AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280006977.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280006977.01.T02 MTR_2g018260 94.690 226 11 1 1 226 1 225 5.17e-161 444
MsG0280006977.01.T02 MTR_1g045130 54.237 177 78 2 51 226 31 205 8.24e-66 202
MsG0280006977.01.T02 MTR_6g029230 35.849 159 100 1 41 199 40 196 4.74e-34 122
MsG0280006977.01.T01 MTR_2g018260 94.690 226 11 1 1 226 1 225 5.17e-161 444
MsG0280006977.01.T01 MTR_1g045130 54.237 177 78 2 51 226 31 205 8.24e-66 202
MsG0280006977.01.T01 MTR_6g029230 35.849 159 100 1 41 199 40 196 4.74e-34 122
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280006977.01.T02 AT4G18040 63.750 240 68 2 1 226 1 235 2.45e-107 309
MsG0280006977.01.T02 AT1G29550 64.894 188 66 0 39 226 53 240 1.97e-92 271
MsG0280006977.01.T02 AT1G29590 64.362 188 67 0 39 226 53 240 7.40e-92 270
MsG0280006977.01.T02 AT5G35620 49.457 184 85 5 38 215 12 193 5.68e-57 179
MsG0280006977.01.T02 AT5G35620 49.457 184 85 5 38 215 12 193 5.68e-57 179
MsG0280006977.01.T02 AT5G35620 47.879 165 78 5 31 189 5 167 5.40e-47 153
MsG0280006977.01.T02 AT5G18110 32.487 197 118 2 4 199 9 191 4.78e-30 111
MsG0280006977.01.T01 AT4G18040 63.750 240 68 2 1 226 1 235 2.45e-107 309
MsG0280006977.01.T01 AT1G29550 64.894 188 66 0 39 226 53 240 1.97e-92 271
MsG0280006977.01.T01 AT1G29590 64.362 188 67 0 39 226 53 240 7.40e-92 270
MsG0280006977.01.T01 AT5G35620 49.457 184 85 5 38 215 12 193 5.68e-57 179
MsG0280006977.01.T01 AT5G35620 49.457 184 85 5 38 215 12 193 5.68e-57 179
MsG0280006977.01.T01 AT5G35620 47.879 165 78 5 31 189 5 167 5.40e-47 153
MsG0280006977.01.T01 AT5G18110 32.487 197 118 2 4 199 9 191 4.78e-30 111

Find 16 sgRNAs with CRISPR-Local

Find 170 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGCATTCTATCTATGTTGA+TGG 0.309510 2:-8909890 MsG0280006977.01.T01:three_prime_UTR
CTTGCTGTTGTATCGGATGT+AGG 0.347113 2:-8909942 MsG0280006977.01.T01:intron
CGGATGTAGGGTGTAATGTT+TGG 0.402591 2:-8909929 MsG0280006977.01.T01:intron
TTAATTGCTTCTTGATTGAA+TGG 0.405271 2:-8910018 MsG0280006977.01.T01:three_prime_UTR
TTTCCTTCTTGCTGTTGTAT+CGG 0.433591 2:-8909949 MsG0280006977.01.T01:three_prime_UTR
TAATTGCTTCTTGATTGAAT+GGG 0.476812 2:-8910017 MsG0280006977.01.T01:three_prime_UTR
TGTATTTCTAGATTTGTGTC+CGG 0.499020 2:-8910094 MsG0280006977.01.T01:three_prime_UTR
AACTGTACAGCGATCTTACA+TGG 0.515730 2:-8910199 MsG0280006977.01.T01:three_prime_UTR
TTGCTGTTGTATCGGATGTA+GGG 0.526175 2:-8909941 MsG0280006977.01.T01:intron
TTGAGCTACATGTTGGATGT+TGG 0.546811 2:+8910152 None:intergenic
AATTGCTTCTTGATTGAATG+GGG 0.571465 2:-8910016 MsG0280006977.01.T01:three_prime_UTR
