Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280006882.01.T01 | XP_013462553.1 | 97.619 | 168 | 4 | 0 | 1 | 168 | 1 | 168 | 2.19E-116 | 336 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280006882.01.T01 | O49813 | 56.442 | 163 | 69 | 2 | 1 | 162 | 1 | 162 | 3.12E-62 | 192 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280006882.01.T01 | B7FGN2 | 97.619 | 168 | 4 | 0 | 1 | 168 | 1 | 168 | 1.05e-116 | 336 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0280006882.01 | MsG0280009232.01 | 0.821817 | 3.299767e-53 | 2.713538e-50 |
| MsG0280006882.01 | MsG0680034418.01 | 0.810196 | 1.300147e-50 | 7.786953e-48 |
| MsG0280006882.01 | MsG0780040497.01 | 0.803097 | 4.100842e-49 | 2.042700e-46 |
| MsG0280006882.01 | MsG0880046071.01 | 0.814301 | 1.651771e-51 | 1.104280e-48 |
PPI
| Gene1 | Gene2 | Type |
|---|---|---|
| MsG0280006882.01 | MsG0280006833.01 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280006882.01.T01 | MTR_2g016020 | 97.619 | 168 | 4 | 0 | 1 | 168 | 1 | 168 | 2.65e-120 | 336 |
| MsG0280006882.01.T01 | MTR_2g077940 | 35.928 | 167 | 88 | 4 | 8 | 161 | 11 | 171 | 2.90e-27 | 100 |
| MsG0280006882.01.T01 | MTR_2g077960 | 36.025 | 161 | 90 | 4 | 8 | 161 | 11 | 165 | 4.64e-27 | 100 |
| MsG0280006882.01.T01 | MTR_3g087540 | 34.091 | 132 | 79 | 5 | 28 | 155 | 25 | 152 | 7.12e-22 | 86.7 |
| MsG0280006882.01.T01 | MTR_3g073990 | 32.911 | 158 | 102 | 2 | 1 | 157 | 1 | 155 | 1.32e-21 | 86.3 |
| MsG0280006882.01.T01 | MTR_0390s0010 | 35.032 | 157 | 92 | 2 | 8 | 161 | 11 | 160 | 2.94e-19 | 80.1 |
| MsG0280006882.01.T01 | MTR_0786s0020 | 34.395 | 157 | 93 | 2 | 8 | 161 | 11 | 160 | 2.06e-18 | 77.8 |
| MsG0280006882.01.T01 | MTR_2g450190 | 33.758 | 157 | 91 | 3 | 8 | 161 | 11 | 157 | 3.57e-16 | 72.0 |
| MsG0280006882.01.T01 | MTR_0390s0040 | 33.758 | 157 | 91 | 3 | 8 | 161 | 11 | 157 | 3.57e-16 | 72.0 |
| MsG0280006882.01.T01 | MTR_2g077080 | 31.915 | 141 | 87 | 2 | 23 | 161 | 31 | 164 | 4.88e-14 | 66.2 |
| MsG0280006882.01.T01 | MTR_1678s0010 | 28.082 | 146 | 95 | 5 | 28 | 168 | 38 | 178 | 1.40e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280006882.01.T01 | AT1G29140 | 49.412 | 170 | 80 | 4 | 1 | 164 | 1 | 170 | 2.35e-50 | 159 |
| MsG0280006882.01.T01 | AT5G45880 | 53.571 | 140 | 63 | 2 | 27 | 164 | 34 | 173 | 9.33e-50 | 158 |
| MsG0280006882.01.T01 | AT4G18596 | 47.953 | 171 | 82 | 4 | 1 | 164 | 1 | 171 | 1.20e-49 | 158 |
