AlfalfaGEDB | MsG0780037599.01

M. sativa cultivar ZhongmuNo.1 / MsG0780037599.01

KEGG: -
GO: -
PFAM: PF04819

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780037599.01.T01	XP_013448169.1	96.013	301	12	0	1	301	1	301	0	555

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780037599.01.T01	A0A072TYC1	96.013	301	12	0	1	301	1	301	0.0	555

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048035.01	MsG0780037599.01	0.816721	4.778725e-52	3.412441e-49
MsG0080048410.01	MsG0780037599.01	0.802557	5.300878e-49	2.604433e-46
MsG0080048848.01	MsG0780037599.01	0.812720	3.678296e-51	2.356204e-48
MsG0080049059.01	MsG0780037599.01	0.806395	8.398250e-50	4.553236e-47
MsG0180000089.01	MsG0780037599.01	0.828684	7.841998e-55	7.850468e-52
MsG0180000172.01	MsG0780037599.01	0.855929	4.533974e-62	1.064043e-58
MsG0180000222.01	MsG0780037599.01	0.802803	4.718153e-49	2.332831e-46
MsG0180000337.01	MsG0780037599.01	0.811601	6.452484e-51	4.011156e-48
MsG0180000479.01	MsG0780037599.01	0.830954	2.195537e-55	2.348544e-52
MsG0180001053.01	MsG0780037599.01	0.807580	4.714818e-50	2.635662e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780037599.01.T01	MTR_7g034135	96.013	301	12	0	1	301	1	301	0.0	555
MsG0780037599.01.T01	MTR_1g112160	30.625	160	109	2	106	265	77	234	7.14e-18	81.6
MsG0780037599.01.T01	MTR_2g021690	25.543	184	126	3	106	289	129	301	3.34e-12	66.2
MsG0780037599.01.T01	MTR_1g112150	25.806	217	143	5	71	277	83	291	1.92e-11	63.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780037599.01.T01	AT3G01360	45.921	331	131	10	1	298	1	316	5.67e-87	263
MsG0780037599.01.T01	AT3G01360	45.921	331	131	10	1	298	1	316	5.67e-87	263
MsG0780037599.01.T01	AT5G19870	27.624	181	125	3	77	253	97	275	3.30e-17	80.1
MsG0780037599.01.T01	AT1G55230	27.326	172	121	2	98	266	123	293	8.25e-16	76.6
MsG0780037599.01.T01	AT1G55240	27.517	149	101	3	77	219	96	243	3.72e-11	63.2

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Find 79 sgRNAs with CRISPR-Local

Find 88 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATTGAGAGAGTGATGTAA+AGG	0.531155	7:+29087197	None:intergenic
AAGGGAGAAAAGGGAAAAGA+AGG	0.421943	7:+29087041	None:intergenic
AAGGTGATCAATGGTGTTAA+TGG	0.392093	7:-29086440	MsG0780037599.01.T01:CDS
AAGTTGAAGGGATAACCCAA+CGG	0.678503	7:+29087111	None:intergenic
AATGTAACGAAATTAGGGCG+TGG	0.574546	7:-29086848	MsG0780037599.01.T01:CDS
AATTATAGTTTGAGATGTAT+AGG	0.333611	7:-29086719	MsG0780037599.01.T01:CDS
AATTGAGAGAGTGATGTAAA+GGG	0.521051	7:+29087198	None:intergenic
AATTTGCATCAAGTTAGTAT+GGG	0.542982	7:-29086743	MsG0780037599.01.T01:CDS
ACACTTCAAACGACGCCGTT+GGG	0.445066	7:-29087126	MsG0780037599.01.T01:CDS
ACGAAATTAGGGCGTGGGAT+TGG	0.494634	7:-29086842	MsG0780037599.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATTGAGAGAGTGATGTAA+AGG	+	Chr7:29086531-29086550	None:intergenic	30.0%
AATTGAGAGAGTGATGTAAA+GGG	+	Chr7:29086530-29086549	None:intergenic	30.0%
AGAAGTTAGGGTTATAAAAG+AGG	+	Chr7:29086557-29086576	None:intergenic	30.0%
ATTAAGAAGAGAAGTGAGAT+TGG	+	Chr7:29086649-29086668	None:intergenic	30.0%
ATTTGCATCAAGTTAGTATG+GGG	-	Chr7:29086983-29087002	MsG0780037599.01.T01:CDS	30.0%
CATCGAATGTAACGAAATTA+GGG	-	Chr7:29086872-29086891	MsG0780037599.01.T01:CDS	30.0%
GAAATTGAAGAGGTTAAAGA+TGG	-	Chr7:29087246-29087265	MsG0780037599.01.T01:CDS	30.0%
TAATTGTCATCTTGCTCTTA+TGG	-	Chr7:29087074-29087093	MsG0780037599.01.T01:CDS	30.0%
TTATGGTTATTGTGCTTGTT+GGG	-	Chr7:29087091-29087110	MsG0780037599.01.T01:CDS	30.0%
AGAGTGAAATGAGAGAAGTT+AGG	+	Chr7:29086570-29086589	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	29086421	29087326	29086421	ID=MsG0780037599.01;Name=MsG0780037599.01
Chr7	mRNA	29086421	29087326	29086421	ID=MsG0780037599.01.T01;Parent=MsG0780037599.01;Name=MsG0780037599.01.T01;_AED=0.22;_eAED=0.22;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|301
Chr7	exon	29086421	29087326	29086421	ID=MsG0780037599.01.T01:exon:13524;Parent=MsG0780037599.01.T01
Chr7	CDS	29086421	29087326	29086421	ID=MsG0780037599.01.T01:cds;Parent=MsG0780037599.01.T01

