AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280006351.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280006351.01.T01 MTR_2g006750 92.342 666 6 1 1 621 1 666 0.0 1209
MsG0280006351.01.T01 MTR_8g085950 26.156 692 424 16 9 621 27 710 2.03e-55 204
MsG0280006351.01.T01 MTR_7g085820 26.771 706 412 19 5 621 22 711 1.95e-54 201
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280006351.01.T01 AT4G27640 74.671 683 128 2 1 638 1 683 0.0 1018
MsG0280006351.01.T01 AT5G19820 26.590 692 421 16 9 621 27 710 1.68e-56 207

Find 134 sgRNAs with CRISPR-Local

Find 312 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGCAACGTTGCCGAGATTT+TGG 0.151312 2:+796854 MsG0280006351.01.T01:CDS
CAGGGCAGTGGGATCATTTA+TGG 0.218098 2:+794016 MsG0280006351.01.T01:intron
GAAAATTTCAAAAGCAATTA+TGG 0.220839 2:-795406 None:intergenic
GAATCTCCTGCTCCTCTTCT+TGG 0.226432 2:+795441 MsG0280006351.01.T01:CDS
TTAAAATACGAGAACTGTTT+TGG 0.254230 2:-796357 None:intergenic
AACGGTGGGAAAACATGTTT+TGG 0.261454 2:-795828 None:intergenic
TCATAATGGGACACAATTTC+AGG 0.277277 2:-796067 None:intergenic
TCTATATAAGGAGGTAATAT+TGG 0.302516 2:-796679 None:intergenic
GAAATCGCAGCTTCTATATA+AGG 0.307636 2:-796691 None:intergenic
AGTTCTTTAACCGAAACAAT+TGG 0.317903 2:+793792 MsG0280006351.01.T01:CDS
ATTATCGATGGCGCAGTCTT+TGG 0.319982 2:+792428 MsG0280006351.01.T01:exon
ATGGGTACCTGCTGCAAAAC+AGG 0.320605 2:-792320 None:intergenic
GGGGACCACTTGAGGATCTT+TGG 0.342788 2:-792526 None:intergenic
GGGCATAAAACATGTAAGAT+AGG 0.345490 2:-795711 None:intergenic
AGGAGCGGCTTCCTTTGCTT+TGG 0.348405 2:+796021 MsG0280006351.01.T01:CDS
GGTTTGCTCAACTCAAAGTT+TGG 0.359221 2:+795500 MsG0280006351.01.T01:CDS
CTTGATACATTTAAGATGCT+TGG 0.364082 2:-795351 None:intergenic
TATGCTCCGTATCCTTTGCC+TGG 0.367098 2:+797206 MsG0280006351.01.T01:CDS
TTCTGCCCGTGTTTGTTTGA+GGG 0.374197 2:-792394 None:intergenic
GGAGCGGCTTCCTTTGCTTT+GGG 0.374919 2:+796022 MsG0280006351.01.T01:CDS
GTTTGGAGTACAGTGAGCTT+CGG 0.378045 2:+796811 MsG0280006351.01.T01:CDS
CTTCTGCCCGTGTTTGTTTG+AGG 0.381076 2:-792395 None:intergenic
TGACGGCGTGCGTCGTTGTC+TGG 0.384832 2:-792477 None:intergenic
GCTCCTCTAACCATTTGTTC+TGG 0.388209 2:-796004 None:intergenic
AGGGAAGGACGCTCTCATAA+TGG 0.389012 2:-796081 None:intergenic
TTTATATTCACTTTATATAT+GGG 0.391070 2:-792338 None:intergenic
CCAACCTGATGGCGTGTGTT+AGG 0.391395 2:-795525 None:intergenic
AGGCAATTCAGATTATTTCA+TGG 0.391562 2:+795640 MsG0280006351.01.T01:intron
TGCAAATAAGCCAAGGGCTT+GGG 0.392449 2:-797165 None:intergenic
AAAAGCATTCCCAATTGTTT+CGG 0.393393 2:-793802 None:intergenic
TTTGGAGTACAGTGAGCTTC+GGG 0.395371 2:+796812 MsG0280006351.01.T01:CDS
CCTGCTGCAAAACAGGGTTT+TGG 0.396905 2:-792313 None:intergenic
CTCAAGAGAGAACTGTACTA+TGG 0.398887 2:-795478 None:intergenic
TTAACGAGTTGTTTGATTTG+AGG 0.406351 2:-792651 None:intergenic
TCTTCCTGCAATCTTGATGA+TGG 0.416128 2:+796999 MsG0280006351.01.T01:CDS
TTTATGGAATTCACTCATGA+TGG 0.417219 2:+794032 MsG0280006351.01.T01:CDS
AACTGGAGTGTTGGATGAAA+AGG 0.418905 2:+797133 MsG0280006351.01.T01:CDS
GCGGAGAGTTGACGGACGTT+AGG 0.419513 2:-792582 None:intergenic
GTTCTTTAACCGAAACAATT+GGG 0.424435 2:+793793 MsG0280006351.01.T01:CDS
TTCTAGATCCTTTGATGGGA+AGG 0.427013 2:+796320 MsG0280006351.01.T01:CDS
TGGTTGATTCAGCAAGTAAA+GGG 0.428220 2:-795731 None:intergenic
AGAACCATCATCAAGATTGC+AGG 0.433032 2:-797003 None:intergenic
CTCAAGAGCATTTAAAATGC+AGG 0.435665 2:-796101 None:intergenic
GTGCAAATAAGCCAAGGGCT+TGG 0.437774 2:-797166 None:intergenic
GGGAAGGACGCTCTCATAAT+GGG 0.438634 2:-796080 None:intergenic
TCTAAAACCCTTTCAGCATA+AGG 0.439725 2:-796544 None:intergenic
TGATTTGATCTTCAGCTTGA+CGG 0.446917 2:-792494 None:intergenic
GGAAAAGTCATACTATGCTT+TGG 0.449365 2:+796258 MsG0280006351.01.T01:intron
TTTCATTCCTTATGCTGAAA+GGG 0.449604 2:+796537 MsG0280006351.01.T01:CDS
ACATTCTTGCAGTCTGCCAT+TGG 0.453459 2:+796487 MsG0280006351.01.T01:intron
GCAGCTGCAACCCAAGCCCT+TGG 0.459852 2:+797155 MsG0280006351.01.T01:CDS
CGGAGAGTTGACGGACGTTA+GGG 0.461068 2:-792581 None:intergenic
GATCCAGAACAAATGGTTAG+AGG 0.470244 2:+796001 MsG0280006351.01.T01:CDS
GAATCTCCAAGAAGAGGAGC+AGG 0.470703 2:-795447 None:intergenic
GGAGCCTAACACACGCCATC+AGG 0.476514 2:+795521 MsG0280006351.01.T01:CDS
AATTCAGATTATTTCATGGC+TGG 0.477944 2:+795644 MsG0280006351.01.T01:CDS
GATATTGCCAATGGATTTGA+AGG 0.480580 2:+797053 MsG0280006351.01.T01:CDS
ACTTCTGCAGCAGCTCGATC+AGG 0.481237 2:-795780 None:intergenic
CTTTCATTCCTTATGCTGAA+AGG 0.484815 2:+796536 MsG0280006351.01.T01:CDS
CGTAATATAAGTATTAGAAC+TGG 0.485017 2:+797116 MsG0280006351.01.T01:CDS
TTGGTTGATTCAGCAAGTAA+AGG 0.485871 2:-795732 None:intergenic
CCCATCAAAGGATCTAGAAA+AGG 0.489100 2:-796316 None:intergenic
GTCTGTAGGGAAAACGAGAA+TGG 0.491469 2:+796654 MsG0280006351.01.T01:CDS
