Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024241.01.T01 | XP_024628447.1 | 82.5 | 240 | 32 | 2 | 1 | 240 | 1 | 230 | 2.55E-139 | 400 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024241.01.T01 | Q9FMW4 | 44.589 | 231 | 103 | 5 | 2 | 226 | 3 | 214 | 7.10E-61 | 193 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024241.01.T01 | A0A396JWE4 | 82.500 | 240 | 32 | 2 | 1 | 240 | 1 | 230 | 1.22e-139 | 400 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180000065.01 | MsG0580024241.01 | 0.804972 | 1.671240e-49 | 8.736746e-47 |
| MsG0180001006.01 | MsG0580024241.01 | 0.801431 | 9.033027e-49 | 4.313069e-46 |
| MsG0180001023.01 | MsG0580024241.01 | 0.828952 | 6.753622e-55 | 6.813642e-52 |
| MsG0180004320.01 | MsG0580024241.01 | 0.800008 | 1.763153e-48 | 8.120437e-46 |
| MsG0180005371.01 | MsG0580024241.01 | 0.855201 | 7.396215e-62 | 1.693944e-58 |
| MsG0180006023.01 | MsG0580024241.01 | 0.830961 | 2.186983e-55 | 2.339890e-52 |
| MsG0180006115.01 | MsG0580024241.01 | 0.936011 | 3.430267e-97 | 2.857131e-92 |
| MsG0280010614.01 | MsG0580024241.01 | 0.803800 | 2.931912e-49 | 1.487139e-46 |
| MsG0480020445.01 | MsG0580024241.01 | 0.844538 | 7.107133e-59 | 1.151031e-55 |
| MsG0480021350.01 | MsG0580024241.01 | 0.806555 | 7.771325e-50 | 4.230793e-47 |
| MsG0480022480.01 | MsG0580024241.01 | 0.811418 | 7.072767e-51 | 4.375753e-48 |
| MsG0580024241.01 | MsG0580024249.01 | 0.831762 | 1.388778e-55 | 1.521822e-52 |
| MsG0580024241.01 | MsG0580027129.01 | 0.817957 | 2.518744e-52 | 1.860508e-49 |
| MsG0580024241.01 | MsG0680030316.01 | 0.802935 | 4.429943e-49 | 2.197595e-46 |
| MsG0580024241.01 | MsG0680030436.01 | 0.810120 | 1.349660e-50 | 8.068169e-48 |
| MsG0580024241.01 | MsG0680033391.01 | 0.818708 | 1.702278e-52 | 1.283708e-49 |
| MsG0580024241.01 | MsG0680035777.01 | 0.815449 | 9.191745e-52 | 6.339249e-49 |
| MsG0580024241.01 | MsG0780038444.01 | 0.811368 | 7.250181e-51 | 4.479510e-48 |
| MsG0580024241.01 | MsG0780038495.01 | 0.804720 | 1.886260e-49 | 9.797377e-47 |
| MsG0580024241.01 | MsG0780038837.01 | 0.806057 | 9.895741e-50 | 5.319354e-47 |
| MsG0580024241.01 | MsG0780040488.01 | 0.819689 | 1.017816e-52 | 7.887337e-50 |
| MsG0580024241.01 | MsG0780040861.01 | 0.808939 | 2.420884e-50 | 1.402457e-47 |
| MsG0580024241.01 | MsG0880042811.01 | 0.816658 | 4.938031e-52 | 3.520195e-49 |
| MsG0580024241.01 | MsG0880045582.01 | 0.810932 | 9.015120e-51 | 5.506819e-48 |
| MsG0580024241.01 | MsG0880045583.01 | 0.819000 | 1.461318e-52 | 1.111082e-49 |
| MsG0580024241.01 | MsG0880045653.01 | 0.801930 | 7.136463e-49 | 3.450800e-46 |
