AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280006777.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280006777.01.T01 MTR_2g014680 93.831 308 17 2 1 307 1 307 0.0 607
MsG0280006777.01.T01 MTR_4g088245 62.270 326 86 9 1 302 1 313 1.83e-134 391
MsG0280006777.01.T01 MTR_8g069160 69.912 226 47 2 1 208 1 223 7.03e-113 333
MsG0280006777.01.T01 MTR_4g078875 59.155 284 101 7 1 279 1 274 2.72e-107 320
MsG0280006777.01.T01 MTR_2g090735 58.219 292 109 6 1 290 1 281 7.44e-105 314
MsG0280006777.01.T01 MTR_8g102240 61.572 229 74 5 8 226 3 227 3.09e-87 276
MsG0280006777.01.T01 MTR_8g102240 61.572 229 74 5 8 226 3 227 3.18e-87 276
MsG0280006777.01.T01 MTR_5g053430 58.763 194 77 2 27 220 34 224 2.87e-71 233
MsG0280006777.01.T01 MTR_5g053430 58.763 194 77 2 27 220 34 224 3.13e-71 233
MsG0280006777.01.T01 MTR_1g093680 42.025 326 170 5 25 338 32 350 3.27e-70 231
MsG0280006777.01.T01 MTR_7g033320 56.757 185 73 3 31 212 35 215 5.21e-66 221
MsG0280006777.01.T01 MTR_1g093670 47.291 203 86 3 32 233 7 189 3.97e-48 169
MsG0280006777.01.T01 MTR_5g095910 77.778 72 16 0 402 473 1 72 5.39e-27 115
MsG0280006777.01.T01 MTR_2g014820 80.000 70 14 0 404 473 3 72 5.66e-26 112
MsG0280006777.01.T01 MTR_2g014840 75.000 72 18 0 402 473 1 72 2.63e-25 110
MsG0280006777.01.T01 MTR_2g014830 65.278 72 25 0 402 473 1 72 1.63e-23 97.1
MsG0280006777.01.T01 MTR_2g014730 70.833 72 21 0 402 473 1 72 2.61e-23 104
MsG0280006777.01.T01 MTR_4g078895 60.000 65 24 1 30 94 16 78 4.68e-19 82.0
MsG0280006777.01.T01 MTR_6g070940 50.000 80 34 1 308 381 74 153 2.10e-17 79.7
MsG0280006777.01.T01 MTR_3g014510 56.338 71 31 0 403 473 1 71 2.40e-17 85.9
MsG0280006777.01.T01 MTR_3g014360 54.930 71 32 0 403 473 1 71 1.59e-16 83.2
MsG0280006777.01.T01 MTR_3g014470 54.930 71 32 0 403 473 1 71 2.32e-16 82.4
MsG0280006777.01.T01 MTR_3g014390 53.521 71 33 0 403 473 1 71 3.15e-16 82.4
MsG0280006777.01.T01 MTR_3g020890 58.824 68 28 0 406 473 5 72 4.57e-16 81.6
MsG0280006777.01.T01 MTR_2g014700 68.889 45 14 0 118 162 44 88 1.16e-15 72.8
MsG0280006777.01.T01 MTR_3g040600 34.921 126 48 3 289 381 55 179 3.42e-15 74.3
MsG0280006777.01.T01 MTR_7g011130 30.964 197 119 4 36 231 2 182 1.09e-14 75.9
MsG0280006777.01.T01 MTR_6g084430 32.317 164 92 6 53 213 5 152 1.59e-14 74.7
MsG0280006777.01.T01 MTR_3g070030 32.484 157 89 4 41 196 7 147 3.03e-14 74.3
MsG0280006777.01.T01 MTR_3g014530 50.000 68 34 0 406 473 1 68 5.08e-14 70.1
MsG0280006777.01.T01 MTR_0179s0030 41.584 101 27 1 303 371 145 245 2.01e-13 70.9
MsG0280006777.01.T01 MTR_7g085260 31.667 180 92 9 46 212 10 171 4.13e-13 71.2
MsG0280006777.01.T01 MTR_3g014500 42.254 71 41 0 405 475 5 75 6.57e-13 67.4
MsG0280006777.01.T01 MTR_6g084550 44.444 72 40 0 402 473 1 72 6.74e-13 71.6
MsG0280006777.01.T01 MTR_3g022390 83.333 36 6 0 193 228 38 73 9.77e-13 63.9
MsG0280006777.01.T01 MTR_3g435150 34.507 142 76 5 53 193 16 141 1.06e-12 69.3
MsG0280006777.01.T01 MTR_3g028040 45.833 72 39 0 402 473 1 72 1.13e-12 70.9
MsG0280006777.01.T01 MTR_3g031290 36.154 130 46 2 274 371 7 131 1.50e-12 68.6
MsG0280006777.01.T01 MTR_3g435720 44.286 70 39 0 404 473 3 72 1.58e-12 70.5
MsG0280006777.01.T01 MTR_1g008740 32.143 168 91 7 53 213 13 164 1.72e-12 68.9
MsG0280006777.01.T01 MTR_0083s0110 41.429 70 41 0 404 473 3 72 1.72e-12 66.2
MsG0280006777.01.T01 MTR_3g035960 45.833 72 39 0 402 473 1 72 2.01e-12 70.1
MsG0280006777.01.T01 MTR_3g033240 44.286 70 39 0 404 473 3 72 2.26e-12 70.1
MsG0280006777.01.T01 MTR_3g032800 42.857 70 40 0 404 473 3 72 4.96e-12 68.9
MsG0280006777.01.T01 MTR_0267s0070 54.167 72 33 0 403 474 1 72 7.50e-12 68.6
MsG0280006777.01.T01 MTR_7g005280 33.333 159 74 9 41 193 7 139 9.13e-12 65.9
MsG0280006777.01.T01 MTR_2g063777 41.429 70 41 0 404 473 3 72 1.07e-11 67.8
MsG0280006777.01.T01 MTR_3g109340 30.387 181 104 7 38 213 8 171 1.16e-11 66.6
MsG0280006777.01.T01 MTR_3g109340 30.220 182 104 7 38 213 8 172 1.38e-11 66.2
MsG0280006777.01.T01 MTR_3g007190 50.704 71 35 0 403 473 1 71 1.95e-11 67.0
MsG0280006777.01.T01 MTR_8g099750 32.667 150 78 8 48 193 9 139 2.62e-11 63.9
MsG0280006777.01.T01 MTR_1g037730 52.778 72 34 0 402 473 1 72 4.04e-11 65.1
MsG0280006777.01.T01 MTR_3g032370 44.776 67 37 0 407 473 4 70 4.63e-11 65.9
MsG0280006777.01.T01 MTR_3g032960 41.667 72 42 0 402 473 1 72 5.08e-11 65.9
MsG0280006777.01.T01 MTR_3g093040 28.643 199 112 9 50 244 105 277 5.08e-11 64.3
MsG0280006777.01.T01 MTR_8g038570 41.791 67 39 0 407 473 6 72 7.47e-11 65.1
MsG0280006777.01.T01 MTR_2g078700 30.994 171 91 8 53 213 23 176 7.52e-11 64.3
MsG0280006777.01.T01 MTR_3g014040 52.778 72 34 0 402 473 1 72 8.38e-11 65.1
MsG0280006777.01.T01 MTR_3g030960 40.278 72 43 0 402 473 1 72 9.90e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280006777.01.T01 AT4G28500 64.069 231 72 3 1 222 1 229 7.90e-106 317
MsG0280006777.01.T01 AT1G28470 58.246 285 79 7 1 249 1 281 5.20e-105 315
MsG0280006777.01.T01 AT4G29230 62.332 223 69 3 6 217 2 220 3.49e-90 282
MsG0280006777.01.T01 AT4G29230 62.332 223 69 3 6 217 2 220 2.03e-89 281
MsG0280006777.01.T01 AT4G29230 61.435 223 70 3 6 217 2 219 2.69e-88 279
MsG0280006777.01.T01 AT5G56620 59.091 220 75 5 9 217 3 218 1.45e-80 255
