Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0280006834.01.T01 | XP_013462554.1 | 96.471 | 85 | 2 | 1 | 1 | 84 | 1 | 85 | 3.90E-51 | 167 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0280006834.01.T01 | P68350 | 55.67 | 97 | 23 | 1 | 8 | 84 | 4 | 100 | 1.51E-31 | 111 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0280006834.01.T01 | A0A072V3I5 | 96.471 | 85 | 2 | 1 | 1 | 84 | 1 | 85 | 1.86e-51 | 167 |
Gene ID | Type | Classification |
---|---|---|
MsG0280006834.01.T01 | TF | C2C2-Dof |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MsG0180000479.01 | MsG0280006834.01 | 0.800459 | 1.427061e-48 | 6.648131e-46 |
MsG0280006834.01 | MsG0280008856.01 | 0.800653 | 1.302755e-48 | 6.099300e-46 |
MsG0280006834.01 | MsG0780037599.01 | 0.812898 | 3.363121e-51 | 2.164361e-48 |
MsG0280006834.01 | MsG0880043262.01 | 0.827831 | 1.258721e-54 | 1.229084e-51 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0280006834.01.T01 | MTR_2g016030 | 96.471 | 85 | 2 | 1 | 1 | 84 | 1 | 85 | 4.72e-55 | 167 |
MsG0280006834.01.T01 | MTR_4g082060 | 62.687 | 67 | 25 | 0 | 18 | 84 | 94 | 160 | 3.57e-27 | 102 |
MsG0280006834.01.T01 | MTR_7g010950 | 62.319 | 69 | 25 | 1 | 17 | 84 | 105 | 173 | 9.22e-27 | 101 |
MsG0280006834.01.T01 | MTR_8g044220 | 68.852 | 61 | 18 | 1 | 25 | 84 | 96 | 156 | 1.02e-26 | 101 |
MsG0280006834.01.T01 | MTR_6g012450 | 66.667 | 66 | 21 | 1 | 19 | 84 | 110 | 174 | 1.25e-26 | 101 |
MsG0280006834.01.T01 | MTR_6g027460 | 73.214 | 56 | 14 | 1 | 30 | 84 | 79 | 134 | 6.40e-25 | 95.5 |
MsG0280006834.01.T01 | MTR_5g041380 | 60.870 | 69 | 25 | 1 | 18 | 84 | 97 | 165 | 7.47e-25 | 95.5 |
MsG0280006834.01.T01 | MTR_7g086780 | 70.690 | 58 | 16 | 1 | 28 | 84 | 80 | 137 | 4.85e-24 | 93.6 |
MsG0280006834.01.T01 | MTR_5g041400 | 69.811 | 53 | 16 | 0 | 32 | 84 | 105 | 157 | 9.03e-24 | 92.4 |
MsG0280006834.01.T01 | MTR_6g027450 | 69.643 | 56 | 16 | 1 | 30 | 84 | 72 | 127 | 1.65e-23 | 91.3 |
MsG0280006834.01.T01 | MTR_5g041420 | 75.556 | 45 | 11 | 0 | 40 | 84 | 132 | 176 | 2.20e-23 | 90.9 |
MsG0280006834.01.T01 | MTR_5g041530 | 61.667 | 60 | 22 | 1 | 25 | 84 | 120 | 178 | 3.93e-23 | 90.9 |
MsG0280006834.01.T01 | MTR_3g435480 | 53.333 | 75 | 26 | 1 | 19 | 84 | 100 | 174 | 7.81e-23 | 90.5 |
