AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480022791.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480022791.01.T01 MTR_4g096820 93.039 747 40 4 1 745 1 737 0.0 1147
MsG0480022791.01.T01 MTR_4g073330 54.839 558 188 22 202 745 145 652 2.42e-162 484
MsG0480022791.01.T01 MTR_3g107350 49.836 305 90 14 446 741 2 252 1.27e-53 186
MsG0480022791.01.T01 MTR_3g107330 60.377 106 39 2 306 411 55 157 3.34e-35 133
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480022791.01.T01 AT3G01160 47.903 739 311 23 21 736 4 691 6.53e-164 490

Find 173 sgRNAs with CRISPR-Local

Find 307 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTCGTCATTACTATAAAA+TGG 0.210954 4:-76691155 MsG0480022791.01.T01:CDS
TTCTTCTTCTTCTTAATATC+AGG 0.236398 4:+76688405 None:intergenic
GAAATCAAAGCAAGATAAAT+TGG 0.239661 4:-76687563 MsG0480022791.01.T01:CDS
GAACTCCGGCGGTGTGTTTC+CGG 0.247725 4:+76691522 None:intergenic
CTGCTTCTGTGCCAGCTGCC+TGG 0.262136 4:+76687708 None:intergenic
TAAATTGGAGTTATCATCTT+TGG 0.267442 4:-76687548 MsG0480022791.01.T01:CDS
AGATATAAGCAAACATATTA+TGG 0.278395 4:-76688610 MsG0480022791.01.T01:CDS
CTGCGAATTAGCCTTATCTT+TGG 0.280384 4:+76691186 None:intergenic
ATAAACTATACCTGAATTTC+AGG 0.285468 4:+76690890 None:intergenic
CCACCGATCCACAATTTAAA+AGG 0.293286 4:-76688110 MsG0480022791.01.T01:intron
AAGCTCTTCTTTGCTTGCTT+TGG 0.294428 4:+76688326 None:intergenic
ACTATTTATCCAACCGAGTT+TGG 0.299625 4:-76690394 MsG0480022791.01.T01:CDS
TAGGCTGGCTGTTGTTAATA+TGG 0.299951 4:-76690600 MsG0480022791.01.T01:CDS
ATGAATGAGGAGGAAGTTAA+AGG 0.319405 4:-76690361 MsG0480022791.01.T01:CDS
GAAGACAATTGTGTTTCTTT+CGG 0.328663 4:+76687637 None:intergenic
CATCGAATCCACTTGACTTA+AGG 0.335239 4:-76689520 MsG0480022791.01.T01:CDS
TCTTTGTTCTCGTAGTTTGC+AGG 0.342246 4:+76689363 None:intergenic
TTTATCAGACTTCTTCGAAT+TGG 0.349081 4:+76691393 None:intergenic
TGCGAATTAGCCTTATCTTT+GGG 0.350288 4:+76691187 None:intergenic
CATCGCAATGGGATCCAAAA+AGG 0.357185 4:-76691491 MsG0480022791.01.T01:exon
GCAACCTTTGTTTGATGCTT+TGG 0.358480 4:+76691289 None:intergenic
TGGCTACCCCATCCATATCT+TGG 0.367484 4:+76688346 None:intergenic
AAGGAGAAGGGTGGGGAAGA+AGG 0.368948 4:-76687598 MsG0480022791.01.T01:CDS
GCGAAACCGGAGATTGATAA+TGG 0.375886 4:-76691037 MsG0480022791.01.T01:CDS
AGATCATAAGCTCCAAGATA+TGG 0.384646 4:-76688358 MsG0480022791.01.T01:CDS
GGATCATCAAATGCATTGTT+TGG 0.388107 4:+76688174 None:intergenic
AGATGATGATGCCATGGATA+TGG 0.388730 4:-76688658 MsG0480022791.01.T01:CDS
ACAGTAAAGTTGAACTTACT+TGG 0.391491 4:-76689317 MsG0480022791.01.T01:CDS
AGAGGATGAACCTGAAATTC+AGG 0.394746 4:-76690900 MsG0480022791.01.T01:intron
AAGGTTTATTCCAGACGATA+TGG 0.401282 4:-76689501 MsG0480022791.01.T01:CDS
AGCAGGCATGTGGTTGGTAT+TGG 0.402016 4:-76687328 MsG0480022791.01.T01:three_prime_UTR
GGATAATGATGATGAATTAG+AGG 0.406042 4:-76691080 MsG0480022791.01.T01:CDS
ATCTTGCAAACCTGTATTGA+AGG 0.406255 4:+76688629 None:intergenic
CGCCGTGTATGCCAGGCAGC+TGG 0.411298 4:-76687719 MsG0480022791.01.T01:CDS
AGGAGAAGGGTGGGGAAGAA+GGG 0.411300 4:-76687597 MsG0480022791.01.T01:CDS
TCACCATCAAATAGAGCAAC+AGG 0.414563 4:+76690337 None:intergenic
CCTCCTCATTCATACGTTGA+AGG 0.416581 4:+76690371 None:intergenic
ATTTATACAGAACTTCTCAT+TGG 0.417011 4:-76687149 MsG0480022791.01.T01:three_prime_UTR
ATTCATATATAACTTCTCAT+AGG 0.419026 4:-76687197 MsG0480022791.01.T01:three_prime_UTR
GGGCCTGTTGCTCTATTTGA+TGG 0.419143 4:-76690340 MsG0480022791.01.T01:CDS
CAATTGTCTTCTGATGGTTC+TGG 0.419907 4:-76687625 MsG0480022791.01.T01:CDS
TATTGACATCAGAGGATAGC+TGG 0.422896 4:+76687494 None:intergenic
AGTTCATTAGCCCCACCTAA+TGG 0.423520 4:-76690433 MsG0480022791.01.T01:CDS
TTCCATTCAAGTGAGTAGAT+TGG 0.427627 4:+76687411 None:intergenic
ACCGATTTGACCAGTCCATT+AGG 0.435915 4:+76690418 None:intergenic
ACTTTGTCATTACTGTGTAA+TGG 0.439145 4:+76691370 None:intergenic
GTCTGAAGAGAGCGGTGATT+CGG 0.446713 4:-76691008 MsG0480022791.01.T01:CDS
CAAACATATTATGGAAAAGA+AGG 0.449002 4:-76688601 MsG0480022791.01.T01:CDS
ACCTCTGATGCAACATCCTT+AGG 0.449293 4:+76689464 None:intergenic
GCAGGAGCGCCGTGTATGCC+AGG 0.451654 4:-76687726 MsG0480022791.01.T01:intron
GAAAATCACAATTTAAGAAA+AGG 0.454669 4:-76687459 MsG0480022791.01.T01:CDS
GAAAGTTAAGAATGCGAAAC+CGG 0.457632 4:-76691050 MsG0480022791.01.T01:CDS
ACCTAATGGACTGGTCAAAT+CGG 0.462020 4:-76690419 MsG0480022791.01.T01:CDS
TTCGTCGTCGGCATCGCAAT+GGG 0.468489 4:-76691502 MsG0480022791.01.T01:exon
GATGACAAGGGGACAGGTAC+TGG 0.470311 4:-76688288 MsG0480022791.01.T01:CDS
AGAACCACGACGACAACAAA+GGG 0.472013 4:-76691459 MsG0480022791.01.T01:CDS
TCAGTTCCATTATCAATCTC+CGG 0.476957 4:+76691031 None:intergenic
GTGAAGAATTATCAGTAGAA+AGG 0.480256 4:-76687675 MsG0480022791.01.T01:CDS
GAACAAAGATTTCTATTCTC+GGG 0.481122 4:-76689349 MsG0480022791.01.T01:CDS