MsG0280006777.01.T01 AT5G56620 59.091 220 75 5 9 217 3 218 1.63e-80 256
MsG0280006777.01.T01 AT5G56620 59.091 220 75 5 9 217 3 218 2.38e-80 256
MsG0280006777.01.T01 AT1G25580 56.021 191 75 4 27 217 34 215 1.15e-66 221
MsG0280006777.01.T01 AT5G14490 50.000 200 95 4 30 228 34 229 3.62e-54 183
MsG0280006777.01.T01 AT5G14490 50.000 200 95 4 30 228 34 229 8.07e-54 184
MsG0280006777.01.T01 AT5G14490 50.000 200 95 4 30 228 37 232 8.81e-54 184
MsG0280006777.01.T01 AT5G14490 50.000 200 95 4 30 228 37 232 1.06e-53 184
MsG0280006777.01.T01 AT3G01600 48.925 186 91 3 30 214 34 216 1.22e-48 171
MsG0280006777.01.T01 AT3G04060 32.609 184 98 7 41 215 8 174 8.02e-19 87.8
MsG0280006777.01.T01 AT5G18270 34.054 185 93 10 41 215 10 175 2.69e-16 80.5
MsG0280006777.01.T01 AT5G18270 34.054 185 93 10 41 215 10 175 4.39e-16 79.7
MsG0280006777.01.T01 AT3G18400 33.099 142 78 5 53 193 5 130 1.12e-13 72.4
MsG0280006777.01.T01 AT1G33060 30.645 186 94 9 40 212 11 174 1.09e-12 70.9
MsG0280006777.01.T01 AT1G33060 30.645 186 94 9 40 212 11 174 1.11e-12 70.9
MsG0280006777.01.T01 AT4G35580 31.551 187 93 10 46 219 2 166 1.82e-12 69.7
MsG0280006777.01.T01 AT4G35580 31.551 187 93 10 46 219 2 166 2.16e-12 69.7
MsG0280006777.01.T01 AT4G35580 31.551 187 93 10 46 219 2 166 2.45e-12 69.3
MsG0280006777.01.T01 AT3G12977 25.532 235 128 10 42 268 6 201 1.54e-11 65.5
MsG0280006777.01.T01 AT3G29035 33.566 143 76 5 53 193 24 149 2.16e-11 65.5
MsG0280006777.01.T01 AT2G24430 28.994 169 98 6 52 214 15 167 3.71e-11 64.7
MsG0280006777.01.T01 AT2G24430 28.994 169 98 6 52 214 15 167 3.71e-11 64.7
MsG0280006777.01.T01 AT2G33480 29.947 187 97 10 41 221 7 165 4.02e-11 63.9
MsG0280006777.01.T01 AT2G33480 32.484 157 76 8 41 193 7 137 4.85e-11 63.9
MsG0280006777.01.T01 AT1G76420 29.834 181 101 8 52 224 21 183 9.16e-11 63.5

Find 95 sgRNAs with CRISPR-Local

Find 310 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAATCTCTTACATTGTTAA+TGG 0.179782 2:-6078253 None:intergenic
GAAAACCAGAGAAGACTAAT+TGG 0.273159 2:+6078127 MsG0280006777.01.T01:CDS
GAAACAAGATGGCACAAAAC+TGG 0.293534 2:+6078021 MsG0280006777.01.T01:CDS
TCTAGTACTTCTACATCATT+TGG 0.314489 2:-6076256 None:intergenic
GTGGATTCAGTTCGTGGAAT+TGG 0.342922 2:+6079774 MsG0280006777.01.T01:CDS
GAAGGGATTTAAGAAGATAT+TGG 0.357820 2:+6078077 MsG0280006777.01.T01:CDS
CCATTGAAGTTGTTCTCAAT+AGG 0.382062 2:+6080684 MsG0280006777.01.T01:CDS
TGTAGAAGTACTAGAGCATT+TGG 0.390413 2:+6076264 MsG0280006777.01.T01:CDS
ATCACCCAATTAGTCTTCTC+TGG 0.399788 2:-6078132 None:intergenic
TCACTTTGAACAGCCATGTT+TGG 0.400365 2:-6078432 None:intergenic
ATTCACTTTGATCGATATCA+TGG 0.404744 2:+6080628 MsG0280006777.01.T01:CDS
AACTATTATTCGCTTATCAA+TGG 0.414728 2:+6078458 MsG0280006777.01.T01:CDS
GGGTGGAGTTAATGAATTGC+CGG 0.417191 2:+6076207 MsG0280006777.01.T01:intron
CATGTTGTCTAGGCTGTGTC+TGG 0.424066 2:-6078224 None:intergenic
CACATTAAGAGCTACATTGT+TGG 0.427511 2:-6078328 None:intergenic
TTATCATCTTTCGACATCTC+AGG 0.429193 2:+6079740 MsG0280006777.01.T01:CDS
TGTTCCTGTTGTGTATGCTT+TGG 0.432715 2:-6077959 None:intergenic
CACTATGTATTCGCTAGGTT+GGG 0.444176 2:+6079542 MsG0280006777.01.T01:CDS
CCACTATGTATTCGCTAGGT+TGG 0.447994 2:+6079541 MsG0280006777.01.T01:CDS
ATATGCATGTTGGTCATAGC+AGG 0.451891 2:+6078385 MsG0280006777.01.T01:CDS
CTAGTACTTCTACATCATTT+GGG 0.458512 2:-6076255 None:intergenic
GAGTTCATACCAACGCTTCA+AGG 0.459148 2:+6076334 MsG0280006777.01.T01:CDS
GGGTCAAATTTCACTCCAGC+TGG 0.465906 2:-6076235 None:intergenic
GAAGAAAGTTGATGTCGATT+TGG 0.467990 2:+6080742 MsG0280006777.01.T01:CDS
CTTCTTCATTCATACCAAGA+TGG 0.471328 2:-6078164 None:intergenic
CCTGTTGTGTATGCTTTGGA+AGG 0.474842 2:-6077955 None:intergenic
CCTATTGAGAACAACTTCAA+TGG 0.476109 2:-6080684 None:intergenic
GCCGCATGAGGGGCATTCAA+TGG 0.476343 2:-6075896 None:intergenic
TACACCAACTATTGCAAAGA+AGG 0.482059 2:+6078105 MsG0280006777.01.T01:CDS
TGCTATGACCAACATGCATA+TGG 0.484398 2:-6078383 None:intergenic
AAGACTCTGCTGTTAACAAC+TGG 0.484841 2:+6080834 MsG0280006777.01.T01:CDS
CCTTCCAAAGCATACACAAC+AGG 0.484981 2:+6077955 MsG0280006777.01.T01:CDS
CCAACGCTTCAAGGAGAGAA+TGG 0.494652 2:+6076343 MsG0280006777.01.T01:CDS
TAATCGATTATTTGAGTTGG+CGG 0.496582 2:+6079497 MsG0280006777.01.T01:CDS
CCTGCGGTGGATTCAGTTCG+TGG 0.497285 2:+6079768 MsG0280006777.01.T01:CDS
GAATTGCCGGGGTTACCAGC+TGG 0.498475 2:+6076220 MsG0280006777.01.T01:CDS
GATATCATGGCAACAGTTGT+GGG 0.499413 2:+6080641 MsG0280006777.01.T01:CDS
GGTGGAGTTAATGAATTGCC+GGG 0.501114 2:+6076208 MsG0280006777.01.T01:CDS
GTTTAATCGATTATTTGAGT+TGG 0.502903 2:+6079494 MsG0280006777.01.T01:CDS
CCATTCTCTCCTTGAAGCGT+TGG 0.505404 2:-6076343 None:intergenic
TTCAATATTATGGCCGCATG+AGG 0.506854 2:-6075908 None:intergenic
AAAACCAGAGAAGACTAATT+GGG 0.508959 2:+6078128 MsG0280006777.01.T01:CDS
GTATAACCCTCTACAAGGTC+AGG 0.515322 2:-6079705 None:intergenic
AAAATAATCAACAAAGGAAG+TGG 0.515719 2:+6078282 MsG0280006777.01.T01:CDS
TCAATATTATGGCCGCATGA+GGG 0.518397 2:-6075907 None:intergenic
GTTGCAGGAGTTAGCAAAGA+TGG 0.520564 2:+6077907 MsG0280006777.01.T01:intron
ATGGAATTACCATGTTGTCT+AGG 0.524147 2:-6078234 None:intergenic
AACATGGCTGTTCAAAGTGA+TGG 0.524451 2:+6078435 MsG0280006777.01.T01:CDS