Gene Sequence

>MsG0780037599.01.T01

ATGGCTCTCATCTCTTACGCCTTAACAGGCACAGGCTTCATCCTAATAGGATCACTCGAATCTCTTCGTGCATCTCAATCCAACAAACTAACCAAAAACCCATCACCCCTTTACATCACTCTCTCAATTTTCACCTCTTTTATAACCCTAACTTCTCTCATTTCACTCTTCAACGCACACACTTCAAACGACGCCGTTGGGTTATCCCTTCAACTTCAAACCCTACCAATCTCACTTCTCTTCTTAATTCACTCTCTTCTCTCCCTTCTTTTCCCTTTTCTCCCTTCACCTTTGCTTACTCTCGTTCTTCTCTTCGGTTTCGCCGAAGAGTTTCTTTTATTTTATCTTCAGAGAAAAGATCCTACTGGAGTTGAGAATCGGTATTATGATTTATTGTTGGTTCCGATTGCGGTTTGTGTTATCGCGACGGTGCTTGAATTGGGTGAATATGCATCGAATGTAACGAAATTAGGGCGTGGGATTGGTCTTTTACTTCAGGGGACATGGTTTGTGCAAATGGGTTTGTCTTTGTTTTATAAGAATTTTGTTACTGAAGGTTGTAATTTGCATCAAGTTAGTATGGGGAATTATAGTTTGAGATGTATAGGGCATGGTGAGTATCATCGAGCGAAGGCTATTGCGACGCTTCAGTTTAATTGTCATCTTGCTCTTATGGTTATTGTGCTTGTTGGGTTTTATTCGTTTGTTTGTGGGAAGGTTGGGAATTCGGCGAGGGAGGAGATGAGTTTGAGGTATAAGCCGCTTGGTGCTGAGATGCAGTCTTTGGAGAATTTGGATGGGAATTTTACTTTGGAATCTGATGATGAAATTGAAGAGGTTAAAGATGGTAATGTGGGGAATTTGAAGGTGATCAATGGTGTTAATGGTAATTCCTATAATCATTGA

Protein sequence

>MsG0780037599.01.T01

MALISYALTGTGFILIGSLESLRASQSNKLTKNPSPLYITLSIFTSFITLTSLISLFNAHTSNDAVGLSLQLQTLPISLLFLIHSLLSLLFPFLPSPLLTLVLLFGFAEEFLLFYLQRKDPTGVENRYYDLLLVPIAVCVIATVLELGEYASNVTKLGRGIGLLLQGTWFVQMGLSLFYKNFVTEGCNLHQVSMGNYSLRCIGHGEYHRAKAIATLQFNCHLALMVIVLVGFYSFVCGKVGNSAREEMSLRYKPLGAEMQSLENLDGNFTLESDDEIEEVKDGNVGNLKVINGVNGNSYNH*