ATCAAGCAGATATTCATACT+AGG 0.580994 2:+8909980 None:intergenic
AGCTACATGTTGGATGTTGG+AGG 0.585156 2:+8910155 None:intergenic
AAATGCATTGAGCTACATGT+TGG 0.594117 2:+8910145 None:intergenic
CATCCGATACAACAGCAAGA+AGG 0.620665 2:+8909946 None:intergenic
GCTACATGTTGGATGTTGGA+GGG 0.661016 2:+8910156 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAATGTTGAAGAATTTTTT+AGG - Chr2:8910414-8910433 MsG0280006977.01.T01:intron 15.0%
!!! AAATTAAGTTTTAAAATTGC+TGG + Chr2:8912160-8912179 None:intergenic 15.0%
!!! AAGATTCATTTTTTATTTCT+TGG - Chr2:8910289-8910308 MsG0280006977.01.T01:intron 15.0%
!!! AATTAAGTTTTAAAATTGCT+GGG + Chr2:8912159-8912178 None:intergenic 15.0%
!!! AGATTCATTTTTTATTTCTT+GGG - Chr2:8910290-8910309 MsG0280006977.01.T01:intron 15.0%
!!! TCATTCATTTTTAGTTAATT+GGG - Chr2:8910756-8910775 MsG0280006977.01.T01:intron 15.0%
!!! TGATTCATTTTTAGTTAATT+GGG - Chr2:8910377-8910396 MsG0280006977.01.T01:CDS 15.0%
!!! TTCATTCATTTTTAGTTAAT+TGG - Chr2:8910755-8910774 MsG0280006977.01.T01:intron 15.0%
!! AAGTTCAAGAGTAAATTATA+TGG + Chr2:8912313-8912332 None:intergenic 20.0%
!! ATAAACTTCTGTTATATTTC+AGG - Chr2:8912443-8912462 MsG0280006977.01.T01:intron 20.0%
!! ATTTCTATAAGCTATATTTG+AGG - Chr2:8910611-8910630 MsG0280006977.01.T01:intron 20.0%
!! CTATCAAAAAATAGCTTATA+TGG + Chr2:8912216-8912235 None:intergenic 20.0%
!! GAATTAGATGGTTATTATAA+TGG - Chr2:8911650-8911669 MsG0280006977.01.T01:CDS 20.0%
!! GATTGAGAATTTAAATTTCA+GGG - Chr2:8912090-8912109 MsG0280006977.01.T01:intron 20.0%
!! TGATTGAGAATTTAAATTTC+AGG - Chr2:8912089-8912108 MsG0280006977.01.T01:intron 20.0%
!! TTCTTGATTATTTGTATCTT+GGG - Chr2:8910953-8910972 MsG0280006977.01.T01:intron 20.0%
!! TTTCTTGATTATTTGTATCT+TGG - Chr2:8910952-8910971 MsG0280006977.01.T01:intron 20.0%
!!! AAAGATTCAGTTTTATGAAT+TGG - Chr2:8910710-8910729 MsG0280006977.01.T01:intron 20.0%
!!! AAGATTCAGTTTTATGAATT+GGG - Chr2:8910711-8910730 MsG0280006977.01.T01:intron 20.0%
!!! AATTCTATCTTTTTCACTTT+TGG - Chr2:8910220-8910239 MsG0280006977.01.T01:exon 20.0%
!!! AATTGGGTATTTTTTACATT+AGG - Chr2:8910350-8910369 MsG0280006977.01.T01:intron 20.0%
!!! ACAATGTTGTAGAATTTTTT+AGG - Chr2:8910793-8910812 MsG0280006977.01.T01:intron 20.0%
!!! ATTGGGTATTTTTTACATTA+GGG - Chr2:8910351-8910370 MsG0280006977.01.T01:intron 20.0%
!!! CTATTGAATTTGTTTTATGA+GGG - Chr2:8911304-8911323 MsG0280006977.01.T01:intron 20.0%
!!! GTGATTCATTTTTAGTTAAT+TGG - Chr2:8910376-8910395 MsG0280006977.01.T01:CDS 20.0%
!!! TATGTTCATTTATTGATTCT+TGG - Chr2:8911058-8911077 MsG0280006977.01.T01:intron 20.0%