GTAGAGGGTTATACAGTTCG+TGG 0.524471 2:+6079714 MsG0280006777.01.T01:CDS
ACACACCCAGCACAATTACC+AGG 0.525873 2:+6076376 MsG0280006777.01.T01:CDS
ATTAAGAGCTACATTGTTGG+AGG 0.531511 2:-6078325 None:intergenic
GTGATGCATCAATACCATCT+TGG 0.536511 2:+6078150 MsG0280006777.01.T01:CDS
ACCTTGCAGATCAGTGGCAT+TGG 0.537499 2:+6079679 MsG0280006777.01.T01:intron
CGATATCATGGCAACAGTTG+TGG 0.539684 2:+6080640 MsG0280006777.01.T01:CDS
AAGAAGGAATTGAAACAAGA+TGG 0.540463 2:+6078010 MsG0280006777.01.T01:CDS
TGGGAGGAAGATGGTGACAT+TGG 0.541636 2:+6079561 MsG0280006777.01.T01:CDS
ATCAACAAAGGAAGTGGCCA+TGG 0.542226 2:+6078288 MsG0280006777.01.T01:CDS
ATGTTTGGTATAATTAGTTG+TGG 0.542896 2:-6078417 None:intergenic
ATGAATGAAGAAGAAAGAGA+TGG 0.549873 2:+6078174 MsG0280006777.01.T01:CDS
AAACAAGATGGCACAAAACT+GGG 0.551473 2:+6078022 MsG0280006777.01.T01:CDS
GTAGCCACTATGTATTCGCT+AGG 0.554295 2:+6079537 MsG0280006777.01.T01:CDS
CTCTGCTGTTAACAACTGGC+TGG 0.554695 2:+6080838 MsG0280006777.01.T01:CDS
TTGGCAGCCTGACCTTGTAG+AGG 0.555228 2:+6079698 MsG0280006777.01.T01:CDS
TTCACTCCAGCTGGTAACCC+CGG 0.559582 2:-6076226 None:intergenic
AAGGTTCACACTGATGAAGA+AGG 0.564034 2:+6077994 MsG0280006777.01.T01:CDS
CAATATTATGGCCGCATGAG+GGG 0.567135 2:-6075906 None:intergenic
AGGAACAAGGAAAAGAAGAA+AGG 0.568088 2:+6077975 MsG0280006777.01.T01:CDS
CGATTAAACCGCATACAGAA+AGG 0.569240 2:-6079480 None:intergenic
CCAACCTAGCGAATACATAG+TGG 0.569247 2:-6079541 None:intergenic
GCGGTGTTCCTTTCTGTATG+CGG 0.569981 2:+6079472 MsG0280006777.01.T01:CDS
CGACATCAACTTTCTTCCCA+CGG 0.578949 2:-6080736 None:intergenic
GAGTTTGTTGACTTGATCCG+TGG 0.579885 2:+6080719 MsG0280006777.01.T01:CDS
TGGCAGCCTGACCTTGTAGA+GGG 0.583156 2:+6079699 MsG0280006777.01.T01:CDS
CAACAATGTAGCTCTTAATG+TGG 0.583204 2:+6078329 MsG0280006777.01.T01:CDS
TCGCTAGGTTGGGAGGAAGA+TGG 0.587275 2:+6079552 MsG0280006777.01.T01:CDS
GGTATGAACTCATCAATAAG+TGG 0.587548 2:-6076322 None:intergenic
CGGATCAAGTCAACAAACTC+AGG 0.587908 2:-6080716 None:intergenic
CAGACACAGCCTAGACAACA+TGG 0.593480 2:+6078225 MsG0280006777.01.T01:CDS
AATTATGACCATATGCATGT+TGG 0.599378 2:+6078375 MsG0280006777.01.T01:CDS
TATGTATTCGCTAGGTTGGG+AGG 0.599795 2:+6079545 MsG0280006777.01.T01:CDS
ATCTCAGGAGCATCCTGCGG+TGG 0.603087 2:+6079755 MsG0280006777.01.T01:CDS
ACCATTGAATGCCCCTCATG+CGG 0.616642 2:+6075895 MsG0280006777.01.T01:CDS
AGAAGTACTAGAGCATTTGG+AGG 0.620573 2:+6076267 MsG0280006777.01.T01:CDS
ACAACTAATTATACCAAACA+TGG 0.621621 2:+6078419 MsG0280006777.01.T01:CDS
CCACGAACTGAATCCACCGC+AGG 0.629156 2:-6079768 None:intergenic
TTGATGTCGATTTGGTGCAA+AGG 0.630153 2:+6080750 MsG0280006777.01.T01:CDS
GGACTAACCTTGCAGATCAG+TGG 0.632628 2:+6079673 MsG0280006777.01.T01:intron
AAGCATACACAACAGGAACA+AGG 0.635238 2:+6077962 MsG0280006777.01.T01:CDS
AGGCTGCACTGTTATTACCA+TGG 0.642479 2:-6078305 None:intergenic
AGAGATTAAGAACTATGGCA+TGG 0.652933 2:+6075797 None:intergenic
GACATCTCAGGAGCATCCTG+CGG 0.653890 2:+6079752 MsG0280006777.01.T01:CDS
TATGCATGTTGGTCATAGCA+GGG 0.654809 2:+6078386 MsG0280006777.01.T01:CDS
GAACTGTATAACCCTCTACA+AGG 0.672966 2:-6079710 None:intergenic
GTGGAGTTAATGAATTGCCG+GGG 0.680068 2:+6076209 MsG0280006777.01.T01:CDS
AGTTTGTTGACTTGATCCGT+GGG 0.704616 2:+6080720 MsG0280006777.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATAAATTTTTTTTTTTTT+TGG + Chr2:6076555-6076574 MsG0280006777.01.T01:intron 0.0%
!! AAAGATATATGTAAAATAAA+TGG - Chr2:6079148-6079167 None:intergenic 10.0%
!! TTAAATTAAATATAAAAACC+TGG - Chr2:6076397-6076416 None:intergenic 10.0%
!!! ATAAATTCAATCATTTTTTT+TGG - Chr2:6079417-6079436 None:intergenic 10.0%
!!! ATAACTTAGATTTTTTTTTT+TGG - Chr2:6079905-6079924 None:intergenic 10.0%
!!! GTTTTTTTTTTTTTTTTTGA+AGG + Chr2:6076087-6076106 MsG0280006777.01.T01:intron 10.0%
!!! TGAAATAGATTTTAATTATA+AGG + Chr2:6076624-6076643 MsG0280006777.01.T01:intron 10.0%
!!! TTACATATATCTTTTTTTTT+TGG + Chr2:6079154-6079173 MsG0280006777.01.T01:intron 10.0%
!! AAAGAAAATTATTTGTCAAT+TGG + Chr2:6076728-6076747 MsG0280006777.01.T01:intron 15.0%
!! AAGAAAATTATTTGTCAATT+GGG + Chr2:6076729-6076748 MsG0280006777.01.T01:intron 15.0%
!! ATTAAAATGATTTAGAGATT+TGG + Chr2:6076436-6076455 MsG0280006777.01.T01:intron 15.0%
!! ATTCAAGAAACATAATTAAT+TGG - Chr2:6078821-6078840 None:intergenic 15.0%
!! TAAACTAAAGGAATTAATAT+CGG - Chr2:6076150-6076169 None:intergenic 15.0%
!! TAATATTGAAGTAAAAAATC+AGG + Chr2:6075921-6075940 MsG0280006777.01.T01:CDS 15.0%
!! TATGAAAAAATAATCAACAA+AGG + Chr2:6078276-6078295 MsG0280006777.01.T01:CDS 15.0%
!! TATGTTTGTAAAAAAAAGTA+TGG + Chr2:6078945-6078964 MsG0280006777.01.T01:intron 15.0%
!! TTAATATTACATTGAGAAAA+AGG + Chr2:6077818-6077837 MsG0280006777.01.T01:intron 15.0%
!!! AATAGATTTTAATTATAAGG+CGG + Chr2:6076627-6076646 MsG0280006777.01.T01:intron 15.0%
!!! GATTTTTTACTTCAATATTA+TGG - Chr2:6075921-6075940 None:intergenic 15.0%
!! AACAGGCTAATTAAATTTAA+TGG + Chr2:6080013-6080032 MsG0280006777.01.T01:intron 20.0%
!! AACATAATTAATTGGAAAAG+AGG - Chr2:6078813-6078832 None:intergenic 20.0%
!! AAGTGAATAAGAATTTGTAA+AGG - Chr2:6077618-6077637 None:intergenic 20.0%
!! AATTTGTAAAGGAACTTATA+TGG - Chr2:6077607-6077626 None:intergenic 20.0%
!! ACATAATTAATTGGAAAAGA+GGG - Chr2:6078812-6078831 None:intergenic 20.0%
