AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380015510.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380015510.01.T02 MTR_3g071550 94.706 340 7 1 1 329 1 340 0.0 654
MsG0380015510.01.T02 MTR_3g071560 86.765 340 34 1 1 329 1 340 0.0 557
MsG0380015510.01.T02 MTR_3g071540 81.065 338 55 1 1 329 1 338 0.0 530
MsG0380015510.01.T01 MTR_3g071550 94.706 340 7 1 1 329 1 340 0.0 654
MsG0380015510.01.T01 MTR_3g071560 86.765 340 34 1 1 329 1 340 0.0 557
MsG0380015510.01.T01 MTR_3g071540 81.065 338 55 1 1 329 1 338 0.0 530
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380015510.01.T02 AT2G40290 82.941 340 46 2 2 329 5 344 0.0 536
MsG0380015510.01.T02 AT5G05470 75.882 340 70 2 2 329 5 344 1.97e-174 487
MsG0380015510.01.T02 AT2G40290 92.760 221 16 0 2 222 5 225 1.12e-144 408
MsG0380015510.01.T02 AT2G40290 92.760 221 16 0 2 222 5 225 1.12e-144 408
MsG0380015510.01.T01 AT2G40290 82.941 340 46 2 2 329 5 344 0.0 536
MsG0380015510.01.T01 AT5G05470 75.882 340 70 2 2 329 5 344 1.97e-174 487
MsG0380015510.01.T01 AT2G40290 92.760 221 16 0 2 222 5 225 1.12e-144 408
MsG0380015510.01.T01 AT2G40290 92.760 221 16 0 2 222 5 225 1.12e-144 408

Find 0 sgRNAs with CRISPR-Local

Find 265 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGTTTTTTTCTTATATATTT+TGG - Chr3:71221025-71221044 MsG0380015510.01.T02:intron 10.0%
!! AACCCAAAAAATTAAAATTA+GGG + Chr3:71219997-71220016 None:intergenic 15.0%
!! TAACTACAAATAAAAAATCA+AGG + Chr3:71220168-71220187 None:intergenic 15.0%
!!! AAACCCTAATTTTAATTTTT+TGG - Chr3:71219991-71220010 MsG0380015510.01.T02:intron 15.0%
!!! AACCCTAATTTTAATTTTTT+GGG - Chr3:71219992-71220011 MsG0380015510.01.T02:intron 15.0%
!!! ATTTTTTCAATTAAGATTAC+AGG - Chr3:71220392-71220411 MsG0380015510.01.T02:intron 15.0%
!!! TTGATTTTTTATTTGTAGTT+AGG - Chr3:71220167-71220186 MsG0380015510.01.T02:intron 15.0%
!!! TTTTTTCAATTAAGATTACA+GGG - Chr3:71220393-71220412 MsG0380015510.01.T02:intron 15.0%
!! AAAGTAAATAACATAAAGCA+TGG - Chr3:71221720-71221739 MsG0380015510.01.T02:CDS 20.0%
!! AAATTACTTTCAATAGAAGA+AGG + Chr3:71222788-71222807 None:intergenic 20.0%
!! AATAAAGTTCATGATTTAGA+GGG + Chr3:71220749-71220768 None:intergenic 20.0%
!! ATAAGATACTAGATTGAATT+GGG - Chr3:71222031-71222050 MsG0380015510.01.T02:intron 20.0%
!! CAACAATAGTAATATCTATA+AGG + Chr3:71222686-71222705 None:intergenic 20.0%
!! CAACCCAAAAAATTAAAATT+AGG + Chr3:71219998-71220017 None:intergenic 20.0%
!! CTTATAGATATTACTATTGT+TGG - Chr3:71222684-71222703 MsG0380015510.01.T02:intron 20.0%
!! CTTATTTCCATAAAATATCA+AGG + Chr3:71220673-71220692 None:intergenic 20.0%
!! GTCTTTACATAAATTGAATT+CGG - Chr3:71222444-71222463 MsG0380015510.01.T02:intron 20.0%
!! TGTTAAAAATACTACTTAGT+AGG + Chr3:71222526-71222545 None:intergenic 20.0%
!!! AAAAACCCAATATTTTTTCA+TGG + Chr3:71221950-71221969 None:intergenic 20.0%
!!! AAAACCCAATATTTTTTCAT+GGG + Chr3:71221949-71221968 None:intergenic 20.0%
!!! ACAAACATTGATTTGATAAT+TGG - Chr3:71221239-71221258 MsG0380015510.01.T02:intron 20.0%
!!! ATATGATATTTGAAGTCTTT+TGG + Chr3:71221662-71221681 None:intergenic 20.0%
!!! ATGAAATGTTTTCAATTTGA+TGG - Chr3:71220972-71220991 MsG0380015510.01.T02:intron 20.0%
!!! ATGATCTTTATTTCATCTTT+TGG + Chr3:71220612-71220631 None:intergenic 20.0%
!!! ATTAGGGTTTTTTCTTAATT+AGG + Chr3:71219981-71220000 None:intergenic 20.0%
!!! ATTGAGTTGTTTTAAAAGTT+CGG - Chr3:71222469-71222488 MsG0380015510.01.T02:intron 20.0%