AAAAGAAACGGAAACAAATC+CGG 0.495050 2:-792874 None:intergenic
GCAAAGTATGCTGTTCCGTC+TGG 0.495834 2:+792844 MsG0280006351.01.T01:CDS
TGTTCCGTCTGGCGAGTGGC+CGG 0.496217 2:+792855 MsG0280006351.01.T01:CDS
GTAAGAAAATCACCGGTCAT+TGG 0.497228 2:+792616 MsG0280006351.01.T01:CDS
TCAAGACAGTGCCTTGCCTC+AGG 0.498630 2:+795369 MsG0280006351.01.T01:CDS
TCTCAGGGATCCAGAACAAA+TGG 0.501538 2:+795994 MsG0280006351.01.T01:intron
ATACTTATATTACGAACCCT+TGG 0.510105 2:-797107 None:intergenic
GGCATAAAACATGTAAGATA+GGG 0.510921 2:-795710 None:intergenic
CATAGTACAGTTCTCTCTTG+AGG 0.511279 2:+795479 MsG0280006351.01.T01:CDS
TGAAACTCCTTCAAATCCAT+TGG 0.511656 2:-797060 None:intergenic
CGGAGGTGATGAATCAAAGC+GGG 0.513054 2:-792546 None:intergenic
TTTGCTTTGATTGCACACTT+TGG 0.518522 2:-792370 None:intergenic
ATGAAGCTCACGACGAGCCA+AGG 0.518577 2:+797090 MsG0280006351.01.T01:CDS
TTATGGAATTCACTCATGAT+GGG 0.520736 2:+794033 MsG0280006351.01.T01:CDS
AGTAATCCAGGCAAAGGATA+CGG 0.521284 2:-797212 None:intergenic
GGAGGACGGCGGAGAGTTGA+CGG 0.522488 2:-792590 None:intergenic
GCTTTGATTGCACACTTTGG+TGG 0.525434 2:-792367 None:intergenic
CACTCATGATGGGGATGAAG+TGG 0.529732 2:+794043 MsG0280006351.01.T01:CDS
ATCAAAGCGGGGACCACTTG+AGG 0.530188 2:-792534 None:intergenic
GCAAGAGCAACGGAACTAGT+AGG 0.532058 2:+796619 MsG0280006351.01.T01:CDS
GATTGCACACTTTGGTGGAA+AGG 0.542323 2:-792362 None:intergenic
GGAATGGTTGCAATGTCTGT+AGG 0.544624 2:+796640 MsG0280006351.01.T01:CDS
AGCAAATTGACCCAAAGCAA+AGG 0.545741 2:-796032 None:intergenic
ACTTCGCGATGATCTTCTTG+TGG 0.552871 2:-792913 None:intergenic
AAAACTGTCACCCAAAATCT+CGG 0.554247 2:-796865 None:intergenic
AAGTATTAGAACTGGAGTGT+TGG 0.554324 2:+797124 MsG0280006351.01.T01:CDS
GAATGGTTGCAATGTCTGTA+GGG 0.555569 2:+796641 MsG0280006351.01.T01:CDS
GGATGCATCTGATGAAGTAA+AGG 0.558466 2:+796123 MsG0280006351.01.T01:CDS
TCAAGAGCATTTAAAATGCA+GGG 0.562525 2:-796100 None:intergenic
CCGTTGCTCTTGCACGTGAA+CGG 0.562743 2:-796609 None:intergenic
ATGCTGTTCCGTCTGGCGAG+TGG 0.569051 2:+792851 MsG0280006351.01.T01:CDS
GCTTGCAGAGCTGCGAAATG+CGG 0.571253 2:-793828 None:intergenic
GCTAACAGCCTTCCCATCAA+AGG 0.574071 2:-796328 None:intergenic
AATGCAAGAGGCACGACATG+AGG 0.578699 2:-796975 None:intergenic
AGCAACGGAACTAGTAGGAA+TGG 0.581813 2:+796624 MsG0280006351.01.T01:CDS
CAAAACCCTCAAACAAACAC+GGG 0.584821 2:+792389 MsG0280006351.01.T01:five_prime_UTR
GGCAACATCTTCTTCTCCTG+AGG 0.587782 2:-795385 None:intergenic
CTCCTCCGTAAGAAAATCAC+CGG 0.588535 2:+792609 MsG0280006351.01.T01:CDS
TGAGAGCAGCAACTCGAACT+CGG 0.589318 2:-793887 None:intergenic
TATCACTGACCTGTGTTCCA+TGG 0.594798 2:-792697 None:intergenic
AGCAGAAGCAATAGAACCAA+TGG 0.595530 2:-796503 None:intergenic
ACACGGGCAGAAGCAGAAAG+AGG 0.595668 2:+792405 MsG0280006351.01.T01:five_prime_UTR
TGGGTACCTGCTGCAAAACA+GGG 0.598964 2:-792319 None:intergenic
AGAGAGTTTAGACCAATGAC+CGG 0.607017 2:-792628 None:intergenic
TATGCTGTGCAAATAAGCCA+AGG 0.607553 2:-797172 None:intergenic
TTGACTGAATCTCCAAGAAG+AGG 0.611184 2:-795453 None:intergenic
TATGGAATTCACTCATGATG+GGG 0.613169 2:+794034 MsG0280006351.01.T01:CDS
GAGCATTTAAAATGCAGGGA+AGG 0.614053 2:-796096 None:intergenic
TGAAGCTCACGACGAGCCAA+GGG 0.614991 2:+797091 MsG0280006351.01.T01:CDS
TCAAAGGATCTAGAAAAGGA+AGG 0.616472 2:-796312 None:intergenic
CCGTTCACGTGCAAGAGCAA+CGG 0.616770 2:+796609 MsG0280006351.01.T01:CDS
TGTGATGATGATATTGCCAA+TGG 0.617799 2:+797044 MsG0280006351.01.T01:CDS
CATCTTCTTCTCCTGAGGCA+AGG 0.618692 2:-795380 None:intergenic
AAATCCGGCCACTCGCCAGA+CGG 0.621738 2:-792859 None:intergenic
TTTCTTACGGAGGAGGACGG+CGG 0.623303 2:-792601 None:intergenic
TGCAGAAGTTATCGATACAA+TGG 0.624787 2:+795794 MsG0280006351.01.T01:CDS
GCAAAACCCTCAAACAAACA+CGG 0.628464 2:+792388 MsG0280006351.01.T01:five_prime_UTR
AGAACAAATGGTTAGAGGAG+CGG 0.634323 2:+796006 MsG0280006351.01.T01:CDS
ATCGCAGCTTCTATATAAGG+AGG 0.637578 2:-796688 None:intergenic
CATGGTGCTAACTAATGATG+AGG 0.645393 2:+796582 MsG0280006351.01.T01:CDS
GAGCTTCGGGAGTACACACA+TGG 0.646821 2:+796825 MsG0280006351.01.T01:CDS
AGCAGAAAGAGGATTATCGA+TGG 0.651082 2:+792416 MsG0280006351.01.T01:exon
TTGCAGGAAGAAAATGCAAG+AGG 0.655924 2:-796987 None:intergenic
TCTCATTGATAGCATCACCA+TGG 0.661427 2:+792680 MsG0280006351.01.T01:CDS
ATAGCATCACCATGGAACAC+AGG 0.663098 2:+792688 MsG0280006351.01.T01:CDS
TCTCGCCAAAGATCCTCAAG+TGG 0.665075 2:+792521 MsG0280006351.01.T01:CDS
ATGCTGTGCAAATAAGCCAA+GGG 0.669421 2:-797171 None:intergenic
AGGATACGGAGCATAAGAGA+TGG 0.669472 2:-797198 None:intergenic
GGAGAGTTGACGGACGTTAG+GGG 0.683816 2:-792580 None:intergenic
GGAGGTGATGAATCAAAGCG+GGG 0.727293 2:-792545 None:intergenic
GCGGAGGTGATGAATCAAAG+CGG 0.728138 2:-792547 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTATATTCACTTTATATAT+GGG - Chr2:792341-792360 None:intergenic 10.0%
!!! TTTTATATTCACTTTATATA+TGG - Chr2:792342-792361 None:intergenic 10.0%
