309 8.71e-18 83.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180006042.01.T01 AT1G68010 67.449 341 43 2 64 336 46 386 2.78e-149 426
MsG0180006042.01.T01 AT1G68010 67.251 342 43 3 64 336 46 387 1.67e-147 421
MsG0180006042.01.T01 AT1G68010 66.554 296 31 2 64 291 46 341 7.62e-121 352
MsG0180006042.01.T01 AT1G79870 31.163 215 137 1 93 296 72 286 1.66e-25 104
MsG0180006042.01.T01 AT4G34200 33.333 240 127 5 90 296 126 365 4.12e-23 100
MsG0180006042.01.T01 AT1G79870 29.487 234 135 2 93 296 72 305 6.37e-23 97.4
MsG0180006042.01.T01 AT1G17745 32.500 240 129 5 90 296 147 386 1.61e-22 99.0
MsG0180006042.01.T01 AT1G12550 25.106 235 145 3 96 299 82 316 9.88e-20 88.6
MsG0180006042.01.T01 AT2G45630 27.119 236 132 5 96 297 98 327 4.74e-19 87.0
MsG0180006042.01.T01 AT1G17745 29.213 267 129 5 90 296 147 413 5.66e-19 88.2
MsG0180006042.01.T01 AT3G19480 30.417 240 134 5 90 296 111 350 1.34e-18 87.0
MsG0180006042.01.T01 AT1G72190 25.498 251 145 8 90 299 117 366 1.04e-13 71.6

Find 0 sgRNAs with CRISPR-Local

Find 308 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTATTTTATTTTTAAATAT+AGG - Chr1:99260419-99260438 MsG0180006042.01.T01:intron 0.0%
!! TTAAAATAAAAAGAAAATTG+TGG + Chr1:99259606-99259625 None:intergenic 10.0%
!!! ATTTTTAAATATAGGTTTTT+TGG - Chr1:99260427-99260446 MsG0180006042.01.T01:intron 10.0%
!!! CTAAATAACTATTTTTTTAT+TGG - Chr1:99260514-99260533 MsG0180006042.01.T01:intron 10.0%
!! AATTTAACTATAAATCGAAT+AGG - Chr1:99259663-99259682 MsG0180006042.01.T01:intron 15.0%
!! TCATCATAAACTAAATTATT+AGG + Chr1:99262389-99262408 None:intergenic 15.0%
!! TTAGAATTAAATTAAGTACA+GGG - Chr1:99262926-99262945 MsG0180006042.01.T01:intron 15.0%
!!! AGTTTAAATTTTAACATAAG+AGG - Chr1:99260692-99260711 MsG0180006042.01.T01:intron 15.0%
!!! ATTTACATTTTAAATGTATG+TGG - Chr1:99260987-99261006 MsG0180006042.01.T01:intron 15.0%
!!! CTTCAAATATAAATAGATTT+TGG - Chr1:99259412-99259431 MsG0180006042.01.T01:intron 15.0%
!!! TAATTTTGCATTTTTTTAGA+CGG - Chr1:99259111-99259130 MsG0180006042.01.T01:intron 15.0%
!!! TTTTTTTATTCTGTACTTTT+TGG + Chr1:99258881-99258900 None:intergenic 15.0%
!!! TTTTTTTTATTTGACTTAGT+TGG - Chr1:99259495-99259514 MsG0180006042.01.T01:CDS 15.0%
!! AAAAAAAGTTCTATCATCTT+TGG + Chr1:99259481-99259500 None:intergenic 20.0%
!! AAAAATGCAAAATTACTATG+TGG + Chr1:99259106-99259125 None:intergenic 20.0%
!! AATCTTAAGTAAAACAAGAA+AGG + Chr1:99261368-99261387 None:intergenic 20.0%
!! AATTAATCTCTTGACATAAT+TGG - Chr1:99259151-99259170 MsG0180006042.01.T01:intron 20.0%
!! AATTATTAGGAATGATCAAA+TGG + Chr1:99262376-99262395 None:intergenic 20.0%
!! AGGTTAGTAATTAAAATAGA+GGG - Chr1:99258981-99259000 MsG0180006042.01.T01:intron 20.0%
!! AGTTGCTAATAAAAATTACT+TGG - Chr1:99261677-99261696 MsG0180006042.01.T01:intron 20.0%
!! ATAAATCGAATAGGATAAAA+TGG - Chr1:99259672-99259691 MsG0180006042.01.T01:intron 20.0%
!! ATAACTAAAATTGATTACCT+TGG + Chr1:99262864-99262883 None:intergenic 20.0%
!! ATCCATTTAAACAAATCATA+GGG + Chr1:99262166-99262185 None:intergenic 20.0%
!! ATTATTAGGAATGATCAAAT+GGG + Chr1:99262375-99262394 None:intergenic 20.0%
!! CTTAGAATTAAATTAAGTAC+AGG - Chr1:99262925-99262944 MsG0180006042.01.T01:intron 20.0%
!! TAGGTTAGTAATTAAAATAG+AGG - Chr1:99258980-99258999 MsG0180006042.01.T01:intron 20.0%
!! TATCCATTTAAACAAATCAT+AGG + Chr1:99262167-99262186 None:intergenic 20.0%
!! TCACATTAACTTCAAATAAA+AGG - Chr1:99259791-99259810 MsG0180006042.01.T01:intron 20.0%
!! TCCTAATAAAAAAAATCACA+TGG + Chr1:99262770-99262789 None:intergenic 20.0%
!! TTATTGAATTCAGATATGTA+CGG - Chr1:99260237-99260256 MsG0180006042.01.T01:intron 20.0%