!!! TGATCTTTATTTCATCTTTT+GGG + Chr3:71220611-71220630 None:intergenic 20.0%
!!! TGTTTTAATTGAATTGATTG+TGG - Chr3:71220037-71220056 MsG0380015510.01.T02:intron 20.0%
!!! TTAGGGTTTTTTCTTAATTA+GGG + Chr3:71219980-71219999 None:intergenic 20.0%
!!! TTTTTCAATTAAGATTACAG+GGG - Chr3:71220394-71220413 MsG0380015510.01.T02:intron 20.0%
! AAAAATTTACCTCAAAAGCA+TGG + Chr3:71220117-71220136 None:intergenic 25.0%
! AAAATAAGCTATAAGCTCAT+GGG - Chr3:71220489-71220508 MsG0380015510.01.T02:intron 25.0%
! AAATGATTAAGACCTTAATG+TGG + Chr3:71221004-71221023 None:intergenic 25.0%
! ATAAACCCTATAATACAAAG+CGG - Chr3:71221869-71221888 MsG0380015510.01.T02:CDS 25.0%
! ATAAAGTTCATGATTTAGAG+GGG + Chr3:71220748-71220767 None:intergenic 25.0%
! ATAAATTACAGCACATGTTT+AGG + Chr3:71222567-71222586 None:intergenic 25.0%
! ATATTCAAACTTGTGAAGAA+CGG - Chr3:71219881-71219900 MsG0380015510.01.T02:intron 25.0%
! CAATAAAGTTCATGATTTAG+AGG + Chr3:71220750-71220769 None:intergenic 25.0%
! CATAAGATACTAGATTGAAT+TGG - Chr3:71222030-71222049 MsG0380015510.01.T02:intron 25.0%
! TAAAATAAGCTATAAGCTCA+TGG - Chr3:71220488-71220507 MsG0380015510.01.T02:intron 25.0%
! TGAATCAATAGAAAACACAA+GGG - Chr3:71222877-71222896 MsG0380015510.01.T02:CDS 25.0%
! TGTCATGTTCTATAATCATT+TGG - Chr3:71221086-71221105 MsG0380015510.01.T02:intron 25.0%
! TTACTAAACTGAAAAGCTAA+TGG + Chr3:71222421-71222440 None:intergenic 25.0%
! TTGTAACCTTCCAATTAAAT+TGG + Chr3:71221848-71221867 None:intergenic 25.0%
!! AAGTTGTCCTTGATATTTTA+TGG - Chr3:71220663-71220682 MsG0380015510.01.T02:intron 25.0%
!! ATTCATTTGAGTTTATCTAC+CGG + Chr3:71220712-71220731 None:intergenic 25.0%
!! ATTTTCATTCAAAGTCCTTT+AGG - Chr3:71222759-71222778 MsG0380015510.01.T02:CDS 25.0%
!! TATTTTGTTACAATCTTGAC+AGG - Chr3:71222811-71222830 MsG0380015510.01.T02:CDS 25.0%
!!! CAACAAGTTTAATTTTCACA+GGG + Chr3:71221161-71221180 None:intergenic 25.0%
!!! TTTAAAAGTTCGGTTTTGAA+AGG - Chr3:71222479-71222498 MsG0380015510.01.T02:intron 25.0%
AACCAAATAGATTTAGAGAG+AGG + Chr3:71219501-71219520 None:intergenic 30.0%
AAGATTACAGGGGTAAAATT+GGG - Chr3:71220404-71220423 MsG0380015510.01.T02:intron 30.0%
AAGCTGAAAACAGTTTATAC+CGG - Chr3:71220690-71220709 MsG0380015510.01.T02:intron 30.0%
ACAATACACGATTCAAAAAG+TGG + Chr3:71221592-71221611 None:intergenic 30.0%
ACCCACATAACAAAAAGAAA+AGG + Chr3:71221064-71221083 None:intergenic 30.0%
ACTTTGATGTTATTGGATTG+TGG - Chr3:71221311-71221330 MsG0380015510.01.T02:intron 30.0%
AGAAGATAAAGGATATAGAG+AGG + Chr3:71222948-71222967 None:intergenic 30.0%
AGCATGAATTGAAGTATGAA+TGG + Chr3:71222617-71222636 None:intergenic 30.0%
ATCGACCCATGAAAAAATAT+TGG - Chr3:71221941-71221960 MsG0380015510.01.T02:intron 30.0%
ATTCAGAAAGAAAACTGAAC+CGG - Chr3:71221444-71221463 MsG0380015510.01.T02:intron 30.0%
CACACGTAAATAGAAGATAA+AGG + Chr3:71222959-71222978 None:intergenic 30.0%
CCCACATAACAAAAAGAAAA+GGG + Chr3:71221063-71221082 None:intergenic 30.0%
CTCACTATCCATATAATCAA+CGG + Chr3:71222318-71222337 None:intergenic 30.0%
CTGAATCAATAGAAAACACA+AGG - Chr3:71222876-71222895 MsG0380015510.01.T02:CDS 30.0%
CTGATTGAATTTGTAGTGTT+TGG - Chr3:71220299-71220318 MsG0380015510.01.T02:intron 30.0%
CTTTGATGTTATTGGATTGT+GGG - Chr3:71221312-71221331 MsG0380015510.01.T02:intron 30.0%
GGAAGTAGTTCCAATTTAAT+TGG - Chr3:71221835-71221854 MsG0380015510.01.T02:CDS 30.0%
GTAGTGTTTGGTAAAATTAG+TGG - Chr3:71220311-71220330 MsG0380015510.01.T02:intron 30.0%
GTAGTTCCAATTTAATTGGA+AGG - Chr3:71221839-71221858 MsG0380015510.01.T02:CDS 30.0%