!! AAAAAAAAACAAATTATTCC+AGG - Chr2:796769-796788 None:intergenic 15.0%
!! AAAACAATTTAGTGTATATT+TGG - Chr2:793464-793483 None:intergenic 15.0%
!! ATGATTATAACAATCTTTAT+AGG - Chr2:796411-796430 None:intergenic 15.0%
!!! TATTTTGCTTCTTTTTTTTT+GGG + Chr2:795019-795038 MsG0280006351.01.T01:intron 15.0%
!!! TTTTTTTCCTGTTATTTTTA+GGG + Chr2:796783-796802 MsG0280006351.01.T01:intron 15.0%
!!! TTTTTTTTCCTGTTATTTTT+AGG + Chr2:796782-796801 MsG0280006351.01.T01:intron 15.0%
!! AGATTTCAATATGTGATTAT+TGG + Chr2:794243-794262 MsG0280006351.01.T01:intron 20.0%
!! ATAACTAAGTATGTTCTAAT+TGG + Chr2:793049-793068 MsG0280006351.01.T01:intron 20.0%
!! GAAAATTTCAAAAGCAATTA+TGG - Chr2:795409-795428 None:intergenic 20.0%
!! GATTTCAATATGTGATTATT+GGG + Chr2:794244-794263 MsG0280006351.01.T01:intron 20.0%
!! TAACTAAGTATGTTCTAATT+GGG + Chr2:793050-793069 MsG0280006351.01.T01:intron 20.0%
!! TTGTATTGCATTTCATTATT+TGG + Chr2:793652-793671 MsG0280006351.01.T01:intron 20.0%
!!! AATTTTGCATGTATATATGT+AGG + Chr2:793004-793023 MsG0280006351.01.T01:intron 20.0%
!!! ATTTATTTTCTTCATGTTAG+CGG + Chr2:794146-794165 MsG0280006351.01.T01:intron 20.0%
!!! CAATGTTTATCATCATTTTT+AGG + Chr2:794930-794949 MsG0280006351.01.T01:intron 20.0%
!!! GTATTTTGCTTCTTTTTTTT+TGG + Chr2:795018-795037 MsG0280006351.01.T01:intron 20.0%
!!! GTTGATTTTGGAATTTTATT+AGG + Chr2:793752-793771 MsG0280006351.01.T01:intron 20.0%
!!! TATTTTAAAAGAAACATGCA+TGG + Chr2:796372-796391 MsG0280006351.01.T01:CDS 20.0%
!!! TTACAAGTGAAATTTTGTTT+TGG + Chr2:796939-796958 MsG0280006351.01.T01:intron 20.0%
!!! TTTTTTCCTGTTATTTTTAG+GGG + Chr2:796784-796803 MsG0280006351.01.T01:intron 20.0%
! AAATTTAATGCAAACTTGTC+TGG - Chr2:794697-794716 None:intergenic 25.0%
! AACCATTGTAAAAAGGTAAT+AGG + Chr2:794626-794645 MsG0280006351.01.T01:intron 25.0%
! AACTAGAGAATAAGATTTAC+AGG - Chr2:793634-793653 None:intergenic 25.0%
! AATCATGATGAAACATCTAT+CGG + Chr2:796425-796444 MsG0280006351.01.T01:intron 25.0%
! ATGAGGAAAATATTATTGCT+GGG - Chr2:795108-795127 None:intergenic 25.0%
! ATTGTAAAAAGGTAATAGGA+AGG + Chr2:794630-794649 MsG0280006351.01.T01:intron 25.0%
! CGTAATATAAGTATTAGAAC+TGG + Chr2:797116-797135 MsG0280006351.01.T01:CDS 25.0%
! TACAGAAGCAAATTCAAAAA+CGG - Chr2:795849-795868 None:intergenic 25.0%
! TCTATATAAGGAGGTAATAT+TGG - Chr2:796682-796701 None:intergenic 25.0%
! TGACTACATTGAAAAAGAAA+CGG - Chr2:792889-792908 None:intergenic 25.0%
! TGTTGTTATGTGATGTTTAA+TGG + Chr2:793675-793694 MsG0280006351.01.T01:intron 25.0%
!! AAGGTAAAGTAATTTGTGTT+TGG + Chr2:793244-793263 MsG0280006351.01.T01:intron 25.0%
!! AAGTAAGTTGGAATCAATAT+TGG + Chr2:793909-793928 MsG0280006351.01.T01:intron 25.0%
!! AGGAATTTAAGTTACTTCAT+TGG + Chr2:794885-794904 MsG0280006351.01.T01:intron 25.0%
!! TTAAAATACGAGAACTGTTT+TGG - Chr2:796360-796379 None:intergenic 25.0%
!! TTCCTATTACCTTTTTACAA+TGG - Chr2:794631-794650 None:intergenic 25.0%
!!! CTTATGCTTTTTCAAAATAC+TGG - Chr2:795682-795701 None:intergenic 25.0%
!!! GATTTTGGAATTTTATTAGG+TGG + Chr2:793755-793774 MsG0280006351.01.T01:intron 25.0%
!!! TCATTTCATTTAATTTGTGC+AGG + Chr2:796237-796256 MsG0280006351.01.T01:intron 25.0%
AAAAGAAACGGAAACAAATC+CGG - Chr2:792877-792896 None:intergenic 30.0%
AAACTGAGTAAAAAATGCGA+AGG + Chr2:794331-794350 MsG0280006351.01.T01:intron 30.0%
AAAGAGATGGAAAACCATAT+AGG + Chr2:794277-794296 MsG0280006351.01.T01:intron 30.0%
AACAAATTATTCCAGGAAGA+AGG - Chr2:796762-796781 None:intergenic 30.0%
AAGAAAGCAAAAAGTAATCC+AGG - Chr2:797227-797246 None:intergenic 30.0%
AATACTCCTTCATCTTTCAT+AGG + Chr2:794726-794745 MsG0280006351.01.T01:intron 30.0%
AATTCAGATTATTTCATGGC+TGG + Chr2:795644-795663 MsG0280006351.01.T01:CDS 30.0%
AGCAAAACAAATATGAAAGC+AGG - Chr2:795589-795608 None:intergenic 30.0%
AGGCAATTCAGATTATTTCA+TGG + Chr2:795640-795659 MsG0280006351.01.T01:intron 30.0%
AGGCAGATGAGAATAATTAT+AGG + Chr2:793024-793043 MsG0280006351.01.T01:intron 30.0%
AGTTCTTTAACCGAAACAAT+TGG + Chr2:793792-793811 MsG0280006351.01.T01:CDS 30.0%
ATACTTATATTACGAACCCT+TGG - Chr2:797110-797129 None:intergenic 30.0%
ATATTCTAACAGTTCTACAG+AGG - Chr2:794582-794601 None:intergenic 30.0%
ATCATGATGAAACATCTATC+GGG + Chr2:796426-796445 MsG0280006351.01.T01:intron 30.0%
CACATATTGAAATCTCTTGA+TGG - Chr2:794238-794257 None:intergenic 30.0%
CATGAGGAAAATATTATTGC+TGG - Chr2:795109-795128 None:intergenic 30.0%
CCAATATGATAGATTCAGAT+AGG - Chr2:794524-794543 None:intergenic 30.0%
CCTATCTGAATCTATCATAT+TGG + Chr2:794521-794540 MsG0280006351.01.T01:intron 30.0%
CTAACAGAACCATTGTAAAA+AGG + Chr2:794619-794638 MsG0280006351.01.T01:intron 30.0%
CTATGATGTATAACATCATG+AGG - Chr2:795125-795144 None:intergenic 30.0%
CTCATGATGTTATACATCAT+AGG + Chr2:795123-795142 MsG0280006351.01.T01:intron 30.0%
CTTATACATGATAAGCACTT+AGG - Chr2:793111-793130 None:intergenic 30.0%
