Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180006115.01.T01 | XP_024628447.1 | 82.5 | 240 | 32 | 2 | 1 | 240 | 1 | 230 | 3.74E-139 | 399 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180006115.01.T01 | Q9FMW4 | 44.589 | 231 | 103 | 5 | 2 | 226 | 3 | 214 | 6.80E-61 | 193 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180006115.01.T01 | A0A396JWE4 | 82.500 | 240 | 32 | 2 | 1 | 240 | 1 | 230 | 1.79e-139 | 399 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180005371.01 | MsG0180006115.01 | 0.830154 | 3.445898e-55 | 3.600939e-52 |
| MsG0180006115.01 | MsG0380017266.01 | -0.800366 | 1.491023e-48 | 6.929998e-46 |
| MsG0180006115.01 | MsG0580024241.01 | 0.936011 | 3.430267e-97 | 2.857131e-92 |
| MsG0180006115.01 | MsG0580029640.01 | 0.800721 | 1.262082e-48 | 5.918727e-46 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180006115.01.T01 | MTR_1g115130 | 77.083 | 240 | 21 | 1 | 1 | 240 | 1 | 206 | 1.52e-131 | 369 |
| MsG0180006115.01.T01 | MTR_1g114750 | 76.170 | 235 | 43 | 3 | 1 | 232 | 1 | 225 | 5.24e-126 | 356 |
| MsG0180006115.01.T01 | MTR_1g114690 | 74.561 | 228 | 48 | 2 | 1 | 228 | 1 | 218 | 5.43e-121 | 343 |
| MsG0180006115.01.T01 | MTR_1g114690 | 73.684 | 228 | 50 | 2 | 1 | 228 | 1 | 218 | 1.45e-119 | 340 |
| MsG0180006115.01.T01 | MTR_1g114690 | 64.122 | 262 | 50 | 3 | 1 | 228 | 1 | 252 | 2.03e-112 | 323 |
| MsG0180006115.01.T01 | MTR_1g114690 | 69.886 | 176 | 43 | 2 | 1 | 176 | 1 | 166 | 1.89e-79 | 238 |
| MsG0180006115.01.T01 | MTR_1g033750 | 52.361 | 233 | 83 | 5 | 8 | 228 | 7 | 223 | 2.04e-74 | 225 |
| MsG0180006115.01.T01 | MTR_1g114640 | 51.304 | 230 | 103 | 4 | 1 | 229 | 1 | 222 | 1.38e-70 | 216 |
| MsG0180006115.01.T01 | MTR_8g100065 | 46.237 | 186 | 95 | 2 | 44 | 228 | 4 | 185 | 1.08e-52 | 169 |
| MsG0180006115.01.T01 | MTR_8g100065 | 50.299 | 167 | 78 | 2 | 63 | 228 | 45 | 207 | 3.11e-52 | 168 |
| MsG0180006115.01.T01 | MTR_6g077990 | 46.857 | 175 | 89 | 1 | 55 | 229 | 29 | 199 | 1.76e-49 | 161 |
| MsG0180006115.01.T01 | MTR_6g077990 | 46.857 | 175 | 89 | 1 | 55 | 229 | 30 | 200 | 1.79e-49 | 161 |
| MsG0180006115.01.T01 | MTR_6g077990 | 52.000 | 150 | 72 | 0 | 80 | 229 | 8 | 157 | 3.67e-49 | 159 |
| MsG0180006115.01.T01 | MTR_1g114640 | 49.438 | 178 | 81 | 4 | 1 | 177 | 1 | 170 | 3.20e-44 | 147 |
| MsG0180006115.01.T01 | MTR_1g114680 | 60.360 | 111 | 44 | 0 | 118 | 228 | 53 | 163 | 8.04e-42 | 141 |
| MsG0180006115.01.T01 | MTR_7g083570 | 37.838 | 148 | 92 | 0 | 80 | 227 | 129 | 276 | 5.90e-32 | 118 |
| MsG0180006115.01.T01 | MTR_3g100750 | 35.616 | 146 | 93 | 1 | 80 | 225 | 111 | 255 | 9.72e-31 | 114 |