!! AGAAAATTATTTGTCAATTG+GGG + Chr2:6076730-6076749 MsG0280006777.01.T01:intron 20.0%
!! ATTCAAGATAATTGGAATTT+AGG + Chr2:6078614-6078633 MsG0280006777.01.T01:intron 20.0%
!! CACACAAATTAATAAACTAA+AGG - Chr2:6076162-6076181 None:intergenic 20.0%
!! GTGATACATTATTAATCAAA+AGG - Chr2:6077277-6077296 None:intergenic 20.0%
!! TATATAATATATCACCCATT+GGG + Chr2:6080327-6080346 MsG0280006777.01.T01:intron 20.0%
!! TCACTAACATTTACATTTAT+GGG + Chr2:6078561-6078580 MsG0280006777.01.T01:intron 20.0%
!! TTCACTAACATTTACATTTA+TGG + Chr2:6078560-6078579 MsG0280006777.01.T01:intron 20.0%
!!! ATTAATTAATTTGATGCATG+CGG - Chr2:6076524-6076543 None:intergenic 20.0%
!!! ATTTTATAACCTCAAATAAG+TGG - Chr2:6079239-6079258 None:intergenic 20.0%
!!! ATTTTCATAAGTTAGTAGAA+AGG - Chr2:6076772-6076791 None:intergenic 20.0%
!!! ATTTTTTTTTTTTGGTGAAC+AGG + Chr2:6079996-6080015 MsG0280006777.01.T01:intron 20.0%
!!! GAAATATATTGACTTGAAAA+CGG + Chr2:6077749-6077768 MsG0280006777.01.T01:intron 20.0%
!!! TAATAAAGTACTCTAAATGA+AGG - Chr2:6078908-6078927 None:intergenic 20.0%
!!! TAATTTGTTACTGTAACATT+AGG + Chr2:6077124-6077143 MsG0280006777.01.T01:intron 20.0%
!!! TATCTTATTGACTTTCAAAA+CGG - Chr2:6080392-6080411 None:intergenic 20.0%
!!! TGATTATTTTTTGTGAATTG+TGG + Chr2:6076836-6076855 MsG0280006777.01.T01:intron 20.0%
!!! TTGATGATTTTTGATACATA+GGG + Chr2:6076187-6076206 MsG0280006777.01.T01:intron 20.0%
!!! TTTGATGATTTTTGATACAT+AGG + Chr2:6076186-6076205 MsG0280006777.01.T01:intron 20.0%
!!! TTTTCATAAGTTAGTAGAAA+GGG - Chr2:6076771-6076790 None:intergenic 20.0%
! AAAATAATCAACAAAGGAAG+TGG + Chr2:6078282-6078301 MsG0280006777.01.T01:CDS 25.0%
! AACTATTATTCGCTTATCAA+TGG + Chr2:6078458-6078477 MsG0280006777.01.T01:CDS 25.0%
! ACAACTAATTATACCAAACA+TGG + Chr2:6078419-6078438 MsG0280006777.01.T01:CDS 25.0%
! ATGTTTGGTATAATTAGTTG+TGG - Chr2:6078420-6078439 None:intergenic 25.0%
! ATTACTTCATGATGTTTCTT+TGG + Chr2:6079650-6079669 MsG0280006777.01.T01:intron 25.0%
! CATTGCATGTGTTAATTATT+GGG + Chr2:6076473-6076492 MsG0280006777.01.T01:intron 25.0%
! CTATATAATATATCACCCAT+TGG + Chr2:6080326-6080345 MsG0280006777.01.T01:intron 25.0%
! GTACCAAAAGAAATAGAATT+GGG - Chr2:6077299-6077318 None:intergenic 25.0%
! GTTACAGTAACAAATTACTT+AGG - Chr2:6077121-6077140 None:intergenic 25.0%
! GTTTAATCGATTATTTGAGT+TGG + Chr2:6079494-6079513 MsG0280006777.01.T01:CDS 25.0%
! TGAATCTCTTACATTGTTAA+TGG - Chr2:6078256-6078275 None:intergenic 25.0%
! TGAATTACTAATAAGAGAGA+AGG - Chr2:6077502-6077521 None:intergenic 25.0%
! TGAATTTATCTCACTGAATA+AGG + Chr2:6079428-6079447 MsG0280006777.01.T01:intron 25.0%
! TGTACCAAAAGAAATAGAAT+TGG - Chr2:6077300-6077319 None:intergenic 25.0%
! TGTTGAAGATAAAAACTTAG+AGG - Chr2:6077438-6077457 None:intergenic 25.0%
! TTACTTCATGATGTTTCTTT+GGG + Chr2:6079651-6079670 MsG0280006777.01.T01:intron 25.0%
! TTTGATCTTAAATCTTGCTA+AGG + Chr2:6075980-6075999 MsG0280006777.01.T01:intron 25.0%
!! AAAAAAGTATGGACAATACT+TGG + Chr2:6078956-6078975 MsG0280006777.01.T01:intron 25.0%
!! AAAAAGTATGGACAATACTT+GGG + Chr2:6078957-6078976 MsG0280006777.01.T01:intron 25.0%
!! AAACATTGTTCCTTAAGTTT+TGG + Chr2:6077175-6077194 MsG0280006777.01.T01:intron 25.0%
!! AACATTTTGTTAATGTTGAG+TGG + Chr2:6080474-6080493 MsG0280006777.01.T01:intron 25.0%
!! AAGTTTTTATCTTCAACACT+TGG + Chr2:6077440-6077459 MsG0280006777.01.T01:intron 25.0%
!! ATTTAGGATATACTATATGG+TGG + Chr2:6078630-6078649 MsG0280006777.01.T01:intron 25.0%
!! GGAATTTAGGATATACTATA+TGG + Chr2:6078627-6078646 MsG0280006777.01.T01:intron 25.0%
!!! ACACAAAAAAAAAAGGTACT+TGG - Chr2:6077205-6077224 None:intergenic 25.0%
!!! ACTAGAGCAATTTTTTCTAA+TGG + Chr2:6078048-6078067 MsG0280006777.01.T01:CDS 25.0%
!!! AGTACCTTTTTTTTTTGTGT+TGG + Chr2:6077205-6077224 MsG0280006777.01.T01:intron 25.0%
!!! GACACTTATTTTAAAAGAGA+CGG + Chr2:6077847-6077866 MsG0280006777.01.T01:intron 25.0%
!!! GTACCTTTTTTTTTTGTGTT+GGG + Chr2:6077206-6077225 MsG0280006777.01.T01:intron 25.0%
!!! GTTTTGAAAGTCAATAAGAT+AGG + Chr2:6080391-6080410 MsG0280006777.01.T01:intron 25.0%
!!! TCAAATTGCTATTGATGTTT+TGG - Chr2:6077091-6077110 None:intergenic 25.0%
AAAAATCAGGTACTAATCAG+TGG + Chr2:6075934-6075953 MsG0280006777.01.T01:intron 30.0%
AAAACCAGAGAAGACTAATT+GGG + Chr2:6078128-6078147 MsG0280006777.01.T01:CDS 30.0%
AAACCAATGAATGCTTGAAT+TGG + Chr2:6076956-6076975 MsG0280006777.01.T01:intron 30.0%
AAGAAAGCTCAGGAATATTT+GGG - Chr2:6080098-6080117 None:intergenic 30.0%
AAGAAGGAATTGAAACAAGA+TGG + Chr2:6078010-6078029 MsG0280006777.01.T01:CDS 30.0%
AATGAGTAAAAGAGCAAATG+TGG - Chr2:6080228-6080247 None:intergenic 30.0%
AATTATGACCATATGCATGT+TGG + Chr2:6078375-6078394 MsG0280006777.01.T01:CDS 30.0%
ACTTTCAAAACGGTAGAAAT+TGG - Chr2:6080382-6080401 None:intergenic 30.0%
AGATTGATTATTACACCCAA+TGG - Chr2:6080345-6080364 None:intergenic 30.0%
ATGAATGAAGAAGAAAGAGA+TGG + Chr2:6078174-6078193 MsG0280006777.01.T01:CDS 30.0%
ATGAGTAAAAGAGCAAATGT+GGG - Chr2:6080227-6080246 None:intergenic 30.0%
ATTCACTTTGATCGATATCA+TGG + Chr2:6080628-6080647 MsG0280006777.01.T01:CDS 30.0%
ATTGTTACCTAAAATGTTGC+AGG + Chr2:6077892-6077911 MsG0280006777.01.T01:intron 30.0%
CAACATTAACCACTTATTTG+AGG + Chr2:6079227-6079246 MsG0280006777.01.T01:intron 30.0%