!!! AATAGTTTTCTTTTTCTAAG+AGG - Chr1:99259181-99259200 MsG0180006042.01.T01:intron 20.0%
!!! ACCATGTGATTTTTTTTATT+AGG - Chr1:99262766-99262785 MsG0180006042.01.T01:intron 20.0%
!!! AGTTTTATTTGCAACATATT+TGG + Chr1:99263384-99263403 None:intergenic 20.0%
!!! ATTCTAAGTTAACAGATTTT+TGG + Chr1:99261983-99262002 None:intergenic 20.0%
!!! TATATTTTATTTCTAATCGC+AGG - Chr1:99263429-99263448 MsG0180006042.01.T01:CDS 20.0%
!!! TGTGAAAAGAATCTTTTTTT+AGG + Chr1:99263018-99263037 None:intergenic 20.0%
!!! TTTATTTGAAGTTAATGTGA+GGG + Chr1:99259791-99259810 None:intergenic 20.0%
!!! TTTTATTTGAAGTTAATGTG+AGG + Chr1:99259792-99259811 None:intergenic 20.0%
! AAAAAAAAAAGAGAAGCTAG+TGG - Chr1:99261888-99261907 MsG0180006042.01.T01:CDS 25.0%
! AAACATGTCAAAATTAGTGT+TGG - Chr1:99259322-99259341 MsG0180006042.01.T01:CDS 25.0%
! AAATTATATGTGAAGTTAGC+TGG - Chr1:99259523-99259542 MsG0180006042.01.T01:CDS 25.0%
! AATATAGTGATTGAGTGATT+CGG + Chr1:99259930-99259949 None:intergenic 25.0%
! AATGCAAAACTGAAATGTAT+GGG + Chr1:99261595-99261614 None:intergenic 25.0%
! AATTTACATTGATCAAACGT+AGG + Chr1:99263170-99263189 None:intergenic 25.0%
! ATATTGTGAATCAAGAATAG+AGG - Chr1:99260617-99260636 MsG0180006042.01.T01:intron 25.0%
! GACTTGGCATAAAATTAAAA+CGG - Chr1:99261712-99261731 MsG0180006042.01.T01:intron 25.0%
! GTGAAAAATGTTATTACTCA+GGG + Chr1:99263348-99263367 None:intergenic 25.0%
! TAATGATATATTCTTATCGC+AGG - Chr1:99262571-99262590 MsG0180006042.01.T01:intron 25.0%
! TATTGTCACGATATTCAAAT+TGG - Chr1:99261936-99261955 MsG0180006042.01.T01:intron 25.0%
! TATTGTGAATCAAGAATAGA+GGG - Chr1:99260618-99260637 MsG0180006042.01.T01:intron 25.0%
! TCTAAATTCATCCATTTCAT+TGG - Chr1:99259871-99259890 MsG0180006042.01.T01:CDS 25.0%
! TTCATATCATTCATTGTGTT+TGG - Chr1:99261204-99261223 MsG0180006042.01.T01:intron 25.0%
! TTTAACATAAAAGCAACTCT+CGG - Chr1:99260731-99260750 MsG0180006042.01.T01:intron 25.0%
!! ATATTTTCTGACCAATGAAA+TGG + Chr1:99259885-99259904 None:intergenic 25.0%
!! GATATTGCATTTTATATCAG+GGG - Chr1:99259550-99259569 MsG0180006042.01.T01:CDS 25.0%
!! GGATATTGCATTTTATATCA+GGG - Chr1:99259549-99259568 MsG0180006042.01.T01:CDS 25.0%
!! TAATTAAAATAGAGGGTATG+TGG - Chr1:99258988-99259007 MsG0180006042.01.T01:intron 25.0%
!!! ATGTGGTTTTTTTTACTTCT+GGG - Chr1:99260454-99260473 MsG0180006042.01.T01:intron 25.0%
!!! CAGTTTTGATTTTGTTTATC+TGG - Chr1:99261476-99261495 MsG0180006042.01.T01:intron 25.0%
!!! GAAAAGAATCTTTTTTTAGG+TGG + Chr1:99263015-99263034 None:intergenic 25.0%
!!! GAAGTTATTTGTTATAACCT+TGG - Chr1:99261180-99261199 MsG0180006042.01.T01:intron 25.0%
!!! GTTTATTTTTCATACAGATG+AGG + Chr1:99261346-99261365 None:intergenic 25.0%
!!! TAAGTTAACAGATTTTTGGA+AGG + Chr1:99261979-99261998 None:intergenic 25.0%
!!! TATGTGGTTTTTTTTACTTC+TGG - Chr1:99260453-99260472 MsG0180006042.01.T01:intron 25.0%
!!! TTTAGAAGACTTTGACTTTT+TGG + Chr1:99259857-99259876 None:intergenic 25.0%
AAAAGAAAATTGTGGAGAAG+TGG + Chr1:99259598-99259617 None:intergenic 30.0%
AAAGAAAATTGTGGAGAAGT+GGG + Chr1:99259597-99259616 None:intergenic 30.0%
AACCAGTTTCAATTCAAGTA+TGG - Chr1:99260027-99260046 MsG0180006042.01.T01:intron 30.0%
ATCATTCATTGTGTTTGGTA+GGG - Chr1:99261209-99261228 MsG0180006042.01.T01:intron 30.0%
ATGTATATGTGATGCTGAAT+CGG - Chr1:99261102-99261121 MsG0180006042.01.T01:intron 30.0%
ATTCTTATAAACTGCAGTAG+AGG - Chr1:99262599-99262618 MsG0180006042.01.T01:intron 30.0%
ATTGTGAATCAAGAATAGAG+GGG - Chr1:99260619-99260638 MsG0180006042.01.T01:intron 30.0%
ATTTATGCCAAAACTAGTGT+AGG - Chr1:99259232-99259251 MsG0180006042.01.T01:intron 30.0%