| MsG0180006115.01.T01 | MTR_8g069110 | 35.616 | 146 | 93 | 1 | 80 | 225 | 123 | 267 | 1.76e-29 | 112 |
| MsG0180006115.01.T01 | MTR_8g100065 | 42.424 | 132 | 71 | 2 | 42 | 172 | 2 | 129 | 3.44e-28 | 104 |
| MsG0180006115.01.T01 | MTR_8g100065 | 46.154 | 117 | 58 | 2 | 57 | 172 | 39 | 151 | 6.83e-28 | 104 |
| MsG0180006115.01.T01 | MTR_6g077990 | 42.500 | 120 | 65 | 1 | 55 | 174 | 29 | 144 | 6.01e-26 | 99.4 |
| MsG0180006115.01.T01 | MTR_2g076350 | 32.597 | 181 | 114 | 3 | 51 | 227 | 51 | 227 | 2.50e-23 | 94.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180006115.01.T01 | AT5G23370 | 44.589 | 231 | 103 | 5 | 2 | 226 | 3 | 214 | 6.93e-62 | 193 |
| MsG0180006115.01.T01 | AT5G08350 | 58.219 | 146 | 61 | 0 | 81 | 226 | 68 | 213 | 1.92e-58 | 185 |
| MsG0180006115.01.T01 | AT5G23350 | 56.164 | 146 | 64 | 0 | 81 | 226 | 69 | 214 | 2.26e-57 | 182 |
| MsG0180006115.01.T01 | AT5G23360 | 42.291 | 227 | 108 | 4 | 2 | 227 | 3 | 207 | 1.76e-55 | 177 |
| MsG0180006115.01.T01 | AT5G13200 | 40.136 | 147 | 88 | 0 | 80 | 226 | 115 | 261 | 2.54e-34 | 124 |
| MsG0180006115.01.T01 | AT4G01600 | 35.119 | 168 | 104 | 2 | 59 | 225 | 22 | 185 | 4.19e-31 | 114 |
| MsG0180006115.01.T01 | AT4G01600 | 32.864 | 213 | 132 | 5 | 18 | 225 | 18 | 224 | 6.47e-31 | 114 |
| MsG0180006115.01.T01 | AT4G01600 | 36.735 | 147 | 92 | 1 | 80 | 225 | 73 | 219 | 9.08e-30 | 111 |
| MsG0180006115.01.T01 | AT1G28200 | 33.136 | 169 | 109 | 3 | 60 | 225 | 87 | 254 | 2.03e-28 | 108 |
| MsG0180006115.01.T01 | AT1G28200 | 33.136 | 169 | 109 | 3 | 60 | 225 | 87 | 254 | 2.03e-28 | 108 |
| MsG0180006115.01.T01 | AT2G22475 | 33.113 | 151 | 100 | 1 | 80 | 230 | 147 | 296 | 4.81e-27 | 105 |
| MsG0180006115.01.T01 | AT5G13200 | 39.362 | 94 | 57 | 0 | 80 | 173 | 115 | 208 | 1.25e-17 | 79.0 |
| MsG0180006115.01.T01 | AT2G22475 | 32.000 | 100 | 67 | 1 | 80 | 179 | 147 | 245 | 4.07e-11 | 61.6 |
Find 49 sgRNAs with CRISPR-Local
Find 88 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTATTAGAAGTTTAAGTTTC+AGG | 0.165322 | 1:+100303255 | MsG0180006115.01.T01:three_prime_UTR |
| AGGGGTACTCACCATGTTCT+TGG | 0.305997 | 1:-100302115 | None:intergenic |
| TTTACCTTTGCTTTGGTGTT+TGG | 0.340255 | 1:-100301939 | None:intergenic |
| CCCTTCATTGACCTCAAAAT+AGG | 0.349137 | 1:-100303170 | None:intergenic |
| ATGAAGGGAGATTATTGTTA+TGG | 0.350767 | 1:+100303185 | MsG0180006115.01.T01:three_prime_UTR |
| ATTCATCATGAGCTAGTTGT+TGG | 0.383491 | 1:+100301833 | MsG0180006115.01.T01:CDS |
| TAAAGAGGACGTTGAGCTTA+GGG | 0.393383 | 1:+100302312 | MsG0180006115.01.T01:CDS |
| CCTTTGCTTTGGTGTTTGGT+TGG | 0.415781 | 1:-100301935 | None:intergenic |
| GTTCAGGACATACCTTATAT+CGG | 0.420445 | 1:-100302547 | None:intergenic |