AGAACAAAGATTTCTATTCT+CGG 0.483286 4:-76689350 MsG0480022791.01.T01:CDS
ACCTTTGTTTGATGCTTTGG+TGG 0.487769 4:+76691292 None:intergenic
CTGGTATGAAGGAGAAGGGT+GGG 0.492784 4:-76687606 MsG0480022791.01.T01:CDS
TTCTGATGGTTCTGGTATGA+AGG 0.495916 4:-76687617 MsG0480022791.01.T01:CDS
ATGGAGGTGACCTTCAATAC+AGG 0.496342 4:-76688639 MsG0480022791.01.T01:CDS
AGGCTTAGAACACAATGGTT+AGG 0.497747 4:+76687114 None:intergenic
GCTGGCACAGAAGCAGCAGA+AGG 0.499989 4:-76687701 MsG0480022791.01.T01:CDS
GGGTTTACCTCGCTTATCGA+CGG 0.500012 4:+76691207 None:intergenic
TGCCAGCTGCCTGGCATACA+CGG 0.501362 4:+76687717 None:intergenic
ATAGCTGGCTCAGTTGGAAA+TGG 0.501819 4:-76688808 MsG0480022791.01.T01:intron
ATTGTGATAGCTGGCTCAGT+TGG 0.502360 4:-76688814 MsG0480022791.01.T01:intron
GATGTCAATACAAAGAAAGC+TGG 0.502558 4:-76687481 MsG0480022791.01.T01:CDS
TGTTTGAATTCCATATCGTC+TGG 0.504264 4:+76689491 None:intergenic
GCGATGCCGACGACGAACTC+CGG 0.504422 4:+76691508 None:intergenic
GAAACACAATTGTCTTCTGA+TGG 0.505036 4:-76687631 MsG0480022791.01.T01:CDS
TGAAGAATTATCAGTAGAAA+GGG 0.505273 4:-76687674 MsG0480022791.01.T01:CDS
TGAATGAGGAGGAAGTTAAA+GGG 0.505616 4:-76690360 MsG0480022791.01.T01:CDS
GAGACCTTGTGAAATTGTTA+CGG 0.506522 4:-76687388 MsG0480022791.01.T01:three_prime_UTR
GGGGACAGGTACTGGTCTCA+AGG 0.508304 4:-76688280 MsG0480022791.01.T01:CDS
TGATTCGGAGGCTGATGCTA+TGG 0.508685 4:-76690993 MsG0480022791.01.T01:CDS
GAAGGAGCTGCTGAAGTTTG+TGG 0.508723 4:+76691587 None:intergenic
GCGGAAATTCACTGACGAGC+AGG 0.510238 4:-76689259 MsG0480022791.01.T01:intron
GTCCAATCTACTCACTTGAA+TGG 0.511568 4:-76687413 MsG0480022791.01.T01:three_prime_UTR
GGTTTACCTCGCTTATCGAC+GGG 0.511757 4:+76691208 None:intergenic
GTTCGTCGTCGGCATCGCAA+TGG 0.511959 4:-76691503 MsG0480022791.01.T01:exon
GACAATAATTCAGATGAAGA+TGG 0.518699 4:-76688681 MsG0480022791.01.T01:CDS
AAGTGATGAAGACGATAGTG+AGG 0.522461 4:-76690305 MsG0480022791.01.T01:CDS
GCGAGGTAAACCCAAAGATA+AGG 0.522552 4:-76691197 MsG0480022791.01.T01:CDS
TTATCGACGGGTGCAGAAGA+AGG 0.525290 4:+76691220 None:intergenic
AGAGAGAACGGCAAAGGTGA+AGG 0.525755 4:+76691569 None:intergenic
ATCTGAATTATTGTCAAGCA+AGG 0.527250 4:+76688689 None:intergenic
TGCGTGCATATGAAAAGAGC+AGG 0.528143 4:-76690228 MsG0480022791.01.T01:CDS
AACCATTGTGTTCTAAGCCT+CGG 0.529208 4:-76687111 MsG0480022791.01.T01:three_prime_UTR
GGAATAAACCTTAAGTCAAG+TGG 0.531217 4:+76689512 None:intergenic
CACATTTACAAAGAAAATGA+TGG 0.532366 4:-76689560 MsG0480022791.01.T01:CDS
AGATTGAGAAAGAAACTCAT+AGG 0.533078 4:-76690619 MsG0480022791.01.T01:CDS
CGAAGATCCTCGATTTGCCA+TGG 0.535647 4:-76691341 MsG0480022791.01.T01:CDS
TTTGTAAATGTGATCTGCTG+TGG 0.536863 4:+76689571 None:intergenic
TCCTAAGGATGTTGCATCAG+AGG 0.537358 4:-76689465 MsG0480022791.01.T01:intron
AGTTGAACTTACTTGGGATG+AGG 0.538968 4:-76689310 MsG0480022791.01.T01:CDS
CTTGCTGATGACAAGGGGAC+AGG 0.541409 4:-76688294 MsG0480022791.01.T01:CDS
CGTTGAAGGCCAAACTCGGT+TGG 0.544452 4:+76690385 None:intergenic
AGAACAGAGTAGTGATGAGG+AGG 0.546273 4:-76691101 MsG0480022791.01.T01:CDS
TTCGAGCAAATACTTTGAAG+CGG 0.548379 4:-76689278 MsG0480022791.01.T01:CDS
ATAAGCTCCAAGATATGGAT+GGG 0.550287 4:-76688353 MsG0480022791.01.T01:CDS
GGAATTCAAACAGCCTCCTA+AGG 0.550469 4:-76689480 MsG0480022791.01.T01:CDS
CATAAGCTCCAAGATATGGA+TGG 0.551085 4:-76688354 MsG0480022791.01.T01:CDS
TTCAAAGTATTTGCTCGAAG+AGG 0.553042 4:+76689282 None:intergenic
TGGCCTTCAACGTATGAATG+AGG 0.554948 4:-76690374 MsG0480022791.01.T01:CDS
AAGAACCACGACGACAACAA+AGG 0.555045 4:-76691460 MsG0480022791.01.T01:CDS
CAAAGATAAGGCTAATTCGC+AGG 0.556367 4:-76691185 MsG0480022791.01.T01:CDS
GAAGAACAATGGCAAGCGTA+AGG 0.557289 4:-76691425 MsG0480022791.01.T01:CDS
AGTAGAACAGAGTAGTGATG+AGG 0.560231 4:-76691104 MsG0480022791.01.T01:CDS
TGGTATGAAGGAGAAGGGTG+GGG 0.563117 4:-76687605 MsG0480022791.01.T01:CDS
CAGTAAAGTTGAACTTACTT+GGG 0.565191 4:-76689316 MsG0480022791.01.T01:CDS
ATTTGACCAGTCCATTAGGT+GGG 0.566867 4:+76690422 None:intergenic
CTGGCACAGAAGCAGCAGAA+GGG 0.567081 4:-76687700 MsG0480022791.01.T01:CDS
TGGCTGTTGTTAATATGGAC+TGG 0.567725 4:-76690595 MsG0480022791.01.T01:CDS
TGAGAAAGAAACTCATAGGC+TGG 0.567983 4:-76690615 MsG0480022791.01.T01:CDS
TTACGGCCCCTTCCACATGC+CGG 0.569934 4:-76687371 MsG0480022791.01.T01:three_prime_UTR
GGGACAGGTACTGGTCTCAA+GGG 0.570096 4:-76688279 MsG0480022791.01.T01:CDS
TCTTCCCTTTGTTGTCGTCG+TGG 0.570184 4:+76691455 None:intergenic
GGTTGGTATTGGATCTATTG+AGG 0.571098 4:-76687317 MsG0480022791.01.T01:three_prime_UTR
TGTTTCAGAGAGAACGGCAA+AGG 0.573583 4:+76691563 None:intergenic
CATACGTTGAAGGCCAAACT+CGG 0.576188 4:+76690381 None:intergenic
ACTGCTTGTTTCAGAGAGAA+CGG 0.576342 4:+76691557 None:intergenic
ATTTAAGAAAAGGAAGCACT+AGG 0.576581 4:-76687449 MsG0480022791.01.T01:exon
ATCATGAAAATCTTCTTCAT+CGG 0.577014 4:+76690273 None:intergenic