CATCCCAACACAAAAAAAAA+AGG - Chr2:6077212-6077231 None:intergenic 30.0%
CATTTATGGGATTGTAATGA+AGG + Chr2:6078574-6078593 MsG0280006777.01.T01:intron 30.0%
CTAGTACTTCTACATCATTT+GGG - Chr2:6076258-6076277 None:intergenic 30.0%
GAAGGGATTTAAGAAGATAT+TGG + Chr2:6078077-6078096 MsG0280006777.01.T01:CDS 30.0%
GATTGATTATTACACCCAAT+GGG - Chr2:6080344-6080363 None:intergenic 30.0%
GCATTGCATGTGTTAATTAT+TGG + Chr2:6076472-6076491 MsG0280006777.01.T01:intron 30.0%
TAAATAAAGATCTCAGTCGT+AGG - Chr2:6078784-6078803 None:intergenic 30.0%
TAATGAAGGAAGGAATAAGT+TGG + Chr2:6078588-6078607 MsG0280006777.01.T01:intron 30.0%
TACTTCATGATGTTTCTTTG+GGG + Chr2:6079652-6079671 MsG0280006777.01.T01:intron 30.0%
TCTAGTACTTCTACATCATT+TGG - Chr2:6076259-6076278 None:intergenic 30.0%
TGGTGGAAATAGAGTAATTA+AGG - Chr2:6077539-6077558 None:intergenic 30.0%
TGTGAATTGTGGAAAAAACA+AGG + Chr2:6076847-6076866 MsG0280006777.01.T01:intron 30.0%
! ACGACATACAGTATACTTTT+TGG - Chr2:6079118-6079137 None:intergenic 30.0%
! ATGATTTTTGATACATAGGG+TGG + Chr2:6076190-6076209 MsG0280006777.01.T01:intron 30.0%
! GTTGGCTTATTCAAGATAAT+TGG + Chr2:6078606-6078625 MsG0280006777.01.T01:intron 30.0%
! TTTTCCTTCTTTGCAATAGT+TGG - Chr2:6078112-6078131 None:intergenic 30.0%
!! ACTTGGTTTTCCAAAACTTA+AGG - Chr2:6077188-6077207 None:intergenic 30.0%
!! CGACATACAGTATACTTTTT+GGG - Chr2:6079117-6079136 None:intergenic 30.0%
!! GTACTTTTTATTGCAAGACT+AGG + Chr2:6079450-6079469 MsG0280006777.01.T01:CDS 30.0%
!! TAATCGATTATTTGAGTTGG+CGG + Chr2:6079497-6079516 MsG0280006777.01.T01:CDS 30.0%
!! TCACCCAATTCTATTTCTTT+TGG + Chr2:6077293-6077312 MsG0280006777.01.T01:intron 30.0%
!!! TCACTGTCTTAGTTTTGTTT+CGG - Chr2:6080542-6080561 None:intergenic 30.0%
!!! TTTTCTAATGGTGTTGTGAA+GGG + Chr2:6078060-6078079 MsG0280006777.01.T01:CDS 30.0%
!!! TTTTTCTAATGGTGTTGTGA+AGG + Chr2:6078059-6078078 MsG0280006777.01.T01:CDS 30.0%
AAAAACCTGGTAATTGTGCT+GGG - Chr2:6076384-6076403 None:intergenic 35.0%
AAACAAGATGGCACAAAACT+GGG + Chr2:6078022-6078041 MsG0280006777.01.T01:CDS 35.0%
AAACTAACCAGCGAAAGATA+AGG - Chr2:6080255-6080274 None:intergenic 35.0%
AAATGCCGAAATTGTTAGAC+CGG + Chr2:6079295-6079314 MsG0280006777.01.T01:intron 35.0%
AACACATGCAATGCATCAAA+CGG - Chr2:6076466-6076485 None:intergenic 35.0%
AACTAACCAGCGAAAGATAA+GGG - Chr2:6080254-6080273 None:intergenic 35.0%
ACTCTGGTTAAATCTGATGT+TGG + Chr2:6076065-6076084 MsG0280006777.01.T01:intron 35.0%
AGAAAGCTCAGGAATATTTG+GGG - Chr2:6080097-6080116 None:intergenic 35.0%
AGGAACAAGGAAAAGAAGAA+AGG + Chr2:6077975-6077994 MsG0280006777.01.T01:CDS 35.0%
AGTACTCTAAATGAAGGACT+TGG - Chr2:6078902-6078921 None:intergenic 35.0%
ATGACCACCAAACTCTAAAT+AGG + Chr2:6076986-6077005 MsG0280006777.01.T01:intron 35.0%
ATGGAATTACCATGTTGTCT+AGG - Chr2:6078237-6078256 None:intergenic 35.0%
ATTAAGAGCTACATTGTTGG+AGG - Chr2:6078328-6078347 None:intergenic 35.0%
CAACAATGTAGCTCTTAATG+TGG + Chr2:6078329-6078348 MsG0280006777.01.T01:CDS 35.0%
CAAGAAAGCTCAGGAATATT+TGG - Chr2:6080099-6080118 None:intergenic 35.0%
CACATTAAGAGCTACATTGT+TGG - Chr2:6078331-6078350 None:intergenic 35.0%
CAGCTGAACAAAGCTTAAAT+TGG - Chr2:6080591-6080610 None:intergenic 35.0%
CAGTTTATCTATTCCACATG+TGG + Chr2:6079840-6079859 MsG0280006777.01.T01:intron 35.0%
CCATTGAAGTTGTTCTCAAT+AGG + Chr2:6080684-6080703 MsG0280006777.01.T01:CDS 35.0%
CCTATTGAGAACAACTTCAA+TGG - Chr2:6080687-6080706 None:intergenic 35.0%
CTTCTTCATTCATACCAAGA+TGG - Chr2:6078167-6078186 None:intergenic 35.0%
GAAAACCAGAGAAGACTAAT+TGG + Chr2:6078127-6078146 MsG0280006777.01.T01:CDS 35.0%
GCATAACACTATGATGAACA+TGG - Chr2:6077559-6077578 None:intergenic 35.0%
GGTATGAACTCATCAATAAG+TGG - Chr2:6076325-6076344 None:intergenic 35.0%
GTACTCTAAATGAAGGACTT+GGG - Chr2:6078901-6078920 None:intergenic 35.0%
GTTCATCATAGTGTTATGCA+TGG + Chr2:6077560-6077579 MsG0280006777.01.T01:intron 35.0%
GTTTCGGAGAAACAACAATT+GGG - Chr2:6080526-6080545 None:intergenic 35.0%
TAAAAACCTGGTAATTGTGC+TGG - Chr2:6076385-6076404 None:intergenic 35.0%
TAACACTATGATGAACATGG+TGG - Chr2:6077556-6077575 None:intergenic 35.0%
TACACCAACTATTGCAAAGA+AGG + Chr2:6078105-6078124 MsG0280006777.01.T01:CDS 35.0%
TACTGGAGAGAAAGTAACAT+TGG + Chr2:6078502-6078521 MsG0280006777.01.T01:intron 35.0%
TATGGGATTGTAATGAAGGA+AGG + Chr2:6078578-6078597 MsG0280006777.01.T01:intron 35.0%
TGACCACCAAACTCTAAATA+GGG + Chr2:6076987-6077006 MsG0280006777.01.T01:intron 35.0%
TGACTCTGATTGAAGTTTAG+AGG + Chr2:6078674-6078693 MsG0280006777.01.T01:intron 35.0%
TGGAAGGTCTATGAAAAAAG+TGG - Chr2:6077942-6077961 None:intergenic 35.0%
TGTGATCAAATTCAAACAGC+AGG - Chr2:6080144-6080163 None:intergenic 35.0%
TGTTAATGTTGAGTGGAGTT+AGG + Chr2:6080481-6080500 MsG0280006777.01.T01:intron 35.0%
TGTTTCGGAGAAACAACAAT+TGG - Chr2:6080527-6080546 None:intergenic 35.0%
TTATCATCTTTCGACATCTC+AGG + Chr2:6079740-6079759 MsG0280006777.01.T01:CDS 35.0%
TTGAAGTTTAGAGGCAAGTT+AGG + Chr2:6078683-6078702 MsG0280006777.01.T01:intron 35.0%
TTGCCAATTCAAGCATTCAT+TGG - Chr2:6076962-6076981 None:intergenic 35.0%
TTGTCGTAGACAAAAATGTG+CGG + Chr2:6077725-6077744 MsG0280006777.01.T01:intron 35.0%
TTTCTTTGCTTGCAATTGCA+AGG - Chr2:6076715-6076734 None:intergenic 35.0%