CAATGAATGATATGAAACCA+AGG + Chr1:99261200-99261219 None:intergenic 30.0%
CAATGCAAAACTGAAATGTA+TGG + Chr1:99261596-99261615 None:intergenic 30.0%
GAAGATATCATTGCTTTGAT+TGG - Chr1:99260284-99260303 MsG0180006042.01.T01:intron 30.0%
GGTGAAAAATGTTATTACTC+AGG + Chr1:99263349-99263368 None:intergenic 30.0%
TAAATACTCTCCCTATGATT+GGG + Chr1:99259014-99259033 None:intergenic 30.0%
TATCATTCATTGTGTTTGGT+AGG - Chr1:99261208-99261227 MsG0180006042.01.T01:intron 30.0%
TCAAAGTTATCATGTATGCT+TGG - Chr1:99261033-99261052 MsG0180006042.01.T01:intron 30.0%
TGTTAGTGTCAAAATGATAC+AGG + Chr1:99260960-99260979 None:intergenic 30.0%
TTAAATACTCTCCCTATGAT+TGG + Chr1:99259015-99259034 None:intergenic 30.0%
TTAACATAAAAGCAACTCTC+GGG - Chr1:99260732-99260751 MsG0180006042.01.T01:intron 30.0%
TTCCATACTTGAATTGAAAC+TGG + Chr1:99260032-99260051 None:intergenic 30.0%
TTCTTTGTTGAGTCAATCAA+TGG - Chr1:99260192-99260211 MsG0180006042.01.T01:intron 30.0%
! ATGTACTAAAGTGTTTATCG+AGG - Chr1:99260664-99260683 MsG0180006042.01.T01:intron 30.0%
! CAATTTTCCCTCAAAAAAGA+AGG + Chr1:99258937-99258956 None:intergenic 30.0%
! CTTTTGCATTAACAATGCTT+GGG + Chr1:99263325-99263344 None:intergenic 30.0%
! GCTCATCAGTTTTACAAAAT+AGG + Chr1:99263201-99263220 None:intergenic 30.0%
! GGGATATTGCATTTTATATC+AGG - Chr1:99259548-99259567 MsG0180006042.01.T01:CDS 30.0%
! TGAGCATTTTCATCAAGAAA+TGG + Chr1:99263287-99263306 None:intergenic 30.0%
! TTTTTCCTTATTGCAGCATA+TGG - Chr1:99262218-99262237 MsG0180006042.01.T01:intron 30.0%
!! AATAGTGATTAGTCTTGATG+AGG - Chr1:99261158-99261177 MsG0180006042.01.T01:intron 30.0%
!! ATGTTAGTGGTTAGTTTACT+AGG + Chr1:99262984-99263003 None:intergenic 30.0%
!! GTCCCTATGATTTGTTTAAA+TGG - Chr1:99262161-99262180 MsG0180006042.01.T01:intron 30.0%
!! TGTTAGTGGTTAGTTTACTA+GGG + Chr1:99262983-99263002 None:intergenic 30.0%
!! TTGGTTTTTGAATACTGACT+TGG - Chr1:99261696-99261715 MsG0180006042.01.T01:intron 30.0%
!!! ACTTTCACCTTCTTTTTTGA+GGG - Chr1:99258927-99258946 MsG0180006042.01.T01:intron 30.0%
!!! ACTTTTCTAGTCTTGTAGAT+TGG + Chr1:99262128-99262147 None:intergenic 30.0%
!!! ATAGGTTTTTTGGTTGTATG+TGG - Chr1:99260437-99260456 MsG0180006042.01.T01:intron 30.0%
!!! TAAGTGGTTTTATCCAAGAT+AGG + Chr1:99262436-99262455 None:intergenic 30.0%
!!! TACTTTCACCTTCTTTTTTG+AGG - Chr1:99258926-99258945 MsG0180006042.01.T01:intron 30.0%
!!! TGTGGTTTTTTTTACTTCTG+GGG - Chr1:99260455-99260474 MsG0180006042.01.T01:intron 30.0%
AAACACCAGTAACTTGGAAA+AGG - Chr1:99262264-99262283 MsG0180006042.01.T01:intron 35.0%
AAATTACTTATGGCATCACG+TGG - Chr1:99262529-99262548 MsG0180006042.01.T01:intron 35.0%
AACACCAGTAACTTGGAAAA+GGG - Chr1:99262265-99262284 MsG0180006042.01.T01:intron 35.0%
AACTCTAACCTTCTTCATCT+TGG + Chr1:99262485-99262504 None:intergenic 35.0%
AATCACATGGTGTCTTGAAA+AGG + Chr1:99262757-99262776 None:intergenic 35.0%
AGACTAGAAAAGTTTGTCAC+AGG - Chr1:99262135-99262154 MsG0180006042.01.T01:intron 35.0%
AGCATATGGTGCTTTCTTAA+AGG - Chr1:99262232-99262251 MsG0180006042.01.T01:intron 35.0%
AGTATGGTTTGATGCCAATA+GGG - Chr1:99263256-99263275 MsG0180006042.01.T01:intron 35.0%
AGTGCAACTTCATCAATAAC+AGG + Chr1:99262626-99262645 None:intergenic 35.0%
ATAATACAGGGCAAGATCAA+GGG - Chr1:99263227-99263246 MsG0180006042.01.T01:intron 35.0%
ATATGTGAAGTTAGCTGGTA+GGG - Chr1:99259528-99259547 MsG0180006042.01.T01:CDS 35.0%
ATCAGCTTATGCAAGAATGA+TGG - Chr1:99261562-99261581 MsG0180006042.01.T01:intron 35.0%
ATCCTACTTGAAAGTTCTCT+AGG - Chr1:99261740-99261759 MsG0180006042.01.T01:intron 35.0%
ATGAAGAAGGTTAGAGTTCA+AGG - Chr1:99262487-99262506 MsG0180006042.01.T01:intron 35.0%