GGTTCTGGTATGAAGGAGAA+GGG 0.577877 4:-76687610 MsG0480022791.01.T01:CDS
CATATATAACTTCTCATAGG+TGG 0.578056 4:-76687194 MsG0480022791.01.T01:three_prime_UTR
ATTAGCCCCACCTAATGGAC+TGG 0.582985 4:-76690428 MsG0480022791.01.T01:CDS
TTTCTTTGTATTGACATCAG+AGG 0.587167 4:+76687486 None:intergenic
TAAAGAAATAGATATTGATA+CGG 0.588626 4:-76690957 MsG0480022791.01.T01:CDS
TCTGGTATGAAGGAGAAGGG+TGG 0.592849 4:-76687607 MsG0480022791.01.T01:CDS
ATTACACAGTAATGACAAAG+TGG 0.593008 4:-76691368 MsG0480022791.01.T01:CDS
ACTGTTGCTTGCTGATGACA+AGG 0.595700 4:-76688301 MsG0480022791.01.T01:CDS
GAAGGTCACCTCCATATCCA+TGG 0.597313 4:+76688647 None:intergenic
GATTTGACCAGTCCATTAGG+TGG 0.602078 4:+76690421 None:intergenic
TGAAGAGAGCGGTGATTCGG+AGG 0.603835 4:-76691005 MsG0480022791.01.T01:CDS
TTTGACCAGTCCATTAGGTG+GGG 0.605201 4:+76690423 None:intergenic
TCTGATGCAACATCCTTAGG+AGG 0.610046 4:+76689467 None:intergenic
CATATGAAAAGAGCAGGATG+AGG 0.614560 4:-76690222 MsG0480022791.01.T01:intron
AGATGACTTCTTCATTGATG+AGG 0.615496 4:-76688430 MsG0480022791.01.T01:CDS
AACTCTTGTGAGTGAACATG+CGG 0.617686 4:+76691248 None:intergenic
TGGTTCTGGTATGAAGGAGA+AGG 0.619698 4:-76687611 MsG0480022791.01.T01:CDS
ATGCCGACGACGAACTCCGG+CGG 0.622468 4:+76691511 None:intergenic
AAGAAGAAGATGAAGAACAA+TGG 0.630023 4:-76691436 MsG0480022791.01.T01:CDS
ATTGATACGGATACTGATGA+TGG 0.633028 4:-76690944 MsG0480022791.01.T01:CDS
AGATGGAGATGATGATGCCA+TGG 0.633714 4:-76688664 MsG0480022791.01.T01:CDS
AAGCAGTGAAAACAACTCGC+CGG 0.639422 4:-76691541 MsG0480022791.01.T01:five_prime_UTR
TGATGAGAACGATTCTGAAG+AGG 0.644883 4:-76690918 MsG0480022791.01.T01:CDS
ACACCGCCGGAGTTCGTCGT+CGG 0.649037 4:-76691514 MsG0480022791.01.T01:five_prime_UTR
TGTTGCTTGCTGATGACAAG+GGG 0.651064 4:-76688299 MsG0480022791.01.T01:CDS
GTGTGAACCATGGCAAATCG+AGG 0.655246 4:+76691334 None:intergenic
CAGTTTGGGAAGAATATCTG+AGG 0.657281 4:-76688563 MsG0480022791.01.T01:CDS
TAAGCTCCAAGATATGGATG+GGG 0.662936 4:-76688352 MsG0480022791.01.T01:CDS
GAGTGATAGTGATGATAGTG+AGG 0.664566 4:-76688763 MsG0480022791.01.T01:CDS
CCTTCAACGTATGAATGAGG+AGG 0.665822 4:-76690371 MsG0480022791.01.T01:CDS
ACTCGCCGGAAACACACCGC+CGG 0.668521 4:-76691527 MsG0480022791.01.T01:five_prime_UTR
ACGTGGATCAGTGTGAACCA+TGG 0.669461 4:+76691324 None:intergenic
AGTGAGTAGATTGGACCACA+AGG 0.675512 4:+76687420 None:intergenic
TCTGCACCCGTCGATAAGCG+AGG 0.680086 4:-76691214 MsG0480022791.01.T01:CDS
TTTGGTGGTTCACGAAAACG+TGG 0.682242 4:+76691307 None:intergenic
CTGTTGCTTGCTGATGACAA+GGG 0.682674 4:-76688300 MsG0480022791.01.T01:CDS
TGATGATGCCATGGATATGG+AGG 0.684743 4:-76688655 MsG0480022791.01.T01:CDS
TATGGACTGGCGGTATGTGA+AGG 0.687556 4:-76690582 MsG0480022791.01.T01:intron
GGAACTGAGTCTGAAGAGAG+CGG 0.689169 4:-76691016 MsG0480022791.01.T01:CDS
ACCACCAAAGCATCAAACAA+AGG 0.695193 4:-76691293 MsG0480022791.01.T01:CDS
CTGTTGTTAATATGGACTGG+CGG 0.700073 4:-76690592 MsG0480022791.01.T01:CDS
TCATTACTATAAAATGGACG+AGG 0.707524 4:-76691149 MsG0480022791.01.T01:CDS
GAGAAGATAGATGCAAAACG+TGG 0.707824 4:+76688153 None:intergenic
ATAACAATGAGACTGATGAG+CGG 0.723456 4:-76688740 MsG0480022791.01.T01:CDS
TGCCGAGGCTTAGAACACAA+TGG 0.736491 4:+76687109 None:intergenic
GGGGCCGTAACAATTTCACA+AGG 0.738185 4:+76687384 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTCTTATTATTAGTAATATT+AGG - Chr4:76687918-76687937 MsG0480022791.01.T01:intron 10.0%
!!! AAATATTGAAAATTATTTCT+TGG - Chr4:76690749-76690768 MsG0480022791.01.T01:intron 10.0%
!!! ACAAAAATTAAATTTTAGAA+AGG + Chr4:76690967-76690986 None:intergenic 10.0%
!!! GTAAAATAATTTTAATTGAT+CGG - Chr4:76687965-76687984 MsG0480022791.01.T01:intron 10.0%
!! AAATGACTAAATAAAAAATG+AGG + Chr4:76689581-76689600 None:intergenic 15.0%
!! TAAAGAAATAGATATTGATA+CGG - Chr4:76687761-76687780 MsG0480022791.01.T01:intron 15.0%
!! TAATAATACTTAGAGTTTAA+CGG + Chr4:76688054-76688073 None:intergenic 15.0%
!! TTAGTAATATTAGGATTTAA+AGG - Chr4:76687927-76687946 MsG0480022791.01.T01:intron 15.0%
!! TTATAAATGTGAATACTATT+TGG + Chr4:76689604-76689623 None:intergenic 15.0%
!!! ATAAAATACCTTTTAAATTG+TGG + Chr4:76690619-76690638 None:intergenic 15.0%
!!! TAAGTGACATAATTTTAAAA+TGG + Chr4:76687894-76687913 None:intergenic 15.0%
!!! TACTTATTATCTTTTTTTCT+AGG + Chr4:76690004-76690023 None:intergenic 15.0%
!!! TATAATCTGAAGTTTAAAAA+AGG - Chr4:76690463-76690482 MsG0480022791.01.T01:intron 15.0%
!!! TATAGTTTATGCATTTTATT+TGG - Chr4:76687841-76687860 MsG0480022791.01.T01:intron 15.0%
!! AAAAAAAAACTTAAAGCTCT+GGG + Chr4:76689872-76689891 None:intergenic 20.0%
!! AATAATACTTAGAGTTTAAC+GGG + Chr4:76688053-76688072 None:intergenic 20.0%
!! AATTAACAAAAAACAAGTAC+AGG + Chr4:76689747-76689766 None:intergenic 20.0%
!! AGATATAAGCAAACATATTA+TGG - Chr4:76690108-76690127 MsG0480022791.01.T01:intron 20.0%
!! ATAAAAAATCAAGAACAGTT+TGG - Chr4:76690140-76690159 MsG0480022791.01.T01:intron 20.0%