| ATAAAGAGGACGTTGAGCTT+AGG | 0.430032 | 1:+100302311 | MsG0180006115.01.T01:CDS |
| AATGCGTAGGATCCGATATA+AGG | 0.437431 | 1:+100302535 | MsG0180006115.01.T01:CDS |
| TGAAACTGATGATACATGAT+TGG | 0.440410 | 1:-100301860 | None:intergenic |
| CGAAGATATGCTTTGAAATG+AGG | 0.444217 | 1:+100302904 | MsG0180006115.01.T01:three_prime_UTR |
| ATGTTATTATGCTCTAATAG+TGG | 0.463690 | 1:-100302831 | None:intergenic |
| TGTTATCTCTCCACCACATC+CGG | 0.474249 | 1:+100302425 | MsG0180006115.01.T01:CDS |
| CCTCTTCATCTCCAATGAAA+AGG | 0.477437 | 1:+100302463 | MsG0180006115.01.T01:CDS |
| ACCACATCCGGTCCTCTAGC+TGG | 0.484625 | 1:+100302437 | MsG0180006115.01.T01:CDS |
| CTTTGAAATGAGGGACTTCG+TGG | 0.487322 | 1:+100302914 | MsG0180006115.01.T01:three_prime_UTR |
| TATTGTTCTCTCACTGCAGA+AGG | 0.510226 | 1:-100302489 | None:intergenic |
| GAATGAATACTCTGCCAATA+CGG | 0.512381 | 1:-100303129 | None:intergenic |
| GGCTGAATTACTTATGTGCA+TGG | 0.520574 | 1:+100303276 | MsG0180006115.01.T01:three_prime_UTR |
| CTTGATATTCTTCAGTGGAA+TGG | 0.537049 | 1:-100302642 | None:intergenic |
| GAAGATATGCTTTGAAATGA+GGG | 0.540103 | 1:+100302905 | MsG0180006115.01.T01:three_prime_UTR |
| TGTTATGGTAGAAAACAAGA+TGG | 0.540307 | 1:+100303200 | MsG0180006115.01.T01:three_prime_UTR |
| ACCAGCTAGAGGACCGGATG+TGG | 0.545746 | 1:-100302438 | None:intergenic |
| GGGGCTCAAATTCTTCAAGT+AGG | 0.547691 | 1:+100302332 | MsG0180006115.01.T01:CDS |
| GAGGAGACCAGCTAGAGGAC+CGG | 0.553573 | 1:-100302444 | None:intergenic |
| TTAGTGTGAGAGAAGGAGAG+AGG | 0.554677 | 1:+100302384 | MsG0180006115.01.T01:CDS |
| AGCTAGAGGACCGGATGTGG+TGG | 0.559552 | 1:-100302435 | None:intergenic |
| AACTAGCTCATGATGAATTG+AGG | 0.562665 | 1:-100301828 | None:intergenic |
| ACATATCTAAAACAATAAAG+AGG | 0.563370 | 1:+100302297 | MsG0180006115.01.T01:CDS |
| ATGGTTCATTCATATAGTAT+CGG | 0.565704 | 1:+100302998 | MsG0180006115.01.T01:three_prime_UTR |
| ATAAAAGTCTTCAATCAGAA+AGG | 0.566655 | 1:+100302509 | MsG0180006115.01.T01:CDS |
| AACTTTCAAATATCTCAAGC+AGG | 0.569428 | 1:+100302772 | MsG0180006115.01.T01:CDS |
| TGTTAATATAGAGACCGTAT+TGG | 0.573700 | 1:+100303115 | MsG0180006115.01.T01:three_prime_UTR |
| ATATTAACAGTCACTGCTTG+CGG | 0.587455 | 1:-100303101 | None:intergenic |
| CCCGTTAAAATAGATGCACA+TGG | 0.598355 | 1:+100302979 | MsG0180006115.01.T01:three_prime_UTR |
| GCTCAAATTCTTCAAGTAGG+TGG | 0.599531 | 1:+100302335 | MsG0180006115.01.T01:CDS |
| ATCAGAAAGGTCAAATGCGT+AGG | 0.606952 | 1:+100302522 | MsG0180006115.01.T01:CDS |
| AATTCTTCAAGTAGGTGGAG+TGG | 0.608118 | 1:+100302340 | MsG0180006115.01.T01:CDS |
| TGTTGATGAAAGAGATCACT+CGG | 0.612401 | 1:+100303057 | MsG0180006115.01.T01:three_prime_UTR |