GTTGACTACCTTAAAAAACT+AGG - Chr3:71221406-71221425 MsG0380015510.01.T02:intron 30.0%
TAAGATTACAGGGGTAAAAT+TGG - Chr3:71220403-71220422 MsG0380015510.01.T02:intron 30.0%
TAAGGTAGTCAACAATAGAA+TGG + Chr3:71221399-71221418 None:intergenic 30.0%
TACCTTAAAAAACTAGGCAT+GGG - Chr3:71221412-71221431 MsG0380015510.01.T02:intron 30.0%
TCATGAACTTTATTGTATGC+AGG - Chr3:71220755-71220774 MsG0380015510.01.T02:intron 30.0%
TCCTCAACCAATGAAAATTA+GGG - Chr3:71220938-71220957 MsG0380015510.01.T02:intron 30.0%
TCGACCCATGAAAAAATATT+GGG - Chr3:71221942-71221961 MsG0380015510.01.T02:intron 30.0%
TGCTACTACTTTGATGTTAT+TGG - Chr3:71221304-71221323 MsG0380015510.01.T02:intron 30.0%
TTCCTCTCTCTAAATCTATT+TGG - Chr3:71219496-71219515 MsG0380015510.01.T02:CDS 30.0%
TTGACAGTAAGTTATGATTC+AGG - Chr3:71223046-71223065 MsG0380015510.01.T02:CDS 30.0%
TTTGATGTTATTGGATTGTG+GGG - Chr3:71221313-71221332 MsG0380015510.01.T02:intron 30.0%
! CAACAATAGAATGGCTTTTA+TGG + Chr3:71221390-71221409 None:intergenic 30.0%
! TATTCGGTTTTGCATAACTT+CGG + Chr3:71221477-71221496 None:intergenic 30.0%
! TTTTAGACTAGACACTTTGA+TGG - Chr3:71220140-71220159 MsG0380015510.01.T02:intron 30.0%
!! ACCCTTTTCTTTTTGTTATG+TGG - Chr3:71221059-71221078 MsG0380015510.01.T02:intron 30.0%
!! CCCTTTTCTTTTTGTTATGT+GGG - Chr3:71221060-71221079 MsG0380015510.01.T02:intron 30.0%
!! GCAACAAGTTTAATTTTCAC+AGG + Chr3:71221162-71221181 None:intergenic 30.0%
!! GGTATAAGCTATTTCTATAG+CGG - Chr3:71220219-71220238 MsG0380015510.01.T02:intron 30.0%
!!! AAATATTGGGTTTTTTCTGC+TGG - Chr3:71221955-71221974 MsG0380015510.01.T02:intron 30.0%
!!! AATATTGGGTTTTTTCTGCT+GGG - Chr3:71221956-71221975 MsG0380015510.01.T02:intron 30.0%
!!! CTATAATCATTTGGTTTTGC+AGG - Chr3:71221095-71221114 MsG0380015510.01.T02:intron 30.0%
!!! TAACCAGAAACGGTTTTATT+CGG + Chr3:71221493-71221512 None:intergenic 30.0%
AAACCGAATAAAACCGTTTC+TGG - Chr3:71221487-71221506 MsG0380015510.01.T02:intron 35.0%
AAAGTTTGGATGAAACTGGA+CGG + Chr3:71222216-71222235 None:intergenic 35.0%
AAGGAAAGTTTGGATGAAAC+TGG + Chr3:71222220-71222239 None:intergenic 35.0%
AAGTATGAATGGCTTAAAGC+AGG + Chr3:71222606-71222625 None:intergenic 35.0%
AATAGAAGAAGGTTGCCTAA+AGG + Chr3:71222777-71222796 None:intergenic 35.0%
AATTGATTGTGGCTTTCTGT+AGG - Chr3:71220048-71220067 MsG0380015510.01.T02:intron 35.0%
AGCTTATACCTAAGTGCTTA+TGG + Chr3:71220209-71220228 None:intergenic 35.0%
ATATCGATCTCAGTAAACGT+AGG - Chr3:71219845-71219864 MsG0380015510.01.T02:CDS 35.0%
ATCTTTATGTGCACATTGGA+TGG - Chr3:71220071-71220090 MsG0380015510.01.T02:intron 35.0%
ATGATTTAGAGGGGTCTATT+TGG + Chr3:71220739-71220758 None:intergenic 35.0%
CAATTCATGCTGATGTCATA+TGG - Chr3:71222626-71222645 MsG0380015510.01.T02:intron 35.0%
CTACCTTAAAAAACTAGGCA+TGG - Chr3:71221411-71221430 MsG0380015510.01.T02:intron 35.0%
CTCCTCAACCAATGAAAATT+AGG - Chr3:71220937-71220956 MsG0380015510.01.T02:intron 35.0%
CTTATGGCGTCTATTCAAAT+AGG + Chr3:71220193-71220212 None:intergenic 35.0%
GATAAAGGATATAGAGAGGA+TGG + Chr3:71222944-71222963 None:intergenic 35.0%
GTGAACCGCTTTGTATTATA+GGG + Chr3:71221877-71221896 None:intergenic 35.0%
TACAATCAGTTCTTCAACCT+TGG + Chr3:71222272-71222291 None:intergenic 35.0%
TACATGCGACATTCCAAATT+CGG + Chr3:71219607-71219626 None:intergenic 35.0%
TAGGATCTTTATGTGCACAT+TGG - Chr3:71220067-71220086 MsG0380015510.01.T02:intron 35.0%
TATCGATCTCAGTAAACGTA+GGG - Chr3:71219846-71219865 MsG0380015510.01.T02:CDS 35.0%