| MsG0580024241.01 | MsG0880046762.01 | 0.809122 | 2.212073e-50 | 1.287882e-47 |
| MsG0580024241.01 | MsG0880047497.01 | 0.814614 | 1.408476e-51 | 9.495804e-49 |
| MsG0380016475.01 | MsG0580024241.01 | 0.810629 | 1.048444e-50 | 6.352183e-48 |
| MsG0380016765.01 | MsG0580024241.01 | 0.807242 | 5.563218e-50 | 3.082918e-47 |
| MsG0380017266.01 | MsG0580024241.01 | -0.817965 | 2.507978e-52 | 1.852951e-49 |
| MsG0380018009.01 | MsG0580024241.01 | 0.827977 | 1.160941e-54 | 1.138601e-51 |
| MsG0280007609.01 | MsG0580024241.01 | 0.832201 | 1.082212e-55 | 1.201092e-52 |
| MsG0280008885.01 | MsG0580024241.01 | 0.808744 | 2.664099e-50 | 1.535450e-47 |
| MsG0280008907.01 | MsG0580024241.01 | 0.807335 | 5.314892e-50 | 2.952444e-47 |
| MsG0280010389.01 | MsG0580024241.01 | 0.832445 | 9.417008e-56 | 1.052748e-52 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024241.01.T01 | MTR_1g115130 | 77.083 | 240 | 21 | 1 | 1 | 240 | 1 | 206 | 1.41e-131 | 369 |
| MsG0580024241.01.T01 | MTR_1g114750 | 76.596 | 235 | 42 | 3 | 1 | 232 | 1 | 225 | 5.43e-127 | 358 |
| MsG0580024241.01.T01 | MTR_1g114690 | 74.561 | 228 | 48 | 2 | 1 | 228 | 1 | 218 | 4.46e-121 | 343 |
| MsG0580024241.01.T01 | MTR_1g114690 | 73.684 | 228 | 50 | 2 | 1 | 228 | 1 | 218 | 1.04e-119 | 340 |
| MsG0580024241.01.T01 | MTR_1g114690 | 64.122 | 262 | 50 | 3 | 1 | 228 | 1 | 252 | 2.44e-112 | 323 |
| MsG0580024241.01.T01 | MTR_1g114690 | 69.886 | 176 | 43 | 2 | 1 | 176 | 1 | 166 | 1.50e-79 | 238 |
| MsG0580024241.01.T01 | MTR_1g033750 | 52.361 | 233 | 83 | 5 | 8 | 228 | 7 | 223 | 4.62e-74 | 224 |
| MsG0580024241.01.T01 | MTR_1g114640 | 51.304 | 230 | 103 | 4 | 1 | 229 | 1 | 222 | 1.33e-70 | 216 |
| MsG0580024241.01.T01 | MTR_8g100065 | 50.299 | 167 | 78 | 2 | 63 | 228 | 23 | 185 | 1.64e-52 | 168 |
| MsG0580024241.01.T01 | MTR_8g100065 | 50.299 | 167 | 78 | 2 | 63 | 228 | 45 | 207 | 3.40e-52 | 168 |
| MsG0580024241.01.T01 | MTR_6g077990 | 50.633 | 158 | 74 | 1 | 72 | 229 | 46 | 199 | 2.96e-49 | 160 |
| MsG0580024241.01.T01 | MTR_6g077990 | 50.633 | 158 | 74 | 1 | 72 | 229 | 47 | 200 | 2.98e-49 | 160 |
| MsG0580024241.01.T01 | MTR_6g077990 | 52.000 | 150 | 72 | 0 | 80 | 229 | 8 | 157 | 4.27e-49 | 159 |
| MsG0580024241.01.T01 | MTR_1g114640 | 49.438 | 178 | 81 | 4 | 1 | 177 | 1 | 170 | 4.24e-44 | 146 |
| MsG0580024241.01.T01 | MTR_1g114680 | 60.360 | 111 | 44 | 0 | 118 | 228 | 53 | 163 | 7.22e-42 | 141 |
| MsG0580024241.01.T01 | MTR_7g083570 | 37.838 | 148 | 92 | 0 | 80 | 227 | 129 | 276 | 6.36e-32 | 118 |