GGAACAAATGAAAAAAAAGC+TGG + Chr2:795943-795962 MsG0280006351.01.T01:intron 30.0%
GGCATAAAACATGTAAGATA+GGG - Chr2:795713-795732 None:intergenic 30.0%
GTGTTTGGTTAGATAGAAAA+GGG - Chr2:794449-794468 None:intergenic 30.0%
GTTCTTTAACCGAAACAATT+GGG + Chr2:793793-793812 MsG0280006351.01.T01:CDS 30.0%
TATTCTAACAGTTCTACAGA+GGG - Chr2:794581-794600 None:intergenic 30.0%
TCTCATTATGAGTGATTTCT+TGG + Chr2:794847-794866 MsG0280006351.01.T01:intron 30.0%
TCTTATGTCAGCATATTTCT+AGG - Chr2:794810-794829 None:intergenic 30.0%
TGTTTGGTTAGATAGAAAAG+GGG - Chr2:794448-794467 None:intergenic 30.0%
TTAAAAGAAACATGCATGGT+AGG + Chr2:796376-796395 MsG0280006351.01.T01:intron 30.0%
TTAGTGAGAGATTATCATGT+TGG + Chr2:794198-794217 MsG0280006351.01.T01:intron 30.0%
TTATGGAATTCACTCATGAT+GGG + Chr2:794033-794052 MsG0280006351.01.T01:CDS 30.0%
TTCCAAAATCAACAAAAGCT+TGG - Chr2:793745-793764 None:intergenic 30.0%
TTTATGGAATTCACTCATGA+TGG + Chr2:794032-794051 MsG0280006351.01.T01:CDS 30.0%
TTTCATTCCTTATGCTGAAA+GGG + Chr2:796537-796556 MsG0280006351.01.T01:CDS 30.0%
! ATCATCATCTTCGTTTTCAT+TGG - Chr2:795754-795773 None:intergenic 30.0%
! ATCTTTTCCAAATTTTGCCA+GGG + Chr2:793998-794017 MsG0280006351.01.T01:intron 30.0%
! CTTGATACATTTAAGATGCT+TGG - Chr2:795354-795373 None:intergenic 30.0%
! CTTGGATAATCAGCATTTTT+AGG + Chr2:794865-794884 MsG0280006351.01.T01:intron 30.0%
! GATGAAGTAAAGGTATACAT+TGG + Chr2:796133-796152 MsG0280006351.01.T01:intron 30.0%
! TCTTTTACTTAAGTGTTTGC+AGG + Chr2:793851-793870 MsG0280006351.01.T01:CDS 30.0%
! TTTCAATAACACAGCTCTAA+TGG - Chr2:794313-794332 None:intergenic 30.0%
!! AAAAGCATTCCCAATTGTTT+CGG - Chr2:793805-793824 None:intergenic 30.0%
!! AGAGTTGATGAAAAACTTCA+TGG + Chr2:796564-796583 MsG0280006351.01.T01:CDS 30.0%
!! TCAAGAGCATTTAAAATGCA+GGG - Chr2:796103-796122 None:intergenic 30.0%
!! TCTGTCTAAAATTGAGTTGA+AGG + Chr2:793225-793244 MsG0280006351.01.T01:intron 30.0%
!! TCTTGATGGTGAACTAATTA+CGG - Chr2:794224-794243 None:intergenic 30.0%
!! TGTATATTTGGTTCCACTTT+TGG - Chr2:793452-793471 None:intergenic 30.0%
!! TTAACGAGTTGTTTGATTTG+AGG - Chr2:792654-792673 None:intergenic 30.0%
!!! TTATTTTTAGGGGTTTGGTT+TGG + Chr2:796794-796813 MsG0280006351.01.T01:intron 30.0%
AAAACTGTCACCCAAAATCT+CGG - Chr2:796868-796887 None:intergenic 35.0%
AAAGAAGAGATCCTTTGTGA+AGG - Chr2:794377-794396 None:intergenic 35.0%
AAGAAGAGATCCTTTGTGAA+GGG - Chr2:794376-794395 None:intergenic 35.0%
AAGTATTAGAACTGGAGTGT+TGG + Chr2:797124-797143 MsG0280006351.01.T01:CDS 35.0%
ACCAAACCCCTAAAAATAAC+AGG - Chr2:796793-796812 None:intergenic 35.0%
AGAAAAGGGGAAATCAGATA+AGG - Chr2:794435-794454 None:intergenic 35.0%
AGAAGACCTATGAAAGATGA+AGG - Chr2:794735-794754 None:intergenic 35.0%
AGAAGCAAATTCAAAAACGG+TGG - Chr2:795846-795865 None:intergenic 35.0%
ATGTTCTAATTGGGTCTGTT+TGG + Chr2:793059-793078 MsG0280006351.01.T01:intron 35.0%
CTAGCTGTGGAATTATCATA+GGG + Chr2:794782-794801 MsG0280006351.01.T01:intron 35.0%
CTTTCATTCCTTATGCTGAA+AGG + Chr2:796536-796555 MsG0280006351.01.T01:CDS 35.0%
GAAAAGGGGAAATCAGATAA+GGG - Chr2:794434-794453 None:intergenic 35.0%
GAAATCGCAGCTTCTATATA+AGG - Chr2:796694-796713 None:intergenic 35.0%
GAAGCAAATTCAAAAACGGT+GGG - Chr2:795845-795864 None:intergenic 35.0%
GCTTCAGGTAGAATCAATTA+TGG + Chr2:793345-793364 MsG0280006351.01.T01:intron 35.0%
GGAAAAGTCATACTATGCTT+TGG + Chr2:796258-796277 MsG0280006351.01.T01:intron 35.0%
GGGCATAAAACATGTAAGAT+AGG - Chr2:795714-795733 None:intergenic 35.0%
GGTGTTTGGTTAGATAGAAA+AGG - Chr2:794450-794469 None:intergenic 35.0%
GTATACATTGGAGAAGAGAA+TGG + Chr2:796145-796164 MsG0280006351.01.T01:intron 35.0%
GTTCCAATGAAACCAATTAG+AGG + Chr2:795198-795217 MsG0280006351.01.T01:intron 35.0%
TATGGAATTCACTCATGATG+GGG + Chr2:794034-794053 MsG0280006351.01.T01:CDS 35.0%
TCAAAGGATCTAGAAAAGGA+AGG - Chr2:796315-796334 None:intergenic 35.0%
TCAGGTAGAATCAATTATGG+AGG + Chr2:793348-793367 MsG0280006351.01.T01:intron 35.0%
TGAAACTCCTTCAAATCCAT+TGG - Chr2:797063-797082 None:intergenic 35.0%
TGATAGATTCAGATAGGACA+AGG - Chr2:794518-794537 None:intergenic 35.0%
TGATTTGATCTTCAGCTTGA+CGG - Chr2:792497-792516 None:intergenic 35.0%
TGCAGAAGTTATCGATACAA+TGG + Chr2:795794-795813 MsG0280006351.01.T01:CDS 35.0%
TTGGATGAACAGCTAATTTG+CGG + Chr2:793078-793097 MsG0280006351.01.T01:intron 35.0%
TTTGCTTTGATTGCACACTT+TGG - Chr2:792373-792392 None:intergenic 35.0%
! AAGCCTCTAATTGGTTTCAT+TGG - Chr2:795204-795223 None:intergenic 35.0%
! AATGACCGGTGATTTTCTTA+CGG - Chr2:792617-792636 None:intergenic 35.0%
! AATTGATTCTACCTGAAGCT+AGG - Chr2:793344-793363 None:intergenic 35.0%
! AGCACAACATTTTGTCACTA+TGG - Chr2:794989-795008 None:intergenic 35.0%
! AGCAGGAGTATAAAAAGTCA+AGG - Chr2:795572-795591 None:intergenic 35.0%
! ATAACACAGCTCTAATGGTT+TGG - Chr2:794308-794327 None:intergenic 35.0%