| MsG0280006882.01.T01 | AT4G18596 | 47.953 | 171 | 82 | 4 | 1 | 164 | 47 | 217 | 6.61e-49 | 157 |
| MsG0280006882.01.T01 | AT4G08685 | 39.241 | 158 | 89 | 5 | 8 | 162 | 6 | 159 | 1.95e-31 | 111 |
| MsG0280006882.01.T01 | AT5G10130 | 37.349 | 166 | 94 | 3 | 1 | 162 | 1 | 160 | 6.85e-28 | 102 |
| MsG0280006882.01.T01 | AT1G78040 | 32.143 | 168 | 103 | 5 | 1 | 162 | 1 | 163 | 4.43e-21 | 85.1 |
| MsG0280006882.01.T01 | AT1G78040 | 32.143 | 168 | 103 | 5 | 1 | 162 | 1 | 163 | 4.43e-21 | 85.1 |
| MsG0280006882.01.T01 | AT1G78040 | 32.143 | 168 | 103 | 5 | 1 | 162 | 1 | 163 | 4.43e-21 | 85.1 |
Find 66 sgRNAs with CRISPR-Local
Find 85 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTGCCCACATTAATAATT+AGG | 0.085387 | 2:+7547396 | MsG0280006882.01.T01:three_prime_UTR |
| GATTCATCCCAATTTGTCTT+AGG | 0.203921 | 2:+7547550 | MsG0280006882.01.T01:three_prime_UTR |
| GGATCCTTAACCAATGTCTT+TGG | 0.250333 | 2:-7547590 | None:intergenic |
| TAGCAAACCCTAAGACAAAT+TGG | 0.255500 | 2:-7547558 | None:intergenic |
| TTTGCCCACATTAATAATTA+GGG | 0.297295 | 2:+7547397 | MsG0280006882.01.T01:three_prime_UTR |
| TTGAGAACCTCACCACATTT+AGG | 0.300765 | 2:-7547312 | None:intergenic |
| AAGACAAAATTTATACTAAT+AGG | 0.306921 | 2:-7547611 | None:intergenic |
| TTCTTATGTGGGATTAATAA+TGG | 0.307360 | 2:+7547420 | MsG0280006882.01.T01:three_prime_UTR |
| CGGTCAATCTGGTGATGAAT+TGG | 0.316647 | 2:-7546630 | None:intergenic |
| GCCATTGTTCTTGATATTGT+TGG | 0.323757 | 2:-7546490 | None:intergenic |
| GTGGAATGCAAAGAAGAAAA+TGG | 0.335509 | 2:+7547042 | MsG0280006882.01.T01:CDS |
| GAAAATTAATTTACTTCTAA+AGG | 0.352708 | 2:-7546456 | None:intergenic |
| AGAGGGCTAGCAGCACGAAC+TGG | 0.354642 | 2:-7547264 | None:intergenic |
| CCTGAACGCTTCTTTGTAGA+AGG | 0.366196 | 2:+7546580 | MsG0280006882.01.T01:CDS |
| ATTCATCCCAATTTGTCTTA+GGG | 0.388089 | 2:+7547551 | MsG0280006882.01.T01:three_prime_UTR |
| AAATACAGTGTGGAGATAGA+TGG | 0.398924 | 2:+7547108 | MsG0280006882.01.T01:CDS |
| GTTCGTGCTGCTAGCCCTCT+TGG | 0.402448 | 2:+7547267 | MsG0280006882.01.T01:CDS |
| GATCCTTAACCAATGTCTTT+GGG | 0.404663 | 2:-7547589 | None:intergenic |
| TAGGTAGACGCTCTTTCTTA+AGG | 0.405456 | 2:-7547293 | None:intergenic |
| TGATCCTAGCAGCTTGTTGT+AGG | 0.405713 | 2:-7547212 | None:intergenic |
| TTCAATGAACTCGGTCAATC+TGG | 0.407937 | 2:-7546641 | None:intergenic |
| TAATAATTAGGGTTCTTATG+TGG | 0.408457 | 2:+7547408 | MsG0280006882.01.T01:three_prime_UTR |