TCAACCAATGAAAATTAGGG+CGG - Chr3:71220941-71220960 MsG0380015510.01.T02:intron 35.0%
TGATGGAGTTATCCACATTA+AGG - Chr3:71220989-71221008 MsG0380015510.01.T02:intron 35.0%
TTCACCCTGTAATATCTGAT+GGG - Chr3:71221892-71221911 MsG0380015510.01.T02:CDS 35.0%
! ACTGAAGCAAATTGGTTCTT+TGG - Chr3:71221519-71221538 MsG0380015510.01.T02:CDS 35.0%
! AGAACCAATTTGCTTCAGTT+CGG + Chr3:71221518-71221537 None:intergenic 35.0%
! AGAGTGAACCGTTGATTATA+TGG - Chr3:71222307-71222326 MsG0380015510.01.T02:intron 35.0%
! AGCAAATTGGTTCTTTGGTT+CGG - Chr3:71221524-71221543 MsG0380015510.01.T02:CDS 35.0%
! ATATCCGCCCTAATTTTCAT+TGG + Chr3:71220948-71220967 None:intergenic 35.0%
! CTTCGTGTTGATAAGGAAAA+GGG - Chr3:71219820-71219839 MsG0380015510.01.T02:CDS 35.0%
! TCTTCGTGTTGATAAGGAAA+AGG - Chr3:71219819-71219838 MsG0380015510.01.T02:CDS 35.0%
!! ATGGATAGTGAGTTGATTCT+TGG - Chr3:71222326-71222345 MsG0380015510.01.T02:intron 35.0%
!! CAGTTTATTGACTTGTCTAG+AGG + Chr3:71222662-71222681 None:intergenic 35.0%
!! TTTCATCTTTTGGGTCTGTT+TGG + Chr3:71220602-71220621 None:intergenic 35.0%
!!! AAGTTCGGTTTTGAAAGGAT+AGG - Chr3:71222484-71222503 MsG0380015510.01.T02:intron 35.0%
!!! TAATCATTTGGTTTTGCAGG+AGG - Chr3:71221098-71221117 MsG0380015510.01.T02:intron 35.0%
AACATCTACGATATCAGCCA+AGG - Chr3:71222252-71222271 MsG0380015510.01.T02:intron 40.0%
AAGTGAAACGTGAATGTCAC+AGG - Chr3:71222004-71222023 MsG0380015510.01.T02:intron 40.0%
AATAGACGCCATAAGCACTT+AGG - Chr3:71220198-71220217 MsG0380015510.01.T02:intron 40.0%
AGAGGAAGAAGATACTGGAA+TGG - Chr3:71223157-71223176 MsG0380015510.01.T02:five_prime_UTR 40.0%
AGTAGTAGCAAATTCACCCA+TGG + Chr3:71221294-71221313 None:intergenic 40.0%
AGTGAAGAGGAAGAAGATAC+TGG - Chr3:71223152-71223171 MsG0380015510.01.T02:five_prime_UTR 40.0%
ATTGGGATACATGAATACGC+CGG - Chr3:71222048-71222067 MsG0380015510.01.T02:intron 40.0%
CAAGGGTAAACTTTCTGTGA+AGG - Chr3:71222894-71222913 MsG0380015510.01.T02:CDS 40.0%
CACATCAAACCTCACAACAA+TGG - Chr3:71219579-71219598 MsG0380015510.01.T02:CDS 40.0%
CTCGAATACAACAACATCGA+GGG - Chr3:71219709-71219728 MsG0380015510.01.T02:intron 40.0%
GAAGAGAATCCAAAAGCAGA+TGG + Chr3:71223002-71223021 None:intergenic 40.0%
GAGGAAGAAGATACTGGAAT+GGG - Chr3:71223158-71223177 MsG0380015510.01.T02:five_prime_UTR 40.0%
GATAAAGAGCAGAGAAACAG+AGG - Chr3:71221752-71221771 MsG0380015510.01.T02:CDS 40.0%
GCAAGCAAACAGATTGAGTT+TGG - Chr3:71222373-71222392 MsG0380015510.01.T02:intron 40.0%
GCAGGCATTCAAAATTGTTG+TGG - Chr3:71220773-71220792 MsG0380015510.01.T02:intron 40.0%
GGTGAACCGCTTTGTATTAT+AGG + Chr3:71221878-71221897 None:intergenic 40.0%
GTGACCCATCAGATATTACA+GGG + Chr3:71221899-71221918 None:intergenic 40.0%
GTTCACCCTGTAATATCTGA+TGG - Chr3:71221891-71221910 MsG0380015510.01.T02:CDS 40.0%
GTTGGATAGCGTGACATAAA+TGG - Chr3:71222702-71222721 MsG0380015510.01.T02:intron 40.0%
TAGTGTTAGCAGTCTCATCA+AGG - Chr3:71219771-71219790 MsG0380015510.01.T02:intron 40.0%
TATCCCGAACTGAAGCAAAT+TGG - Chr3:71221511-71221530 MsG0380015510.01.T02:CDS 40.0%
TCTCGAATACAACAACATCG+AGG - Chr3:71219708-71219727 MsG0380015510.01.T02:intron 40.0%
TGATTCAGTGCAACTAGCAA+TGG + Chr3:71222864-71222883 None:intergenic 40.0%
TGCTGTATCTGAAGAACTGA+AGG - Chr3:71220881-71220900 MsG0380015510.01.T02:intron 40.0%
TGGCCATATTTGCGATACAA+AGG + Chr3:71220097-71220116 None:intergenic 40.0%
TGGCCTTTGTATCGCAAATA+TGG - Chr3:71220091-71220110 MsG0380015510.01.T02:intron 40.0%
TGTATCGGGATACATATCGT+GGG - Chr3:71222146-71222165 MsG0380015510.01.T02:intron 40.0%