! CCTTTTCTAGATCCTTTGAT+GGG + Chr2:796316-796335 MsG0280006351.01.T01:CDS 35.0%
! CTGCATTTTAAATGCTCTTG+AGG + Chr2:796102-796121 MsG0280006351.01.T01:CDS 35.0%
! GATATTGCCAATGGATTTGA+AGG + Chr2:797053-797072 MsG0280006351.01.T01:CDS 35.0%
! GATCTTTTCCAAATTTTGCC+AGG + Chr2:793997-794016 MsG0280006351.01.T01:intron 35.0%
! GCTGACATAAGAAGTATAGT+AGG + Chr2:794818-794837 MsG0280006351.01.T01:intron 35.0%
! GGAGCTAAAATTGATTCTAG+AGG - Chr2:793428-793447 None:intergenic 35.0%
! TCATAATGGGACACAATTTC+AGG - Chr2:796070-796089 None:intergenic 35.0%
! TCCTTTTCTAGATCCTTTGA+TGG + Chr2:796315-796334 MsG0280006351.01.T01:CDS 35.0%
! TCTAAAACCCTTTCAGCATA+AGG - Chr2:796547-796566 None:intergenic 35.0%
! TGGTTGATTCAGCAAGTAAA+GGG - Chr2:795734-795753 None:intergenic 35.0%
! TGTCATTTCTGAAGGTTGTT+TGG + Chr2:795922-795941 MsG0280006351.01.T01:intron 35.0%
! TGTGATGATGATATTGCCAA+TGG + Chr2:797044-797063 MsG0280006351.01.T01:CDS 35.0%
! TTGGTTGATTCAGCAAGTAA+AGG - Chr2:795735-795754 None:intergenic 35.0%
!! ACTTCATTGGTGTCAATACA+GGG + Chr2:794963-794982 MsG0280006351.01.T01:intron 35.0%
!! AGCTGTTTTCATAAGTTCTC+AGG + Chr2:793566-793585 MsG0280006351.01.T01:intron 35.0%
!! ATATTTGGTTCCACTTTTGG+AGG - Chr2:793449-793468 None:intergenic 35.0%
!! ATGGTTTGGTTCTTCCTATA+TGG - Chr2:794294-794313 None:intergenic 35.0%
!! CTCAAGAGCATTTAAAATGC+AGG - Chr2:796104-796123 None:intergenic 35.0%
!! GTTGATAACAAGCCTCTAAT+TGG - Chr2:795213-795232 None:intergenic 35.0%
!! TACTTCATTGGTGTCAATAC+AGG + Chr2:794962-794981 MsG0280006351.01.T01:intron 35.0%
!! TGTTACTGGCTTTATCTAAC+AGG + Chr2:795620-795639 MsG0280006351.01.T01:intron 35.0%
!!! AATTTTAGCTCCTCCAAAAG+TGG + Chr2:793436-793455 MsG0280006351.01.T01:intron 35.0%
!!! GACCAAGCTTTTGTTGATTT+TGG + Chr2:793740-793759 MsG0280006351.01.T01:intron 35.0%
!!! TCCTGTTATTTTTAGGGGTT+TGG + Chr2:796789-796808 MsG0280006351.01.T01:intron 35.0%
AAAATGTTGTGCTCACTGCT+CGG + Chr2:794996-795015 MsG0280006351.01.T01:intron 40.0%
ACAGATGCTTCTCGAAACTT+TGG - Chr2:795890-795909 None:intergenic 40.0%
AGAACAAATGGTTAGAGGAG+CGG + Chr2:796006-796025 MsG0280006351.01.T01:CDS 40.0%
AGAACCATCATCAAGATTGC+AGG - Chr2:797006-797025 None:intergenic 40.0%
AGAAGAGATCCTTTGTGAAG+GGG - Chr2:794375-794394 None:intergenic 40.0%
AGAGAGTTTAGACCAATGAC+CGG - Chr2:792631-792650 None:intergenic 40.0%
AGCAAATTGACCCAAAGCAA+AGG - Chr2:796035-796054 None:intergenic 40.0%
AGCAACAGTGTTAAGTGTGA+AGG - Chr2:796725-796744 None:intergenic 40.0%
AGCAGAAAGAGGATTATCGA+TGG + Chr2:792416-792435 MsG0280006351.01.T01:exon 40.0%
AGCAGAAGCAATAGAACCAA+TGG - Chr2:796506-796525 None:intergenic 40.0%
AGTAATCCAGGCAAAGGATA+CGG - Chr2:797215-797234 None:intergenic 40.0%
ATCGCAGCTTCTATATAAGG+AGG - Chr2:796691-796710 None:intergenic 40.0%
ATGCTGTGCAAATAAGCCAA+GGG - Chr2:797174-797193 None:intergenic 40.0%
CAAAACCCTCAAACAAACAC+GGG + Chr2:792389-792408 MsG0280006351.01.T01:five_prime_UTR 40.0%
CAGATGCTTCTCGAAACTTT+GGG - Chr2:795889-795908 None:intergenic 40.0%
CATAGTACAGTTCTCTCTTG+AGG + Chr2:795479-795498 MsG0280006351.01.T01:CDS 40.0%
CCCATCAAAGGATCTAGAAA+AGG - Chr2:796319-796338 None:intergenic 40.0%
CCTATTCTCCAAATTGTCCT+GGG + Chr2:795968-795987 MsG0280006351.01.T01:intron 40.0%
CTCAAGAGAGAACTGTACTA+TGG - Chr2:795481-795500 None:intergenic 40.0%
GAATGGTTGCAATGTCTGTA+GGG + Chr2:796641-796660 MsG0280006351.01.T01:CDS 40.0%
GATCCAGAACAAATGGTTAG+AGG + Chr2:796001-796020 MsG0280006351.01.T01:CDS 40.0%
GCAAAAAGTAATCCAGGCAA+AGG - Chr2:797221-797240 None:intergenic 40.0%
GCAAAACCCTCAAACAAACA+CGG + Chr2:792388-792407 MsG0280006351.01.T01:five_prime_UTR 40.0%
GCTAGCTGTGGAATTATCAT+AGG + Chr2:794781-794800 MsG0280006351.01.T01:intron 40.0%
GGATGCATCTGATGAAGTAA+AGG + Chr2:796123-796142 MsG0280006351.01.T01:CDS 40.0%
GGGAACTCAGAAAAAAGAGA+TGG + Chr2:794264-794283 MsG0280006351.01.T01:intron 40.0%
GTAAGAAAATCACCGGTCAT+TGG + Chr2:792616-792635 MsG0280006351.01.T01:CDS 40.0%
TAGCTACAAATCCTAGCTTC+AGG + Chr2:793330-793349 MsG0280006351.01.T01:intron 40.0%
TATGCTGTGCAAATAAGCCA+AGG - Chr2:797175-797194 None:intergenic 40.0%
TCTTCCTGCAATCTTGATGA+TGG + Chr2:796999-797018 MsG0280006351.01.T01:CDS 40.0%
TTCTAGATCCTTTGATGGGA+AGG + Chr2:796320-796339 MsG0280006351.01.T01:CDS 40.0%
TTGACTGAATCTCCAAGAAG+AGG - Chr2:795456-795475 None:intergenic 40.0%
TTGCAGGAAGAAAATGCAAG+AGG - Chr2:796990-797009 None:intergenic 40.0%
TTGTCATCAAAACCCTGTCT+TGG - Chr2:794913-794932 None:intergenic 40.0%
TTTGCATTTGACCTTCTTCC+TGG + Chr2:796748-796767 MsG0280006351.01.T01:intron 40.0%
! AACGGTGGGAAAACATGTTT+TGG - Chr2:795831-795850 None:intergenic 40.0%
! ACGGTGGGAAAACATGTTTT+GGG - Chr2:795830-795849 None:intergenic 40.0%
! CATGGTGCTAACTAATGATG+AGG + Chr2:796582-796601 MsG0280006351.01.T01:CDS 40.0%