!!! TGATGAATTAAAGTACTAAT+TGG - Chr2:8911348-8911367 MsG0280006977.01.T01:intron 20.0%
! AAAGCTTCAAATTTCACTTT+AGG - Chr2:8910438-8910457 MsG0280006977.01.T01:intron 25.0%
! AAATAACTCTTTATCCAAAC+AGG + Chr2:8910847-8910866 None:intergenic 25.0%
! AACCATCTAATTCTTTCTTT+GGG + Chr2:8911643-8911662 None:intergenic 25.0%
! AAGATACATATGGTAATTTC+TGG + Chr2:8912369-8912388 None:intergenic 25.0%
! AAGCTTCAAATTTCACTTTA+GGG - Chr2:8910439-8910458 MsG0280006977.01.T01:intron 25.0%
! ACAAGCATAAAAGATACATA+TGG + Chr2:8912379-8912398 None:intergenic 25.0%
! CTTGATTATAATGAAACCAT+TGG - Chr2:8912495-8912514 MsG0280006977.01.T01:intron 25.0%
! TAACCATCTAATTCTTTCTT+TGG + Chr2:8911644-8911663 None:intergenic 25.0%
! TAATTGCTTCTTGATTGAAT+GGG - Chr2:8912851-8912870 MsG0280006977.01.T01:CDS 25.0%
! TATGCAATCTTATACAAAAG+CGG + Chr2:8910534-8910553 None:intergenic 25.0%
! TGTTCTTCATCAATACTTAT+TGG - Chr2:8911903-8911922 MsG0280006977.01.T01:intron 25.0%
! TTAATTGCTTCTTGATTGAA+TGG - Chr2:8912850-8912869 MsG0280006977.01.T01:CDS 25.0%
!! AAAATGTTGCAGAAATTTTG+AGG - Chr2:8910990-8911009 MsG0280006977.01.T01:intron 25.0%
!! AAGATTCAGTTTTTGTGAAT+TGG - Chr2:8910333-8910352 MsG0280006977.01.T01:intron 25.0%
!! AATTGGGTATTTTTCACATT+AGG - Chr2:8910727-8910746 MsG0280006977.01.T01:intron 25.0%
!! AGATTCAGTTTTTGTGAATT+GGG - Chr2:8910334-8910353 MsG0280006977.01.T01:intron 25.0%
!! ATTGGGTATTTTTCACATTA+GGG - Chr2:8910728-8910747 MsG0280006977.01.T01:intron 25.0%
!! CAATTTAGTCTGAAATATCA+TGG - Chr2:8912055-8912074 MsG0280006977.01.T01:intron 25.0%
!! CTTTTCAACTTTAGATCTTT+GGG - Chr2:8911025-8911044 MsG0280006977.01.T01:intron 25.0%
!! TCTTTTCAACTTTAGATCTT+TGG - Chr2:8911024-8911043 MsG0280006977.01.T01:intron 25.0%
!!! AATTGTTCATTTGTTGTTCT+TGG - Chr2:8910261-8910280 MsG0280006977.01.T01:intron 25.0%
!!! GCTATTGAATTTGTTTTATG+AGG - Chr2:8911303-8911322 MsG0280006977.01.T01:intron 25.0%
!!! TCTTGGGTGTTTTTAATTTT+GGG - Chr2:8910306-8910325 MsG0280006977.01.T01:intron 25.0%
!!! TTCTTGGGTGTTTTTAATTT+TGG - Chr2:8910305-8910324 MsG0280006977.01.T01:intron 25.0%
AACAACTGCTCATCATTATT+GGG + Chr2:8911760-8911779 None:intergenic 30.0%
AACTTCAGAGACTATATTAG+TGG + Chr2:8911939-8911958 None:intergenic 30.0%
AATAAGCTCTTTATCCAAAC+AGG + Chr2:8910466-8910485 None:intergenic 30.0%
AATTGCTTCTTGATTGAATG+GGG - Chr2:8912852-8912871 MsG0280006977.01.T01:CDS 30.0%
ACCATCTAATTCTTTCTTTG+GGG + Chr2:8911642-8911661 None:intergenic 30.0%
AGCATAAGATTGAACCAAAA+TGG - Chr2:8911195-8911214 MsG0280006977.01.T01:intron 30.0%
ATCAAGCAGATATTCATACT+AGG + Chr2:8912891-8912910 None:intergenic 30.0%
CAAAAAGATCTAACTGATTG+AGG + Chr2:8912029-8912048 None:intergenic 30.0%