TGTGACCCATCAGATATTAC+AGG + Chr3:71221900-71221919 None:intergenic 40.0%
TTACAATCTTGACAGGAGCA+AGG - Chr3:71222818-71222837 MsG0380015510.01.T02:CDS 40.0%
TTAGGGTTACCTCTAAATCG+AGG + Chr3:71219963-71219982 None:intergenic 40.0%
TTCAGTTCTTCAGATACAGC+AGG + Chr3:71220882-71220901 None:intergenic 40.0%
TTCCAGTAGAACACCATACA+GGG - Chr3:71222726-71222745 MsG0380015510.01.T02:intron 40.0%
TTCTAGTCAGATGAGCTTGT+AGG - Chr3:71220544-71220563 MsG0380015510.01.T02:intron 40.0%
TTGACAGGAGCAAGGAATAT+TGG - Chr3:71222826-71222845 MsG0380015510.01.T02:CDS 40.0%
TTGTATCGGGATACATATCG+TGG - Chr3:71222145-71222164 MsG0380015510.01.T02:intron 40.0%
TTTCCAGTAGAACACCATAC+AGG - Chr3:71222725-71222744 MsG0380015510.01.T02:intron 40.0%
! ACCTGAATTGATTTCGCATG+TGG - Chr3:71221268-71221287 MsG0380015510.01.T02:intron 40.0%
! AGAGTGCTCAAAACCTTATC+AGG + Chr3:71220804-71220823 None:intergenic 40.0%
! CAAATATGGCCATGCTTTTG+AGG - Chr3:71220105-71220124 MsG0380015510.01.T02:intron 40.0%
! GAACCAATTTGCTTCAGTTC+GGG + Chr3:71221517-71221536 None:intergenic 40.0%
! GATGGTTCTTCGTGTTGATA+AGG - Chr3:71219813-71219832 MsG0380015510.01.T02:intron 40.0%
! GCTGATAAGCTAGCTTATAG+TGG - Chr3:71220260-71220279 MsG0380015510.01.T02:intron 40.0%
! GGACAATGGTAATGCGATAA+CGG - Chr3:71223193-71223212 MsG0380015510.01.T02:five_prime_UTR 40.0%
! GTTGATTCTTGGACTCAGTA+TGG - Chr3:71222337-71222356 MsG0380015510.01.T02:intron 40.0%
!! AGCTAGCTTATAGTGGATAG+AGG - Chr3:71220267-71220286 MsG0380015510.01.T02:intron 40.0%
!! GCCCTAATTTTCATTGGTTG+AGG + Chr3:71220942-71220961 None:intergenic 40.0%
!! TATAGCGGACAAGCTTATAG+AGG - Chr3:71220234-71220253 MsG0380015510.01.T02:intron 40.0%
!!! CACCCATGCCTAGTTTTTTA+AGG + Chr3:71221417-71221436 None:intergenic 40.0%
!!! CGGTTTTGAAAGGATAGGTT+CGG - Chr3:71222489-71222508 MsG0380015510.01.T02:intron 40.0%
!!! TCCCATGGCTGTTTTTGTAT+CGG - Chr3:71222131-71222150 MsG0380015510.01.T02:intron 40.0%
AACCTTGGACCTCGATTTAG+AGG - Chr3:71219951-71219970 MsG0380015510.01.T02:intron 45.0%
AAGAGCAGAGAAACAGAGGA+TGG - Chr3:71221756-71221775 MsG0380015510.01.T02:CDS 45.0%
AATCTACAACCGACCCTGTA+TGG + Chr3:71222742-71222761 None:intergenic 45.0%
AATTCGGAGCCATTGTTGTG+AGG + Chr3:71219591-71219610 None:intergenic 45.0%
ACCCTGATATGTAACTCCCA+TGG - Chr3:71222116-71222135 MsG0380015510.01.T02:intron 45.0%
ACGCGTGAAATCAAGGAAGT+TGG - Chr3:71220825-71220844 MsG0380015510.01.T02:intron 45.0%
AGATGTTCAGTTCGCAGACA+AGG + Chr3:71222239-71222258 None:intergenic 45.0%
AGCCATGGGAGTTACATATC+AGG + Chr3:71222121-71222140 None:intergenic 45.0%
AGTAGAACACCATACAGGGT+CGG - Chr3:71222730-71222749 MsG0380015510.01.T02:intron 45.0%
AGTGGTAAGCACGTAAAGTG+GGG + Chr3:71221187-71221206 None:intergenic 45.0%
ATAGAAACAGAGCGTGGTGT+GGG - Chr3:71221814-71221833 MsG0380015510.01.T02:CDS 45.0%
ATGGGTCACACAAACCTTAC+CGG - Chr3:71221910-71221929 MsG0380015510.01.T02:CDS 45.0%
CACAACAATGGCTCCGAATT+TGG - Chr3:71219591-71219610 MsG0380015510.01.T02:CDS 45.0%
CAGTAAACGTAGGGTTTCTG+AGG - Chr3:71219855-71219874 MsG0380015510.01.T02:CDS 45.0%
CAGTTCGGGATAACCAGAAA+CGG + Chr3:71221503-71221522 None:intergenic 45.0%
CCCGATACAAAAACAGCCAT+GGG + Chr3:71222135-71222154 None:intergenic 45.0%
CTCTCTGTGTTTGTGAGTGA+GGG + Chr3:71219556-71219575 None:intergenic 45.0%
GAACAGAATGAAGAGGTCGA+AGG - Chr3:71223119-71223138 MsG0380015510.01.T02:five_prime_UTR 45.0%
GAGTGGTAAGCACGTAAAGT+GGG + Chr3:71221188-71221207 None:intergenic 45.0%