MsG0280006834.01.T01 | MTR_4g022370 | 69.048 | 42 | 13 | 0 | 43 | 84 | 79 | 120 | 3.39e-20 | 82.8 |
MsG0280006834.01.T01 | MTR_2g096740 | 51.667 | 60 | 29 | 0 | 25 | 84 | 41 | 100 | 5.55e-20 | 81.3 |
MsG0280006834.01.T01 | MTR_2g096740 | 51.667 | 60 | 29 | 0 | 25 | 84 | 56 | 115 | 7.26e-20 | 81.3 |
MsG0280006834.01.T01 | MTR_4g109980 | 68.293 | 41 | 13 | 0 | 44 | 84 | 38 | 78 | 1.97e-19 | 80.1 |
MsG0280006834.01.T01 | MTR_7g059400 | 69.048 | 42 | 13 | 0 | 43 | 84 | 73 | 114 | 5.25e-19 | 79.3 |
MsG0280006834.01.T01 | MTR_8g079060 | 74.359 | 39 | 10 | 0 | 46 | 84 | 29 | 67 | 5.93e-19 | 77.8 |
MsG0280006834.01.T01 | MTR_8g068210 | 55.172 | 58 | 25 | 1 | 28 | 84 | 13 | 70 | 5.98e-19 | 79.0 |
MsG0280006834.01.T01 | MTR_2g014170 | 69.231 | 39 | 12 | 0 | 46 | 84 | 45 | 83 | 9.37e-19 | 78.2 |
MsG0280006834.01.T01 | MTR_8g015840 | 56.140 | 57 | 19 | 1 | 34 | 84 | 2 | 58 | 9.91e-19 | 77.0 |
MsG0280006834.01.T01 | MTR_7g024670 | 75.676 | 37 | 9 | 0 | 48 | 84 | 79 | 115 | 1.08e-18 | 78.6 |
MsG0280006834.01.T01 | MTR_8g479350 | 75.676 | 37 | 9 | 0 | 48 | 84 | 70 | 106 | 1.30e-18 | 78.2 |
MsG0280006834.01.T01 | MTR_4g088580 | 72.973 | 37 | 10 | 0 | 48 | 84 | 57 | 93 | 1.56e-18 | 78.2 |
MsG0280006834.01.T01 | MTR_2g059540 | 71.795 | 39 | 11 | 0 | 46 | 84 | 31 | 69 | 2.32e-18 | 75.5 |
MsG0280006834.01.T01 | MTR_2g093220 | 55.556 | 54 | 24 | 0 | 31 | 84 | 25 | 78 | 2.33e-18 | 77.0 |
MsG0280006834.01.T01 | MTR_5g031440 | 66.667 | 42 | 14 | 0 | 43 | 84 | 40 | 81 | 2.35e-18 | 77.4 |
MsG0280006834.01.T01 | MTR_4g063780 | 69.048 | 42 | 13 | 0 | 43 | 84 | 72 | 113 | 2.70e-18 | 77.4 |
MsG0280006834.01.T01 | MTR_2g014060 | 47.619 | 63 | 33 | 0 | 22 | 84 | 1 | 63 | 3.19e-18 | 77.0 |
MsG0280006834.01.T01 | MTR_3g077750 | 66.667 | 39 | 13 | 0 | 46 | 84 | 61 | 99 | 6.11e-18 | 76.3 |
MsG0280006834.01.T01 | MTR_3g091820 | 61.905 | 42 | 16 | 0 | 43 | 84 | 40 | 81 | 2.86e-17 | 74.3 |
MsG0280006834.01.T01 | MTR_8g027295 | 69.231 | 39 | 12 | 0 | 46 | 84 | 24 | 62 | 3.00e-17 | 73.9 |
MsG0280006834.01.T01 | MTR_4g461080 | 49.180 | 61 | 31 | 0 | 24 | 84 | 7 | 67 | 3.56e-17 | 73.6 |
MsG0280006834.01.T01 | MTR_2g013370 | 66.667 | 39 | 13 | 0 | 46 | 84 | 46 | 84 | 4.37e-17 | 73.6 |
MsG0280006834.01.T01 | MTR_1g056810 | 64.444 | 45 | 15 | 1 | 41 | 84 | 6 | 50 | 5.20e-17 | 73.6 |