CAATCTTATGCTTGAAACAA+TGG + Chr2:8911187-8911206 None:intergenic 30.0%
CAGTTCATGAACAATTTGAA+TGG - Chr2:8911687-8911706 MsG0280006977.01.T01:CDS 30.0%
CTACATTCAAAAAGATGATC+CGG + Chr2:8912796-8912815 None:intergenic 30.0%
GAATCTTCTGATTGAACATT+TGG - Chr2:8912407-8912426 MsG0280006977.01.T01:intron 30.0%
GAGGACTTATGAAAATAAGT+TGG - Chr2:8910630-8910649 MsG0280006977.01.T01:intron 30.0%
GCATAAGATTGAACCAAAAT+GGG - Chr2:8911196-8911215 MsG0280006977.01.T01:intron 30.0%
GGGTGGAAAAAATTTCTATT+TGG - Chr2:8911477-8911496 MsG0280006977.01.T01:intron 30.0%
TAACAACTGCTCATCATTAT+TGG + Chr2:8911761-8911780 None:intergenic 30.0%
TACATGGAATATAAAGCCAA+TGG + Chr2:8912514-8912533 None:intergenic 30.0%
TCTGATTGAACATTTGGTAA+TGG - Chr2:8912413-8912432 MsG0280006977.01.T01:intron 30.0%
TTGAATCAATAGGAACTAGA+TGG - Chr2:8911550-8911569 MsG0280006977.01.T01:intron 30.0%
TTGCATTCTATCTATGTTGA+TGG - Chr2:8912978-8912997 MsG0280006977.01.T01:five_prime_UTR 30.0%
! AACTCTTGTAATTTGTCAGA+TGG - Chr2:8912249-8912268 MsG0280006977.01.T01:intron 30.0%
! CTCAATCAGTTAGATCTTTT+TGG - Chr2:8912027-8912046 MsG0280006977.01.T01:intron 30.0%
! CTGATTGAACATTTGGTAAT+GGG - Chr2:8912414-8912433 MsG0280006977.01.T01:intron 30.0%
! TCATGAAAGAAAGTTAGCTT+TGG + Chr2:8912337-8912356 None:intergenic 30.0%
! TGTTGATGTCTTCGATTTTA+GGG + Chr2:8909996-8910015 None:intergenic 30.0%
! TTAGTCTGAAATATCATGGA+GGG - Chr2:8912059-8912078 MsG0280006977.01.T01:intron 30.0%
! TTCTTGGTAACTTTAGTTGT+TGG - Chr2:8911388-8911407 MsG0280006977.01.T01:CDS 30.0%
! TTGAGGATTTTCAATATCAG+AGG + Chr2:8912012-8912031 None:intergenic 30.0%
! TTGTTGATGTCTTCGATTTT+AGG + Chr2:8909997-8910016 None:intergenic 30.0%
! TTTAGTCTGAAATATCATGG+AGG - Chr2:8912058-8912077 MsG0280006977.01.T01:intron 30.0%
! TTTCTACTGTTGAAGAGTTT+TGG - Chr2:8910190-8910209 MsG0280006977.01.T01:three_prime_UTR 30.0%
!! AATCTTTTGAGAGACTGTTT+AGG + Chr2:8910697-8910716 None:intergenic 30.0%
!! GTTCCTACTTTTGAATCAAT+AGG - Chr2:8911540-8911559 MsG0280006977.01.T01:intron 30.0%
!! GTTCCTATTGATTCAAAAGT+AGG + Chr2:8911546-8911565 None:intergenic 30.0%
!! TCGTGTTACTGAAATTTTCA+TGG - Chr2:8911101-8911120 MsG0280006977.01.T01:intron 30.0%
!! TCTCTGAAGTTTATAGACTT+TGG - Chr2:8911948-8911967 MsG0280006977.01.T01:intron 30.0%
!! TGATTGAACATTTGGTAATG+GGG - Chr2:8912415-8912434 MsG0280006977.01.T01:intron 30.0%
!! TGTATTTCTAGATTTGTGTC+CGG - Chr2:8912774-8912793 MsG0280006977.01.T01:CDS 30.0%
!! TTGAATTGTGCTATTTCTGT+AGG - Chr2:8912597-8912616 MsG0280006977.01.T01:intron 30.0%
!!! TTTTAAAATTGCTGGGAGTT+AGG + Chr2:8912152-8912171 None:intergenic 30.0%