GCCACATGCGAAATCAATTC+AGG + Chr3:71221272-71221291 None:intergenic 45.0%
GCCATGGGAGTTACATATCA+GGG + Chr3:71222120-71222139 None:intergenic 45.0%
GTTAGCAGTCTCATCAAGGT+TGG - Chr3:71219775-71219794 MsG0380015510.01.T02:intron 45.0%
GTTCGCAGACAAGGAAAGTT+TGG + Chr3:71222230-71222249 None:intergenic 45.0%
TACCACTCAGACACTTGACA+AGG - Chr3:71221200-71221219 MsG0380015510.01.T02:intron 45.0%
TACCTCTAAATCGAGGTCCA+AGG + Chr3:71219956-71219975 None:intergenic 45.0%
TACCTTGTCAAGTGTCTGAG+TGG + Chr3:71221205-71221224 None:intergenic 45.0%
TCAACACGAAGAACCATCAC+CGG + Chr3:71219811-71219830 None:intergenic 45.0%
TCACTTGCAGAAACCGCATT+GGG + Chr3:71221990-71222009 None:intergenic 45.0%
TCCAAAAGCAGATGGAGTGA+TGG + Chr3:71222994-71223013 None:intergenic 45.0%
TCCCGATACAAAAACAGCCA+TGG + Chr3:71222136-71222155 None:intergenic 45.0%
TCGGTGCATGGTAGTCAAAT+TGG - Chr3:71221543-71221562 MsG0380015510.01.T02:CDS 45.0%
TCTCTCTGTGTTTGTGAGTG+AGG + Chr3:71219557-71219576 None:intergenic 45.0%
TGAAACGTAAGCACCCATGT+CGG + Chr3:71219686-71219705 None:intergenic 45.0%
TGAAGAACTGAAGGATGCTC+TGG - Chr3:71220890-71220909 MsG0380015510.01.T02:intron 45.0%
TGAGTGGTAAGCACGTAAAG+TGG + Chr3:71221189-71221208 None:intergenic 45.0%
TGTTGTGGCTGATCCTGATA+AGG - Chr3:71220788-71220807 MsG0380015510.01.T02:intron 45.0%
TTCACTTGCAGAAACCGCAT+TGG + Chr3:71221991-71222010 None:intergenic 45.0%
TTGATTTCGCATGTGGCCAT+GGG - Chr3:71221275-71221294 MsG0380015510.01.T02:intron 45.0%
! AAAGTACCCAGAAGTGGACA+TGG - Chr3:71219633-71219652 MsG0380015510.01.T02:intron 45.0%
! ATCAAGGAAGTTGGTCCTGA+TGG - Chr3:71220834-71220853 MsG0380015510.01.T02:intron 45.0%
! ATTGATTTCGCATGTGGCCA+TGG - Chr3:71221274-71221293 MsG0380015510.01.T02:intron 45.0%
! GGATACTTGCTAGACTGGTT+CGG - Chr3:71222167-71222186 MsG0380015510.01.T02:intron 45.0%
! TCAAGGAAGTTGGTCCTGAT+GGG - Chr3:71220835-71220854 MsG0380015510.01.T02:intron 45.0%
! TCCATCACTCCATCTGCTTT+TGG - Chr3:71222990-71223009 MsG0380015510.01.T02:CDS 45.0%
!!! CCCATGGCTGTTTTTGTATC+GGG - Chr3:71222132-71222151 MsG0380015510.01.T02:intron 45.0%
AGAAGATACTGGAATGGGCG+AGG - Chr3:71223163-71223182 MsG0380015510.01.T02:five_prime_UTR 50.0%
AGATACAGCAGGTACCACCT+TGG + Chr3:71220871-71220890 None:intergenic 50.0%
ATGAATACGCCGGCGATACA+TGG - Chr3:71222058-71222077 MsG0380015510.01.T02:intron 50.0%
CACTCTCACGCGTGAAATCA+AGG - Chr3:71220818-71220837 MsG0380015510.01.T02:intron 50.0%
CATGGGTCGATACTAGAACC+CGG + Chr3:71221932-71221951 None:intergenic 50.0%
GACCCTGTATGGTGTTCTAC+TGG + Chr3:71222731-71222750 None:intergenic 50.0%
GACTCGATAGAAACAGAGCG+TGG - Chr3:71221808-71221827 MsG0380015510.01.T02:CDS 50.0%
GATAGAAACAGAGCGTGGTG+TGG - Chr3:71221813-71221832 MsG0380015510.01.T02:CDS 50.0%
GCTACGCGAACAGAATGAAG+AGG - Chr3:71223112-71223131 MsG0380015510.01.T02:intron 50.0%
GGTCCAAGGTTTCAGCAACA+TGG + Chr3:71219942-71219961 None:intergenic 50.0%
GTCGATACTAGAACCCGGTA+AGG + Chr3:71221927-71221946 None:intergenic 50.0%
GTGAAGAACATCGCCGACAT+GGG - Chr3:71219670-71219689 MsG0380015510.01.T02:intron 50.0%
GTGGTAAGCACGTAAAGTGG+GGG + Chr3:71221186-71221205 None:intergenic 50.0%
TGAATACGCCGGCGATACAT+GGG - Chr3:71222059-71222078 MsG0380015510.01.T02:intron 50.0%
TGGGTCACACAAACCTTACC+GGG - Chr3:71221911-71221930 MsG0380015510.01.T02:CDS 50.0%
TTGGTCACTTCTTGCCCATC+AGG + Chr3:71220852-71220871 None:intergenic 50.0%
! AGGTGATGACGACAGTGAAG+AGG - Chr3:71223139-71223158 MsG0380015510.01.T02:five_prime_UTR 50.0%