! CTCAAGCTCTGGTAATTAAA+AGG + Chr2:6076008-6076027 MsG0280006777.01.T01:intron 35.0%
! CTTTTTATTGCAAGACTAGG+CGG + Chr2:6079453-6079472 MsG0280006777.01.T01:CDS 35.0%
! TAGAGAGCATAAATGTTCTG+TGG - Chr2:6076664-6076683 None:intergenic 35.0%
! TCCTAGAGTGTGTAATTTTC+AGG + Chr2:6076892-6076911 MsG0280006777.01.T01:intron 35.0%
! TGCAAACAAAGTAAGAGTAC+TGG + Chr2:6078485-6078504 MsG0280006777.01.T01:intron 35.0%
! TGTGTGTGTATTGGTGAATT+GGG + Chr2:6077384-6077403 MsG0280006777.01.T01:intron 35.0%
!! AAAATTACACACTCTAGGAC+TGG - Chr2:6076891-6076910 None:intergenic 35.0%
!! CATACAGTATACTTTTTGGG+TGG - Chr2:6079114-6079133 None:intergenic 35.0%
!! GAAGAAAGTTGATGTCGATT+TGG + Chr2:6080742-6080761 MsG0280006777.01.T01:CDS 35.0%
!! TGTAGAAGTACTAGAGCATT+TGG + Chr2:6076264-6076283 MsG0280006777.01.T01:CDS 35.0%
!!! AGTTCGTGGAATTGGTTTTT+CGG + Chr2:6079782-6079801 MsG0280006777.01.T01:CDS 35.0%
AAAGCTCAGGAATATTTGGG+GGG - Chr2:6080095-6080114 None:intergenic 40.0%
AACATGGCTGTTCAAAGTGA+TGG + Chr2:6078435-6078454 MsG0280006777.01.T01:CDS 40.0%
AAGACTCTGCTGTTAACAAC+TGG + Chr2:6080834-6080853 MsG0280006777.01.T01:CDS 40.0%
AAGCATACACAACAGGAACA+AGG + Chr2:6077962-6077981 MsG0280006777.01.T01:CDS 40.0%
AAGGTTCACACTGATGAAGA+AGG + Chr2:6077994-6078013 MsG0280006777.01.T01:CDS 40.0%
ATATGCATGTTGGTCATAGC+AGG + Chr2:6078385-6078404 MsG0280006777.01.T01:CDS 40.0%
ATTCATCCCTTATCTTTCGC+TGG + Chr2:6080245-6080264 MsG0280006777.01.T01:intron 40.0%
CACTATGTATTCGCTAGGTT+GGG + Chr2:6079542-6079561 MsG0280006777.01.T01:CDS 40.0%
CATCAATGGCCAGGATTTAA+TGG - Chr2:6079002-6079021 None:intergenic 40.0%
CATTAAATCCTGGCCATTGA+TGG + Chr2:6079000-6079019 MsG0280006777.01.T01:intron 40.0%
CGATTAAACCGCATACAGAA+AGG - Chr2:6079483-6079502 None:intergenic 40.0%
GAAAAAGCCCCCATCAAAAT+AGG - Chr2:6077017-6077036 None:intergenic 40.0%
GAAACAAGATGGCACAAAAC+TGG + Chr2:6078021-6078040 MsG0280006777.01.T01:CDS 40.0%
GAAAGCTCAGGAATATTTGG+GGG - Chr2:6080096-6080115 None:intergenic 40.0%
GAACTGTATAACCCTCTACA+AGG - Chr2:6079713-6079732 None:intergenic 40.0%
GACATCCGGTCTAACAATTT+CGG - Chr2:6079303-6079322 None:intergenic 40.0%
GACCACCAAACTCTAAATAG+GGG + Chr2:6076988-6077007 MsG0280006777.01.T01:intron 40.0%
GATATCATGGCAACAGTTGT+GGG + Chr2:6080641-6080660 MsG0280006777.01.T01:CDS 40.0%
GCCTGAAAATTACACACTCT+AGG - Chr2:6076896-6076915 None:intergenic 40.0%
GGTAGATAGACGAAATGACT+TGG - Chr2:6079396-6079415 None:intergenic 40.0%
GTAACATTGGAAGAGCTTCT+TGG + Chr2:6078515-6078534 MsG0280006777.01.T01:intron 40.0%
GTGATGCATCAATACCATCT+TGG + Chr2:6078150-6078169 MsG0280006777.01.T01:CDS 40.0%
TAATTACCAGAGCTTGAGAC+TGG - Chr2:6076006-6076025 None:intergenic 40.0%
TATGCATGTTGGTCATAGCA+GGG + Chr2:6078386-6078405 MsG0280006777.01.T01:CDS 40.0%
TCAATATTATGGCCGCATGA+GGG - Chr2:6075910-6075929 None:intergenic 40.0%
TCACTTTGAACAGCCATGTT+TGG - Chr2:6078435-6078454 None:intergenic 40.0%
TGAGTATAGCAAGAAAGCTC+AGG - Chr2:6080108-6080127 None:intergenic 40.0%
TGCTATGACCAACATGCATA+TGG - Chr2:6078386-6078405 None:intergenic 40.0%
TGTAACACACTTCAACGAGT+TGG - Chr2:6076934-6076953 None:intergenic 40.0%
TGTTCCTGTTGTGTATGCTT+TGG - Chr2:6077962-6077981 None:intergenic 40.0%
TGTTGGGATGTTTACACTCT+TGG + Chr2:6077222-6077241 MsG0280006777.01.T01:intron 40.0%
TTCAATATTATGGCCGCATG+AGG - Chr2:6075911-6075930 None:intergenic 40.0%
! GCTAACTCCTGCAACATTTT+AGG - Chr2:6077902-6077921 None:intergenic 40.0%
! GTGTGTGTGTATTGGTGAAT+TGG + Chr2:6077383-6077402 MsG0280006777.01.T01:intron 40.0%
!! AGAAGTACTAGAGCATTTGG+AGG + Chr2:6076267-6076286 MsG0280006777.01.T01:CDS 40.0%
!! AGTTTGTTGACTTGATCCGT+GGG + Chr2:6080720-6080739 MsG0280006777.01.T01:CDS 40.0%
!! ATCACCCAATTAGTCTTCTC+TGG - Chr2:6078135-6078154 None:intergenic 40.0%
!! CAATACTTGGGTGCCATTAA+TGG + Chr2:6078969-6078988 MsG0280006777.01.T01:intron 40.0%
!! TGGCACTTTGGTGTCATTAA+TGG - Chr2:6079094-6079113 None:intergenic 40.0%
!! TTGATGTCGATTTGGTGCAA+AGG + Chr2:6080750-6080769 MsG0280006777.01.T01:CDS 40.0%
!!! ATACTTTTTGGGTGGCACTT+TGG - Chr2:6079106-6079125 None:intergenic 40.0%
!!! ATAGGGGCATCCTATTTTGA+TGG + Chr2:6077004-6077023 MsG0280006777.01.T01:intron 40.0%
!!! GTTCGTGGAATTGGTTTTTC+GGG + Chr2:6079783-6079802 MsG0280006777.01.T01:CDS 40.0%
!!! TAGGGGCATCCTATTTTGAT+GGG + Chr2:6077005-6077024 MsG0280006777.01.T01:intron 40.0%
!!! TGGGGGGAAGTTTATTTTTG+CGG - Chr2:6080079-6080098 None:intergenic 40.0%
AACTCACACACACAAGTGAC+CGG - Chr2:6079344-6079363 None:intergenic 45.0%
AATGTGTGGCCCTGATCTAA+TGG + Chr2:6079061-6079080 MsG0280006777.01.T01:intron 45.0%
ACATCACACACACACACACT+TGG + Chr2:6079035-6079054 MsG0280006777.01.T01:intron 45.0%
AGACACGATCTTGTTCTGCA+CGG + Chr2:6076496-6076515 MsG0280006777.01.T01:intron 45.0%
AGAGGCAAGTTAGGTGTTTG+TGG + Chr2:6078692-6078711 MsG0280006777.01.T01:intron 45.0%
AGAGTTACTAGCGGAGTGTA+GGG + Chr2:6079626-6079645 MsG0280006777.01.T01:intron 45.0%
AGGCTGCACTGTTATTACCA+TGG - Chr2:6078308-6078327 None:intergenic 45.0%
ATCAACAAAGGAAGTGGCCA+TGG + Chr2:6078288-6078307 MsG0280006777.01.T01:CDS 45.0%
ATCACACACACACACACTTG+GGG + Chr2:6079037-6079056 MsG0280006777.01.T01:intron 45.0%
ATGGCCAGGATTTAATGGCA+CGG - Chr2:6078997-6079016 None:intergenic 45.0%