| ACACACTTGATATTCTTCAG+TGG | 0.629365 | 1:-100302647 | None:intergenic |
| TGGATATTGAATTTGACAAG+AGG | 0.629980 | 1:-100301915 | None:intergenic |
| AAAGAGGACGTTGAGCTTAG+GGG | 0.634036 | 1:+100302313 | MsG0180006115.01.T01:CDS |
| CCAACCAAACACCAAAGCAA+AGG | 0.645616 | 1:+100301935 | MsG0180006115.01.T01:CDS |
| ATGAAGAGGAGACCAGCTAG+AGG | 0.648963 | 1:-100302449 | None:intergenic |
| ACACAAAGAGTCCAAGAACA+TGG | 0.649976 | 1:+100302104 | MsG0180006115.01.T01:CDS |
| AATTCCAACCAGCAAAAGAG+CGG | 0.656787 | 1:+100302062 | MsG0180006115.01.T01:CDS |
| CATTCATCGACAGAGAAGAG+AGG | 0.697110 | 1:+100303147 | MsG0180006115.01.T01:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTTATAAAAGAATTGAA+CGG | - | Chr1:100303315-100303334 | None:intergenic | 10.0% |
| !!! | TGAAAGTTTTTTTATATTTT+AGG | - | Chr1:100302760-100302779 | None:intergenic | 10.0% |
| !! | ACATAACAAATATTGGATTA+GGG | - | Chr1:100302614-100302633 | None:intergenic | 20.0% |
| !! | CATAAATTGTACCATATTAT+TGG | - | Chr1:100302160-100302179 | None:intergenic | 20.0% |
| !!! | ACATATCTAAAACAATAAAG+AGG | + | Chr1:100302297-100302316 | MsG0180006115.01.T01:CDS | 20.0% |
| !!! | CTAATTTCATTAAGTATTGA+TGG | + | Chr1:100302000-100302019 | MsG0180006115.01.T01:intron | 20.0% |
| ! | ATAAAAGTCTTCAATCAGAA+AGG | + | Chr1:100302509-100302528 | MsG0180006115.01.T01:CDS | 25.0% |
| ! | ATATAGATACCACATACAAA+AGG | - | Chr1:100302194-100302213 | None:intergenic | 25.0% |
| ! | ATGGTTCATTCATATAGTAT+CGG | + | Chr1:100302998-100303017 | MsG0180006115.01.T01:three_prime_UTR | 25.0% |
| ! | ATGTTATTATGCTCTAATAG+TGG | - | Chr1:100302834-100302853 | None:intergenic | 25.0% |
| ! | CACATAACAAATATTGGATT+AGG | - | Chr1:100302615-100302634 | None:intergenic | 25.0% |
| ! | TATATGTACTTACTTAGTTC+AGG | - | Chr1:100302566-100302585 | None:intergenic | 25.0% |
| !! | ATGTTCATGATTCTTTTAAC+AGG | - | Chr1:100301975-100301994 | None:intergenic | 25.0% |
| !! | ATGTTTATGTACTTTTGTGT+TGG | - | Chr1:100302698-100302717 | None:intergenic | 25.0% |
| !! | CTATTAGAAGTTTAAGTTTC+AGG | + | Chr1:100303255-100303274 | MsG0180006115.01.T01:three_prime_UTR | 25.0% |
| AACTTTCAAATATCTCAAGC+AGG | + | Chr1:100302772-100302791 | MsG0180006115.01.T01:CDS | 30.0% | |
| ATGAAGGGAGATTATTGTTA+TGG | + | Chr1:100303185-100303204 | MsG0180006115.01.T01:three_prime_UTR | 30.0% | |
| TACCACATACAAAAGGAAAA+TGG | - | Chr1:100302187-100302206 | None:intergenic | 30.0% | |
| TGAAAAATTTCAGTGAGACT+CGG | + | Chr1:100302269-100302288 | MsG0180006115.01.T01:intron | 30.0% | |
| TGAAACTGATGATACATGAT+TGG | - | Chr1:100301863-100301882 | None:intergenic | 30.0% | |
| TGGATATTGAATTTGACAAG+AGG | - | Chr1:100301918-100301937 | None:intergenic | 30.0% | |