| TATCCCAAAGACATTGGTTA+AGG | 0.425381 | 2:+7547586 | MsG0280006882.01.T01:three_prime_UTR |
| TACAAAGAAGCGTTCAGGCT+TGG | 0.439377 | 2:-7546575 | None:intergenic |
| GAACTTGGAATTAATGAAGA+TGG | 0.440677 | 2:+7547336 | MsG0280006882.01.T01:CDS |
| ACCTCTGAGCAATCTTTCCT+TGG | 0.443518 | 2:-7547174 | None:intergenic |
| AATAATTAGGGTTCTTATGT+GGG | 0.452188 | 2:+7547409 | MsG0280006882.01.T01:three_prime_UTR |
| GAAGCAACAACAGATAAATC+AGG | 0.454577 | 2:+7547084 | MsG0280006882.01.T01:CDS |
| TAATGAAGATGGAACTGAAA+AGG | 0.471543 | 2:+7547347 | MsG0280006882.01.T01:CDS |
| AATGAAAGGAATATCCTTTG+AGG | 0.471700 | 2:-7547491 | None:intergenic |
| CCTTCTACAAAGAAGCGTTC+AGG | 0.474728 | 2:-7546580 | None:intergenic |
| GGAATAAGCCGCACCTAAGA+AGG | 0.479861 | 2:-7546554 | None:intergenic |
| AGCAAACCCTAAGACAAATT+GGG | 0.491288 | 2:-7547557 | None:intergenic |
| GAGGGCTAGCAGCACGAACT+GGG | 0.491624 | 2:-7547263 | None:intergenic |
| AGATTGACCGAGTTCATTGA+AGG | 0.500832 | 2:+7546643 | MsG0280006882.01.T01:CDS |
| GGTGAGGTTCTCAAAGAACT+TGG | 0.517638 | 2:+7547321 | MsG0280006882.01.T01:CDS |
| GGTCAATCTGGTGATGAATT+GGG | 0.518245 | 2:-7546629 | None:intergenic |
| ATGAAAGGAATATCCTTTGA+GGG | 0.520779 | 2:-7547490 | None:intergenic |
| AAGAACCCTAATTATTAATG+TGG | 0.527186 | 2:-7547402 | None:intergenic |
| CTTCACATGTTTCATCCTCA+TGG | 0.533134 | 2:-7547134 | None:intergenic |
| TTATTCTTTGCAAGAGTCCA+AGG | 0.534437 | 2:+7547157 | MsG0280006882.01.T01:CDS |
| CTAGATTTCATGACCCTCAA+AGG | 0.544332 | 2:+7547477 | MsG0280006882.01.T01:three_prime_UTR |
| TAATGTGGGCAAAGGACAGA+AGG | 0.550685 | 2:-7547387 | None:intergenic |
| AAAAGCAAAGGGTGAAGACA+AGG | 0.570670 | 2:-7546528 | None:intergenic |
| AATTAGTATCCCAAAGACAT+TGG | 0.576377 | 2:+7547580 | MsG0280006882.01.T01:three_prime_UTR |
| CTAATTATTAATGTGGGCAA+AGG | 0.581679 | 2:-7547395 | None:intergenic |
| AGAACCCTAATTATTAATGT+GGG | 0.587732 | 2:-7547401 | None:intergenic |
| TGAAGGTGCAACGGTGCGTG+TGG | 0.602260 | 2:+7547023 | MsG0280006882.01.T01:intron |
| ATCTAGTATAACTCCTCCAA+AGG | 0.603577 | 2:-7547460 | None:intergenic |
| CTTTCTTAAGGAAACCAAGA+GGG | 0.608256 | 2:-7547281 | None:intergenic |
| ACCAACAATATCAAGAACAA+TGG | 0.613722 | 2:+7546489 | MsG0280006882.01.T01:exon |
| ATCAGTGTCACAAACAACAA+TGG | 0.613848 | 2:+7547231 | MsG0280006882.01.T01:CDS |
| AAGCAAAGGGTGAAGACAAG+GGG | 0.617019 | 2:-7546526 | None:intergenic |
| CTCACCTACAACAAGCTGCT+AGG | 0.622703 | 2:+7547208 | MsG0280006882.01.T01:CDS |