MsG0280006834.01.T01 | MTR_4g089095 | 70.270 | 37 | 11 | 0 | 48 | 84 | 52 | 88 | 6.38e-17 | 73.2 |
MsG0280006834.01.T01 | MTR_1g077600 | 64.286 | 42 | 15 | 0 | 43 | 84 | 40 | 81 | 6.95e-17 | 72.8 |
MsG0280006834.01.T01 | MTR_1g077600 | 64.286 | 42 | 15 | 0 | 43 | 84 | 40 | 81 | 7.59e-17 | 72.8 |
MsG0280006834.01.T01 | MTR_3g090430 | 65.116 | 43 | 15 | 0 | 42 | 84 | 47 | 89 | 1.88e-16 | 72.4 |
MsG0280006834.01.T01 | MTR_4g089095 | 70.270 | 37 | 11 | 0 | 48 | 84 | 18 | 54 | 4.60e-16 | 70.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0280006834.01.T01 | AT1G29160 | 55.670 | 97 | 23 | 1 | 8 | 84 | 4 | 100 | 1.54e-32 | 111 |
MsG0280006834.01.T01 | AT2G34140 | 56.989 | 93 | 24 | 1 | 8 | 84 | 4 | 96 | 1.67e-31 | 108 |
MsG0280006834.01.T01 | AT5G62430 | 56.471 | 85 | 25 | 1 | 12 | 84 | 8 | 92 | 1.19e-27 | 101 |
MsG0280006834.01.T01 | AT3G47500 | 63.077 | 65 | 24 | 0 | 20 | 84 | 84 | 148 | 4.82e-27 | 102 |
MsG0280006834.01.T01 | AT1G26790 | 66.129 | 62 | 21 | 0 | 23 | 84 | 88 | 149 | 1.95e-26 | 99.8 |
MsG0280006834.01.T01 | AT5G39660 | 84.783 | 46 | 7 | 0 | 39 | 84 | 131 | 176 | 1.54e-25 | 98.2 |
MsG0280006834.01.T01 | AT5G39660 | 84.783 | 46 | 7 | 0 | 39 | 84 | 131 | 176 | 1.54e-25 | 98.2 |
MsG0280006834.01.T01 | AT5G39660 | 84.783 | 46 | 7 | 0 | 39 | 84 | 131 | 176 | 1.54e-25 | 98.2 |
MsG0280006834.01.T01 | AT1G69570 | 72.549 | 51 | 14 | 0 | 34 | 84 | 120 | 170 | 3.29e-24 | 94.0 |
MsG0280006834.01.T01 | AT2G28810 | 71.429 | 42 | 12 | 0 | 43 | 84 | 74 | 115 | 2.91e-20 | 82.4 |
MsG0280006834.01.T01 | AT2G28810 | 71.429 | 42 | 12 | 0 | 43 | 84 | 91 | 132 | 2.98e-20 | 82.8 |
MsG0280006834.01.T01 | AT2G37590 | 63.265 | 49 | 18 | 0 | 36 | 84 | 79 | 127 | 5.26e-20 | 82.0 |
MsG0280006834.01.T01 | AT1G07640 | 56.604 | 53 | 23 | 0 | 32 | 84 | 7 | 59 | 1.30e-19 | 80.1 |
MsG0280006834.01.T01 | AT3G55370 | 69.048 | 42 | 13 | 0 | 43 | 84 | 118 | 159 | 2.05e-19 | 80.9 |
MsG0280006834.01.T01 | AT1G07640 | 56.604 | 53 | 23 | 0 | 32 | 84 | 63 | 115 | 2.07e-19 | 80.5 |
MsG0280006834.01.T01 | AT1G07640 | 56.604 | 53 | 23 | 0 | 32 | 84 | 71 | 123 | 2.28e-19 | 80.5 |
MsG0280006834.01.T01 | AT5G60850 | 71.795 | 39 | 11 | 0 | 46 | 84 | 51 | 89 | 2.40e-19 | 80.1 |
MsG0280006834.01.T01 | AT5G02460 | 69.048 | 42 | 13 | 0 | 43 | 84 | 92 | 133 | 3.21e-19 | 80.5 |