| TGTTAATATAGAGACCGTAT+TGG | + | Chr1:100303115-100303134 | MsG0180006115.01.T01:three_prime_UTR | 30.0% | |
| TGTTATGGTAGAAAACAAGA+TGG | + | Chr1:100303200-100303219 | MsG0180006115.01.T01:three_prime_UTR | 30.0% | |
| ! | AACCATTTTCCTTTTGTATG+TGG | + | Chr1:100302182-100302201 | MsG0180006115.01.T01:intron | 30.0% |
| ! | ACAAAGTTTTACCTTTGCTT+TGG | - | Chr1:100301949-100301968 | None:intergenic | 30.0% |
| ! | TAGATGGGTTTCCAATAATA+TGG | + | Chr1:100302146-100302165 | MsG0180006115.01.T01:intron | 30.0% |
| !! | ACCATGTGCATCTATTTTAA+CGG | - | Chr1:100302983-100303002 | None:intergenic | 30.0% |
| !! | ATCCAATATTTGTTATGTGC+AGG | + | Chr1:100302616-100302635 | MsG0180006115.01.T01:intron | 30.0% |
| !! | GAAGATATGCTTTGAAATGA+GGG | + | Chr1:100302905-100302924 | MsG0180006115.01.T01:three_prime_UTR | 30.0% |
| !!! | GATTTTGATTTCTGGCTTAT+GGG | + | Chr1:100302731-100302750 | MsG0180006115.01.T01:CDS | 30.0% |
| !!! | TATTTTAACGGGTCAATCTT+GGG | - | Chr1:100302971-100302990 | None:intergenic | 30.0% |
| AAACCCATCTAAGTCTTACA+GGG | - | Chr1:100302137-100302156 | None:intergenic | 35.0% | |
| AACTAGCTCATGATGAATTG+AGG | - | Chr1:100301831-100301850 | None:intergenic | 35.0% | |
| ACACACTTGATATTCTTCAG+TGG | - | Chr1:100302650-100302669 | None:intergenic | 35.0% | |
| ATATTAACAGTCACTGCTTG+CGG | - | Chr1:100303104-100303123 | None:intergenic | 35.0% | |
| ATTCATCATGAGCTAGTTGT+TGG | + | Chr1:100301833-100301852 | MsG0180006115.01.T01:CDS | 35.0% | |
| CACCTGCACATAACAAATAT+TGG | - | Chr1:100302621-100302640 | None:intergenic | 35.0% | |
| CTTGATATTCTTCAGTGGAA+TGG | - | Chr1:100302645-100302664 | None:intergenic | 35.0% | |
| GAATGAATACTCTGCCAATA+CGG | - | Chr1:100303132-100303151 | None:intergenic | 35.0% | |
| GTTCAGGACATACCTTATAT+CGG | - | Chr1:100302550-100302569 | None:intergenic | 35.0% | |
| ! | TGTTGATGAAAGAGATCACT+CGG | + | Chr1:100303057-100303076 | MsG0180006115.01.T01:three_prime_UTR | 35.0% |
| !! | CAATATTTGTTATGTGCAGG+TGG | + | Chr1:100302619-100302638 | MsG0180006115.01.T01:intron | 35.0% |
| !! | CGAAGATATGCTTTGAAATG+AGG | + | Chr1:100302904-100302923 | MsG0180006115.01.T01:three_prime_UTR | 35.0% |
| !! | TTTACCTTTGCTTTGGTGTT+TGG | - | Chr1:100301942-100301961 | None:intergenic | 35.0% |
| !!! | CAGAAGACGATTTTGATTTC+TGG | + | Chr1:100302723-100302742 | MsG0180006115.01.T01:CDS | 35.0% |
| !!! | CAGTATTTTAGTGTGAGAGA+AGG | + | Chr1:100302377-100302396 | MsG0180006115.01.T01:CDS | 35.0% |
| !!! | CCATGTGCATCTATTTTAAC+GGG | - | Chr1:100302982-100303001 | None:intergenic | 35.0% |
| !!! | CCTATTTTGAGGTCAATGAA+GGG | + | Chr1:100303170-100303189 | MsG0180006115.01.T01:three_prime_UTR | 35.0% |