AAAGTCCAAGAATTCTCAAG+AGG + Chr2:8910099-8910118 None:intergenic 35.0%
AAATGCATTGAGCTACATGT+TGG + Chr2:8912726-8912745 None:intergenic 35.0%
AAGTCCAAGAATTCTCAAGA+GGG + Chr2:8910098-8910117 None:intergenic 35.0%
ACCCCAAAGAAAGAATTAGA+TGG - Chr2:8911638-8911657 MsG0280006977.01.T01:CDS 35.0%
AGTTGTGAATGTCAGGAATA+GGG - Chr2:8911457-8911476 MsG0280006977.01.T01:CDS 35.0%
ATGAGCAGTTGTTATGTGAA+TGG - Chr2:8911767-8911786 MsG0280006977.01.T01:intron 35.0%
ATTGGAGAGCAATTTGATCA+TGG - Chr2:8911416-8911435 MsG0280006977.01.T01:CDS 35.0%
CTTTAGTTGTTGGCAATGAT+TGG - Chr2:8911398-8911417 MsG0280006977.01.T01:CDS 35.0%
GATCATGGAGATGAAATTTG+TGG - Chr2:8911431-8911450 MsG0280006977.01.T01:CDS 35.0%
GATTTAACATGAAGTGACAC+AGG + Chr2:8912562-8912581 None:intergenic 35.0%
TAGATCCAAAAGTCAAGCTT+GGG - Chr2:8910140-8910159 MsG0280006977.01.T01:three_prime_UTR 35.0%
TGATACTAGCTGGTTGTATA+CGG - Chr2:8911277-8911296 MsG0280006977.01.T01:intron 35.0%
TTCCACCATTAGCACAAATA+GGG + Chr2:8911226-8911245 None:intergenic 35.0%
TTGAGAATTCTTGGACTTTC+TGG - Chr2:8910100-8910119 MsG0280006977.01.T01:three_prime_UTR 35.0%
TTTCCACCATTAGCACAAAT+AGG + Chr2:8911227-8911246 None:intergenic 35.0%
! AACAGTAGAAAGAGTGTAGA+CGG + Chr2:8910181-8910200 None:intergenic 35.0%
! AGCTTCGATCTTTTCACTTT+AGG - Chr2:8910819-8910838 MsG0280006977.01.T01:intron 35.0%
! GCTTCGATCTTTTCACTTTA+GGG - Chr2:8910820-8910839 MsG0280006977.01.T01:intron 35.0%
! GTTATATTTCAGGTGAGCAT+CGG - Chr2:8912453-8912472 MsG0280006977.01.T01:intron 35.0%
! TCTTGTAATTTGTCAGATGG+AGG - Chr2:8912252-8912271 MsG0280006977.01.T01:intron 35.0%
! TGTATCTTTTATGCTTGTGC+TGG - Chr2:8912381-8912400 MsG0280006977.01.T01:intron 35.0%
! TTTGTGCTAATGGTGGAAAA+TGG - Chr2:8911228-8911247 MsG0280006977.01.T01:intron 35.0%
!! ATGGACTGTGCAATTTTCTA+GGG - Chr2:8911247-8911266 MsG0280006977.01.T01:intron 35.0%
!! CATGTGTGTGTTTTTGTTCT+TGG - Chr2:8911372-8911391 MsG0280006977.01.T01:CDS 35.0%
!! CTTTTTCACTTTTGGTCTTC+TGG - Chr2:8910228-8910247 MsG0280006977.01.T01:CDS 35.0%
!! TTTCCTTCTTGCTGTTGTAT+CGG - Chr2:8912919-8912938 MsG0280006977.01.T01:CDS 35.0%
!!! AATGGACTGTGCAATTTTCT+AGG - Chr2:8911246-8911265 MsG0280006977.01.T01:intron 35.0%
AACTGTACAGCGATCTTACA+TGG - Chr2:8912669-8912688 MsG0280006977.01.T01:intron 40.0%
AATTCTCAAGAGGGTGAGAT+TGG + Chr2:8910089-8910108 None:intergenic 40.0%
ACACAGGCAGTTTACTTACA+TGG + Chr2:8912530-8912549 None:intergenic 40.0%
ACACAGGCATAAAAACACAC+AGG + Chr2:8912546-8912565 None:intergenic 40.0%
AGAGAGAGAGCAAGCAAAAA+TGG - Chr2:8909924-8909943 MsG0280006977.01.T01:intron 40.0%
AGATCCAAAAGTCAAGCTTG+GGG - Chr2:8910141-8910160 MsG0280006977.01.T01:three_prime_UTR 40.0%