| TGAAGATGGAACTGAAAAGG+AGG | 0.627791 | 2:+7547350 | MsG0280006882.01.T01:CDS |
| GTACGTACCTTCAATGAACT+CGG | 0.638216 | 2:-7546650 | None:intergenic |
| AAAGAGCGTCTACCTAAATG+TGG | 0.642536 | 2:+7547300 | MsG0280006882.01.T01:CDS |
| AGGGCTAGCAGCACGAACTG+GGG | 0.655258 | 2:-7547262 | None:intergenic |
| TATATGTAATGAAGGTGCAA+CGG | 0.656510 | 2:+7547014 | MsG0280006882.01.T01:intron |
| AAAGCAAAGGGTGAAGACAA+GGG | 0.660463 | 2:-7546527 | None:intergenic |
| GCGTCTACCTAAATGTGGTG+AGG | 0.675591 | 2:+7547305 | MsG0280006882.01.T01:CDS |
| TCTTTCTTAAGGAAACCAAG+AGG | 0.685975 | 2:-7547282 | None:intergenic |
| TAAATCAGGAAAATACAGTG+TGG | 0.693438 | 2:+7547098 | MsG0280006882.01.T01:CDS |
| TCCAAGGAAAGATTGCTCAG+AGG | 0.698789 | 2:+7547173 | MsG0280006882.01.T01:CDS |
| AGCAAAGGGTGAAGACAAGG+GGG | 0.721824 | 2:-7546525 | None:intergenic |
| GGAGATAGATGGAGACCATG+AGG | 0.745188 | 2:+7547119 | MsG0280006882.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGACAAAATTTATACTAAT+AGG | - | Chr2:7547614-7547633 | None:intergenic | 15.0% |
| !! | GAAAATTAATTTACTTCTAA+AGG | - | Chr2:7546459-7546478 | None:intergenic | 15.0% |
| !!! | ATAATCTGAATTTTACTTTT+AGG | - | Chr2:7546854-7546873 | None:intergenic | 15.0% |
| !!! | GACATAAATAATAATTTTTG+TGG | + | Chr2:7546988-7547007 | MsG0280006882.01.T01:intron | 15.0% |
| !! | CTAGAGAAAATAAAAATGAA+AGG | - | Chr2:7547508-7547527 | None:intergenic | 20.0% |
| ! | AAGAACCCTAATTATTAATG+TGG | - | Chr2:7547405-7547424 | None:intergenic | 25.0% |
| ! | AATAATTAGGGTTCTTATGT+GGG | + | Chr2:7547409-7547428 | MsG0280006882.01.T01:three_prime_UTR | 25.0% |
| ! | ACACATTTATTACTAAGAAG+CGG | + | Chr2:7546914-7546933 | MsG0280006882.01.T01:intron | 25.0% |
| ! | AGAACCCTAATTATTAATGT+GGG | - | Chr2:7547404-7547423 | None:intergenic | 25.0% |
| ! | TAAGAAGGATAAAAAGCAAA+GGG | - | Chr2:7546542-7546561 | None:intergenic | 25.0% |
| ! | TAATAATTAGGGTTCTTATG+TGG | + | Chr2:7547408-7547427 | MsG0280006882.01.T01:three_prime_UTR | 25.0% |
| ! | TTCTTATGTGGGATTAATAA+TGG | + | Chr2:7547420-7547439 | MsG0280006882.01.T01:three_prime_UTR | 25.0% |
| ! | TTTGCCCACATTAATAATTA+GGG | + | Chr2:7547397-7547416 | MsG0280006882.01.T01:three_prime_UTR | 25.0% |
| !!! | TTTTACTTTTAGGTATTACG+AGG | - | Chr2:7546844-7546863 | None:intergenic | 25.0% |
| AATGAAAGGAATATCCTTTG+AGG | - | Chr2:7547494-7547513 | None:intergenic | 30.0% | |
| AATTAGTATCCCAAAGACAT+TGG | + | Chr2:7547580-7547599 | MsG0280006882.01.T01:three_prime_UTR | 30.0% | |