| !!! | CGATTTTGATTTCTGGCTTA+TGG | + | Chr1:100302730-100302749 | MsG0180006115.01.T01:CDS | 35.0% |
| !!! | CTATTTTAACGGGTCAATCT+TGG | - | Chr1:100302972-100302991 | None:intergenic | 35.0% |
| AACCCATCTAAGTCTTACAG+GGG | - | Chr1:100302136-100302155 | None:intergenic | 40.0% | |
| AATGCGTAGGATCCGATATA+AGG | + | Chr1:100302535-100302554 | MsG0180006115.01.T01:CDS | 40.0% | |
| AATTCCAACCAGCAAAAGAG+CGG | + | Chr1:100302062-100302081 | MsG0180006115.01.T01:CDS | 40.0% | |
| AATTCTTCAAGTAGGTGGAG+TGG | + | Chr1:100302340-100302359 | MsG0180006115.01.T01:CDS | 40.0% | |
| ACACAAAGAGTCCAAGAACA+TGG | + | Chr1:100302104-100302123 | MsG0180006115.01.T01:CDS | 40.0% | |
| ATAAAGAGGACGTTGAGCTT+AGG | + | Chr1:100302311-100302330 | MsG0180006115.01.T01:CDS | 40.0% | |
| ATCAGAAAGGTCAAATGCGT+AGG | + | Chr1:100302522-100302541 | MsG0180006115.01.T01:CDS | 40.0% | |
| CCCGTTAAAATAGATGCACA+TGG | + | Chr1:100302979-100302998 | MsG0180006115.01.T01:three_prime_UTR | 40.0% | |
| CCCTTCATTGACCTCAAAAT+AGG | - | Chr1:100303173-100303192 | None:intergenic | 40.0% | |
| CCTCTTCATCTCCAATGAAA+AGG | + | Chr1:100302463-100302482 | MsG0180006115.01.T01:CDS | 40.0% | |
| GAAACCCATCTAAGTCTTAC+AGG | - | Chr1:100302138-100302157 | None:intergenic | 40.0% | |
| GCTCAAATTCTTCAAGTAGG+TGG | + | Chr1:100302335-100302354 | MsG0180006115.01.T01:CDS | 40.0% | |
| GGCTGAATTACTTATGTGCA+TGG | + | Chr1:100303276-100303295 | MsG0180006115.01.T01:three_prime_UTR | 40.0% | |
| TAAAGAGGACGTTGAGCTTA+GGG | + | Chr1:100302312-100302331 | MsG0180006115.01.T01:CDS | 40.0% | |
| TACCCCTGTAAGACTTAGAT+GGG | + | Chr1:100302131-100302150 | MsG0180006115.01.T01:intron | 40.0% | |
| TATTGTTCTCTCACTGCAGA+AGG | - | Chr1:100302492-100302511 | None:intergenic | 40.0% | |
| ! | CCTTTTCATTGGAGATGAAG+AGG | - | Chr1:100302466-100302485 | None:intergenic | 40.0% |
| !!! | GCCTATTTTGAGGTCAATGA+AGG | + | Chr1:100303169-100303188 | MsG0180006115.01.T01:three_prime_UTR | 40.0% |
| AAAGAGGACGTTGAGCTTAG+GGG | + | Chr1:100302313-100302332 | MsG0180006115.01.T01:CDS | 45.0% | |
| CATTCATCGACAGAGAAGAG+AGG | + | Chr1:100303147-100303166 | MsG0180006115.01.T01:three_prime_UTR | 45.0% | |
| CCAACCAAACACCAAAGCAA+AGG | + | Chr1:100301935-100301954 | MsG0180006115.01.T01:CDS | 45.0% | |
| GGGGCTCAAATTCTTCAAGT+AGG | + | Chr1:100302332-100302351 | MsG0180006115.01.T01:CDS | 45.0% | |
| GTACCCCTGTAAGACTTAGA+TGG | + | Chr1:100302130-100302149 | MsG0180006115.01.T01:intron | 45.0% | |
| TGCTCAAGTCAACTAGCAAG+TGG | - | Chr1:100302227-100302246 | None:intergenic | 45.0% | |
| TGTTATCTCTCCACCACATC+CGG | + | Chr1:100302425-100302444 | MsG0180006115.01.T01:CDS | 45.0% | |