| MsG0580024241.01.T01 | MTR_3g100750 | 35.616 | 146 | 93 | 1 | 80 | 225 | 111 | 255 | 9.92e-31 | 114 |
| MsG0580024241.01.T01 | MTR_8g069110 | 35.616 | 146 | 93 | 1 | 80 | 225 | 123 | 267 | 1.74e-29 | 112 |
| MsG0580024241.01.T01 | MTR_8g100065 | 48.649 | 111 | 52 | 2 | 63 | 172 | 23 | 129 | 3.75e-28 | 104 |
| MsG0580024241.01.T01 | MTR_8g100065 | 48.649 | 111 | 52 | 2 | 63 | 172 | 45 | 151 | 7.05e-28 | 104 |
| MsG0580024241.01.T01 | MTR_6g077990 | 47.573 | 103 | 50 | 1 | 72 | 174 | 46 | 144 | 1.19e-25 | 98.6 |
| MsG0580024241.01.T01 | MTR_2g076350 | 32.597 | 181 | 114 | 3 | 51 | 227 | 51 | 227 | 2.71e-23 | 94.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024241.01.T01 | AT5G23370 | 44.589 | 231 | 103 | 5 | 2 | 226 | 3 | 214 | 7.24e-62 | 193 |
| MsG0580024241.01.T01 | AT5G08350 | 45.045 | 222 | 103 | 4 | 5 | 226 | 11 | 213 | 5.34e-59 | 186 |
| MsG0580024241.01.T01 | AT5G23350 | 56.164 | 146 | 64 | 0 | 81 | 226 | 69 | 214 | 2.18e-57 | 182 |
| MsG0580024241.01.T01 | AT5G23360 | 42.291 | 227 | 108 | 4 | 2 | 227 | 3 | 207 | 6.56e-56 | 178 |
| MsG0580024241.01.T01 | AT5G13200 | 40.136 | 147 | 88 | 0 | 80 | 226 | 115 | 261 | 2.19e-34 | 124 |
| MsG0580024241.01.T01 | AT4G01600 | 35.976 | 164 | 100 | 2 | 63 | 225 | 26 | 185 | 6.09e-31 | 113 |
| MsG0580024241.01.T01 | AT4G01600 | 35.976 | 164 | 100 | 2 | 63 | 225 | 65 | 224 | 9.80e-31 | 114 |
| MsG0580024241.01.T01 | AT4G01600 | 36.735 | 147 | 92 | 1 | 80 | 225 | 73 | 219 | 7.50e-30 | 111 |
| MsG0580024241.01.T01 | AT1G28200 | 33.136 | 169 | 109 | 3 | 60 | 225 | 87 | 254 | 1.29e-28 | 109 |
| MsG0580024241.01.T01 | AT1G28200 | 33.136 | 169 | 109 | 3 | 60 | 225 | 87 | 254 | 1.29e-28 | 109 |
| MsG0580024241.01.T01 | AT2G22475 | 33.113 | 151 | 100 | 1 | 80 | 230 | 147 | 296 | 4.47e-27 | 105 |
| MsG0580024241.01.T01 | AT5G13200 | 39.362 | 94 | 57 | 0 | 80 | 173 | 115 | 208 | 1.19e-17 | 79.0 |
| MsG0580024241.01.T01 | AT2G22475 | 32.000 | 100 | 67 | 1 | 80 | 179 | 147 | 245 | 3.91e-11 | 61.6 |
Find 49 sgRNAs with CRISPR-Local
Find 88 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTATTAGAAGTTTAAGTTTC+AGG | 0.165322 | 5:-2464523 | MsG0580024241.01.T01:three_prime_UTR |
| AGGGGTACTCACCATGTTCT+TGG | 0.305997 | 5:+2465663 | None:intergenic |
| TTTACCTTTGCTTTGGTGTT+TGG | 0.340255 | 5:+2465839 | None:intergenic |
| CCCTTCATTGACCTCAAAAT+AGG | 0.349137 | 5:+2464608 | None:intergenic |
| ATGAAGGGAGATTATTGTTA+TGG | 0.350767 | 5:-2464593 | MsG0580024241.01.T01:three_prime_UTR |
| ATTCATCATGAGCTAGTTGT+TGG | 0.383491 | 5:-2465945 | MsG0580024241.01.T01:CDS |
| TAAAGAGGACGTTGAGCTTA+GGG | 0.393383 | 5:-2465466 | MsG0580024241.01.T01:CDS |