CAGTTGTGAATGTCAGGAAT+AGG - Chr2:8911456-8911475 MsG0280006977.01.T01:CDS 40.0%
CTAGATCCAAAAGTCAAGCT+TGG - Chr2:8910139-8910158 MsG0280006977.01.T01:three_prime_UTR 40.0%
GAAGACCCTATTTGTGCTAA+TGG - Chr2:8911218-8911237 MsG0280006977.01.T01:intron 40.0%
TGTGATTTGATCGTCGTTGA+TGG + Chr2:8909971-8909990 None:intergenic 40.0%
TTGAGCTACATGTTGGATGT+TGG + Chr2:8912719-8912738 None:intergenic 40.0%
! ACAGTAGAAAGAGTGTAGAC+GGG + Chr2:8910180-8910199 None:intergenic 40.0%
! CAAATAGGGTCTTCCCATTT+TGG + Chr2:8911212-8911231 None:intergenic 40.0%
! TGGACTGTGCAATTTTCTAG+GGG - Chr2:8911248-8911267 MsG0280006977.01.T01:intron 40.0%
! TTGCTGTTGTATCGGATGTA+GGG - Chr2:8912927-8912946 MsG0280006977.01.T01:CDS 40.0%
! TTTCACTTTAGGGACCTGTT+TGG - Chr2:8910449-8910468 MsG0280006977.01.T01:intron 40.0%
!! CTACTGTTGAAGAGTTTTGG+AGG - Chr2:8910193-8910212 MsG0280006977.01.T01:three_prime_UTR 40.0%
!! GACTTTTGGATCTAGCTTGA+GGG + Chr2:8910134-8910153 None:intergenic 40.0%
!! TGACTTTTGGATCTAGCTTG+AGG + Chr2:8910135-8910154 None:intergenic 40.0%
!!! ATCGTCGTTGATGGATTTTG+GGG + Chr2:8909962-8909981 None:intergenic 40.0%
!!! GATCGTCGTTGATGGATTTT+GGG + Chr2:8909963-8909982 None:intergenic 40.0%
!!! TGATCGTCGTTGATGGATTT+TGG + Chr2:8909964-8909983 None:intergenic 40.0%
ACTAGCTGGTTGTATACGGT+AGG - Chr2:8911281-8911300 MsG0280006977.01.T01:intron 45.0%
AGCTACATGTTGGATGTTGG+AGG + Chr2:8912716-8912735 None:intergenic 45.0%
CATCCGATACAACAGCAAGA+AGG + Chr2:8912925-8912944 None:intergenic 45.0%
CATTCACCATCCTAGCAAGT+CGG - Chr2:8911145-8911164 MsG0280006977.01.T01:intron 45.0%
CGGATGTAGGGTGTAATGTT+TGG - Chr2:8912939-8912958 MsG0280006977.01.T01:intron 45.0%
CTCACCCTCTTGAGAATTCT+TGG - Chr2:8910091-8910110 MsG0280006977.01.T01:three_prime_UTR 45.0%
CTCTCTCTCTCTCTCTCTTT+CGG + Chr2:8909900-8909919 None:intergenic 45.0%
GACCCTATTTGTGCTAATGG+TGG - Chr2:8911221-8911240 MsG0280006977.01.T01:intron 45.0%
GCTACATGTTGGATGTTGGA+GGG + Chr2:8912715-8912734 None:intergenic 45.0%
GGGGAAAATCTGATACTAGC+TGG - Chr2:8911267-8911286 MsG0280006977.01.T01:intron 45.0%
TGTGAATGTCAGGAATAGGG+TGG - Chr2:8911460-8911479 MsG0280006977.01.T01:CDS 45.0%
! ACTACCCCAAGCTTGACTTT+TGG + Chr2:8910148-8910167 None:intergenic 45.0%
!! CTTGCTGTTGTATCGGATGT+AGG - Chr2:8912926-8912945 MsG0280006977.01.T01:CDS 45.0%
GTGGAGCAGTTGTGAATGTC+AGG - Chr2:8911450-8911469 MsG0280006977.01.T01:CDS 50.0%
TGCTGCTAATGAAGCTGCTC+AGG - Chr2:8911508-8911527 MsG0280006977.01.T01:intron 50.0%
! AAGAGGGTGAGATTGGTGAC+CGG + Chr2:8910082-8910101 None:intergenic 50.0%
!! AGGTGAGCATCGGAAAACAG+TGG - Chr2:8912463-8912482 MsG0280006977.01.T01:intron 50.0%