| ACCAACAATATCAAGAACAA+TGG | + | Chr2:7546489-7546508 | MsG0280006882.01.T01:exon | 30.0% | |
| ATGAAAGGAATATCCTTTGA+GGG | - | Chr2:7547493-7547512 | None:intergenic | 30.0% | |
| ATTCATCCCAATTTGTCTTA+GGG | + | Chr2:7547551-7547570 | MsG0280006882.01.T01:three_prime_UTR | 30.0% | |
| CTAAGAAGGATAAAAAGCAA+AGG | - | Chr2:7546543-7546562 | None:intergenic | 30.0% | |
| CTAATTATTAATGTGGGCAA+AGG | - | Chr2:7547398-7547417 | None:intergenic | 30.0% | |
| CTTTGCCCACATTAATAATT+AGG | + | Chr2:7547396-7547415 | MsG0280006882.01.T01:three_prime_UTR | 30.0% | |
| GAACTTGGAATTAATGAAGA+TGG | + | Chr2:7547336-7547355 | MsG0280006882.01.T01:CDS | 30.0% | |
| TAAATCAGGAAAATACAGTG+TGG | + | Chr2:7547098-7547117 | MsG0280006882.01.T01:CDS | 30.0% | |
| TAATGAAGATGGAACTGAAA+AGG | + | Chr2:7547347-7547366 | MsG0280006882.01.T01:CDS | 30.0% | |
| TTGCACCTTCATTACATATA+TGG | - | Chr2:7547014-7547033 | None:intergenic | 30.0% | |
| ! | AGCTTTTATGTATGTACCTT+TGG | + | Chr2:7547444-7547463 | MsG0280006882.01.T01:three_prime_UTR | 30.0% |
| ! | TATATGTAATGAAGGTGCAA+CGG | + | Chr2:7547014-7547033 | MsG0280006882.01.T01:intron | 30.0% |
| ! | TTTTATGTATGTACCTTTGG+AGG | + | Chr2:7547447-7547466 | MsG0280006882.01.T01:three_prime_UTR | 30.0% |
| !!! | CTTTGCTTTTTATCCTTCTT+AGG | + | Chr2:7546541-7546560 | MsG0280006882.01.T01:CDS | 30.0% |
| AAATACAGTGTGGAGATAGA+TGG | + | Chr2:7547108-7547127 | MsG0280006882.01.T01:CDS | 35.0% | |
| ACACGATACATATTTGACAC+CGG | - | Chr2:7546730-7546749 | None:intergenic | 35.0% | |
| AGCAAACCCTAAGACAAATT+GGG | - | Chr2:7547560-7547579 | None:intergenic | 35.0% | |
| ATATATGTGACAGTGTGTGT+TGG | - | Chr2:7546759-7546778 | None:intergenic | 35.0% | |
| ATCAGTGTCACAAACAACAA+TGG | + | Chr2:7547231-7547250 | MsG0280006882.01.T01:CDS | 35.0% | |
| ATCTAGTATAACTCCTCCAA+AGG | - | Chr2:7547463-7547482 | None:intergenic | 35.0% | |
| CTTTCTTAAGGAAACCAAGA+GGG | - | Chr2:7547284-7547303 | None:intergenic | 35.0% | |
| GAAGCAACAACAGATAAATC+AGG | + | Chr2:7547084-7547103 | MsG0280006882.01.T01:CDS | 35.0% | |
| GATCCTTAACCAATGTCTTT+GGG | - | Chr2:7547592-7547611 | None:intergenic | 35.0% | |
| GATTCATCCCAATTTGTCTT+AGG | + | Chr2:7547550-7547569 | MsG0280006882.01.T01:three_prime_UTR | 35.0% | |
| GCCATTGTTCTTGATATTGT+TGG | - | Chr2:7546493-7546512 | None:intergenic | 35.0% | |
| GTGGAATGCAAAGAAGAAAA+TGG | + | Chr2:7547042-7547061 | MsG0280006882.01.T01:CDS | 35.0% | |