CAATATTATGGCCGCATGAG+GGG - Chr2:6075909-6075928 None:intergenic 45.0%
CATCACACACACACACACTT+GGG + Chr2:6079036-6079055 MsG0280006777.01.T01:intron 45.0%
CCAACCTAGCGAATACATAG+TGG - Chr2:6079544-6079563 None:intergenic 45.0%
CCACTATGTATTCGCTAGGT+TGG + Chr2:6079541-6079560 MsG0280006777.01.T01:CDS 45.0%
CCTTCCAAAGCATACACAAC+AGG + Chr2:6077955-6077974 MsG0280006777.01.T01:CDS 45.0%
CGACATCAACTTTCTTCCCA+CGG - Chr2:6080739-6080758 None:intergenic 45.0%
CGATATCATGGCAACAGTTG+TGG + Chr2:6080640-6080659 MsG0280006777.01.T01:CDS 45.0%
CGGATCAAGTCAACAAACTC+AGG - Chr2:6080719-6080738 None:intergenic 45.0%
GAGTTCATACCAACGCTTCA+AGG + Chr2:6076334-6076353 MsG0280006777.01.T01:CDS 45.0%
GGGTGGAGTTAATGAATTGC+CGG + Chr2:6076207-6076226 MsG0280006777.01.T01:intron 45.0%
GGTGGAGTTAATGAATTGCC+GGG + Chr2:6076208-6076227 MsG0280006777.01.T01:CDS 45.0%
GTAGAGGGTTATACAGTTCG+TGG + Chr2:6079714-6079733 MsG0280006777.01.T01:CDS 45.0%
GTAGCCACTATGTATTCGCT+AGG + Chr2:6079537-6079556 MsG0280006777.01.T01:CDS 45.0%
GTATAACCCTCTACAAGGTC+AGG - Chr2:6079708-6079727 None:intergenic 45.0%
GTGGAGTTAATGAATTGCCG+GGG + Chr2:6076209-6076228 MsG0280006777.01.T01:CDS 45.0%
GTGGATTCAGTTCGTGGAAT+TGG + Chr2:6079774-6079793 MsG0280006777.01.T01:CDS 45.0%
GTGTGTGTGATGTGTGTGTT+GGG - Chr2:6079028-6079047 None:intergenic 45.0%
GTGTGTGTGTGTGTGTGTAT+TGG + Chr2:6077375-6077394 MsG0280006777.01.T01:intron 45.0%
GTTGCAGGAGTTAGCAAAGA+TGG + Chr2:6077907-6077926 MsG0280006777.01.T01:intron 45.0%
TCGAGCTTTCAAACCACATG+TGG - Chr2:6079856-6079875 None:intergenic 45.0%
TCGTAGGCAAAACGTTGACA+TGG - Chr2:6078768-6078787 None:intergenic 45.0%
TGTGTGTGTGATGTGTGTGT+TGG - Chr2:6079029-6079048 None:intergenic 45.0%
TTGTCGAATCTCTACGACTC+TGG + Chr2:6076049-6076068 MsG0280006777.01.T01:intron 45.0%
! CCTGTTGTGTATGCTTTGGA+AGG - Chr2:6077958-6077977 None:intergenic 45.0%
! GGATGCCCCTATTTAGAGTT+TGG - Chr2:6076996-6077015 None:intergenic 45.0%
! TATGTATTCGCTAGGTTGGG+AGG + Chr2:6079545-6079564 MsG0280006777.01.T01:CDS 45.0%
! TGCCCCTATTTAGAGTTTGG+TGG - Chr2:6076993-6077012 None:intergenic 45.0%
!! GAGTTTGTTGACTTGATCCG+TGG + Chr2:6080719-6080738 MsG0280006777.01.T01:CDS 45.0%
!! TAATGGCACGGTGCCATTAA+TGG - Chr2:6078985-6079004 None:intergenic 45.0%
!!! AGGGGCATCCTATTTTGATG+GGG + Chr2:6077006-6077025 MsG0280006777.01.T01:intron 45.0%
!!! GGGGGGAAGTTTATTTTTGC+GGG - Chr2:6080078-6080097 None:intergenic 45.0%
!!! AAAGTTAATTAATTTTTTTA+AGG + Chr2:6079965-6079984 MsG0280006777.01.T01:intron 5.0%
!!! CTAATTAAATTTTTTTTTTT+TGG + Chr2:6079988-6080007 MsG0280006777.01.T01:intron 5.0%
!!! TAAATTTAAGAATTTTAAAT+TGG - Chr2:6078860-6078879 None:intergenic 5.0%
ACACACCCAGCACAATTACC+AGG + Chr2:6076376-6076395 MsG0280006777.01.T01:CDS 50.0%
ACCATTGAATGCCCCTCATG+CGG + Chr2:6075895-6075914 MsG0280006777.01.T01:CDS 50.0%
ACCTTGCAGATCAGTGGCAT+TGG + Chr2:6079679-6079698 MsG0280006777.01.T01:intron 50.0%
ACTCACACACACAAGTGACC+GGG - Chr2:6079343-6079362 None:intergenic 50.0%
AGAGAGAGAGAGAGAGAGAG+AGG - Chr2:6080281-6080300 None:intergenic 50.0%
ATGGTGACATTGGTGAGGTG+TGG + Chr2:6079571-6079590 MsG0280006777.01.T01:intron 50.0%
CAGACACAGCCTAGACAACA+TGG + Chr2:6078225-6078244 MsG0280006777.01.T01:CDS 50.0%
CATGTTGTCTAGGCTGTGTC+TGG - Chr2:6078227-6078246 None:intergenic 50.0%
CCAACGCTTCAAGGAGAGAA+TGG + Chr2:6076343-6076362 MsG0280006777.01.T01:CDS 50.0%
CCATTCTCTCCTTGAAGCGT+TGG - Chr2:6076346-6076365 None:intergenic 50.0%
CTCTGCTGTTAACAACTGGC+TGG + Chr2:6080838-6080857 MsG0280006777.01.T01:CDS 50.0%
GAGAGAGAGAGAGAGAGAGA+GGG - Chr2:6080282-6080301 None:intergenic 50.0%
GAGAGTTACTAGCGGAGTGT+AGG + Chr2:6079625-6079644 MsG0280006777.01.T01:intron 50.0%
GCGGTGTTCCTTTCTGTATG+CGG + Chr2:6079472-6079491 MsG0280006777.01.T01:CDS 50.0%
GGAAGATGGTGACATTGGTG+AGG + Chr2:6079566-6079585 MsG0280006777.01.T01:intron 50.0%
GGACTAACCTTGCAGATCAG+TGG + Chr2:6079673-6079692 MsG0280006777.01.T01:intron 50.0%
GGCACCTTGCCATTAGATCA+GGG - Chr2:6079073-6079092 None:intergenic 50.0%
GGGTCAAATTTCACTCCAGC+TGG - Chr2:6076238-6076257 None:intergenic 50.0%
GTTAGACCGGATGTCATGAC+CGG + Chr2:6079308-6079327 MsG0280006777.01.T01:intron 50.0%
TCCAGAAGTCCTAGCTCAAC+TGG + Chr2:6079270-6079289 MsG0280006777.01.T01:intron 50.0%
TGGCACCTTGCCATTAGATC+AGG - Chr2:6079074-6079093 None:intergenic 50.0%
TGGGAGGAAGATGGTGACAT+TGG + Chr2:6079561-6079580 MsG0280006777.01.T01:CDS 50.0%
TTAGACCGGATGTCATGACC+GGG + Chr2:6079309-6079328 MsG0280006777.01.T01:intron 50.0%
TTGGGAGGGAGAGTTACTAG+CGG + Chr2:6079617-6079636 MsG0280006777.01.T01:intron 50.0%
TTGGTGAGGTGTGGAAGTAG+AGG + Chr2:6079580-6079599 MsG0280006777.01.T01:intron 50.0%
! GGCATTTTGCCAGTTGAGCT+AGG - Chr2:6079282-6079301 None:intergenic 50.0%
! TGTGTGTTGGGTGCCATCAA+TGG - Chr2:6079016-6079035 None:intergenic 50.0%
!!! GGGGCATCCTATTTTGATGG+GGG + Chr2:6077007-6077026 MsG0280006777.01.T01:intron 50.0%
CACACACTTGGGGCAATGTG+TGG + Chr2:6079047-6079066 MsG0280006777.01.T01:intron 55.0%
CGTAGGTTGTGAGCTTGGGA+GGG + Chr2:6079603-6079622 MsG0280006777.01.T01:intron 55.0%
CTAAGGCCAGTCTCAAGCTC+TGG + Chr2:6075997-6076016 MsG0280006777.01.T01:intron 55.0%
CTCACACACACAAGTGACCG+GGG - Chr2:6079342-6079361 None:intergenic 55.0%
GAGGCGTAGGTTGTGAGCTT+GGG + Chr2:6079599-6079618 MsG0280006777.01.T01:intron 55.0%