ATGAGCCTCCTTATAATACA+GGG - Chr1:99263215-99263234 MsG0180006042.01.T01:intron 35.0%
ATTCAAATTGGCCAAGTTAC+TGG - Chr1:99261948-99261967 MsG0180006042.01.T01:intron 35.0%
ATTCAAGTATGGAACCCAAA+TGG - Chr1:99260038-99260057 MsG0180006042.01.T01:intron 35.0%
ATTGTACTTTCACCTGTGAA+CGG - Chr1:99258953-99258972 MsG0180006042.01.T01:intron 35.0%
CAATCAAGTGAACCTGAAAT+GGG + Chr1:99261632-99261651 None:intergenic 35.0%
CTCTAGGTCACATAATATCT+AGG - Chr1:99261756-99261775 MsG0180006042.01.T01:intron 35.0%
GAATGAAAGAGAAAGCTTAC+AGG + Chr1:99260938-99260957 None:intergenic 35.0%
GTCAATGCTGCAAACAAATA+TGG - Chr1:99260893-99260912 MsG0180006042.01.T01:CDS 35.0%
GTGTTGAGATAGATACGATA+GGG + Chr1:99259756-99259775 None:intergenic 35.0%
TATAATACAGGGCAAGATCA+AGG - Chr1:99263226-99263245 MsG0180006042.01.T01:intron 35.0%
TATATGTGAAGTTAGCTGGT+AGG - Chr1:99259527-99259546 MsG0180006042.01.T01:CDS 35.0%
TATCATGTATGCTTGGATGA+GGG - Chr1:99261040-99261059 MsG0180006042.01.T01:intron 35.0%
TATTGATGAAGTTGCACTTG+TGG - Chr1:99262628-99262647 MsG0180006042.01.T01:intron 35.0%
TATTGGCATCAAACCATACT+GGG + Chr1:99263256-99263275 None:intergenic 35.0%
TCAATCAAGTGAACCTGAAA+TGG + Chr1:99261633-99261652 None:intergenic 35.0%
TGAAGAAGGTTAGAGTTCAA+GGG - Chr1:99262488-99262507 MsG0180006042.01.T01:intron 35.0%
TGATCTTGCCCTGTATTATA+AGG + Chr1:99263226-99263245 None:intergenic 35.0%
TGCTGAATCGGTTGTAATTA+TGG - Chr1:99261114-99261133 MsG0180006042.01.T01:intron 35.0%
TGTTGAGATAGATACGATAG+GGG + Chr1:99259755-99259774 None:intergenic 35.0%
TGTTTATCTGGCAGATTTGT+TGG - Chr1:99261488-99261507 MsG0180006042.01.T01:intron 35.0%
TTATCATGTATGCTTGGATG+AGG - Chr1:99261039-99261058 MsG0180006042.01.T01:intron 35.0%
TTCTTACTATATCTGCCTCT+TGG + Chr1:99262313-99262332 None:intergenic 35.0%
TTGCATAAGCTGATCCAATA+CGG + Chr1:99261556-99261575 None:intergenic 35.0%
TTGTGAATCAAGAATAGAGG+GGG - Chr1:99260620-99260639 MsG0180006042.01.T01:intron 35.0%
TTGTTATCCAAAAGCAGACA+AGG + Chr1:99262713-99262732 None:intergenic 35.0%
! AATTGAACCTTGTCTGCTTT+TGG - Chr1:99262703-99262722 MsG0180006042.01.T01:intron 35.0%
! ACATTTTTCACCCTTTCACT+TGG - Chr1:99263357-99263376 MsG0180006042.01.T01:CDS 35.0%
! ACGACTCTGTATTTTCCATT+TGG + Chr1:99260056-99260075 None:intergenic 35.0%
! ATGATGATGTGTAGAGGATT+TGG + Chr1:99259819-99259838 None:intergenic 35.0%
! ATTTGAAGTTAATGTGAGGG+AGG + Chr1:99259788-99259807 None:intergenic 35.0%
! ATTTGTTGGAAACTTGCTCA+AGG - Chr1:99261502-99261521 MsG0180006042.01.T01:intron 35.0%
! CATTTTTCACCCTTTCACTT+GGG - Chr1:99263358-99263377 MsG0180006042.01.T01:CDS 35.0%
! CGACTCTGTATTTTCCATTT+GGG + Chr1:99260055-99260074 None:intergenic 35.0%
! GATAAGTGTGATGGAGTTAT+TGG - Chr1:99260308-99260327 MsG0180006042.01.T01:intron 35.0%
! GATGAACGAACTTTTCGTAA+CGG + Chr1:99259978-99259997 None:intergenic 35.0%
! GCTTTTGCATTAACAATGCT+TGG + Chr1:99263326-99263345 None:intergenic 35.0%
! TGATTCTTTTCTGCTGTATC+AGG - Chr1:99262063-99262082 MsG0180006042.01.T01:intron 35.0%
! TTGATTGGTGATAAGTGTGA+TGG - Chr1:99260299-99260318 MsG0180006042.01.T01:intron 35.0%
! TTGCATTTTATATCAGGGGT+CGG - Chr1:99259554-99259573 MsG0180006042.01.T01:CDS 35.0%
! TTTGTTGGAAACTTGCTCAA+GGG - Chr1:99261503-99261522 MsG0180006042.01.T01:intron 35.0%
!! AACAAATATGGTGTTGCTGT+TGG - Chr1:99260905-99260924 MsG0180006042.01.T01:CDS 35.0%
!! GATGAGTTGATGTAACGTTT+AGG + Chr1:99259726-99259745 None:intergenic 35.0%
!! GATTAGTCTTCATCCTATCT+TGG - Chr1:99262420-99262439 MsG0180006042.01.T01:intron 35.0%
!!! ACTTTTTGGTTGCTTGATCA+TGG + Chr1:99259843-99259862 None:intergenic 35.0%
AAGCACCATATGCTGCAATA+AGG + Chr1:99262226-99262245 None:intergenic 40.0%