| TAGCAAACCCTAAGACAAAT+TGG | - | Chr2:7547561-7547580 | None:intergenic | 35.0% | |
| TCTTTCTTAAGGAAACCAAG+AGG | - | Chr2:7547285-7547304 | None:intergenic | 35.0% | |
| TGTGGCCATATATGTAATGA+AGG | + | Chr2:7547006-7547025 | MsG0280006882.01.T01:intron | 35.0% | |
| TTATTCTTTGCAAGAGTCCA+AGG | + | Chr2:7547157-7547176 | MsG0280006882.01.T01:CDS | 35.0% | |
| ! | CTTTTTATCCTTCTTAGGTG+CGG | + | Chr2:7546546-7546565 | MsG0280006882.01.T01:CDS | 35.0% |
| ! | TATCCCAAAGACATTGGTTA+AGG | + | Chr2:7547586-7547605 | MsG0280006882.01.T01:three_prime_UTR | 35.0% |
| AAAAGCAAAGGGTGAAGACA+AGG | - | Chr2:7546531-7546550 | None:intergenic | 40.0% | |
| AAAGCAAAGGGTGAAGACAA+GGG | - | Chr2:7546530-7546549 | None:intergenic | 40.0% | |
| AGATTGACCGAGTTCATTGA+AGG | + | Chr2:7546643-7546662 | MsG0280006882.01.T01:CDS | 40.0% | |
| CTAGATTTCATGACCCTCAA+AGG | + | Chr2:7547477-7547496 | MsG0280006882.01.T01:three_prime_UTR | 40.0% | |
| CTTCACATGTTTCATCCTCA+TGG | - | Chr2:7547137-7547156 | None:intergenic | 40.0% | |
| GCAAGACATTCGATATGCTA+AGG | - | Chr2:7546963-7546982 | None:intergenic | 40.0% | |
| GGATCCTTAACCAATGTCTT+TGG | - | Chr2:7547593-7547612 | None:intergenic | 40.0% | |
| GTACGTACCTTCAATGAACT+CGG | - | Chr2:7546653-7546672 | None:intergenic | 40.0% | |
| TAGGTAGACGCTCTTTCTTA+AGG | - | Chr2:7547296-7547315 | None:intergenic | 40.0% | |
| TATACTCCTCGAATTATGCG+TGG | + | Chr2:7546703-7546722 | MsG0280006882.01.T01:intron | 40.0% | |
| TGAAGATGGAACTGAAAAGG+AGG | + | Chr2:7547350-7547369 | MsG0280006882.01.T01:CDS | 40.0% | |
| TTCAATGAACTCGGTCAATC+TGG | - | Chr2:7546644-7546663 | None:intergenic | 40.0% | |
| TTGAGAACCTCACCACATTT+AGG | - | Chr2:7547315-7547334 | None:intergenic | 40.0% | |
| ! | GGTCAATCTGGTGATGAATT+GGG | - | Chr2:7546632-7546651 | None:intergenic | 40.0% |
| !! | AAAGAGCGTCTACCTAAATG+TGG | + | Chr2:7547300-7547319 | MsG0280006882.01.T01:CDS | 40.0% |
| AAGCAAAGGGTGAAGACAAG+GGG | - | Chr2:7546529-7546548 | None:intergenic | 45.0% | |
| ACCTCTGAGCAATCTTTCCT+TGG | - | Chr2:7547177-7547196 | None:intergenic | 45.0% | |
| CCTGAACGCTTCTTTGTAGA+AGG | + | Chr2:7546580-7546599 | MsG0280006882.01.T01:CDS | 45.0% | |
| GGTGAGGTTCTCAAAGAACT+TGG | + | Chr2:7547321-7547340 | MsG0280006882.01.T01:CDS | 45.0% | |
| TAATGTGGGCAAAGGACAGA+AGG | - | Chr2:7547390-7547409 | None:intergenic | 45.0% | |
| TCCAAGGAAAGATTGCTCAG+AGG | + | Chr2:7547173-7547192 | MsG0280006882.01.T01:CDS | 45.0% | |