!! ATATACAAGTTCTTGAATAA+CGG + Chr4:76690912-76690931 None:intergenic 20.0%
!! ATTCATATATAACTTCTCAT+AGG - Chr4:76691521-76691540 MsG0480022791.01.T01:five_prime_UTR 20.0%
!! CTCTAAGTATTATTATGATA+TGG - Chr4:76688059-76688078 MsG0480022791.01.T01:intron 20.0%
!! GAAAATCACAATTTAAGAAA+AGG - Chr4:76691259-76691278 MsG0480022791.01.T01:CDS 20.0%
!! TAAAAAATCAAGAACAGTTT+GGG - Chr4:76690141-76690160 MsG0480022791.01.T01:intron 20.0%
!! TGATATAATGAATGGTTAAA+GGG + Chr4:76688674-76688693 None:intergenic 20.0%
!! TTAAACCTTGATATAATGAA+TGG + Chr4:76688682-76688701 None:intergenic 20.0%
!! TTGATATAATGAATGGTTAA+AGG + Chr4:76688675-76688694 None:intergenic 20.0%
!! TTTAACCATTCATTATATCA+AGG - Chr4:76688674-76688693 MsG0480022791.01.T01:CDS 20.0%
!!! AATAATTTTAATTGATCGGT+TGG - Chr4:76687969-76687988 MsG0480022791.01.T01:intron 20.0%
!!! ATTTAATTTTTGTTGATTGC+AGG - Chr4:76690974-76690993 MsG0480022791.01.T01:CDS 20.0%
!!! GATTTAGCTAAGAAATTTTT+TGG + Chr4:76690799-76690818 None:intergenic 20.0%
!!! GTGTTGATAAATTTATATCT+TGG - Chr4:76689512-76689531 MsG0480022791.01.T01:CDS 20.0%
!!! TAAAAATTTTGTTGCAAACT+AGG - Chr4:76691474-76691493 MsG0480022791.01.T01:CDS 20.0%
! ACATCTGTACTAGTTATTAA+GGG + Chr4:76689722-76689741 None:intergenic 25.0%
! AGAACAAAGATTTCTATTCT+CGG - Chr4:76689368-76689387 MsG0480022791.01.T01:CDS 25.0%
! AGAGTTTACTACATGAAAAT+AGG + Chr4:76690936-76690955 None:intergenic 25.0%
! AGTATTATTATGATATGGAC+AGG - Chr4:76688064-76688083 MsG0480022791.01.T01:intron 25.0%
! ATAAACTATACCTGAATTTC+AGG + Chr4:76687831-76687850 None:intergenic 25.0%
! ATCATGAAAATCTTCTTCAT+CGG + Chr4:76688448-76688467 None:intergenic 25.0%
! ATTTATACAGAACTTCTCAT+TGG - Chr4:76691569-76691588 MsG0480022791.01.T01:five_prime_UTR 25.0%
! CAAACATATTATGGAAAAGA+AGG - Chr4:76690117-76690136 MsG0480022791.01.T01:intron 25.0%
! CACATTTACAAAGAAAATGA+TGG - Chr4:76689158-76689177 MsG0480022791.01.T01:intron 25.0%
! CATTACATAAAGAATATCAG+TGG + Chr4:76689802-76689821 None:intergenic 25.0%
! GAAAAAAAAACTTAAAGCTC+TGG + Chr4:76689873-76689892 None:intergenic 25.0%
! GAAATCAAAGCAAGATAAAT+TGG - Chr4:76691155-76691174 MsG0480022791.01.T01:CDS 25.0%
! GAGTTAGACAAGATAATATT+GGG + Chr4:76690827-76690846 None:intergenic 25.0%
! TAAATTGGAGTTATCATCTT+TGG - Chr4:76691170-76691189 MsG0480022791.01.T01:CDS 25.0%
! TACATCTGTACTAGTTATTA+AGG + Chr4:76689723-76689742 None:intergenic 25.0%
! TATACAAGTTCTTGAATAAC+GGG + Chr4:76690911-76690930 None:intergenic 25.0%
! TCTTCGTCATTACTATAAAA+TGG - Chr4:76687563-76687582 MsG0480022791.01.T01:CDS 25.0%
! TGAAGAATTATCAGTAGAAA+GGG - Chr4:76691044-76691063 MsG0480022791.01.T01:CDS 25.0%
! TGAGTTAGACAAGATAATAT+TGG + Chr4:76690828-76690847 None:intergenic 25.0%
! TTAATTGTTATGTATCTGTG+TGG - Chr4:76689761-76689780 MsG0480022791.01.T01:intron 25.0%
! TTCTTCTTCTTCTTAATATC+AGG + Chr4:76690316-76690335 None:intergenic 25.0%
! TTGTGATATATTTGCTTGAA+TGG - Chr4:76688544-76688563 MsG0480022791.01.T01:CDS 25.0%
! TTTATATATATGCTGTATCG+TGG - Chr4:76689285-76689304 MsG0480022791.01.T01:CDS 25.0%
!! AAAATTATTTCTTGGCATGA+TGG - Chr4:76690757-76690776 MsG0480022791.01.T01:intron 25.0%
!! AGATTCAAGTTAGAAAAACA+TGG + Chr4:76689076-76689095 None:intergenic 25.0%
!! ATACCTTTTAAATTGTGGAT+CGG + Chr4:76690614-76690633 None:intergenic 25.0%
!! ATCAGCGTGTAAAATATTTT+CGG + Chr4:76688723-76688742 None:intergenic 25.0%
!! ATCGTGGATTATAATAGAAT+AGG - Chr4:76689301-76689320 MsG0480022791.01.T01:CDS 25.0%
!! TTTTTACACTGACATCTAAT+AGG + Chr4:76688014-76688033 None:intergenic 25.0%
!!! ATTTGTTATGTTGCTAAGAT+TGG - Chr4:76690856-76690875 MsG0480022791.01.T01:intron 25.0%
!!! TCTTTGTCATTTTTACTTTC+TGG + Chr4:76690343-76690362 None:intergenic 25.0%
!!! TTTGTGTTTGTTGTGTTTTT+TGG - Chr4:76688232-76688251 MsG0480022791.01.T01:CDS 25.0%
AAGAAGAAGATGAAGAACAA+TGG - Chr4:76687282-76687301 MsG0480022791.01.T01:three_prime_UTR 30.0%
AATATGAGTGACATGTGATA+CGG + Chr4:76688998-76689017 None:intergenic 30.0%
ACAGTAAAGTTGAACTTACT+TGG - Chr4:76689401-76689420 MsG0480022791.01.T01:intron 30.0%
ACTTTGTCATTACTGTGTAA+TGG + Chr4:76687351-76687370 None:intergenic 30.0%
AGATTGAGAAAGAAACTCAT+AGG - Chr4:76688099-76688118 MsG0480022791.01.T01:intron 30.0%
ATCTGAATTATTGTCAAGCA+AGG + Chr4:76690032-76690051 None:intergenic 30.0%
ATTACACAGTAATGACAAAG+TGG - Chr4:76687350-76687369 MsG0480022791.01.T01:three_prime_UTR 30.0%
ATTCTAGATCATAAGAAAGG+AGG + Chr4:76688871-76688890 None:intergenic 30.0%
CAGTAAAGTTGAACTTACTT+GGG - Chr4:76689402-76689421 MsG0480022791.01.T01:intron 30.0%
CATATATAACTTCTCATAGG+TGG - Chr4:76691524-76691543 MsG0480022791.01.T01:five_prime_UTR 30.0%
CTGAAGTTTAAAAAAGGCAA+GGG - Chr4:76690469-76690488 MsG0480022791.01.T01:intron 30.0%
GAACAAAGATTTCTATTCTC+GGG - Chr4:76689369-76689388 MsG0480022791.01.T01:CDS 30.0%