AATCCAAGATGGAGAGACAT+AGG + Chr1:99263143-99263162 None:intergenic 40.0%
AATCGTGTTGAACCACACAT+CGG + Chr1:99258812-99258831 None:intergenic 40.0%
ACATATTTGGCCCAAGTGAA+AGG + Chr1:99263371-99263390 None:intergenic 40.0%
ACGTAGGAATGAATCCAAGA+TGG + Chr1:99263154-99263173 None:intergenic 40.0%
AGCAATGTGTGGTACTACAA+CGG + Chr1:99262834-99262853 None:intergenic 40.0%
AGGTTGTACTGCTAAACCTT+CGG - Chr1:99261071-99261090 MsG0180006042.01.T01:intron 40.0%
ATATACATGCATGTACCCGA+AGG + Chr1:99261090-99261109 None:intergenic 40.0%
ATCCAAGATGGAGAGACATA+GGG + Chr1:99263142-99263161 None:intergenic 40.0%
ATGGTGAAACACCAGTAACT+TGG - Chr1:99262258-99262277 MsG0180006042.01.T01:intron 40.0%
ATGTCTATCCATCCCATTTC+AGG - Chr1:99261617-99261636 MsG0180006042.01.T01:intron 40.0%
ATTGAATCAGTGAGTCAAGG+TGG + Chr1:99260002-99260021 None:intergenic 40.0%
CAGCTACAAAGTTTAACTCG+AGG + Chr1:99262343-99262362 None:intergenic 40.0%
CAGTATGGTTTGATGCCAAT+AGG - Chr1:99263255-99263274 MsG0180006042.01.T01:intron 40.0%
CATATTTGGCCCAAGTGAAA+GGG + Chr1:99263370-99263389 None:intergenic 40.0%
CATGAGGCAGGATTATATGA+TGG - Chr1:99261313-99261332 MsG0180006042.01.T01:intron 40.0%
CTATTGGCATCAAACCATAC+TGG + Chr1:99263257-99263276 None:intergenic 40.0%
CTTGGATGAGGGATTTCTTT+AGG - Chr1:99261051-99261070 MsG0180006042.01.T01:intron 40.0%
GAAAATCCAATGTTTCGCGT+AGG - Chr1:99262662-99262681 MsG0180006042.01.T01:intron 40.0%
GATGAGCCTCCTTATAATAC+AGG - Chr1:99263214-99263233 MsG0180006042.01.T01:intron 40.0%
GCTTTCAGTAATATGGCTGT+TGG - Chr1:99260854-99260873 MsG0180006042.01.T01:CDS 40.0%
GGGCAAAGCTTTCAGTAATA+TGG - Chr1:99260847-99260866 MsG0180006042.01.T01:CDS 40.0%
GGTGCTTTCTTAAAGGCAAA+TGG - Chr1:99262239-99262258 MsG0180006042.01.T01:intron 40.0%
GGTGGATATGCAAATGTTAG+TGG + Chr1:99262997-99263016 None:intergenic 40.0%
GTTAGCACAAAATCAATGCC+TGG - Chr1:99260074-99260093 MsG0180006042.01.T01:intron 40.0%
GTTGAGATAGATACGATAGG+GGG + Chr1:99259754-99259773 None:intergenic 40.0%
TACCAGTTTCAAAGCTGTAG+AGG - Chr1:99263454-99263473 MsG0180006042.01.T01:CDS 40.0%
TCTTGCCCTGTATTATAAGG+AGG + Chr1:99263223-99263242 None:intergenic 40.0%
TGTGCTATACACTCTTCTGA+AGG - Chr1:99261444-99261463 MsG0180006042.01.T01:intron 40.0%
TTGAGATAGATACGATAGGG+GGG + Chr1:99259753-99259772 None:intergenic 40.0%
TTTCATGCATGTGTTTGCAG+TGG - Chr1:99263068-99263087 MsG0180006042.01.T01:intron 40.0%
! CATGGAATGATGATGTGTAG+AGG + Chr1:99259825-99259844 None:intergenic 40.0%
! CTAAAGTGTTTATCGAGGAG+AGG - Chr1:99260669-99260688 MsG0180006042.01.T01:intron 40.0%
! GACCTAGAGAACTTTCAAGT+AGG + Chr1:99261745-99261764 None:intergenic 40.0%
! GGTGTTGAGATAGATACGAT+AGG + Chr1:99259757-99259776 None:intergenic 40.0%
! GTTAGTTTACTAGGGAGAAG+GGG + Chr1:99262975-99262994 None:intergenic 40.0%
!! ACCTTGACTCACTGATTCAA+TGG - Chr1:99260001-99260020 MsG0180006042.01.T01:intron 40.0%
!! AGGAACACCTACACTAGTTT+TGG + Chr1:99259242-99259261 None:intergenic 40.0%
!! GGACAAACAGTTGGTGTTAT+CGG - Chr1:99261524-99261543 MsG0180006042.01.T01:intron 40.0%
!! GGTTAGTTTACTAGGGAGAA+GGG + Chr1:99262976-99262995 None:intergenic 40.0%
!! GTCTGCTTTTGGATAACAAC+AGG - Chr1:99262714-99262733 MsG0180006042.01.T01:intron 40.0%
!! TGGTTAGTTTACTAGGGAGA+AGG + Chr1:99262977-99262996 None:intergenic 40.0%
!! TTCTGCTGTATCAGGTTGAA+GGG - Chr1:99262071-99262090 MsG0180006042.01.T01:intron 40.0%
!! TTTCTGCTGTATCAGGTTGA+AGG - Chr1:99262070-99262089 MsG0180006042.01.T01:intron 40.0%
AAGAAATGGCTCCACCCTAT+TGG + Chr1:99263273-99263292 None:intergenic 45.0%
AAGACTCGCCAAGATGAAGA+AGG - Chr1:99262474-99262493 MsG0180006042.01.T01:intron 45.0%