! CAAGGTTGGTCGAATCGAAC+CGG - Chr3:71219789-71219808 MsG0380015510.01.T02:intron 50.0%
! CGAAGCAAAGTACCCAGAAG+TGG - Chr3:71219627-71219646 MsG0380015510.01.T02:intron 50.0%
! GCATAACTTCGGCTTGCTTC+CGG + Chr3:71221466-71221485 None:intergenic 50.0%
! TCGTGGGATACTTGCTAGAC+TGG - Chr3:71222162-71222181 MsG0380015510.01.T02:intron 50.0%
! TGATGGGCAAGAAGTGACCA+AGG - Chr3:71220851-71220870 MsG0380015510.01.T02:intron 50.0%
!! CTAGACTGGTTCGGTTCAAC+TGG - Chr3:71222176-71222195 MsG0380015510.01.T02:intron 50.0%
!! TGGTTCTTTGGTTCGGTGCA+TGG - Chr3:71221531-71221550 MsG0380015510.01.T02:CDS 50.0%
!! TGGTTTTGCAGGAGGCAATG+CGG - Chr3:71221106-71221125 MsG0380015510.01.T02:intron 50.0%
AGAAACCGCATTGGGCTGCA+CGG + Chr3:71221982-71222001 None:intergenic 55.0%
AGGCGTATCCCATGTATCGC+CGG + Chr3:71222070-71222089 None:intergenic 55.0%
ATCACCGCCATGTCCACTTC+TGG + Chr3:71219643-71219662 None:intergenic 55.0%
CCTGCGACGCGTAGTCATTT+GGG - Chr3:71222087-71222106 MsG0380015510.01.T02:intron 55.0%
GCGCCATGTTGCTGAAACCT+TGG - Chr3:71219936-71219955 MsG0380015510.01.T02:intron 55.0%
GGACATGGCGGTGATGATTC+AGG - Chr3:71219648-71219667 MsG0380015510.01.T02:intron 55.0%
GGTGAAGAACATCGCCGACA+TGG - Chr3:71219669-71219688 MsG0380015510.01.T02:intron 55.0%
GTACCCAGAAGTGGACATGG+CGG - Chr3:71219636-71219655 MsG0380015510.01.T02:intron 55.0%
TCACCGCCATGTCCACTTCT+GGG + Chr3:71219642-71219661 None:intergenic 55.0%
TCTCTGAGCTCTCACGTCGT+CGG - Chr3:71219743-71219762 MsG0380015510.01.T02:intron 55.0%
TGGGCAAGAAGTGACCAAGG+TGG - Chr3:71220854-71220873 MsG0380015510.01.T02:intron 55.0%
TGGTCGAATCGAACCGGTGA+TGG - Chr3:71219795-71219814 MsG0380015510.01.T02:intron 55.0%
TTTGCAGGAGGCAATGCGGA+AGG - Chr3:71221110-71221129 MsG0380015510.01.T02:intron 55.0%
! GGCGAGGTTGATCTGGACAA+TGG - Chr3:71223179-71223198 MsG0380015510.01.T02:five_prime_UTR 55.0%
! TGGAATGGGCGAGGTTGATC+TGG - Chr3:71223172-71223191 MsG0380015510.01.T02:five_prime_UTR 55.0%
ATGCGGAAGGCTGAAGCTGC+TGG - Chr3:71221123-71221142 MsG0380015510.01.T02:intron 60.0%
CCCAAATGACTACGCGTCGC+AGG + Chr3:71222090-71222109 None:intergenic 60.0%
GCCTGCGACGCGTAGTCATT+TGG - Chr3:71222086-71222105 MsG0380015510.01.T02:intron 60.0%
CTGGGCCGTGCAGCCCAATG+CGG - Chr3:71221974-71221993 MsG0380015510.01.T02:intron 70.0%
Chromosome Type Strat End Strand Name
Chr3 gene 71219492 71223220 71219492 ID=MsG0380015510.01;Name=MsG0380015510.01
Chr3 mRNA 71219492 71223220 71219492 ID=MsG0380015510.01.T01;Parent=MsG0380015510.01;Name=MsG0380015510.01.T01;_AED=0.47;_eAED=0.47;_QI=106|0.83|0.85|1|0.83|0.71|7|0|329
Chr3 five_prime_UTR 71223115 71223220 71223115 ID=MsG0380015510.01.T01:five_prime_utr;Parent=MsG0380015510.01.T01
Chr3 CDS 71222740 71223114 71222740 ID=MsG0380015510.01.T01:cds;Parent=MsG0380015510.01.T01
Chr3 CDS 71222586 71222642 71222586 ID=MsG0380015510.01.T01:cds;Parent=MsG0380015510.01.T01
Chr3 CDS 71221702 71221935 71221702 ID=MsG0380015510.01.T01:cds;Parent=MsG0380015510.01.T01
Chr3 CDS 71221491 71221595 71221491 ID=MsG0380015510.01.T01:cds;Parent=MsG0380015510.01.T01
Chr3 CDS 71219814 71219879 71219814 ID=MsG0380015510.01.T01:cds;Parent=MsG0380015510.01.T01
Chr3 CDS 71219492 71219644 71219492 ID=MsG0380015510.01.T01:cds;Parent=MsG0380015510.01.T01
Chr3 mRNA 71219492 71223220 71219492 ID=MsG0380015510.01.T02;Parent=MsG0380015510.01;Name=MsG0380015510.01.T02;_AED=0.46;_eAED=0.46;_QI=106|0.8|0.83|1|1|1|6|0|329
Chr3 five_prime_UTR 71223115 71223220 71223115 ID=MsG0380015510.01.T02:five_prime_utr;Parent=MsG0380015510.01.T02