MsG0280006834.01.T01 | AT3G55370 | 69.048 | 42 | 13 | 0 | 43 | 84 | 73 | 114 | 5.06e-19 | 79.3 |
MsG0280006834.01.T01 | AT3G50410 | 74.359 | 39 | 10 | 0 | 46 | 84 | 30 | 68 | 5.59e-19 | 78.2 |
MsG0280006834.01.T01 | AT3G55370 | 69.048 | 42 | 13 | 0 | 43 | 84 | 73 | 114 | 5.67e-19 | 79.3 |
MsG0280006834.01.T01 | AT1G28310 | 69.231 | 39 | 12 | 0 | 46 | 84 | 27 | 65 | 1.00e-18 | 78.2 |
MsG0280006834.01.T01 | AT5G66940 | 74.359 | 39 | 10 | 0 | 46 | 84 | 32 | 70 | 1.02e-18 | 77.0 |
MsG0280006834.01.T01 | AT1G28310 | 69.231 | 39 | 12 | 0 | 46 | 84 | 51 | 89 | 1.70e-18 | 77.8 |
MsG0280006834.01.T01 | AT1G51700 | 71.795 | 39 | 11 | 0 | 46 | 84 | 33 | 71 | 2.60e-18 | 75.5 |
MsG0280006834.01.T01 | AT5G65590 | 63.043 | 46 | 17 | 0 | 39 | 84 | 34 | 79 | 2.66e-18 | 77.4 |
MsG0280006834.01.T01 | AT3G21270 | 78.378 | 37 | 8 | 0 | 48 | 84 | 31 | 67 | 2.78e-18 | 75.5 |
MsG0280006834.01.T01 | AT1G47655 | 63.636 | 44 | 16 | 0 | 41 | 84 | 24 | 67 | 2.86e-18 | 75.5 |
MsG0280006834.01.T01 | AT5G62940 | 70.270 | 37 | 11 | 0 | 48 | 84 | 75 | 111 | 3.92e-18 | 77.0 |
MsG0280006834.01.T01 | AT4G38000 | 49.254 | 67 | 27 | 1 | 18 | 84 | 20 | 79 | 7.75e-18 | 75.1 |
MsG0280006834.01.T01 | AT2G28510 | 72.973 | 37 | 10 | 0 | 48 | 84 | 50 | 86 | 8.78e-18 | 75.5 |
MsG0280006834.01.T01 | AT1G64620 | 64.286 | 42 | 15 | 0 | 43 | 84 | 46 | 87 | 9.38e-18 | 75.9 |
MsG0280006834.01.T01 | AT3G52440 | 66.667 | 42 | 13 | 1 | 44 | 84 | 41 | 82 | 1.88e-17 | 74.3 |
MsG0280006834.01.T01 | AT4G24060 | 61.905 | 42 | 16 | 0 | 43 | 84 | 50 | 91 | 2.29e-17 | 74.7 |
MsG0280006834.01.T01 | AT3G45610 | 66.667 | 42 | 14 | 0 | 43 | 84 | 37 | 78 | 2.50e-17 | 73.6 |
MsG0280006834.01.T01 | AT2G46590 | 70.270 | 37 | 11 | 0 | 48 | 84 | 70 | 106 | 2.72e-17 | 74.7 |
MsG0280006834.01.T01 | AT2G46590 | 70.270 | 37 | 11 | 0 | 48 | 84 | 82 | 118 | 3.47e-17 | 74.7 |
MsG0280006834.01.T01 | AT3G61850 | 55.102 | 49 | 22 | 0 | 36 | 84 | 52 | 100 | 3.92e-17 | 73.6 |
MsG0280006834.01.T01 | AT3G61850 | 55.102 | 49 | 22 | 0 | 36 | 84 | 52 | 100 | 3.92e-17 | 73.6 |
MsG0280006834.01.T01 | AT5G60200 | 51.613 | 62 | 27 | 1 | 26 | 84 | 32 | 93 | 3.95e-17 | 73.2 |
MsG0280006834.01.T01 | AT3G61850 | 55.102 | 49 | 22 | 0 | 36 | 84 | 64 | 112 | 4.73e-17 | 73.6 |
MsG0280006834.01.T01 | AT3G61850 | 55.102 | 49 | 22 | 0 | 36 | 84 | 52 | 100 | 5.19e-17 | 73.6 |