GACAATAATTCAGATGAAGA+TGG - Chr4:76690037-76690056 MsG0480022791.01.T01:intron 30.0%
GTGAAGAATTATCAGTAGAA+AGG - Chr4:76691043-76691062 MsG0480022791.01.T01:CDS 30.0%
GTTATTAAGGGACAAAAGAA+TGG + Chr4:76689710-76689729 None:intergenic 30.0%
TATCTTGGAAAAATCTTGTG+TGG - Chr4:76689527-76689546 MsG0480022791.01.T01:CDS 30.0%
TCAAGCAAATATATCACAAC+AGG + Chr4:76688543-76688562 None:intergenic 30.0%
TCATTACTATAAAATGGACG+AGG - Chr4:76687569-76687588 MsG0480022791.01.T01:CDS 30.0%
TTATGTTGCTAAGATTGGAA+TGG - Chr4:76690861-76690880 MsG0480022791.01.T01:intron 30.0%
TTTATCAGACTTCTTCGAAT+TGG + Chr4:76687328-76687347 None:intergenic 30.0%
TTTATGGAGATTATACTTCC+CGG - Chr4:76688934-76688953 MsG0480022791.01.T01:intron 30.0%
! AAACACAATTGACTCACATT+AGG + Chr4:76688175-76688194 None:intergenic 30.0%
! AAATTTTGTTGCAAACTAGG+TGG - Chr4:76691477-76691496 MsG0480022791.01.T01:CDS 30.0%
! ATAACGGGAAGTACAATTAT+AGG + Chr4:76690896-76690915 None:intergenic 30.0%
! GGATAATGATGATGAATTAG+AGG - Chr4:76687638-76687657 MsG0480022791.01.T01:CDS 30.0%
! TAACGGGAAGTACAATTATA+GGG + Chr4:76690895-76690914 None:intergenic 30.0%
! TATCAAATTTTATGCTGCGA+TGG - Chr4:76689627-76689646 MsG0480022791.01.T01:intron 30.0%
! TCTGAAGTTTAAAAAAGGCA+AGG - Chr4:76690468-76690487 MsG0480022791.01.T01:intron 30.0%
! TGGAGTTCAAAGATTTTGTT+TGG - Chr4:76688198-76688217 MsG0480022791.01.T01:CDS 30.0%
! TTCAAGTTAGAAAAACATGG+TGG + Chr4:76689073-76689092 None:intergenic 30.0%
! TTTCTTTGTATTGACATCAG+AGG + Chr4:76691235-76691254 None:intergenic 30.0%
! TTTTCAACTTGAATCAAGCA+TGG - Chr4:76688599-76688618 MsG0480022791.01.T01:CDS 30.0%
!! ATTTAAGAAAAGGAAGCACT+AGG - Chr4:76691269-76691288 MsG0480022791.01.T01:CDS 30.0%
!!! ATGCTTTGATTTGTTTTTCC+TGG + Chr4:76690203-76690222 None:intergenic 30.0%
!!! GTTCTTCTTGTTTTCCTTTT+TGG + Chr4:76687244-76687263 None:intergenic 30.0%
!!! TGTCATTACGCTTTGTTTTA+TGG - Chr4:76688918-76688937 MsG0480022791.01.T01:intron 30.0%
!!! TTGTTGTGTTTTTTGGTTGT+AGG - Chr4:76688239-76688258 MsG0480022791.01.T01:CDS 30.0%
AAAAAAGGCAAGGGCAAAAA+AGG - Chr4:76690478-76690497 MsG0480022791.01.T01:intron 35.0%
AAAATGAGGTAACTACTCAG+AGG + Chr4:76689567-76689586 None:intergenic 35.0%
AAGGTTTATTCCAGACGATA+TGG - Chr4:76689217-76689236 MsG0480022791.01.T01:intron 35.0%
ACTACTATTTCACTCTGATG+GGG - Chr4:76690705-76690724 MsG0480022791.01.T01:intron 35.0%
ACTATTTATCCAACCGAGTT+TGG - Chr4:76688324-76688343 MsG0480022791.01.T01:CDS 35.0%
AGATCATAAGCTCCAAGATA+TGG - Chr4:76690360-76690379 MsG0480022791.01.T01:CDS 35.0%
AGATGACTTCTTCATTGATG+AGG - Chr4:76690288-76690307 MsG0480022791.01.T01:CDS 35.0%
ATAACAATGAGACTGATGAG+CGG - Chr4:76689978-76689997 MsG0480022791.01.T01:intron 35.0%
ATAAGCTCCAAGATATGGAT+GGG - Chr4:76690365-76690384 MsG0480022791.01.T01:CDS 35.0%
ATATGAGTGACATGTGATAC+GGG + Chr4:76688997-76689016 None:intergenic 35.0%
ATCTGTGTGGTAGAAGAAAT+TGG - Chr4:76689774-76689793 MsG0480022791.01.T01:intron 35.0%
ATCTTGCAAACCTGTATTGA+AGG + Chr4:76690092-76690111 None:intergenic 35.0%
ATGAATGAGGAGGAAGTTAA+AGG - Chr4:76688357-76688376 MsG0480022791.01.T01:CDS 35.0%
ATTATGATATGGACAGGAAG+AGG - Chr4:76688070-76688089 MsG0480022791.01.T01:intron 35.0%
ATTGATACGGATACTGATGA+TGG - Chr4:76687774-76687793 MsG0480022791.01.T01:intron 35.0%
CACTACTATTTCACTCTGAT+GGG - Chr4:76690704-76690723 MsG0480022791.01.T01:intron 35.0%
CGCATTCTAGATCATAAGAA+AGG + Chr4:76688874-76688893 None:intergenic 35.0%
GAAAGGAGGATAACAAAGAT+AGG + Chr4:76688857-76688876 None:intergenic 35.0%
GAAAGTTAAGAATGCGAAAC+CGG - Chr4:76687668-76687687 MsG0480022791.01.T01:CDS 35.0%
GAATCTTTATCTTGCTCTCT+AGG - Chr4:76689090-76689109 MsG0480022791.01.T01:intron 35.0%
GAGACCTTGTGAAATTGTTA+CGG - Chr4:76691330-76691349 MsG0480022791.01.T01:CDS 35.0%
GATGTCAATACAAAGAAAGC+TGG - Chr4:76691237-76691256 MsG0480022791.01.T01:CDS 35.0%
GCACGTCAAAATAGTAAACA+TGG + Chr4:76689030-76689049 None:intergenic 35.0%
GGAATAAACCTTAAGTCAAG+TGG + Chr4:76689209-76689228 None:intergenic 35.0%
GGATCATCAAATGCATTGTT+TGG + Chr4:76690547-76690566 None:intergenic 35.0%
GTGAGTCAATTGTGTTTATC+TGG - Chr4:76688178-76688197 MsG0480022791.01.T01:CDS 35.0%
TAGAAAAACATGGTGGTAAG+AGG + Chr4:76689066-76689085 None:intergenic 35.0%
TCACTACTATTTCACTCTGA+TGG - Chr4:76690703-76690722 MsG0480022791.01.T01:intron 35.0%
TCAGTTCCATTATCAATCTC+CGG + Chr4:76687690-76687709 None:intergenic 35.0%
TCTGTGTGGTAGAAGAAATT+GGG - Chr4:76689775-76689794 MsG0480022791.01.T01:intron 35.0%
TGAATGAGGAGGAAGTTAAA+GGG - Chr4:76688358-76688377 MsG0480022791.01.T01:CDS 35.0%
TGTTTGAATTCCATATCGTC+TGG + Chr4:76689230-76689249 None:intergenic 35.0%
TTCCATTCAAGTGAGTAGAT+TGG + Chr4:76691310-76691329 None:intergenic 35.0%
TTCCTTTCTATTGTGATAGC+TGG - Chr4:76689895-76689914 MsG0480022791.01.T01:intron 35.0%