AATCAATGCCTGGAACTCGT+TGG - Chr1:99260084-99260103 MsG0180006042.01.T01:intron 45.0%
ACACATTGCTTCTGCTTCCA+AGG - Chr1:99262844-99262863 MsG0180006042.01.T01:intron 45.0%
AGATTGATCCAACGAGTTCC+AGG + Chr1:99260095-99260114 None:intergenic 45.0%
AGCTGCTAGAAGGATAGTTG+AGG - Chr1:99261280-99261299 MsG0180006042.01.T01:CDS 45.0%
AGGCAGGATTATATGATGGC+TGG - Chr1:99261317-99261336 MsG0180006042.01.T01:intron 45.0%
ATAAAAGCAACTCTCGGGAG+AGG - Chr1:99260737-99260756 MsG0180006042.01.T01:intron 45.0%
ATCCCTATGTCTCTCCATCT+TGG - Chr1:99263137-99263156 MsG0180006042.01.T01:intron 45.0%
ATCCTTCCATTTGCAACGAG+AGG - Chr1:99259700-99259719 MsG0180006042.01.T01:CDS 45.0%
ATGGTTTGATGCCAATAGGG+TGG - Chr1:99263259-99263278 MsG0180006042.01.T01:intron 45.0%
CAAGTGAACCTGAAATGGGA+TGG + Chr1:99261628-99261647 None:intergenic 45.0%
CACATGGTGTCTTGAAAAGG+TGG + Chr1:99262754-99262773 None:intergenic 45.0%
CTAACCTACTAACCGTTCAC+AGG + Chr1:99258968-99258987 None:intergenic 45.0%
GCAAGTCCAGGTTTCATGTA+GGG + Chr1:99262797-99262816 None:intergenic 45.0%
GCCATTGAATCAGTGAGTCA+AGG + Chr1:99260005-99260024 None:intergenic 45.0%
GGTTGTACTGCTAAACCTTC+GGG - Chr1:99261072-99261091 MsG0180006042.01.T01:intron 45.0%
TAAAAGCAACTCTCGGGAGA+GGG - Chr1:99260738-99260757 MsG0180006042.01.T01:intron 45.0%
TAGTGTAGGTGTTCCTGCAT+GGG - Chr1:99259246-99259265 MsG0180006042.01.T01:intron 45.0%
TATCTATCTAGTGCCCATGC+AGG + Chr1:99259262-99259281 None:intergenic 45.0%
TGCAAGTCCAGGTTTCATGT+AGG + Chr1:99262798-99262817 None:intergenic 45.0%
TGGTTCAACACGATTGTCGT+TGG - Chr1:99258817-99258836 MsG0180006042.01.T01:intron 45.0%
TTCACCTGTGAACGGTTAGT+AGG - Chr1:99258961-99258980 MsG0180006042.01.T01:intron 45.0%
TTCTTCAACTCTGCAAGTCC+AGG + Chr1:99262809-99262828 None:intergenic 45.0%
TTGAGGCAGATGAGTTCATG+AGG - Chr1:99261297-99261316 MsG0180006042.01.T01:CDS 45.0%
TTGCTCAAGGGACAAACAGT+TGG - Chr1:99261515-99261534 MsG0180006042.01.T01:intron 45.0%
TTGGAAGCAGAAGCAATGTG+TGG + Chr1:99262845-99262864 None:intergenic 45.0%
TTTAGGCCTCTCGTTGCAAA+TGG + Chr1:99259709-99259728 None:intergenic 45.0%
TTTGCAGCTGACTGAAGACT+GGG - Chr1:99260789-99260808 MsG0180006042.01.T01:intron 45.0%
! CTATACACTCTTCTGAAGGC+TGG - Chr1:99261448-99261467 MsG0180006042.01.T01:intron 45.0%
! GTGTGATGGAGTTATTGGAC+AGG - Chr1:99260313-99260332 MsG0180006042.01.T01:intron 45.0%
! TTCTCTGCTTTGAGCAAAGC+AGG - Chr1:99260823-99260842 MsG0180006042.01.T01:CDS 45.0%
! TTTTGCAGCTGACTGAAGAC+TGG - Chr1:99260788-99260807 MsG0180006042.01.T01:intron 45.0%
!! AGGAAGAAGCGTTGTTTGAG+GGG + Chr1:99258748-99258767 None:intergenic 45.0%
!! AGTGATTCGGTGTGAAACAG+TGG + Chr1:99259917-99259936 None:intergenic 45.0%
!! GAGGAAGAAGCGTTGTTTGA+GGG + Chr1:99258749-99258768 None:intergenic 45.0%
!! TTTTTGGCACTTCAGCGTTG+TGG + Chr1:99258865-99258884 None:intergenic 45.0%
!! TTATATATTTAAATTACTTA+TGG - Chr1:99262519-99262538 MsG0180006042.01.T01:intron 5.0%
AAACAACGCTTCTTCCTCGC+CGG - Chr1:99258751-99258770 MsG0180006042.01.T01:intron 50.0%
AATGTGAGGGAGGAGACATG+AGG + Chr1:99259778-99259797 None:intergenic 50.0%
AGACAAGTGAGACGAAGGTG+AGG + Chr1:99258786-99258805 None:intergenic 50.0%
AGATCAAGGGCTACCCAGTA+TGG - Chr1:99263240-99263259 MsG0180006042.01.T01:intron 50.0%
AGGGTATGTGGCCCAATCAT+AGG - Chr1:99259000-99259019 MsG0180006042.01.T01:intron 50.0%
CACGATTGTCGTTGGAACTG+CGG - Chr1:99258825-99258844 MsG0180006042.01.T01:CDS 50.0%
CACTTACCACCTCGTCAACA+AGG - Chr1:99262450-99262469 MsG0180006042.01.T01:intron 50.0%
CACTTGTCTTCACCGATGTG+TGG - Chr1:99258797-99258816 MsG0180006042.01.T01:intron 50.0%