! GAAGCATCTGTTACTGCATT+GGG + Chr2:795899-795918 MsG0280006351.01.T01:intron 40.0%
! GAGCATTTAAAATGCAGGGA+AGG - Chr2:796099-796118 None:intergenic 40.0%
! GGTTTGCTCAACTCAAAGTT+TGG + Chr2:795500-795519 MsG0280006351.01.T01:CDS 40.0%
! TCTCATTGATAGCATCACCA+TGG + Chr2:792680-792699 MsG0280006351.01.T01:CDS 40.0%
!! AACTGGAGTGTTGGATGAAA+AGG + Chr2:797133-797152 MsG0280006351.01.T01:CDS 40.0%
!! AGAAGCATCTGTTACTGCAT+TGG + Chr2:795898-795917 MsG0280006351.01.T01:intron 40.0%
!! GCTCACTAGTTTGTTGTTAC+TGG + Chr2:795606-795625 MsG0280006351.01.T01:intron 40.0%
!! TTCGCACTTGCTTTTCTTAC+AGG - Chr2:792808-792827 None:intergenic 40.0%
!! TTTCTTCATGTTAGCGGACT+TGG + Chr2:794152-794171 MsG0280006351.01.T01:intron 40.0%
ACATTCTTGCAGTCTGCCAT+TGG + Chr2:796487-796506 MsG0280006351.01.T01:intron 45.0%
ACCTCTAACTGACCTACCAA+CGG + Chr2:794467-794486 MsG0280006351.01.T01:intron 45.0%
ACTTCGCGATGATCTTCTTG+TGG - Chr2:792916-792935 None:intergenic 45.0%
AGACTGCAAGAATGTTCAGG+AGG - Chr2:796482-796501 None:intergenic 45.0%
AGATCTCCGTAAGCGAAAAC+AGG - Chr2:793982-794001 None:intergenic 45.0%
AGCAACGGAACTAGTAGGAA+TGG + Chr2:796624-796643 MsG0280006351.01.T01:CDS 45.0%
AGGATACGGAGCATAAGAGA+TGG - Chr2:797201-797220 None:intergenic 45.0%
ATAGCATCACCATGGAACAC+AGG + Chr2:792688-792707 MsG0280006351.01.T01:CDS 45.0%
ATTATCGATGGCGCAGTCTT+TGG + Chr2:792428-792447 MsG0280006351.01.T01:exon 45.0%
CAAGAAGATCATCGCGAAGT+TGG + Chr2:792916-792935 MsG0280006351.01.T01:intron 45.0%
CCCAGGACAATTTGGAGAAT+AGG - Chr2:795971-795990 None:intergenic 45.0%
CTCCTCCGTAAGAAAATCAC+CGG + Chr2:792609-792628 MsG0280006351.01.T01:CDS 45.0%
GATTGCACACTTTGGTGGAA+AGG - Chr2:792365-792384 None:intergenic 45.0%
GCCTATTCTCCAAATTGTCC+TGG + Chr2:795967-795986 MsG0280006351.01.T01:intron 45.0%
GCTCCTCTAACCATTTGTTC+TGG - Chr2:796007-796026 None:intergenic 45.0%
GCTTTGATTGCACACTTTGG+TGG - Chr2:792370-792389 None:intergenic 45.0%
GGAATGGTTGCAATGTCTGT+AGG + Chr2:796640-796659 MsG0280006351.01.T01:CDS 45.0%
GTCTGTAGGGAAAACGAGAA+TGG + Chr2:796654-796673 MsG0280006351.01.T01:CDS 45.0%
GTTGCTGCTCTCAAGTAAGT+TGG + Chr2:793897-793916 MsG0280006351.01.T01:intron 45.0%
TATCACTGACCTGTGTTCCA+TGG - Chr2:792700-792719 None:intergenic 45.0%
TATGACCCAAACCAACCTGA+TGG - Chr2:795539-795558 None:intergenic 45.0%
TCTCAGGGATCCAGAACAAA+TGG + Chr2:795994-796013 MsG0280006351.01.T01:intron 45.0%
TGCAAATAAGCCAAGGGCTT+GGG - Chr2:797168-797187 None:intergenic 45.0%
TGGTGTGTTTCATTGGCAGA+CGG + Chr2:794172-794191 MsG0280006351.01.T01:intron 45.0%
TGTTAAGCTCATGCTAGCTG+TGG + Chr2:794769-794788 MsG0280006351.01.T01:intron 45.0%
TTCTGCCCGTGTTTGTTTGA+GGG - Chr2:792397-792416 None:intergenic 45.0%
! AGCAACGTTGCCGAGATTTT+GGG + Chr2:796855-796874 MsG0280006351.01.T01:CDS 45.0%
! CAGTGTCCTGTTTTCGCTTA+CGG + Chr2:793973-793992 MsG0280006351.01.T01:intron 45.0%
! GATTTTCTTACGGAGGAGGA+CGG - Chr2:792607-792626 None:intergenic 45.0%
! GTTTGGAGTACAGTGAGCTT+CGG + Chr2:796811-796830 MsG0280006351.01.T01:CDS 45.0%
! TTTGGAGTACAGTGAGCTTC+GGG + Chr2:796812-796831 MsG0280006351.01.T01:CDS 45.0%
! TTTGGGTGACAGTTTTGCAC+AGG + Chr2:796872-796891 MsG0280006351.01.T01:CDS 45.0%
!! ACTTCATTGGTGCCAAGACA+GGG + Chr2:794898-794917 MsG0280006351.01.T01:intron 45.0%
!! GCACTTGCTTTTCTTACAGG+AGG - Chr2:792805-792824 None:intergenic 45.0%
!! GCATTGGGTGTCATTTCTGA+AGG + Chr2:795914-795933 MsG0280006351.01.T01:intron 45.0%
!! GTAGGTCAGTTAGAGGTGTT+TGG - Chr2:794464-794483 None:intergenic 45.0%
!! TACTTCATTGGTGCCAAGAC+AGG + Chr2:794897-794916 MsG0280006351.01.T01:intron 45.0%
AAATTGTCCTGGGAGCTCTC+AGG + Chr2:795978-795997 MsG0280006351.01.T01:intron 50.0%
AATTGTCCTGGGAGCTCTCA+GGG + Chr2:795979-795998 MsG0280006351.01.T01:intron 50.0%
AGGGAAGGACGCTCTCATAA+TGG - Chr2:796084-796103 None:intergenic 50.0%
ATGCGAAGGAATGTCCCACT+AGG + Chr2:794345-794364 MsG0280006351.01.T01:intron 50.0%
ATGGGTACCTGCTGCAAAAC+AGG - Chr2:792323-792342 None:intergenic 50.0%
CAGGGCAGTGGGATCATTTA+TGG + Chr2:794016-794035 MsG0280006351.01.T01:intron 50.0%
CATAAATGATCCCACTGCCC+TGG - Chr2:794018-794037 None:intergenic 50.0%
CATCTTCTTCTCCTGAGGCA+AGG - Chr2:795383-795402 None:intergenic 50.0%
CATTCTGTCAGTTAGCCCGT+TGG - Chr2:794486-794505 None:intergenic 50.0%
CCTCTAACTGACCTACCAAC+GGG + Chr2:794468-794487 MsG0280006351.01.T01:intron 50.0%
CGGAGGTGATGAATCAAAGC+GGG - Chr2:792549-792568 None:intergenic 50.0%
CTAGGGTTTCCCCTTCACAA+AGG + Chr2:794363-794382 MsG0280006351.01.T01:intron 50.0%
CTTCTGCCCGTGTTTGTTTG+AGG - Chr2:792398-792417 None:intergenic 50.0%
GAATCTCCAAGAAGAGGAGC+AGG - Chr2:795450-795469 None:intergenic 50.0%
GAATCTCCTGCTCCTCTTCT+TGG + Chr2:795441-795460 MsG0280006351.01.T01:CDS 50.0%
GCAAAGTATGCTGTTCCGTC+TGG + Chr2:792844-792863 MsG0280006351.01.T01:CDS 50.0%
GCAAGAGCAACGGAACTAGT+AGG + Chr2:796619-796638 MsG0280006351.01.T01:CDS 50.0%