TTGACATATCAGCGTGTAAA+TGG + Chr4:76688792-76688811 None:intergenic 35.0%
TTTGTAAATGTGATCTGCTG+TGG + Chr4:76689150-76689169 None:intergenic 35.0%
! CTCTAGGTACTATTTTGCTT+TGG - Chr4:76689106-76689125 MsG0480022791.01.T01:intron 35.0%
! CTTTTAAATTGTGGATCGGT+GGG + Chr4:76690610-76690629 None:intergenic 35.0%
! TAGGTACTATTTTGCTTTGG+TGG - Chr4:76689109-76689128 MsG0480022791.01.T01:intron 35.0%
! TTCAAAGTATTTGCTCGAAG+AGG + Chr4:76689439-76689458 None:intergenic 35.0%
! TTCGAGCAAATACTTTGAAG+CGG - Chr4:76689440-76689459 MsG0480022791.01.T01:intron 35.0%
!! ATCTTGTGTGGTGTTAGTTT+TGG - Chr4:76689539-76689558 MsG0480022791.01.T01:CDS 35.0%
!! TGCGAATTAGCCTTATCTTT+GGG + Chr4:76687534-76687553 None:intergenic 35.0%
!! TGCTGAAGTTTGTGGTTTTA+GGG + Chr4:76687126-76687145 None:intergenic 35.0%
AACATGGTGGTAAGAGGAAA+AGG + Chr4:76689060-76689079 None:intergenic 40.0%
AACGTGAGAAAAAGAAAGCC+AGG - Chr4:76690182-76690201 MsG0480022791.01.T01:intron 40.0%
AACTCTTGTGAGTGAACATG+CGG + Chr4:76687473-76687492 None:intergenic 40.0%
AAGCTCTTCTTTGCTTGCTT+TGG + Chr4:76690395-76690414 None:intergenic 40.0%
AAGTGATGAAGACGATAGTG+AGG - Chr4:76688413-76688432 MsG0480022791.01.T01:CDS 40.0%
ACACGCTGATATTGTCAAGT+GGG - Chr4:76688733-76688752 MsG0480022791.01.T01:CDS 40.0%
ACATGGTGGTAAGAGGAAAA+GGG + Chr4:76689059-76689078 None:intergenic 40.0%
ACTGCTTGTTTCAGAGAGAA+CGG + Chr4:76687164-76687183 None:intergenic 40.0%
AGAGGATGAACCTGAAATTC+AGG - Chr4:76687818-76687837 MsG0480022791.01.T01:intron 40.0%
AGCCAGCTATCACAATAGAA+AGG + Chr4:76689900-76689919 None:intergenic 40.0%
AGGCTTAGAACACAATGGTT+AGG + Chr4:76691607-76691626 None:intergenic 40.0%
AGTAGAACAGAGTAGTGATG+AGG - Chr4:76687614-76687633 MsG0480022791.01.T01:CDS 40.0%
AGTTGAACTTACTTGGGATG+AGG - Chr4:76689408-76689427 MsG0480022791.01.T01:intron 40.0%
ATTATACTTCCCGGAACACA+TGG - Chr4:76688943-76688962 MsG0480022791.01.T01:intron 40.0%
ATTTGACCAGTCCATTAGGT+GGG + Chr4:76688299-76688318 None:intergenic 40.0%
CAAAAAAGGCAAGGGCAAAA+AGG - Chr4:76690492-76690511 MsG0480022791.01.T01:intron 40.0%
CAAAGATAAGGCTAATTCGC+AGG - Chr4:76687533-76687552 MsG0480022791.01.T01:CDS 40.0%
CAGTTTGGGAAGAATATCTG+AGG - Chr4:76690155-76690174 MsG0480022791.01.T01:intron 40.0%
CATAAGCTCCAAGATATGGA+TGG - Chr4:76690364-76690383 MsG0480022791.01.T01:CDS 40.0%
CATATGAAAAGAGCAGGATG+AGG - Chr4:76688496-76688515 MsG0480022791.01.T01:CDS 40.0%
CATCGAATCCACTTGACTTA+AGG - Chr4:76689198-76689217 MsG0480022791.01.T01:intron 40.0%
CCACCGATCCACAATTTAAA+AGG - Chr4:76690608-76690627 MsG0480022791.01.T01:CDS 40.0%
GAGAAGATAGATGCAAAACG+TGG + Chr4:76690568-76690587 None:intergenic 40.0%
GGAGGATAACAAAGATAGGA+AGG + Chr4:76688853-76688872 None:intergenic 40.0%
GTATATGTATGTGCATGGCA+TGG + Chr4:76689672-76689691 None:intergenic 40.0%
GTCCAATCTACTCACTTGAA+TGG - Chr4:76691305-76691324 MsG0480022791.01.T01:CDS 40.0%
TAAGCTCCAAGATATGGATG+GGG - Chr4:76690366-76690385 MsG0480022791.01.T01:CDS 40.0%
TACACGCTGATATGTCAAGT+GGG - Chr4:76688794-76688813 MsG0480022791.01.T01:CDS 40.0%
TACACGCTGATATTGTCAAG+TGG - Chr4:76688732-76688751 MsG0480022791.01.T01:CDS 40.0%
TATTGACATCAGAGGATAGC+TGG + Chr4:76691227-76691246 None:intergenic 40.0%
TCACCATCAAATAGAGCAAC+AGG + Chr4:76688384-76688403 None:intergenic 40.0%
TCACTATTTCCCATGTGTTC+CGG + Chr4:76688956-76688975 None:intergenic 40.0%
TGAGAAAGAAACTCATAGGC+TGG - Chr4:76688103-76688122 MsG0480022791.01.T01:intron 40.0%
TGAGCGTATATGTATGTGCA+TGG + Chr4:76689677-76689696 None:intergenic 40.0%
TGGCTGTTGTTAATATGGAC+TGG - Chr4:76688123-76688142 MsG0480022791.01.T01:CDS 40.0%
TTACACGCTGATATGTCAAG+TGG - Chr4:76688793-76688812 MsG0480022791.01.T01:CDS 40.0%
TTATACTTCCCGGAACACAT+GGG - Chr4:76688944-76688963 MsG0480022791.01.T01:intron 40.0%
! AACCATTGTGTTCTAAGCCT+CGG - Chr4:76691607-76691626 MsG0480022791.01.T01:five_prime_UTR 40.0%
! ACCACCAAAGCATCAAACAA+AGG - Chr4:76687425-76687444 MsG0480022791.01.T01:three_prime_UTR 40.0%
! ACCTTTGTTTGATGCTTTGG+TGG + Chr4:76687429-76687448 None:intergenic 40.0%
! AGATGATGATGCCATGGATA+TGG - Chr4:76690060-76690079 MsG0480022791.01.T01:intron 40.0%
! CCTTTTAAATTGTGGATCGG+TGG + Chr4:76690611-76690630 None:intergenic 40.0%
! CTGCTGAAGTTTGTGGTTTT+AGG + Chr4:76687127-76687146 None:intergenic 40.0%
! GAGTGATAGTGATGATAGTG+AGG - Chr4:76689955-76689974 MsG0480022791.01.T01:intron 40.0%
! GCAACCTTTGTTTGATGCTT+TGG + Chr4:76687432-76687451 None:intergenic 40.0%
! GGTTGGTATTGGATCTATTG+AGG - Chr4:76691401-76691420 MsG0480022791.01.T01:CDS 40.0%
! TAGGCTGGCTGTTGTTAATA+TGG - Chr4:76688118-76688137 MsG0480022791.01.T01:CDS 40.0%
! TCTTTGTTCTCGTAGTTTGC+AGG + Chr4:76689358-76689377 None:intergenic 40.0%
! TGATCTAGAATGCGTCTATG+TGG - Chr4:76688880-76688899 MsG0480022791.01.T01:intron 40.0%
! TGATGAGAACGATTCTGAAG+AGG - Chr4:76687800-76687819 MsG0480022791.01.T01:intron 40.0%