MsG0280006834.01.T01 | AT3G61850 | 55.102 | 49 | 22 | 0 | 36 | 84 | 64 | 112 | 6.08e-17 | 73.6 |
MsG0280006834.01.T01 | AT1G21340 | 70.270 | 37 | 11 | 0 | 48 | 84 | 40 | 76 | 5.92e-16 | 70.1 |
MsG0280006834.01.T01 | AT3G52440 | 70.270 | 37 | 11 | 0 | 48 | 84 | 27 | 63 | 1.13e-15 | 69.3 |
MsG0280006834.01.T01 | AT4G00940 | 70.270 | 37 | 11 | 0 | 48 | 84 | 70 | 106 | 4.67e-15 | 68.2 |
MsG0280006834.01.T01 | AT4G00940 | 70.270 | 37 | 11 | 0 | 48 | 84 | 70 | 106 | 4.67e-15 | 68.2 |
MsG0280006834.01.T01 | AT4G00940 | 70.270 | 37 | 11 | 0 | 48 | 84 | 70 | 106 | 4.67e-15 | 68.2 |
MsG0280006834.01.T01 | AT4G21050 | 67.568 | 37 | 12 | 0 | 48 | 84 | 26 | 62 | 9.40e-15 | 66.2 |
MsG0280006834.01.T01 | AT4G21040 | 67.568 | 37 | 12 | 0 | 48 | 84 | 27 | 63 | 2.23e-13 | 63.2 |
MsG0280006834.01.T01 | AT4G21080 | 67.568 | 37 | 12 | 0 | 48 | 84 | 27 | 63 | 1.21e-12 | 61.2 |
Find 19 sgRNAs with CRISPR-Local
Find 17 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATACAAGGGATTAAGCTATT+TGG | 0.296201 | 2:-6872857 | MsG0280006834.01.T01:CDS |
GTAAGAGCTGTCAAAGATAC+TGG | 0.350596 | 2:-6872667 | MsG0280006834.01.T01:CDS |
ATGTCCAAGATGCAAGAGTA+TGG | 0.357770 | 2:-6872744 | MsG0280006834.01.T01:CDS |
GTTTCCATACTCTTGCATCT+TGG | 0.414049 | 2:+6872740 | None:intergenic |
TGTCAAAGATACTGGACGGC+TGG | 0.464609 | 2:-6872659 | MsG0280006834.01.T01:CDS |
TCAAAGATACTGGACGGCTG+GGG | 0.524887 | 2:-6872657 | MsG0280006834.01.T01:CDS |
AAAAGAAAGTGAAGATCAAA+CGG | 0.525439 | 2:-6872795 | MsG0280006834.01.T01:CDS |
GTCAAAGATACTGGACGGCT+GGG | 0.527396 | 2:-6872658 | MsG0280006834.01.T01:CDS |
TTGCATGAGGAATTAAAAGA+AGG | 0.537463 | 2:-6872821 | MsG0280006834.01.T01:CDS |
AGAAAAGGTGAAGAGATACA+AGG | 0.544735 | 2:-6872872 | MsG0280006834.01.T01:CDS |
ATACTCTTGCATCTTGGACA+TGG | 0.546078 | 2:+6872746 | None:intergenic |
CAAAGATACTGGACGGCTGG+GGG | 0.569997 | 2:-6872656 | MsG0280006834.01.T01:CDS |
AAAATGGCTGAAGTGAGAAA+AGG | 0.579551 | 2:-6872887 | MsG0280006834.01.T01:CDS |
GAAAAGGTGAAGAGATACAA+GGG | 0.603099 | 2:-6872871 | MsG0280006834.01.T01:CDS |
CACAACAATAAAATTGCATG+AGG | 0.620119 | 2:-6872834 | MsG0280006834.01.T01:CDS |
GAGCTGTCAAAGATACTGGA+CGG | 0.644495 | 2:-6872663 | MsG0280006834.01.T01:CDS |
TCCAACCGGAACGTTACGGA+GGG | 0.647718 | 2:+6872633 | None:intergenic |