!! GAGCATCGGAAAACAGTGGA+AGG - Chr2:8912467-8912486 MsG0280006977.01.T01:intron 50.0%
ATTTCCAAACCCCTCACCGC+CGG - Chr2:8910060-8910079 MsG0280006977.01.T01:three_prime_UTR 55.0%
CATCCTAGCAAGTCGGCTGT+TGG - Chr2:8911152-8911171 MsG0280006977.01.T01:intron 55.0%
GGTGAGGGGTTTGGAAATGG+CGG + Chr2:8910058-8910077 None:intergenic 55.0%
!! CAACAGCCGACTTGCTAGGA+TGG + Chr2:8911154-8911173 None:intergenic 55.0%
GAGGGGTTTGGAAATGGCGG+AGG + Chr2:8910055-8910074 None:intergenic 60.0%
GGCGGTGAGGGGTTTGGAAA+TGG + Chr2:8910061-8910080 None:intergenic 60.0%
! AGATTGGTGACCGGCGGTGA+GGG + Chr2:8910073-8910092 None:intergenic 60.0%
! AGGGTGAGATTGGTGACCGG+CGG + Chr2:8910079-8910098 None:intergenic 60.0%
!! GCTCCAACAGCCGACTTGCT+AGG + Chr2:8911158-8911177 None:intergenic 60.0%
! GAGATTGGTGACCGGCGGTG+AGG + Chr2:8910074-8910093 None:intergenic 65.0%
! GATTGGTGACCGGCGGTGAG+GGG + Chr2:8910072-8910091 None:intergenic 65.0%
GTGACCGGCGGTGAGGGGTT+TGG + Chr2:8910067-8910086 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr2 gene 8909867 8913023 8909867 ID=MsG0280006977.01;Name=MsG0280006977.01
Chr2 mRNA 8909867 8913023 8909867 ID=MsG0280006977.01.T01;Parent=MsG0280006977.01;Name=MsG0280006977.01.T01;_AED=0.46;_eAED=0.46;_QI=76|1|1|1|0.8|0.66|6|334|226
Chr2 exon 8909867 8909926 8909867 ID=MsG0280006977.01.T01:exon:8229;Parent=MsG0280006977.01.T01
Chr2 exon 8909947 8910271 8909947 ID=MsG0280006977.01.T01:exon:8228;Parent=MsG0280006977.01.T01
Chr2 five_prime_UTR 8912948 8913023 8912948 ID=MsG0280006977.01.T01:five_prime_utr;Parent=MsG0280006977.01.T01
Chr2 CDS 8912676 8912947 8912676 ID=MsG0280006977.01.T01:cds;Parent=MsG0280006977.01.T01
Chr2 CDS 8911592 8911757 8911592 ID=MsG0280006977.01.T01:cds;Parent=MsG0280006977.01.T01
Chr2 CDS 8911361 8911486 8911361 ID=MsG0280006977.01.T01:cds;Parent=MsG0280006977.01.T01
Chr2 CDS 8910360 8910425 8910360 ID=MsG0280006977.01.T01:cds;Parent=MsG0280006977.01.T01
Chr2 CDS 8910221 8910271 8910221 ID=MsG0280006977.01.T01:cds;Parent=MsG0280006977.01.T01
Chr2 three_prime_UTR 8909947 8910220 8909947 ID=MsG0280006977.01.T01:three_prime_utr;Parent=MsG0280006977.01.T01
Chr2 three_prime_UTR 8909867 8909926 8909867 ID=MsG0280006977.01.T01:three_prime_utr;Parent=MsG0280006977.01.T01
Chr2 mRNA 8909905 8913023 8909905 ID=MsG0280006977.01.T02;Parent=MsG0280006977.01;Name=MsG0280006977.01.T02;_AED=0.46;_eAED=0.46;_QI=76|1|1|1|1|1|5|316|226
Chr2 exon 8909905 8910271 8909905 ID=MsG0280006977.01.T02:exon:8230;Parent=MsG0280006977.01.T02
Chr2 five_prime_UTR 8912948 8913023 8912948 ID=MsG0280006977.01.T02:five_prime_utr;Parent=MsG0280006977.01.T02