| ! | CGGTCAATCTGGTGATGAAT+TGG | - | Chr2:7546633-7546652 | None:intergenic | 45.0% |
| !! | CCTTCTACAAAGAAGCGTTC+AGG | - | Chr2:7546583-7546602 | None:intergenic | 45.0% |
| !! | TACAAAGAAGCGTTCAGGCT+TGG | - | Chr2:7546578-7546597 | None:intergenic | 45.0% |
| !! | TGATCCTAGCAGCTTGTTGT+AGG | - | Chr2:7547215-7547234 | None:intergenic | 45.0% |
| AGCAAAGGGTGAAGACAAGG+GGG | - | Chr2:7546528-7546547 | None:intergenic | 50.0% | |
| CTCACCTACAACAAGCTGCT+AGG | + | Chr2:7547208-7547227 | MsG0280006882.01.T01:CDS | 50.0% | |
| GCGTCTACCTAAATGTGGTG+AGG | + | Chr2:7547305-7547324 | MsG0280006882.01.T01:CDS | 50.0% | |
| GGAATAAGCCGCACCTAAGA+AGG | - | Chr2:7546557-7546576 | None:intergenic | 50.0% | |
| GGAGATAGATGGAGACCATG+AGG | + | Chr2:7547119-7547138 | MsG0280006882.01.T01:CDS | 50.0% | |
| TCCTCGAATTATGCGTGGTC+CGG | + | Chr2:7546708-7546727 | MsG0280006882.01.T01:intron | 50.0% | |
| ACCGGACCACGCATAATTCG+AGG | - | Chr2:7546712-7546731 | None:intergenic | 55.0% | |
| ! | AGAGGGCTAGCAGCACGAAC+TGG | - | Chr2:7547267-7547286 | None:intergenic | 60.0% |
| ! | AGGGCTAGCAGCACGAACTG+GGG | - | Chr2:7547265-7547284 | None:intergenic | 60.0% |
| ! | GAGGGCTAGCAGCACGAACT+GGG | - | Chr2:7547266-7547285 | None:intergenic | 60.0% |
| ! | GTTCGTGCTGCTAGCCCTCT+TGG | + | Chr2:7547267-7547286 | MsG0280006882.01.T01:CDS | 60.0% |
| ! | TGAAGGTGCAACGGTGCGTG+TGG | + | Chr2:7547023-7547042 | MsG0280006882.01.T01:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr2 | gene | 7546449 | 7547693 | 7546449 | ID=MsG0280006882.01;Name=MsG0280006882.01 |
| Chr2 | mRNA | 7546449 | 7547693 | 7546449 | ID=MsG0280006882.01.T01;Parent=MsG0280006882.01;Name=MsG0280006882.01.T01;_AED=0.49;_eAED=0.49;_QI=59|1|1|1|1|1|2|316|168 |
| Chr2 | exon | 7546449 | 7546664 | 7546449 | ID=MsG0280006882.01.T01:exon:2207;Parent=MsG0280006882.01.T01 |
| Chr2 | exon | 7547028 | 7547693 | 7547028 | ID=MsG0280006882.01.T01:exon:2208;Parent=MsG0280006882.01.T01 |
| Chr2 | five_prime_UTR | 7546449 | 7546507 | 7546449 | ID=MsG0280006882.01.T01:five_prime_utr;Parent=MsG0280006882.01.T01 |
| Chr2 | CDS | 7546508 | 7546664 | 7546508 | ID=MsG0280006882.01.T01:cds;Parent=MsG0280006882.01.T01 |
| Chr2 | CDS | 7547028 | 7547377 | 7547028 | ID=MsG0280006882.01.T01:cds;Parent=MsG0280006882.01.T01 |
| Chr2 | three_prime_UTR | 7547378 | 7547693 | 7547378 | ID=MsG0280006882.01.T01:three_prime_utr;Parent=MsG0280006882.01.T01 |
| Gene Sequence |
| Protein sequence |