CGAGTCTTTCCTTGTTGACG+AGG + Chr1:99262462-99262481 None:intergenic 50.0%
CTAGTGTAGGTGTTCCTGCA+TGG - Chr1:99259245-99259264 MsG0180006042.01.T01:intron 50.0%
CTTGTTGACGAGGTGGTAAG+TGG + Chr1:99262452-99262471 None:intergenic 50.0%
GACAAGTGAGACGAAGGTGA+GGG + Chr1:99258785-99258804 None:intergenic 50.0%
GATGAGCCCTACATGAAACC+TGG - Chr1:99262788-99262807 MsG0180006042.01.T01:intron 50.0%
GGAAGGCTTGTCCAGTAACT+TGG + Chr1:99261962-99261981 None:intergenic 50.0%
GGGAGTTCTCACAGAGACTA+CGG - Chr1:99261229-99261248 MsG0180006042.01.T01:intron 50.0%
GGGTATGTGGCCCAATCATA+GGG - Chr1:99259001-99259020 MsG0180006042.01.T01:intron 50.0%
GGTGAAGACAAGTGAGACGA+AGG + Chr1:99258791-99258810 None:intergenic 50.0%
GTCTTTCCTTGTTGACGAGG+TGG + Chr1:99262459-99262478 None:intergenic 50.0%
TCAAGGCCTACGCGAAACAT+TGG + Chr1:99262671-99262690 None:intergenic 50.0%
TGACTTTGGCAGCTGCTAGA+AGG - Chr1:99261270-99261289 MsG0180006042.01.T01:CDS 50.0%
TTGCAGCTGACTGAAGACTG+GGG - Chr1:99260790-99260809 MsG0180006042.01.T01:intron 50.0%
TTGGAAAAGGGCAGCATCCA+TGG - Chr1:99262277-99262296 MsG0180006042.01.T01:intron 50.0%
! CTGCTTTGAGCAAAGCAGGA+GGG - Chr1:99260827-99260846 MsG0180006042.01.T01:CDS 50.0%
! GCTGCCCTTTTCCAAGTTAC+TGG + Chr1:99262272-99262291 None:intergenic 50.0%
! TCTGCTTTGAGCAAAGCAGG+AGG - Chr1:99260826-99260845 MsG0180006042.01.T01:CDS 50.0%
! TGTTTGCAGTGGACTCGTGA+GGG - Chr1:99263079-99263098 MsG0180006042.01.T01:intron 50.0%
!! AAGAAGCGTTGTTTGAGGGG+CGG + Chr1:99258745-99258764 None:intergenic 50.0%
!! ACAGTTGGTGTTATCGGAGC+TGG - Chr1:99261530-99261549 MsG0180006042.01.T01:intron 50.0%
!! CGAGGAAGAAGCGTTGTTTG+AGG + Chr1:99258750-99258769 None:intergenic 50.0%
!! GCTAGCAGCTCTAAATGTGC+TGG - Chr1:99263111-99263130 MsG0180006042.01.T01:intron 50.0%
!! GCTTGCAGCTTCACTGACTT+TGG - Chr1:99261256-99261275 MsG0180006042.01.T01:CDS 50.0%
AAGTGAGACGAAGGTGAGGG+AGG + Chr1:99258782-99258801 None:intergenic 55.0%
ACAATGCTTGGGCATGCAGC+TGG + Chr1:99263314-99263333 None:intergenic 55.0%
AGTCCCAACCCATACCACTG+CGG + Chr1:99262907-99262926 None:intergenic 55.0%
CATGGACGAGGTTCTCCAAG+AGG - Chr1:99262295-99262314 MsG0180006042.01.T01:intron 55.0%
CTCTTGGAGAACCTCGTCCA+TGG + Chr1:99262297-99262316 None:intergenic 55.0%
GATTGTCGTTGGAACTGCGG+TGG - Chr1:99258828-99258847 MsG0180006042.01.T01:CDS 55.0%
GGCAGATGAGTTCATGAGGC+AGG - Chr1:99261301-99261320 MsG0180006042.01.T01:CDS 55.0%
GGCCTCTCGTTGCAAATGGA+AGG + Chr1:99259705-99259724 None:intergenic 55.0%
GTTATCGGAGCTGGCCGTAT+TGG - Chr1:99261539-99261558 MsG0180006042.01.T01:intron 55.0%
GTTTGAGGGGCGGTTGTTGA+TGG + Chr1:99258735-99258754 None:intergenic 55.0%
TCATGTCCCCGCAGTGGTAT+GGG - Chr1:99262896-99262915 MsG0180006042.01.T01:intron 55.0%
TGTGGAGAAGTGGGTGTCCA+GGG + Chr1:99259588-99259607 None:intergenic 55.0%
TTCATGTCCCCGCAGTGGTA+TGG - Chr1:99262895-99262914 MsG0180006042.01.T01:intron 55.0%
TTGTGGAGAAGTGGGTGTCC+AGG + Chr1:99259589-99259608 None:intergenic 55.0%
! GTCTTTTCATGTCCCCGCAG+TGG - Chr1:99262890-99262909 MsG0180006042.01.T01:intron 55.0%
! GTGTTTGCAGTGGACTCGTG+AGG - Chr1:99263078-99263097 MsG0180006042.01.T01:intron 55.0%
AAGGGCAGCATCCATGGACG+AGG - Chr1:99262283-99262302 MsG0180006042.01.T01:intron 60.0%
ATGCTTGGGCATGCAGCTGG+AGG + Chr1:99263311-99263330 None:intergenic 60.0%
GAAGGTGAGGGAGGAGAGTC+CGG + Chr1:99258773-99258792 None:intergenic 60.0%
GTCCCAACCCATACCACTGC+GGG + Chr1:99262906-99262925 None:intergenic 60.0%
TATCCAGTGCTCGTGCCGCA+AGG + Chr1:99259356-99259375 None:intergenic 60.0%
TCCCAACCCATACCACTGCG+GGG + Chr1:99262905-99262924 None:intergenic 60.0%