Chr2 CDS 8912676 8912947 8912676 ID=MsG0280006977.01.T02:cds;Parent=MsG0280006977.01.T02
Chr2 CDS 8911592 8911757 8911592 ID=MsG0280006977.01.T02:cds;Parent=MsG0280006977.01.T02
Chr2 CDS 8911361 8911486 8911361 ID=MsG0280006977.01.T02:cds;Parent=MsG0280006977.01.T02
Chr2 CDS 8910360 8910425 8910360 ID=MsG0280006977.01.T02:cds;Parent=MsG0280006977.01.T02
Chr2 CDS 8910221 8910271 8910221 ID=MsG0280006977.01.T02:cds;Parent=MsG0280006977.01.T02
Chr2 three_prime_UTR 8909905 8910220 8909905 ID=MsG0280006977.01.T02:three_prime_utr;Parent=MsG0280006977.01.T02
Gene Sequence

>MsG0280006977.01.T02

ATGGTTGTAGAAGAAACCCCAAAATCCATCAACGACGATCAAATCACAAACCCTAAAATCGAAGACATCAACAACAATCTCGAAGAAAGAGAGATCGACGACGATGATTCCTCCGCCATTTCCAAACCCCTCACCGCCGGTCACCAATCTCACCCTCTTGAGAATTCTTGGACTTTCTGGTTCGATAACCCTCAAGCTAGATCCAAAAGTCAAGCTTGGGGTAGTTCGATTCGACCCGTCTACACTCTTTCTACTGTTGAAGAGTTTTGGAGCATTTACAATAACATTCACCATCCTAGCAAGTCGGCTGTTGGAGCTGATTTCCATTGTTTCAAGCATAAGATTGAACCAAAATGGGAAGACCCTATTTGTGCTAATGGTGGAAAATGGACTGTGCAATTTTCTAGGGGAAAATCTGATACTAGCTGGTTGTATACGTTGTTGGCAATGATTGGAGAGCAATTTGATCATGGAGATGAAATTTGTGGAGCAGTTGTGAATGTCAGGAATAGGGTGGAAAAAATTTCTATTTGGACTAAGAATGCTGCTAATGAAGCTGCTCAGGTGAGCATCGGAAAACAGTGGAAGGAGTTTCTTGATTATAATGAAACCATTGGCTTTATATTCCATGATGATGCAAAGAAGCTTGACAGAGCTGCTAAAAACAAATATGTTGTATGA

>MsG0280006977.01.T01

ATGGTTGTAGAAGAAACCCCAAAATCCATCAACGACGATCAAATCACAAACCCTAAAATCGAAGACATCAACAACAATCTCGAAGAAAGAGAGATCGACGACGATGATTCCTCCGCCATTTCCAAACCCCTCACCGCCGGTCACCAATCTCACCCTCTTGAGAATTCTTGGACTTTCTGGTTCGATAACCCTCAAGCTAGATCCAAAAGTCAAGCTTGGGGTAGTTCGATTCGACCCGTCTACACTCTTTCTACTGTTGAAGAGTTTTGGAGCATTTACAATAACATTCACCATCCTAGCAAGTCGGCTGTTGGAGCTGATTTCCATTGTTTCAAGCATAAGATTGAACCAAAATGGGAAGACCCTATTTGTGCTAATGGTGGAAAATGGACTGTGCAATTTTCTAGGGGAAAATCTGATACTAGCTGGTTGTATACGTTGTTGGCAATGATTGGAGAGCAATTTGATCATGGAGATGAAATTTGTGGAGCAGTTGTGAATGTCAGGAATAGGGTGGAAAAAATTTCTATTTGGACTAAGAATGCTGCTAATGAAGCTGCTCAGGTGAGCATCGGAAAACAGTGGAAGGAGTTTCTTGATTATAATGAAACCATTGGCTTTATATTCCATGATGATGCAAAGAAGCTTGACAGAGCTGCTAAAAACAAATATGTTGTATGA
Protein sequence

>MsG0280006977.01.T02

MVVEETPKSINDDQITNPKIEDINNNLEEREIDDDDSSAISKPLTAGHQSHPLENSWTFWFDNPQARSKSQAWGSSIRPVYTLSTVEEFWSIYNNIHHPSKSAVGADFHCFKHKIEPKWEDPICANGGKWTVQFSRGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRNRVEKISIWTKNAANEAAQVSIGKQWKEFLDYNETIGFIFHDDAKKLDRAAKNKYVV*

>MsG0280006977.01.T01

MVVEETPKSINDDQITNPKIEDINNNLEEREIDDDDSSAISKPLTAGHQSHPLENSWTFWFDNPQARSKSQAWGSSIRPVYTLSTVEEFWSIYNNIHHPSKSAVGADFHCFKHKIEPKWEDPICANGGKWTVQFSRGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRNRVEKISIWTKNAANEAAQVSIGKQWKEFLDYNETIGFIFHDDAKKLDRAAKNKYVV*