| TTAGTGTGAGAGAAGGAGAG+AGG | + | Chr1:100302384-100302403 | MsG0180006115.01.T01:CDS | 45.0% | |
| ! | GAGAAGAGAGGCCTATTTTG+AGG | + | Chr1:100303159-100303178 | MsG0180006115.01.T01:three_prime_UTR | 45.0% |
| ! | GCAGAAGGCAACCTTTTCAT+TGG | - | Chr1:100302477-100302496 | None:intergenic | 45.0% |
| !! | CCTTTGCTTTGGTGTTTGGT+TGG | - | Chr1:100301938-100301957 | None:intergenic | 45.0% |
| !! | CTTTGAAATGAGGGACTTCG+TGG | + | Chr1:100302914-100302933 | MsG0180006115.01.T01:three_prime_UTR | 45.0% |
| ATGAAGAGGAGACCAGCTAG+AGG | - | Chr1:100302452-100302471 | None:intergenic | 50.0% | |
| !! | AGGGGTACTCACCATGTTCT+TGG | - | Chr1:100302118-100302137 | None:intergenic | 50.0% |
| ! | CTGTTCTGCCGCTCTTTTGC+TGG | - | Chr1:100302073-100302092 | None:intergenic | 55.0% |
| ! | TCTGCCGCTCTTTTGCTGGT+TGG | - | Chr1:100302069-100302088 | None:intergenic | 55.0% |
| ACCACATCCGGTCCTCTAGC+TGG | + | Chr1:100302437-100302456 | MsG0180006115.01.T01:CDS | 60.0% | |
| ACCAGCTAGAGGACCGGATG+TGG | - | Chr1:100302441-100302460 | None:intergenic | 60.0% | |
| AGCTAGAGGACCGGATGTGG+TGG | - | Chr1:100302438-100302457 | None:intergenic | 60.0% | |
| GAGGAGACCAGCTAGAGGAC+CGG | - | Chr1:100302447-100302466 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr1 | gene | 100301821 | 100303342 | 100301821 | ID=MsG0180006115.01;Name=MsG0180006115.01 |
| Chr1 | mRNA | 100301821 | 100303342 | 100301821 | ID=MsG0180006115.01.T01;Parent=MsG0180006115.01;Name=MsG0180006115.01.T01;_AED=0.47;_eAED=0.48;_QI=0|0.33|0.5|1|0.66|0.5|4|495|240 |
| Chr1 | exon | 100301821 | 100301974 | 100301821 | ID=MsG0180006115.01.T01:exon:24974;Parent=MsG0180006115.01.T01 |
| Chr1 | exon | 100302054 | 100302137 | 100302054 | ID=MsG0180006115.01.T01:exon:24975;Parent=MsG0180006115.01.T01 |
| Chr1 | exon | 100302282 | 100302556 | 100302282 | ID=MsG0180006115.01.T01:exon:24976;Parent=MsG0180006115.01.T01 |
| Chr1 | exon | 100302638 | 100303342 | 100302638 | ID=MsG0180006115.01.T01:exon:24977;Parent=MsG0180006115.01.T01 |
| Chr1 | CDS | 100301821 | 100301974 | 100301821 | ID=MsG0180006115.01.T01:cds;Parent=MsG0180006115.01.T01 |
| Chr1 | CDS | 100302054 | 100302137 | 100302054 | ID=MsG0180006115.01.T01:cds;Parent=MsG0180006115.01.T01 |
| Chr1 | CDS | 100302282 | 100302556 | 100302282 | ID=MsG0180006115.01.T01:cds;Parent=MsG0180006115.01.T01 |
| Chr1 | CDS | 100302638 | 100302847 | 100302638 | ID=MsG0180006115.01.T01:cds;Parent=MsG0180006115.01.T01 |
| Chr1 | three_prime_UTR | 100302848 | 100303342 | 100302848 | ID=MsG0180006115.01.T01:three_prime_utr;Parent=MsG0180006115.01.T01 |
| Gene Sequence |
| Protein sequence |