Chr3 CDS 71222740 71223114 71222740 ID=MsG0380015510.01.T02:cds;Parent=MsG0380015510.01.T02
Chr3 CDS 71222586 71222642 71222586 ID=MsG0380015510.01.T02:cds;Parent=MsG0380015510.01.T02
Chr3 CDS 71221702 71221935 71221702 ID=MsG0380015510.01.T02:cds;Parent=MsG0380015510.01.T02
Chr3 CDS 71221491 71221595 71221491 ID=MsG0380015510.01.T02:cds;Parent=MsG0380015510.01.T02
Chr3 CDS 71219814 71219879 71219814 ID=MsG0380015510.01.T02:cds;Parent=MsG0380015510.01.T02
Chr3 CDS 71219492 71219644 71219492 ID=MsG0380015510.01.T02:cds;Parent=MsG0380015510.01.T02
Gene Sequence

>MsG0380015510.01.T02

ATGGCTCCGAATTTGGAATGTCGCATGTACGAAGCAAAGTACCCAGAAGTGGACATGGCGGTGATGATTCAGGTGAAGAACATCGCCGACATGGGTGCTTACGTTTCACTTCTCGAATACAACAACATCGAGGGTATGATTCTATTCTCTGAGCTCTCACGTCGTCGGATTCGTAGTGTTAGCAGTCTCATCAAGGTTGGTCGAATCGAACCGGTGATGGTTCTTCGTGTTGATAAGGAAAAGGGTTATATCGATCTCAGTAAACGTAGGGTTTCTGAGGAAGATATTCAAACTTGTGAAGAACGGTATAATAAGAGTAAACTCGTTCACTCTATTATGCGCCATGTTGCTGAAACCTTGGACCTCGATTTAGAGGATCTTTATGTGCACATTGGATGGCCTTTGTATCGCAAATATGGCCATGCTTTTGAGGCATTCAAAATTGTTGTGGCTGATCCTGATAAGGTTTTGAGCACTCTCACGCGTGAAATCAAGGAAGTTGGTCCTGATGGGCAAGAAGTGACCAAGGTGGTACCTGCTGTATCTGAAGAACTGAAGGATGCTCTGGTGAATAATATTAGAAGAAGAATGACTCCTCAACCAATGAAAATTAGGGCGGATATTGAAATGAAATGTTTTCAATTTGATGGAGTTATCCACATTAAGGAGGCAATGCGGAAGGCTGAAGCTGCTGGAAATGATGACTGCCCTGTGAAAATTAAACTTGTTGCTCCCCCACTTTACGTGCTTACCACTCAGACACTTGACAAGGAGCAAGGAATATTGGTTCTTGAAAATGCCATTGCTAGTTGCACTGAATCAATAGAAAACACAAGGGTGAGTGAACGTGATGATAATTTGCTTTTTGAGCATATGCGTAAGCTACGCGAACAGAATGAAGAGGTCGAAGGTGATGACGACAGTGAAGAGGAAGAAGATACTGGAATGGGCGAGGTTGATCTGGACAATGGTAATGCGATAACGGAGTGA

>MsG0380015510.01.T01

ATGGCTCCGAATTTGGAATGTCGCATGTACGAAGCAAAGTACCCAGAAGTGGACATGGCGGTGATGATTCAGGTGAAGAACATCGCCGACATGGGTGCTTACGTTTCACTTCTCGAATACAACAACATCGAGGGTATGATTCTATTCTCTGAGCTCTCACGTCGTCGGATTCGTAGTGTTAGCAGTCTCATCAAGGTTGGTCGAATCGAACCGGTGATGGTTCTTCGTGTTGATAAGGAAAAGGGTTATATCGATCTCAGTAAACGTAGGGTTTCTGAGGAAGATATTCAAACTTGTGAAGAACGGTATAATAAGAGTAAACTCGTTCACTCTATTATGCGCCATGTTGCTGAAACCTTGGACCTCGATTTAGAGGATCTTTATGTGCACATTGGATGGCCTTTGTATCGCAAATATGGCCATGCTTTTGAGGCATTCAAAATTGTTGTGGCTGATCCTGATAAGGTTTTGAGCACTCTCACGCGTGAAATCAAGGAAGTTGGTCCTGATGGGCAAGAAGTGACCAAGGTGGTACCTGCTGTATCTGAAGAACTGAAGGATGCTCTGGTGAATAATATTAGAAGAAGAATGACTCCTCAACCAATGAAAATTAGGGCGGATATTGAAATGAAATGTTTTCAATTTGATGGAGTTATCCACATTAAGGAGGCAATGCGGAAGGCTGAAGCTGCTGGAAATGATGACTGCCCTGTGAAAATTAAACTTGTTGCTCCCCCACTTTACGTGCTTACCACTCAGACACTTGACAAGGAGCAAGGAATATTGGTTCTTGAAAATGCCATTGCTAGTTGCACTGAATCAATAGAAAACACAAGGGTGAGTGAACGTGATGATAATTTGCTTTTTGAGCATATGCGTAAGCTACGCGAACAGAATGAAGAGGTCGAAGGTGATGACGACAGTGAAGAGGAAGAAGATACTGGAATGGGCGAGGTTGATCTGGACAATGGTAATGCGATAACGGAGTGA
Protein sequence

>MsG0380015510.01.T02

MAPNLECRMYEAKYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSELSRRRIRSVSSLIKVGRIEPVMVLRVDKEKGYIDLSKRRVSEEDIQTCEERYNKSKLVHSIMRHVAETLDLDLEDLYVHIGWPLYRKYGHAFEAFKIVVADPDKVLSTLTREIKEVGPDGQEVTKVVPAVSEELKDALVNNIRRRMTPQPMKIRADIEMKCFQFDGVIHIKEAMRKAEAAGNDDCPVKIKLVAPPLYVLTTQTLDKEQGILVLENAIASCTESIENTRVSERDDNLLFEHMRKLREQNEEVEGDDDSEEEEDTGMGEVDLDNGNAITE*

>MsG0380015510.01.T01

MAPNLECRMYEAKYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSELSRRRIRSVSSLIKVGRIEPVMVLRVDKEKGYIDLSKRRVSEEDIQTCEERYNKSKLVHSIMRHVAETLDLDLEDLYVHIGWPLYRKYGHAFEAFKIVVADPDKVLSTLTREIKEVGPDGQEVTKVVPAVSEELKDALVNNIRRRMTPQPMKIRADIEMKCFQFDGVIHIKEAMRKAEAAGNDDCPVKIKLVAPPLYVLTTQTLDKEQGILVLENAIASCTESIENTRVSERDDNLLFEHMRKLREQNEEVEGDDDSEEEEDTGMGEVDLDNGNAITE*