| CCTTTGCTTTGGTGTTTGGT+TGG | 0.415781 | 5:+2465843 | None:intergenic |
| GTTCAGGACATACCTTATAT+CGG | 0.420445 | 5:+2465231 | None:intergenic |
| ATAAAGAGGACGTTGAGCTT+AGG | 0.430032 | 5:-2465467 | MsG0580024241.01.T01:CDS |
| AATGCGTAGGATCCGATATA+AGG | 0.437431 | 5:-2465243 | MsG0580024241.01.T01:intron |
| TGAAACTGATGATACATGAT+TGG | 0.440410 | 5:+2465918 | None:intergenic |
| CGAAGATATGCTTTGAAATG+AGG | 0.444217 | 5:-2464874 | MsG0580024241.01.T01:three_prime_UTR |
| ATGTTATTATGCTCTAATAG+TGG | 0.463690 | 5:+2464947 | None:intergenic |
| TGTTATCTCTCCACCACATC+CGG | 0.474249 | 5:-2465353 | MsG0580024241.01.T01:CDS |
| CCTCTTCATCTCCAATGAAA+AGG | 0.477437 | 5:-2465315 | MsG0580024241.01.T01:CDS |
| ACCACATCCGGTCCTCTAGC+TGG | 0.484625 | 5:-2465341 | MsG0580024241.01.T01:CDS |
| CTTTGAAATGAGGGACTTCG+TGG | 0.487322 | 5:-2464864 | MsG0580024241.01.T01:three_prime_UTR |
| TATTGTTCTCTCACTGCAGA+AGG | 0.510226 | 5:+2465289 | None:intergenic |
| GAATGAATACTCTGCCAATA+CGG | 0.512381 | 5:+2464649 | None:intergenic |
| GGCTGAATTACTTATGTGCA+TGG | 0.520574 | 5:-2464502 | MsG0580024241.01.T01:three_prime_UTR |
| CTTGATATTCTTCAGTGGAA+TGG | 0.537049 | 5:+2465136 | None:intergenic |
| GAAGATATGCTTTGAAATGA+GGG | 0.540103 | 5:-2464873 | MsG0580024241.01.T01:three_prime_UTR |
| TGTTATGGTAGAAAACAAGA+TGG | 0.540307 | 5:-2464578 | MsG0580024241.01.T01:three_prime_UTR |
| ACCAGCTAGAGGACCGGATG+TGG | 0.545746 | 5:+2465340 | None:intergenic |
| GGGGCTCAAATTCTTCAAGT+AGG | 0.547691 | 5:-2465446 | MsG0580024241.01.T01:CDS |
| GAGGAGACCAGCTAGAGGAC+CGG | 0.553573 | 5:+2465334 | None:intergenic |
| TTAGTGTGAGAGAAGGAGAG+AGG | 0.554677 | 5:-2465394 | MsG0580024241.01.T01:CDS |
| AGCTAGAGGACCGGATGTGG+TGG | 0.559552 | 5:+2465343 | None:intergenic |
| AACTAGCTCATGATGAATTG+AGG | 0.562665 | 5:+2465950 | None:intergenic |
| ACATATCTAAAACAATAAAG+AGG | 0.563370 | 5:-2465481 | MsG0580024241.01.T01:CDS |
| ATGGTTCATTCATATAGTAT+CGG | 0.565704 | 5:-2464780 | MsG0580024241.01.T01:three_prime_UTR |
| ATAAAAGTCTTCAATCAGAA+AGG | 0.566655 | 5:-2465269 | MsG0580024241.01.T01:CDS |
| AACTTTCAAATATCTCAAGC+AGG | 0.569428 | 5:-2465006 | MsG0580024241.01.T01:CDS |
| TGTTAATATAGAGACCGTAT+TGG | 0.573700 | 5:-2464663 | MsG0580024241.01.T01:three_prime_UTR |
| ATATTAACAGTCACTGCTTG+CGG | 0.587455 | 5:+2464677 | None:intergenic |
| CCCGTTAAAATAGATGCACA+TGG | 0.598355 | 5:-2464799 | MsG0580024241.01.T01:three_prime_UTR |
| GCTCAAATTCTTCAAGTAGG+TGG | 0.599531 | 5:-2465443 | MsG0580024241.01.T01:CDS |
| ATCAGAAAGGTCAAATGCGT+AGG | 0.606952 | 5:-2465256 | MsG0580024241.01.T01:CDS |