!! ACCTAATGGACTGGTCAAAT+CGG - Chr4:76688299-76688318 MsG0480022791.01.T01:CDS 40.0%
!! AGCACTAGGTTTTAACCTTG+TGG - Chr4:76691283-76691302 MsG0480022791.01.T01:CDS 40.0%
!! CTGCGAATTAGCCTTATCTT+TGG + Chr4:76687535-76687554 None:intergenic 40.0%
!! CTGTTGTTAATATGGACTGG+CGG - Chr4:76688126-76688145 MsG0480022791.01.T01:CDS 40.0%
!! TTCTGATGGTTCTGGTATGA+AGG - Chr4:76691101-76691120 MsG0480022791.01.T01:CDS 40.0%
!!! TGTTTTTTGGTTGTAGGCTG+TGG - Chr4:76688245-76688264 MsG0480022791.01.T01:CDS 40.0%
AAAAGGCAAGGGCAAAAAGG+CGG - Chr4:76690495-76690514 MsG0480022791.01.T01:intron 45.0%
AAATCGCTGGGGTAAAAAGC+AGG - Chr4:76691373-76691392 MsG0480022791.01.T01:CDS 45.0%
AAGAACCACGACGACAACAA+AGG - Chr4:76687258-76687277 MsG0480022791.01.T01:three_prime_UTR 45.0%
AAGCAGTGAAAACAACTCGC+CGG - Chr4:76687177-76687196 MsG0480022791.01.T01:three_prime_UTR 45.0%
ACCTCTGATGCAACATCCTT+AGG + Chr4:76689257-76689276 None:intergenic 45.0%
AGAACAGAGTAGTGATGAGG+AGG - Chr4:76687617-76687636 MsG0480022791.01.T01:CDS 45.0%
AGAACCACGACGACAACAAA+GGG - Chr4:76687259-76687278 MsG0480022791.01.T01:three_prime_UTR 45.0%
AGTGAGTAGATTGGACCACA+AGG + Chr4:76691301-76691320 None:intergenic 45.0%
AGTTCATTAGCCCCACCTAA+TGG - Chr4:76688285-76688304 MsG0480022791.01.T01:CDS 45.0%
ATGGAGGTGACCTTCAATAC+AGG - Chr4:76690079-76690098 MsG0480022791.01.T01:intron 45.0%
CACTATTTCCCATGTGTTCC+GGG + Chr4:76688955-76688974 None:intergenic 45.0%
CACTCTGATGGGGTAAACTT+GGG - Chr4:76690715-76690734 MsG0480022791.01.T01:intron 45.0%
CATACGTTGAAGGCCAAACT+CGG + Chr4:76688340-76688359 None:intergenic 45.0%
CATCGCAATGGGATCCAAAA+AGG - Chr4:76687227-76687246 MsG0480022791.01.T01:three_prime_UTR 45.0%
CCTCCTCATTCATACGTTGA+AGG + Chr4:76688350-76688369 None:intergenic 45.0%
CCTTCAACGTATGAATGAGG+AGG - Chr4:76688347-76688366 MsG0480022791.01.T01:CDS 45.0%
GAAGAACAATGGCAAGCGTA+AGG - Chr4:76687293-76687312 MsG0480022791.01.T01:three_prime_UTR 45.0%
GATTTGACCAGTCCATTAGG+TGG + Chr4:76688300-76688319 None:intergenic 45.0%
GCATGATGGTTACATTCAGC+TGG - Chr4:76690771-76690790 MsG0480022791.01.T01:intron 45.0%
GCGAAACCGGAGATTGATAA+TGG - Chr4:76687681-76687700 MsG0480022791.01.T01:CDS 45.0%
GCGAGGTAAACCCAAAGATA+AGG - Chr4:76687521-76687540 MsG0480022791.01.T01:CDS 45.0%
GGAATTCAAACAGCCTCCTA+AGG - Chr4:76689238-76689257 MsG0480022791.01.T01:intron 45.0%
GGTAAGAGGAAAAGGGAGAT+GGG + Chr4:76689052-76689071 None:intergenic 45.0%
GTAAAAAGCAGGCATGTGGT+TGG - Chr4:76691384-76691403 MsG0480022791.01.T01:CDS 45.0%
TCACTCTGATGGGGTAAACT+TGG - Chr4:76690714-76690733 MsG0480022791.01.T01:intron 45.0%
TCCTAAGGATGTTGCATCAG+AGG - Chr4:76689253-76689272 MsG0480022791.01.T01:intron 45.0%
TCTGATGCAACATCCTTAGG+AGG + Chr4:76689254-76689273 None:intergenic 45.0%
TGCGTGCATATGAAAAGAGC+AGG - Chr4:76688490-76688509 MsG0480022791.01.T01:CDS 45.0%
TGGCCTTCAACGTATGAATG+AGG - Chr4:76688344-76688363 MsG0480022791.01.T01:CDS 45.0%
TGGTAAGAGGAAAAGGGAGA+TGG + Chr4:76689053-76689072 None:intergenic 45.0%
TGTTTCAGAGAGAACGGCAA+AGG + Chr4:76687158-76687177 None:intergenic 45.0%
TTTGACCAGTCCATTAGGTG+GGG + Chr4:76688298-76688317 None:intergenic 45.0%
! ACTGTTGCTTGCTGATGACA+AGG - Chr4:76690417-76690436 MsG0480022791.01.T01:CDS 45.0%
! AGATGGAGATGATGATGCCA+TGG - Chr4:76690054-76690073 MsG0480022791.01.T01:intron 45.0%
! ATAGCTGGCTCAGTTGGAAA+TGG - Chr4:76689910-76689929 MsG0480022791.01.T01:intron 45.0%
! ATTGTGATAGCTGGCTCAGT+TGG - Chr4:76689904-76689923 MsG0480022791.01.T01:intron 45.0%
! ATTTTTGCCGGCATGTGGAA+GGG + Chr4:76691357-76691376 None:intergenic 45.0%
! CGGAGAATGCTTTTGATGAG+GGG - Chr4:76690515-76690534 MsG0480022791.01.T01:intron 45.0%
! CTGTTGCTTGCTGATGACAA+GGG - Chr4:76690418-76690437 MsG0480022791.01.T01:CDS 45.0%
! GCGGAGAATGCTTTTGATGA+GGG - Chr4:76690514-76690533 MsG0480022791.01.T01:intron 45.0%
! GGTTCTGGTATGAAGGAGAA+GGG - Chr4:76691108-76691127 MsG0480022791.01.T01:CDS 45.0%
! TGATGATGCCATGGATATGG+AGG - Chr4:76690063-76690082 MsG0480022791.01.T01:intron 45.0%
! TGTTGCTTGCTGATGACAAG+GGG - Chr4:76690419-76690438 MsG0480022791.01.T01:CDS 45.0%
! TTTACCCCAGCGATTTTTGC+CGG + Chr4:76691369-76691388 None:intergenic 45.0%
! TTTGGTGGTTCACGAAAACG+TGG + Chr4:76687414-76687433 None:intergenic 45.0%
!! ACCGATTTGACCAGTCCATT+AGG + Chr4:76688303-76688322 None:intergenic 45.0%
!! TGGTTCTGGTATGAAGGAGA+AGG - Chr4:76691107-76691126 MsG0480022791.01.T01:CDS 45.0%
ACATGCCGGCAAAAATCGCT+GGG - Chr4:76691361-76691380 MsG0480022791.01.T01:CDS 50.0%
ACGTGGATCAGTGTGAACCA+TGG + Chr4:76687397-76687416 None:intergenic 50.0%
AGAGAGAACGGCAAAGGTGA+AGG + Chr4:76687152-76687171 None:intergenic 50.0%
AGGCAAGGGCAAAAAAGGCA+AGG - Chr4:76690483-76690502 MsG0480022791.01.T01:intron 50.0%
CTGGTATGAAGGAGAAGGGT+GGG - Chr4:76691112-76691131 MsG0480022791.01.T01:CDS 50.0%