GCGGAGGTGATGAATCAAAG+CGG - Chr2:792550-792569 None:intergenic 50.0%
GCTAACAGCCTTCCCATCAA+AGG - Chr2:796331-796350 None:intergenic 50.0%
GGAGGTGATGAATCAAAGCG+GGG - Chr2:792548-792567 None:intergenic 50.0%
GGCAACATCTTCTTCTCCTG+AGG - Chr2:795388-795407 None:intergenic 50.0%
GGCAGACTGCAAGAATGTTC+AGG - Chr2:796485-796504 None:intergenic 50.0%
GGGAAGGACGCTCTCATAAT+GGG - Chr2:796083-796102 None:intergenic 50.0%
GTGCAAATAAGCCAAGGGCT+TGG - Chr2:797169-797188 None:intergenic 50.0%
TATGCTCCGTATCCTTTGCC+TGG + Chr2:797206-797225 MsG0280006351.01.T01:CDS 50.0%
TCTCGCCAAAGATCCTCAAG+TGG + Chr2:792521-792540 MsG0280006351.01.T01:CDS 50.0%
TGAGAGCAGCAACTCGAACT+CGG - Chr2:793890-793909 None:intergenic 50.0%
TGAGAGCTCCCAGGACAATT+TGG - Chr2:795979-795998 None:intergenic 50.0%
TGCGAAGGAATGTCCCACTA+GGG + Chr2:794346-794365 MsG0280006351.01.T01:intron 50.0%
TGGGTACCTGCTGCAAAACA+GGG - Chr2:792322-792341 None:intergenic 50.0%
TGTGAAGGGGAAACCCTAGT+GGG - Chr2:794362-794381 None:intergenic 50.0%
TTGTGAAGGGGAAACCCTAG+TGG - Chr2:794363-794382 None:intergenic 50.0%
! AATGCAAGAGGCACGACATG+AGG - Chr2:796978-796997 None:intergenic 50.0%
! CACTCATGATGGGGATGAAG+TGG + Chr2:794043-794062 MsG0280006351.01.T01:CDS 50.0%
! CAGCAACGTTGCCGAGATTT+TGG + Chr2:796854-796873 MsG0280006351.01.T01:CDS 50.0%
! CCAAAACCCTGTTTTGCAGC+AGG + Chr2:792313-792332 MsG0280006351.01.T01:five_prime_UTR 50.0%
! CCAAATTTTGCCAGGGCAGT+GGG + Chr2:794005-794024 MsG0280006351.01.T01:intron 50.0%
! CCTGCTGCAAAACAGGGTTT+TGG - Chr2:792316-792335 None:intergenic 50.0%
! CGGTGATTTTCTTACGGAGG+AGG - Chr2:792611-792630 None:intergenic 50.0%
! GACCGGTGATTTTCTTACGG+AGG - Chr2:792614-792633 None:intergenic 50.0%
! TCCAAATTTTGCCAGGGCAG+TGG + Chr2:794004-794023 MsG0280006351.01.T01:intron 50.0%
!! ACACGCCATCAGGTTGGTTT+GGG + Chr2:795531-795550 MsG0280006351.01.T01:intron 50.0%
!! ACGGACGTTAGGGGTTTTAG+CGG - Chr2:792574-792593 None:intergenic 50.0%
!! GCGGACTTGGTGTGTTTCAT+TGG + Chr2:794165-794184 MsG0280006351.01.T01:intron 50.0%
ACACGGGCAGAAGCAGAAAG+AGG + Chr2:792405-792424 MsG0280006351.01.T01:five_prime_UTR 55.0%
ACTTCTGCAGCAGCTCGATC+AGG - Chr2:795783-795802 None:intergenic 55.0%
AGGAGCGGCTTCCTTTGCTT+TGG + Chr2:796021-796040 MsG0280006351.01.T01:CDS 55.0%
ATCAAAGCGGGGACCACTTG+AGG - Chr2:792537-792556 None:intergenic 55.0%
ATGAAGCTCACGACGAGCCA+AGG + Chr2:797090-797109 MsG0280006351.01.T01:CDS 55.0%
CCCACTGCCCTGGCAAAATT+TGG - Chr2:794008-794027 None:intergenic 55.0%
CCGTTCACGTGCAAGAGCAA+CGG + Chr2:796609-796628 MsG0280006351.01.T01:CDS 55.0%
CCGTTGCTCTTGCACGTGAA+CGG - Chr2:796612-796631 None:intergenic 55.0%
CCTAACACACGCCATCAGGT+TGG + Chr2:795525-795544 MsG0280006351.01.T01:intron 55.0%
CTGTCAGTTAGCCCGTTGGT+AGG - Chr2:794482-794501 None:intergenic 55.0%
GCTTGCAGAGCTGCGAAATG+CGG - Chr2:793831-793850 None:intergenic 55.0%
GGAGCGGCTTCCTTTGCTTT+GGG + Chr2:796022-796041 MsG0280006351.01.T01:CDS 55.0%
GGGGACCACTTGAGGATCTT+TGG - Chr2:792529-792548 None:intergenic 55.0%
TCAAGACAGTGCCTTGCCTC+AGG + Chr2:795369-795388 MsG0280006351.01.T01:CDS 55.0%
TGAAGCTCACGACGAGCCAA+GGG + Chr2:797091-797110 MsG0280006351.01.T01:CDS 55.0%
TTTCTTACGGAGGAGGACGG+CGG - Chr2:792604-792623 None:intergenic 55.0%
! CCAACCTGATGGCGTGTGTT+AGG - Chr2:795528-795547 None:intergenic 55.0%
! CCCGTTGGTAGGTCAGTTAG+AGG - Chr2:794471-794490 None:intergenic 55.0%
! CGGAGAGTTGACGGACGTTA+GGG - Chr2:792584-792603 None:intergenic 55.0%
! GAGCTTCGGGAGTACACACA+TGG + Chr2:796825-796844 MsG0280006351.01.T01:CDS 55.0%
! GGAGAGTTGACGGACGTTAG+GGG - Chr2:792583-792602 None:intergenic 55.0%
!! CACACGCCATCAGGTTGGTT+TGG + Chr2:795530-795549 MsG0280006351.01.T01:intron 55.0%
!! CGTTAGGGGTTTTAGCGGTG+CGG - Chr2:792569-792588 None:intergenic 55.0%
AAATCCGGCCACTCGCCAGA+CGG - Chr2:792862-792881 None:intergenic 60.0%
ATGCTGTTCCGTCTGGCGAG+TGG + Chr2:792851-792870 MsG0280006351.01.T01:CDS 60.0%
GGAGCCTAACACACGCCATC+AGG + Chr2:795521-795540 MsG0280006351.01.T01:CDS 60.0%
! GCGGAGAGTTGACGGACGTT+AGG - Chr2:792585-792604 None:intergenic 60.0%
!! TAGGGGTTTTAGCGGTGCGG+AGG - Chr2:792566-792585 None:intergenic 60.0%
CTGGATCCCTGAGAGCTCCC+AGG - Chr2:795988-796007 None:intergenic 65.0%
GCAGCTGCAACCCAAGCCCT+TGG + Chr2:797155-797174 MsG0280006351.01.T01:CDS 65.0%
GGAGGACGGCGGAGAGTTGA+CGG - Chr2:792593-792612 None:intergenic 65.0%
TGACGGCGTGCGTCGTTGTC+TGG - Chr2:792480-792499 None:intergenic 65.0%
TGTTCCGTCTGGCGAGTGGC+CGG + Chr2:792855-792874 MsG0280006351.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr2 gene 792294 797274 792294 ID=MsG0280006351.01;Name=MsG0280006351.01
Chr2 mRNA 792294 797274 792294 ID=MsG0280006351.01.T01;Parent=MsG0280006351.01;Name=MsG0280006351.01.T01;_AED=0.39;_eAED=0.39;_QI=141|0.9|0.81|1|1|1|11|0|639