| AATTCTTCAAGTAGGTGGAG+TGG | 0.608118 | 5:-2465438 | MsG0580024241.01.T01:CDS |
| TGTTGATGAAAGAGATCACT+CGG | 0.612401 | 5:-2464721 | MsG0580024241.01.T01:three_prime_UTR |
| ACACACTTGATATTCTTCAG+TGG | 0.629365 | 5:+2465131 | None:intergenic |
| TGGATATTGAATTTGACAAG+AGG | 0.629980 | 5:+2465863 | None:intergenic |
| AAAGAGGACGTTGAGCTTAG+GGG | 0.634036 | 5:-2465465 | MsG0580024241.01.T01:CDS |
| AATTCCAACCAGCAAAAGCG+CGG | 0.640219 | 5:-2465716 | MsG0580024241.01.T01:CDS |
| CCAACCAAACACCAAAGCAA+AGG | 0.645616 | 5:-2465843 | MsG0580024241.01.T01:CDS |
| ATGAAGAGGAGACCAGCTAG+AGG | 0.648963 | 5:+2465329 | None:intergenic |
| ACACAAAGAGTCCAAGAACA+TGG | 0.649976 | 5:-2465674 | MsG0580024241.01.T01:CDS |
| CATTCATCGACAGAGAAGAG+AGG | 0.697110 | 5:-2464631 | MsG0580024241.01.T01:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTTATAAAAGAATTGAA+CGG | + | Chr5:2465952-2465971 | None:intergenic | 10.0% |
| !!! | TGAAAGTTTTTTTATATTTT+AGG | + | Chr5:2465397-2465416 | None:intergenic | 10.0% |
| !! | ACATAACAAATATTGGATTA+GGG | + | Chr5:2465251-2465270 | None:intergenic | 20.0% |
| !! | CATAAATTGTACCATATTAT+TGG | + | Chr5:2464797-2464816 | None:intergenic | 20.0% |
| !!! | ACATATCTAAAACAATAAAG+AGG | - | Chr5:2464934-2464953 | MsG0580024241.01.T01:exon | 20.0% |
| !!! | CTAATTTCATTAAGTATTGA+TGG | - | Chr5:2464637-2464656 | MsG0580024241.01.T01:three_prime_UTR | 20.0% |
| ! | ATAAAAGTCTTCAATCAGAA+AGG | - | Chr5:2465146-2465165 | MsG0580024241.01.T01:intron | 25.0% |
| ! | ATATAGATACCACATACAAA+AGG | + | Chr5:2464831-2464850 | None:intergenic | 25.0% |
| ! | ATGGTTCATTCATATAGTAT+CGG | - | Chr5:2465635-2465654 | MsG0580024241.01.T01:intron | 25.0% |
| ! | ATGTTATTATGCTCTAATAG+TGG | + | Chr5:2465471-2465490 | None:intergenic | 25.0% |
| ! | CACATAACAAATATTGGATT+AGG | + | Chr5:2465252-2465271 | None:intergenic | 25.0% |
| ! | TATATGTACTTACTTAGTTC+AGG | + | Chr5:2465203-2465222 | None:intergenic | 25.0% |
| !! | ATGTTCATGATTCTTTTAAC+AGG | + | Chr5:2464612-2464631 | None:intergenic | 25.0% |
| !! | ATGTTTATGTACTTTTGTGT+TGG | + | Chr5:2465335-2465354 | None:intergenic | 25.0% |
| !! | CTATTAGAAGTTTAAGTTTC+AGG | - | Chr5:2465892-2465911 | MsG0580024241.01.T01:CDS | 25.0% |
| AACTTTCAAATATCTCAAGC+AGG | - | Chr5:2465409-2465428 | MsG0580024241.01.T01:CDS | 30.0% | |
| ATGAAGGGAGATTATTGTTA+TGG | - | Chr5:2465822-2465841 | MsG0580024241.01.T01:intron | 30.0% | |
| TACCACATACAAAAGGAAAA+TGG | + | Chr5:2464824-2464843 | None:intergenic | 30.0% | |
| TGAAAAATTTCAGTGAGACT+CGG | - | Chr5:2464906-2464925 | MsG0580024241.01.T01:three_prime_UTR | 30.0% | |