TCCCCGCAGTGGTATGGGTT+GGG - Chr1:99262901-99262920 MsG0180006042.01.T01:intron 60.0%
! AGGGGTCGGTGTTTGAACCC+TGG - Chr1:99259568-99259587 MsG0180006042.01.T01:intron 60.0%
! GCAGTGGACTCGTGAGGGAA+TGG - Chr1:99263084-99263103 MsG0180006042.01.T01:intron 60.0%
! GGCGGTTGTTGATGGAGCAG+CGG + Chr1:99258727-99258746 None:intergenic 60.0%
! GGTTGTTGATGGAGCAGCGG+AGG + Chr1:99258724-99258743 None:intergenic 60.0%
! GTGTTGGTGTCCCTGCCTTG+CGG - Chr1:99259338-99259357 MsG0180006042.01.T01:CDS 60.0%
AGTGCTCGTGCCGCAAGGCA+GGG + Chr1:99259351-99259370 None:intergenic 65.0%
GCAGCGGAGGACGAAGACGA+CGG + Chr1:99258711-99258730 None:intergenic 65.0%
GTCCCCGCAGTGGTATGGGT+TGG - Chr1:99262900-99262919 MsG0180006042.01.T01:intron 65.0%
CAGTGCTCGTGCCGCAAGGC+AGG + Chr1:99259352-99259371 None:intergenic 70.0%
CTGCCTTGCGGCACGAGCAC+TGG - Chr1:99259350-99259369 MsG0180006042.01.T01:CDS 70.0%
TGAGGGAGGAGAGTCCGGCG+AGG + Chr1:99258768-99258787 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr1 gene 99258699 99263473 99258699 ID=MsG0180006042.01;
Chr1 mRNA 99258699 99263473 99258699 ID=MsG0180006042.01.T01;Parent=MsG0180006042.01
Chr1 CDS 99258699 99258721 99258699 ID=MsG0180006042.01.T01.cds;Parent=MsG0180006042.01.T01
Chr1 CDS 99258822 99258936 99258822 ID=MsG0180006042.01.T01.cds;Parent=MsG0180006042.01.T01
Chr1 CDS 99259040 99259084 99259040 ID=MsG0180006042.01.T01.cds;Parent=MsG0180006042.01.T01
Chr1 CDS 99259307 99259384 99259307 ID=MsG0180006042.01.T01.cds;Parent=MsG0180006042.01.T01
Chr1 CDS 99259472 99259579 99259472 ID=MsG0180006042.01.T01.cds;Parent=MsG0180006042.01.T01
Chr1 CDS 99259677 99259751 99259677 ID=MsG0180006042.01.T01.cds;Parent=MsG0180006042.01.T01
Chr1 CDS 99259847 99259938 99259847 ID=MsG0180006042.01.T01.cds;Parent=MsG0180006042.01.T01
Chr1 CDS 99260822 99260942 99260822 ID=MsG0180006042.01.T01.cds;Parent=MsG0180006042.01.T01
Chr1 CDS 99261235 99261327 99261235 ID=MsG0180006042.01.T01.cds;Parent=MsG0180006042.01.T01
Chr1 CDS 99261838 99261922 99261838 ID=MsG0180006042.01.T01.cds;Parent=MsG0180006042.01.T01
Chr1 CDS 99263298 99263473 99263298 ID=MsG0180006042.01.T01.cds;Parent=MsG0180006042.01.T01
Gene Sequence

>MsG0180006042.01.T01

ATGGCAGCTCCGTCGTCTTCGTCCTCCGCTGCTCCATCAACAACCGCCCCTCAAACAACGCTTCTTCCTCGCCGGACTCTCCTCCCTCACCTTCGTCTCACTTGTCTTCACCGATGTGTGGTTCAACACGATTGTCGTTGGAACTGCGGTGGTTGTTTTCACACCACAACGCTGAAATATGTACGGAGAGAGAAAACAATTCTGTCAGTTGAAGATATCATTGCTTTGATTGGTGATAAGTGTGATGGAGTTATTGGACAGGAGGGCAAAGCTTTCAGTAATATGGCTGTTGGTTATAATAATGTTGATGTCAATGCTGCAAACAAATATGGTGTTGCTGTTGGAAATACTCCTGGAGTTCTCACAGAGACTACGGCAGAGCTTGCAGCTTCACTGACTTTGGCAGCTGCTAGAAGGATAGTTGAGGCAGATGAGTTCATGAGGCAGGATTATATGATGGCTGGCTACCTCATCTCATATGGTGCTTTCTTAAAGGCAAATGGTGAAACACCAGTAACTTGGAAAAGGGCAGCATCCATGGACGAGGTTCTCCAAGAGGCAGATATAATTAGTCTTCATCCTATCTTGGATAAAACCACTTACCACCTCGTCAACAAGGAAAGACTCGCCAAGATGAAGAAGGAAGCAATTCTTATAAACTGCAGTAGAGGACCTGTTATTGATGAAGTTGCACTTGTGGAGCATTTAAAAGAAAATCCAATGTTTCGCGTAGGCCTTGATGTGTTTGAGGATGAGCCCTACATGAAACCTGGACTTGCAGAGTTGAAGAATGCCGTTGTAGTACCACACATTGCTTCTGCTTCCAAGTGGACTCGTGAGGGAATGGCAACGCTAGCAGCTCTAAATGTGCTGGGCAAGATCAAGGGCTACCCAGTATGGTTTGATGCCAATAGGGTGGAGCCATTTCTTGATGAAAATGCTCAACCTCCAGCTGCATGCCCAAGCATTGTTAATGCAAAAGCCCTGAGTTTACCAGTTTCAAAGCTGTAG

Protein sequence

>MsG0180006042.01.T01

MAAPSSSSSAAPSTTAPQTTLLPRRTLLPHLRLTCLHRCVVQHDCRWNCGGCFHTTTLKYVRREKTILSVEDIIALIGDKCDGVIGQEGKAFSNMAVGYNNVDVNAANKYGVAVGNTPGVLTETTAELAASLTLAAARRIVEADEFMRQDYMMAGYLISYGAFLKANGETPVTWKRAASMDEVLQEADIISLHPILDKTTYHLVNKERLAKMKKEAILINCSRGPVIDEVALVEHLKENPMFRVGLDVFEDEPYMKPGLAELKNAVVVPHIASASKWTREGMATLAALNVLGKIKGYPVWFDANRVEPFLDENAQPPAACPSIVNAKALSLPVSKL*