GCCAATGCCACTGATCTGCA+AGG - Chr2:6079683-6079702 None:intergenic 55.0%
GCCAGTTGAGCTAGGACTTC+TGG - Chr2:6079274-6079293 None:intergenic 55.0%
GTGGCCCTGATCTAATGGCA+AGG + Chr2:6079066-6079085 MsG0280006777.01.T01:intron 55.0%
TAGACCGGATGTCATGACCG+GGG + Chr2:6079310-6079329 MsG0280006777.01.T01:intron 55.0%
TGGCAGCCTGACCTTGTAGA+GGG + Chr2:6079699-6079718 MsG0280006777.01.T01:CDS 55.0%
TTCACTCCAGCTGGTAACCC+CGG - Chr2:6076229-6076248 None:intergenic 55.0%
TTGGCAGCCTGACCTTGTAG+AGG + Chr2:6079698-6079717 MsG0280006777.01.T01:CDS 55.0%
! AGAGGCGTAGGTTGTGAGCT+TGG + Chr2:6079598-6079617 MsG0280006777.01.T01:intron 55.0%
! AGGTGTGGAAGTAGAGGCGT+AGG + Chr2:6079586-6079605 MsG0280006777.01.T01:intron 55.0%
! GGCACCGTGCCATTAAATCC+TGG + Chr2:6078990-6079009 MsG0280006777.01.T01:intron 55.0%
! TCGCTAGGTTGGGAGGAAGA+TGG + Chr2:6079552-6079571 MsG0280006777.01.T01:CDS 55.0%
!! GACATCTCAGGAGCATCCTG+CGG + Chr2:6079752-6079771 MsG0280006777.01.T01:CDS 55.0%
CCACGAACTGAATCCACCGC+AGG - Chr2:6079771-6079790 None:intergenic 60.0%
CGAACCCCGGTCATGACATC+CGG - Chr2:6079317-6079336 None:intergenic 60.0%
GAATTGCCGGGGTTACCAGC+TGG + Chr2:6076220-6076239 MsG0280006777.01.T01:CDS 60.0%
GCGTAGGTTGTGAGCTTGGG+AGG + Chr2:6079602-6079621 MsG0280006777.01.T01:intron 60.0%
! CCTGCGGTGGATTCAGTTCG+TGG + Chr2:6079768-6079787 MsG0280006777.01.T01:CDS 60.0%
! GTTGGGTGCCATCAATGGCC+AGG - Chr2:6079011-6079030 None:intergenic 60.0%
!! ATCTCAGGAGCATCCTGCGG+TGG + Chr2:6079755-6079774 MsG0280006777.01.T01:CDS 60.0%
!! GCCGCATGAGGGGCATTCAA+TGG - Chr2:6075899-6075918 None:intergenic 60.0%
AGTGACCGGGGTTCGAACCC+CGG - Chr2:6079330-6079349 None:intergenic 65.0%
CATGACCGGGGTTCGAACCC+CGG + Chr2:6079322-6079341 MsG0280006777.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr2 gene 6075811 6080868 6075811 ID=MsG0280006777.01;Name=MsG0280006777.01
Chr2 mRNA 6075811 6080868 6075811 ID=MsG0280006777.01.T01;Parent=MsG0280006777.01;Name=MsG0280006777.01.T01;_AED=0.55;_eAED=0.57;_QI=0|0|0|0.66|1|1|6|0|475
Chr2 exon 6075811 6075942 6075811 ID=MsG0280006777.01.T01:exon:2496;Parent=MsG0280006777.01.T01
Chr2 exon 6076208 6076397 6076208 ID=MsG0280006777.01.T01:exon:2497;Parent=MsG0280006777.01.T01
Chr2 exon 6077914 6078494 6077914 ID=MsG0280006777.01.T01:exon:2498;Parent=MsG0280006777.01.T01
Chr2 exon 6079450 6079582 6079450 ID=MsG0280006777.01.T01:exon:2499;Parent=MsG0280006777.01.T01
Chr2 exon 6079688 6079818 6079688 ID=MsG0280006777.01.T01:exon:2500;Parent=MsG0280006777.01.T01
Chr2 exon 6080608 6080868 6080608 ID=MsG0280006777.01.T01:exon:2501;Parent=MsG0280006777.01.T01
Chr2 CDS 6075811 6075942 6075811 ID=MsG0280006777.01.T01:cds;Parent=MsG0280006777.01.T01
Chr2 CDS 6076208 6076397 6076208 ID=MsG0280006777.01.T01:cds;Parent=MsG0280006777.01.T01
Chr2 CDS 6077914 6078494 6077914 ID=MsG0280006777.01.T01:cds;Parent=MsG0280006777.01.T01
Chr2 CDS 6079450 6079582 6079450 ID=MsG0280006777.01.T01:cds;Parent=MsG0280006777.01.T01
Chr2 CDS 6079688 6079818 6079688 ID=MsG0280006777.01.T01:cds;Parent=MsG0280006777.01.T01
Chr2 CDS 6080608 6080868 6080608 ID=MsG0280006777.01.T01:cds;Parent=MsG0280006777.01.T01
Gene Sequence

>MsG0280006777.01.T01

ATGGCATGGTGCAATGATAAAGATAACAACAACTCTGATGTCACTGATAACATAAAGCTCAATGAAGAAATTGATCAAAATCAAACCATTGAATGCCCCTCATGCGGCCATAATATTGAAGTAAAAAATCAGGGTGGAGTTAATGAATTGCCGGGGTTACCAGCTGGAGTGAAATTTGACCCAAATGATGTAGAAGTACTAGAGCATTTGGAGGCAAAAGTGATGTCTGATGTTCGCAAGATTCATCCACTTATTGATGAGTTCATACCAACGCTTCAAGGAGAGAATGGAATTTGTTATACACACCCAGCACAATTACCAGGAGTTAGCAAAGATGGTCAGATTCGCCACTTTTTTCATAGACCTTCCAAAGCATACACAACAGGAACAAGGAAAAGAAGAAAGGTTCACACTGATGAAGAAGGAATTGAAACAAGATGGCACAAAACTGGGAAAACTAGAGCAATTTTTTCTAATGGTGTTGTGAAGGGATTTAAGAAGATATTGGTACTCTACACCAACTATTGCAAAGAAGGAAAACCAGAGAAGACTAATTGGGTGATGCATCAATACCATCTTGGTATGAATGAAGAAGAAAGAGATGGAGAATTTGTTGCTTCAAAGATCTTCTACCAGACACAGCCTAGACAACATGGTAATTCCATTAACAATGTAAGAGATTCATATGAAAAAATAATCAACAAAGGAAGTGGCCATGGTAATAACAGTGCAGCCTCCAACAATGTAGCTCTTAATGTGGAATGCTACAATGCTTGTTATACAAATTATGACCATATGCATGTTGGTCATAGCAGGGAAAGTACTCCACAACTAATTATACCAAACATGGCTGTTCAAAGTGATGGAACTATTATTCGCTTATCAATGGATCATGCAAACAAAGTACTTTTTATTGCAAGACTAGGCGGTGTTCCTTTCTGTATGCGGTTTAATCGATTATTTGAGTTGGCGGAGAACAAATCTACTTCAGTAGCCACTATGTATTCGCTAGGTTGGGAGGAAGATGGTGACATTGATCAGTGGCATTGGCAGCCTGACCTTGTAGAGGGTTATACAGTTCGTGGCGTTTATCATCTTTCGACATCTCAGGAGCATCCTGCGGTGGATTCAGTTCGTGGAATTGGTTTTTCGGGTGCGGACACTCAGCTGCAATTGTTCTCTCTTTTATTCACTTTGATCGATATCATGGCAACAGTTGTGGGTGAAGCTCTTCTCTCTGCTTCCATTGAAGTTGTTCTCAATAGGATTGCTTCTCCTGAGTTTGTTGACTTGATCCGTGGGAAGAAAGTTGATGTCGATTTGGTGCAAAGGTTGAAGAACACTCTTTATGCTGTTGAAGCTGTGCTTAATGATGCTGAACGCGAACAGATCAAAGACTCTGCTGTTAACAACTGGCTGGCTCGATGA
Protein sequence

>MsG0280006777.01.T01

MAWCNDKDNNNSDVTDNIKLNEEIDQNQTIECPSCGHNIEVKNQGGVNELPGLPAGVKFDPNDVEVLEHLEAKVMSDVRKIHPLIDEFIPTLQGENGICYTHPAQLPGVSKDGQIRHFFHRPSKAYTTGTRKRRKVHTDEEGIETRWHKTGKTRAIFSNGVVKGFKKILVLYTNYCKEGKPEKTNWVMHQYHLGMNEEERDGEFVASKIFYQTQPRQHGNSINNVRDSYEKIINKGSGHGNNSAASNNVALNVECYNACYTNYDHMHVGHSRESTPQLIIPNMAVQSDGTIIRLSMDHANKVLFIARLGGVPFCMRFNRLFELAENKSTSVATMYSLGWEEDGDIDQWHWQPDLVEGYTVRGVYHLSTSQEHPAVDSVRGIGFSGADTQLQLFSLLFTLIDIMATVVGEALLSASIEVVLNRIASPEFVDLIRGKKVDVDLVQRLKNTLYAVEAVLNDAEREQIKDSAVNNWLAR*