| TGAAACTGATGATACATGAT+TGG | + | Chr5:2464500-2464519 | None:intergenic | 30.0% | |
| TGGATATTGAATTTGACAAG+AGG | + | Chr5:2464555-2464574 | None:intergenic | 30.0% | |
| TGTTAATATAGAGACCGTAT+TGG | - | Chr5:2465752-2465771 | MsG0580024241.01.T01:intron | 30.0% | |
| TGTTATGGTAGAAAACAAGA+TGG | - | Chr5:2465837-2465856 | MsG0580024241.01.T01:CDS | 30.0% | |
| ! | AACCATTTTCCTTTTGTATG+TGG | - | Chr5:2464819-2464838 | MsG0580024241.01.T01:three_prime_UTR | 30.0% |
| ! | ACAAAGTTTTACCTTTGCTT+TGG | + | Chr5:2464586-2464605 | None:intergenic | 30.0% |
| ! | TAGATGGGTTTCCAATAATA+TGG | - | Chr5:2464783-2464802 | MsG0580024241.01.T01:three_prime_UTR | 30.0% |
| !! | ACCATGTGCATCTATTTTAA+CGG | + | Chr5:2465620-2465639 | None:intergenic | 30.0% |
| !! | ATCCAATATTTGTTATGTGC+AGG | - | Chr5:2465253-2465272 | MsG0580024241.01.T01:CDS | 30.0% |
| !! | GAAGATATGCTTTGAAATGA+GGG | - | Chr5:2465542-2465561 | MsG0580024241.01.T01:intron | 30.0% |
| !!! | GATTTTGATTTCTGGCTTAT+GGG | - | Chr5:2465368-2465387 | MsG0580024241.01.T01:CDS | 30.0% |
| !!! | TATTTTAACGGGTCAATCTT+GGG | + | Chr5:2465608-2465627 | None:intergenic | 30.0% |
| AAACCCATCTAAGTCTTACA+GGG | + | Chr5:2464774-2464793 | None:intergenic | 35.0% | |
| AACTAGCTCATGATGAATTG+AGG | + | Chr5:2464468-2464487 | None:intergenic | 35.0% | |
| ACACACTTGATATTCTTCAG+TGG | + | Chr5:2465287-2465306 | None:intergenic | 35.0% | |
| ATATTAACAGTCACTGCTTG+CGG | + | Chr5:2465741-2465760 | None:intergenic | 35.0% | |
| ATTCATCATGAGCTAGTTGT+TGG | - | Chr5:2464470-2464489 | MsG0580024241.01.T01:three_prime_UTR | 35.0% | |
| CACCTGCACATAACAAATAT+TGG | + | Chr5:2465258-2465277 | None:intergenic | 35.0% | |
| CTTGATATTCTTCAGTGGAA+TGG | + | Chr5:2465282-2465301 | None:intergenic | 35.0% | |
| GAATGAATACTCTGCCAATA+CGG | + | Chr5:2465769-2465788 | None:intergenic | 35.0% | |
| GTTCAGGACATACCTTATAT+CGG | + | Chr5:2465187-2465206 | None:intergenic | 35.0% | |
| ! | TGTTGATGAAAGAGATCACT+CGG | - | Chr5:2465694-2465713 | MsG0580024241.01.T01:CDS | 35.0% |
| !! | CAATATTTGTTATGTGCAGG+TGG | - | Chr5:2465256-2465275 | MsG0580024241.01.T01:CDS | 35.0% |
| !! | CGAAGATATGCTTTGAAATG+AGG | - | Chr5:2465541-2465560 | MsG0580024241.01.T01:intron | 35.0% |
| !! | TTTACCTTTGCTTTGGTGTT+TGG | + | Chr5:2464579-2464598 | None:intergenic | 35.0% |
| !!! | CAGAAGACGATTTTGATTTC+TGG | - | Chr5:2465360-2465379 | MsG0580024241.01.T01:CDS | 35.0% |
| !!! | CAGTATTTTAGTGTGAGAGA+AGG | - | Chr5:2465014-2465033 | MsG0580024241.01.T01:CDS | 35.0% |
| !!! | CCATGTGCATCTATTTTAAC+GGG | + | Chr5:2465619-2465638 | None:intergenic | 35.0% |