Chr2 exon 792294 792709 792294 ID=MsG0280006351.01.T01:exon:837;Parent=MsG0280006351.01.T01
Chr2 exon 792801 792933 792801 ID=MsG0280006351.01.T01:exon:838;Parent=MsG0280006351.01.T01
Chr2 exon 793774 793910 793774 ID=MsG0280006351.01.T01:exon:839;Parent=MsG0280006351.01.T01
Chr2 exon 794019 794064 794019 ID=MsG0280006351.01.T01:exon:840;Parent=MsG0280006351.01.T01
Chr2 exon 795330 795542 795330 ID=MsG0280006351.01.T01:exon:841;Parent=MsG0280006351.01.T01
Chr2 exon 795642 795865 795642 ID=MsG0280006351.01.T01:exon:842;Parent=MsG0280006351.01.T01
Chr2 exon 796000 796144 796000 ID=MsG0280006351.01.T01:exon:843;Parent=MsG0280006351.01.T01
Chr2 exon 796259 796393 796259 ID=MsG0280006351.01.T01:exon:844;Parent=MsG0280006351.01.T01
Chr2 exon 796499 796714 796499 ID=MsG0280006351.01.T01:exon:845;Parent=MsG0280006351.01.T01
Chr2 exon 796804 796893 796804 ID=MsG0280006351.01.T01:exon:846;Parent=MsG0280006351.01.T01
Chr2 exon 796969 797274 796969 ID=MsG0280006351.01.T01:exon:847;Parent=MsG0280006351.01.T01
Chr2 five_prime_UTR 792294 792434 792294 ID=MsG0280006351.01.T01:five_prime_utr;Parent=MsG0280006351.01.T01
Chr2 CDS 792435 792709 792435 ID=MsG0280006351.01.T01:cds;Parent=MsG0280006351.01.T01
Chr2 CDS 792801 792933 792801 ID=MsG0280006351.01.T01:cds;Parent=MsG0280006351.01.T01
Chr2 CDS 793774 793910 793774 ID=MsG0280006351.01.T01:cds;Parent=MsG0280006351.01.T01
Chr2 CDS 794019 794064 794019 ID=MsG0280006351.01.T01:cds;Parent=MsG0280006351.01.T01
Chr2 CDS 795330 795542 795330 ID=MsG0280006351.01.T01:cds;Parent=MsG0280006351.01.T01
Chr2 CDS 795642 795865 795642 ID=MsG0280006351.01.T01:cds;Parent=MsG0280006351.01.T01
Chr2 CDS 796000 796144 796000 ID=MsG0280006351.01.T01:cds;Parent=MsG0280006351.01.T01
Chr2 CDS 796259 796393 796259 ID=MsG0280006351.01.T01:cds;Parent=MsG0280006351.01.T01
Chr2 CDS 796499 796714 796499 ID=MsG0280006351.01.T01:cds;Parent=MsG0280006351.01.T01
Chr2 CDS 796804 796893 796804 ID=MsG0280006351.01.T01:cds;Parent=MsG0280006351.01.T01
Chr2 CDS 796969 797274 796969 ID=MsG0280006351.01.T01:cds;Parent=MsG0280006351.01.T01
Gene Sequence

>MsG0280006351.01.T01

ATGGCGCAGTCTTTGGAGCTTCTGCTGATACAATTCTTGATGCCAGACAACGACGCACGCCGTCAAGCTGAAGATCAAATCAAACGTCTCGCCAAAGATCCTCAAGTGGTCCCCGCTTTGATTCATCACCTCCGCACCGCTAAAACCCCTAACGTCCGTCAACTCTCCGCCGTCCTCCTCCGTAAGAAAATCACCGGTCATTGGTCTAAACTCTCTCCTCAAATCAAACAACTCGTTAAACAATCTCTCATTGATAGCATCACCATGGAACACAGTCCTCCTGTAAGAAAAGCAAGTGCGAATGTTGTTAGCATTGTTGCAAAGTATGCTGTTCCGTCTGGCGAGTGGCCGGATTTGTTTCCGTTTCTTTTTCAATGTAGTCAGAGTCCACAAGAAGATCATCGCGAAGTGGCATTGATTCTCTTCAGTTCTTTAACCGAAACAATTGGGAATGCTTTTCGACCGCATTTCGCAGCTCTGCAAGCTCTTTTACTTAAGTGTTTGCAGGATGAGACTAGCAACCGAGTTCGAGTTGCTGCTCTCAAGGCAGTGGGATCATTTATGGAATTCACTCATGATGGGGATGAAGTGATTAAGTTTCGTGAGTTTATTCCAAGCATCTTAAATGTATCAAGACAGTGCCTTGCCTCAGGAGAAGAAGATGTTGCCATAATTGCTTTTGAAATTTTCGATGAGTTGATTGAATCTCCTGCTCCTCTTCTTGGAGATTCAGTCAAATCCATAGTACAGTTCTCTCTTGAGGTTTGCTCAACTCAAAGTTTGGAGCCTAACACACGCCATCAGGCAATTCAGATTATTTCATGGCTGGCAAAGTACAAGTCCAGTATTTTGAAAAAGCATAAGCTGATCATCCCTATCTTACATGTTTTATGCCCTTTACTTGCTGAATCAACCAATGAAAACGAAGATGATGATCTTGCACCTGATCGAGCTGCTGCAGAAGTTATCGATACAATGGCTTTGAACATCCCAAAACATGTTTTCCCACCGTTTTTGAATTTGCTTCTGGATCCAGAACAAATGGTTAGAGGAGCGGCTTCCTTTGCTTTGGGTCAATTTGCTGAGTACTTACAGCCTGAAATTGTGTCCCATTATGAGAGCGTCCTTCCCTGCATTTTAAATGCTCTTGAGGATGCATCTGATGAAGTAAAGGAAAAGTCATACTATGCTTTGGCTGCTTTTTGTGAGAACATGGGTGAAGAAATCCTTCCTTTTCTAGATCCTTTGATGGGAAGGCTGTTAGCAGCTCTCCAAAACAGTTCTCGTATTTTAAAAGAAACATGCATGTCTGCCATTGGTTCTATTGCTTCTGCTGCAGAGCAAGCTTTCATTCCTTATGCTGAAAGGGTTTTAGAGTTGATGAAAAACTTCATGGTGCTAACTAATGATGAGGATCTCCGTTCACGTGCAAGAGCAACGGAACTAGTAGGAATGGTTGCAATGTCTGTAGGGAAAACGAGAATGGAACCAATATTACCTCCTTATATAGAAGCTGCGATTTCTGGGTTTGGTTTGGAGTACAGTGAGCTTCGGGAGTACACACATGGATTCTTCAGCAACGTTGCCGAGATTTTGGGTGACAGTTTTGCACAGTATCTTCCTCATGTCGTGCCTCTTGCATTTTCTTCCTGCAATCTTGATGATGGTTCTGCGATTGACATTGATGAGTGTGATGATGATATTGCCAATGGATTTGAAGGAGTTTCATCAGACGATGAAGCTCACGACGAGCCAAGGGTTCGTAATATAAGTATTAGAACTGGAGTGTTGGATGAAAAGGCAGCTGCAACCCAAGCCCTTGGCTTATTTGCACAGCATACAACCATCTCTTATGCTCCGTATCCTTTGCCTGGATTACTTTTTGCTTTCTTTTCTAGTCATTCATTTCATGACATATAA
Protein sequence

>MsG0280006351.01.T01

MAQSLELLLIQFLMPDNDARRQAEDQIKRLAKDPQVVPALIHHLRTAKTPNVRQLSAVLLRKKITGHWSKLSPQIKQLVKQSLIDSITMEHSPPVRKASANVVSIVAKYAVPSGEWPDLFPFLFQCSQSPQEDHREVALILFSSLTETIGNAFRPHFAALQALLLKCLQDETSNRVRVAALKAVGSFMEFTHDGDEVIKFREFIPSILNVSRQCLASGEEDVAIIAFEIFDELIESPAPLLGDSVKSIVQFSLEVCSTQSLEPNTRHQAIQIISWLAKYKSSILKKHKLIIPILHVLCPLLAESTNENEDDDLAPDRAAAEVIDTMALNIPKHVFPPFLNLLLDPEQMVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDASDEVKEKSYYALAAFCENMGEEILPFLDPLMGRLLAALQNSSRILKETCMSAIGSIASAAEQAFIPYAERVLELMKNFMVLTNDEDLRSRARATELVGMVAMSVGKTRMEPILPPYIEAAISGFGLEYSELREYTHGFFSNVAEILGDSFAQYLPHVVPLAFSSCNLDDGSAIDIDECDDDIANGFEGVSSDDEAHDEPRVRNISIRTGVLDEKAAATQALGLFAQHTTISYAPYPLPGLLFAFFSSHSFHDI*