CTCCAACCGGAACGTTACGG+AGG | 0.649811 | 2:+6872632 | None:intergenic |
AGAAAGTGAAGATCAAACGG+TGG | 0.709703 | 2:-6872792 | MsG0280006834.01.T01:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
! | AAAAGAAAGTGAAGATCAAA+CGG | - | Chr2:6872735-6872754 | MsG0280006834.01.T01:CDS | 25.0% |
ATACAAGGGATTAAGCTATT+TGG | - | Chr2:6872673-6872692 | MsG0280006834.01.T01:CDS | 30.0% | |
CACAACAATAAAATTGCATG+AGG | - | Chr2:6872696-6872715 | MsG0280006834.01.T01:CDS | 30.0% | |
TTGCATGAGGAATTAAAAGA+AGG | - | Chr2:6872709-6872728 | MsG0280006834.01.T01:CDS | 30.0% | |
AGAAAAGGTGAAGAGATACA+AGG | - | Chr2:6872658-6872677 | MsG0280006834.01.T01:CDS | 35.0% | |
CAGCTCTTACAAAAATGTCT+TGG | + | Chr2:6872853-6872872 | None:intergenic | 35.0% | |
GAAAAGGTGAAGAGATACAA+GGG | - | Chr2:6872659-6872678 | MsG0280006834.01.T01:CDS | 35.0% | |
AGAAAGTGAAGATCAAACGG+TGG | - | Chr2:6872738-6872757 | MsG0280006834.01.T01:CDS | 40.0% | |
ATACTCTTGCATCTTGGACA+TGG | + | Chr2:6872787-6872806 | None:intergenic | 40.0% | |
ATGTCCAAGATGCAAGAGTA+TGG | - | Chr2:6872786-6872805 | MsG0280006834.01.T01:CDS | 40.0% | |
GTAAGAGCTGTCAAAGATAC+TGG | - | Chr2:6872863-6872882 | MsG0280006834.01.T01:CDS | 40.0% | |
GTTTCCATACTCTTGCATCT+TGG | + | Chr2:6872793-6872812 | None:intergenic | 40.0% | |
GAGCTGTCAAAGATACTGGA+CGG | - | Chr2:6872867-6872886 | MsG0280006834.01.T01:CDS | 45.0% | |
GTCAAAGATACTGGACGGCT+GGG | - | Chr2:6872872-6872891 | MsG0280006834.01.T01:CDS | 50.0% | |
TCAAAGATACTGGACGGCTG+GGG | - | Chr2:6872873-6872892 | MsG0280006834.01.T01:CDS | 50.0% | |
TGTCAAAGATACTGGACGGC+TGG | - | Chr2:6872871-6872890 | MsG0280006834.01.T01:CDS | 50.0% | |
CAAAGATACTGGACGGCTGG+GGG | - | Chr2:6872874-6872893 | MsG0280006834.01.T01:CDS | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr2 | gene | 6872646 | 6872906 | 6872646 | ID=MsG0280006834.01;Name=MsG0280006834.01 |
Chr2 | mRNA | 6872646 | 6872906 | 6872646 | ID=MsG0280006834.01.T01;Parent=MsG0280006834.01;Name=MsG0280006834.01.T01;_AED=0.48;_eAED=0.48;_QI=0|-1|0|1|-1|0|1|0|86 |
Chr2 | exon | 6872646 | 6872906 | 6872646 | ID=MsG0280006834.01.T01:exon:2904;Parent=MsG0280006834.01.T01 |
Chr2 | CDS | 6872646 | 6872906 | 6872646 | ID=MsG0280006834.01.T01:cds;Parent=MsG0280006834.01.T01 |
Gene Sequence |
Protein sequence |