| !!! | CCTATTTTGAGGTCAATGAA+GGG | - | Chr5:2465807-2465826 | MsG0580024241.01.T01:intron | 35.0% |
| !!! | CGATTTTGATTTCTGGCTTA+TGG | - | Chr5:2465367-2465386 | MsG0580024241.01.T01:CDS | 35.0% |
| !!! | CTATTTTAACGGGTCAATCT+TGG | + | Chr5:2465609-2465628 | None:intergenic | 35.0% |
| AACCCATCTAAGTCTTACAG+GGG | + | Chr5:2464773-2464792 | None:intergenic | 40.0% | |
| AATGCGTAGGATCCGATATA+AGG | - | Chr5:2465172-2465191 | MsG0580024241.01.T01:intron | 40.0% | |
| AATTCTTCAAGTAGGTGGAG+TGG | - | Chr5:2464977-2464996 | MsG0580024241.01.T01:CDS | 40.0% | |
| ACACAAAGAGTCCAAGAACA+TGG | - | Chr5:2464741-2464760 | MsG0580024241.01.T01:three_prime_UTR | 40.0% | |
| ATAAAGAGGACGTTGAGCTT+AGG | - | Chr5:2464948-2464967 | MsG0580024241.01.T01:exon | 40.0% | |
| ATCAGAAAGGTCAAATGCGT+AGG | - | Chr5:2465159-2465178 | MsG0580024241.01.T01:intron | 40.0% | |
| CCCGTTAAAATAGATGCACA+TGG | - | Chr5:2465616-2465635 | MsG0580024241.01.T01:intron | 40.0% | |
| CCCTTCATTGACCTCAAAAT+AGG | + | Chr5:2465810-2465829 | None:intergenic | 40.0% | |
| CCTCTTCATCTCCAATGAAA+AGG | - | Chr5:2465100-2465119 | MsG0580024241.01.T01:CDS | 40.0% | |
| GAAACCCATCTAAGTCTTAC+AGG | + | Chr5:2464775-2464794 | None:intergenic | 40.0% | |
| GCTCAAATTCTTCAAGTAGG+TGG | - | Chr5:2464972-2464991 | MsG0580024241.01.T01:CDS | 40.0% | |
| GGCTGAATTACTTATGTGCA+TGG | - | Chr5:2465913-2465932 | MsG0580024241.01.T01:CDS | 40.0% | |
| TAAAGAGGACGTTGAGCTTA+GGG | - | Chr5:2464949-2464968 | MsG0580024241.01.T01:exon | 40.0% | |
| TACCCCTGTAAGACTTAGAT+GGG | - | Chr5:2464768-2464787 | MsG0580024241.01.T01:three_prime_UTR | 40.0% | |
| TATTGTTCTCTCACTGCAGA+AGG | + | Chr5:2465129-2465148 | None:intergenic | 40.0% | |
| ! | CCTTTTCATTGGAGATGAAG+AGG | + | Chr5:2465103-2465122 | None:intergenic | 40.0% |
| !!! | GCCTATTTTGAGGTCAATGA+AGG | - | Chr5:2465806-2465825 | MsG0580024241.01.T01:intron | 40.0% |
| AAAGAGGACGTTGAGCTTAG+GGG | - | Chr5:2464950-2464969 | MsG0580024241.01.T01:exon | 45.0% | |
| AATTCCAACCAGCAAAAGCG+CGG | - | Chr5:2464699-2464718 | MsG0580024241.01.T01:three_prime_UTR | 45.0% | |
| CATTCATCGACAGAGAAGAG+AGG | - | Chr5:2465784-2465803 | MsG0580024241.01.T01:intron | 45.0% | |
| CCAACCAAACACCAAAGCAA+AGG | - | Chr5:2464572-2464591 | MsG0580024241.01.T01:three_prime_UTR | 45.0% | |
| GGGGCTCAAATTCTTCAAGT+AGG | - | Chr5:2464969-2464988 | MsG0580024241.01.T01:CDS | 45.0% | |
| GTACCCCTGTAAGACTTAGA+TGG | - | Chr5:2464767-2464786 | MsG0580024241.01.T01:three_prime_UTR | 45.0% | |
| TGCTCAAGTCAACTAGCAAG+TGG | + | Chr5:2464864-2464883 | None:intergenic | 45.0% | |
| TGTTATCTCTCCACCACATC+CGG | - | Chr5:2465062-2465081 | MsG0580024241.01.T01:CDS | 45.0% | |
| TTAGTGTGAGAGAAGGAGAG+AGG | - | Chr5:2465021-2465040 | MsG0580024241.01.T01:CDS | 45.0% | |
| ! | GAGAAGAGAGGCCTATTTTG+AGG | - | Chr5:2465796-2465815 | MsG0580024241.01.T01:intron | 45.0% |
| ! | GCAGAAGGCAACCTTTTCAT+TGG | + | Chr5:2465114-2465133 | None:intergenic | 45.0% |
| !! | CCTTTGCTTTGGTGTTTGGT+TGG | + | Chr5:2464575-2464594 | None:intergenic | 45.0% |
| !! | CTTTGAAATGAGGGACTTCG+TGG | - | Chr5:2465551-2465570 | MsG0580024241.01.T01:intron | 45.0% |
| ATGAAGAGGAGACCAGCTAG+AGG | + | Chr5:2465089-2465108 | None:intergenic | 50.0% | |
| !! | AGGGGTACTCACCATGTTCT+TGG | + | Chr5:2464755-2464774 | None:intergenic | 50.0% |
| ACCACATCCGGTCCTCTAGC+TGG | - | Chr5:2465074-2465093 | MsG0580024241.01.T01:CDS | 60.0% | |
| ACCAGCTAGAGGACCGGATG+TGG | + | Chr5:2465078-2465097 | None:intergenic | 60.0% | |
| AGCTAGAGGACCGGATGTGG+TGG | + | Chr5:2465075-2465094 | None:intergenic | 60.0% | |
| GAGGAGACCAGCTAGAGGAC+CGG | + | Chr5:2465084-2465103 | None:intergenic | 60.0% | |
| ! | CTGTTCTGCCGCGCTTTTGC+TGG | + | Chr5:2464710-2464729 | None:intergenic | 60.0% |
| ! | TCTGCCGCGCTTTTGCTGGT+TGG | + | Chr5:2464706-2464725 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr5 | gene | 2464458 | 2465979 | 2464458 | ID=MsG0580024241.01;Name=MsG0580024241.01 |
| Chr5 | mRNA | 2464458 | 2465979 | 2464458 | ID=MsG0580024241.01.T01;Parent=MsG0580024241.01;Name=MsG0580024241.01.T01;_AED=0.49;_eAED=0.49;_QI=0|0.33|0.5|1|0.66|0.5|4|495|240 |
| Chr5 | exon | 2464458 | 2465162 | 2464458 | ID=MsG0580024241.01.T01:exon:1758;Parent=MsG0580024241.01.T01 |
| Chr5 | exon | 2465244 | 2465518 | 2465244 | ID=MsG0580024241.01.T01:exon:1757;Parent=MsG0580024241.01.T01 |
| Chr5 | exon | 2465663 | 2465746 | 2465663 | ID=MsG0580024241.01.T01:exon:1756;Parent=MsG0580024241.01.T01 |
| Chr5 | exon | 2465826 | 2465979 | 2465826 | ID=MsG0580024241.01.T01:exon:1755;Parent=MsG0580024241.01.T01 |
| Chr5 | CDS | 2465826 | 2465979 | 2465826 | ID=MsG0580024241.01.T01:cds;Parent=MsG0580024241.01.T01 |
| Chr5 | CDS | 2465663 | 2465746 | 2465663 | ID=MsG0580024241.01.T01:cds;Parent=MsG0580024241.01.T01 |
| Chr5 | CDS | 2465244 | 2465518 | 2465244 | ID=MsG0580024241.01.T01:cds;Parent=MsG0580024241.01.T01 |
| Chr5 | CDS | 2464953 | 2465162 | 2464953 | ID=MsG0580024241.01.T01:cds;Parent=MsG0580024241.01.T01 |
| Chr5 | three_prime_UTR | 2464458 | 2464952 | 2464458 | ID=MsG0580024241.01.T01:three_prime_utr;Parent=MsG0580024241.01.T01 |
| Gene Sequence |
| Protein sequence |