GAAGGAGCTGCTGAAGTTTG+TGG + Chr4:76687134-76687153 None:intergenic 50.0%
GAAGGTCACCTCCATATCCA+TGG + Chr4:76690074-76690093 None:intergenic 50.0%
GGAACTGAGTCTGAAGAGAG+CGG - Chr4:76687702-76687721 MsG0480022791.01.T01:CDS 50.0%
GGCAAGGGCAAAAAAGGCAA+GGG - Chr4:76690484-76690503 MsG0480022791.01.T01:intron 50.0%
GGGCCTGTTGCTCTATTTGA+TGG - Chr4:76688378-76688397 MsG0480022791.01.T01:CDS 50.0%
GGGGCCGTAACAATTTCACA+AGG + Chr4:76691337-76691356 None:intergenic 50.0%
GGGTTTACCTCGCTTATCGA+CGG + Chr4:76687514-76687533 None:intergenic 50.0%
GGTTTACCTCGCTTATCGAC+GGG + Chr4:76687513-76687532 None:intergenic 50.0%
GTCTGAAGAGAGCGGTGATT+CGG - Chr4:76687710-76687729 MsG0480022791.01.T01:CDS 50.0%
GTGTGAACCATGGCAAATCG+AGG + Chr4:76687387-76687406 None:intergenic 50.0%
TCTGGTATGAAGGAGAAGGG+TGG - Chr4:76691111-76691130 MsG0480022791.01.T01:CDS 50.0%
TGCCGAGGCTTAGAACACAA+TGG + Chr4:76691612-76691631 None:intergenic 50.0%
TGGCTACCCCATCCATATCT+TGG + Chr4:76690375-76690394 None:intergenic 50.0%
TGGGGTAAAAAGCAGGCATG+TGG - Chr4:76691380-76691399 MsG0480022791.01.T01:CDS 50.0%
TGGTATGAAGGAGAAGGGTG+GGG - Chr4:76691113-76691132 MsG0480022791.01.T01:CDS 50.0%
TTATCGACGGGTGCAGAAGA+AGG + Chr4:76687501-76687520 None:intergenic 50.0%
! AGCAGGCATGTGGTTGGTAT+TGG - Chr4:76691390-76691409 MsG0480022791.01.T01:CDS 50.0%
! ATTAGCCCCACCTAATGGAC+TGG - Chr4:76688290-76688309 MsG0480022791.01.T01:CDS 50.0%
! CGAAGATCCTCGATTTGCCA+TGG - Chr4:76687377-76687396 MsG0480022791.01.T01:three_prime_UTR 50.0%
! GATTTTTGCCGGCATGTGGA+AGG + Chr4:76691358-76691377 None:intergenic 50.0%
! GGCGGAGAATGCTTTTGATG+AGG - Chr4:76690513-76690532 MsG0480022791.01.T01:intron 50.0%
! TCTTCCCTTTGTTGTCGTCG+TGG + Chr4:76687266-76687285 None:intergenic 50.0%
! TGATTCGGAGGCTGATGCTA+TGG - Chr4:76687725-76687744 MsG0480022791.01.T01:CDS 50.0%
! TTTTTGCCGGCATGTGGAAG+GGG + Chr4:76691356-76691375 None:intergenic 50.0%
!! CGGTTGGTCTCTTAACTCGA+TGG - Chr4:76687985-76688004 MsG0480022791.01.T01:intron 50.0%
!! TATGGACTGGCGGTATGTGA+AGG - Chr4:76688136-76688155 MsG0480022791.01.T01:CDS 50.0%
AAGGAGAAGGGTGGGGAAGA+AGG - Chr4:76691120-76691139 MsG0480022791.01.T01:CDS 55.0%
AGGAGAAGGGTGGGGAAGAA+GGG - Chr4:76691121-76691140 MsG0480022791.01.T01:CDS 55.0%
CACATGCCGGCAAAAATCGC+TGG - Chr4:76691360-76691379 MsG0480022791.01.T01:CDS 55.0%
CATGCCGGCAAAAATCGCTG+GGG - Chr4:76691362-76691381 MsG0480022791.01.T01:CDS 55.0%
CGTTGAAGGCCAAACTCGGT+TGG + Chr4:76688336-76688355 None:intergenic 55.0%
CTGGCACAGAAGCAGCAGAA+GGG - Chr4:76691018-76691037 MsG0480022791.01.T01:CDS 55.0%
CTTGCTGATGACAAGGGGAC+AGG - Chr4:76690424-76690443 MsG0480022791.01.T01:CDS 55.0%
GATGACAAGGGGACAGGTAC+TGG - Chr4:76690430-76690449 MsG0480022791.01.T01:CDS 55.0%
GCGGAAATTCACTGACGAGC+AGG - Chr4:76689459-76689478 MsG0480022791.01.T01:intron 55.0%
TTCGTCGTCGGCATCGCAAT+GGG - Chr4:76687216-76687235 MsG0480022791.01.T01:three_prime_UTR 55.0%
! CAGCGATTTTTGCCGGCATG+TGG + Chr4:76691362-76691381 None:intergenic 55.0%
! TGAAGAGAGCGGTGATTCGG+AGG - Chr4:76687713-76687732 MsG0480022791.01.T01:CDS 55.0%
!! GGGACAGGTACTGGTCTCAA+GGG - Chr4:76690439-76690458 MsG0480022791.01.T01:CDS 55.0%
GAACTCCGGCGGTGTGTTTC+CGG + Chr4:76687199-76687218 None:intergenic 60.0%
GCTGGCACAGAAGCAGCAGA+AGG - Chr4:76691017-76691036 MsG0480022791.01.T01:CDS 60.0%
GTTCGTCGTCGGCATCGCAA+TGG - Chr4:76687215-76687234 MsG0480022791.01.T01:three_prime_UTR 60.0%
TCTGCACCCGTCGATAAGCG+AGG - Chr4:76687504-76687523 MsG0480022791.01.T01:CDS 60.0%
TGCCAGCTGCCTGGCATACA+CGG + Chr4:76691004-76691023 None:intergenic 60.0%
TTACGGCCCCTTCCACATGC+CGG - Chr4:76691347-76691366 MsG0480022791.01.T01:CDS 60.0%
!! GGGGACAGGTACTGGTCTCA+AGG - Chr4:76690438-76690457 MsG0480022791.01.T01:CDS 60.0%
ACACCGCCGGAGTTCGTCGT+CGG - Chr4:76687204-76687223 MsG0480022791.01.T01:three_prime_UTR 65.0%
ACTCGCCGGAAACACACCGC+CGG - Chr4:76687191-76687210 MsG0480022791.01.T01:three_prime_UTR 65.0%
ATGCCGACGACGAACTCCGG+CGG + Chr4:76687210-76687229 None:intergenic 65.0%
CTGCTTCTGTGCCAGCTGCC+TGG + Chr4:76691013-76691032 None:intergenic 65.0%
GCGATGCCGACGACGAACTC+CGG + Chr4:76687213-76687232 None:intergenic 65.0%
CGCCGTGTATGCCAGGCAGC+TGG - Chr4:76690999-76691018 MsG0480022791.01.T01:CDS 70.0%
!! GCAGGAGCGCCGTGTATGCC+AGG - Chr4:76690992-76691011 MsG0480022791.01.T01:CDS 70.0%
Chromosome Type Strat End Strand Name
Chr4 gene 76687098 76691642 76687098 ID=MsG0480022791.01;Name=MsG0480022791.01
Chr4 mRNA 76687098 76691642 76687098 ID=MsG0480022791.01.T01;Parent=MsG0480022791.01;Name=MsG0480022791.01.T01;_AED=0.20;_eAED=0.20;_QI=136|1|1|1|1|1|7|352|745
Chr4 exon 76687098 76687744 76687098 ID=MsG0480022791.01.T01:exon:10964;Parent=MsG0480022791.01.T01
Chr4 exon 76688111 76688826 76688111 ID=MsG0480022791.01.T01:exon:10963;Parent=MsG0480022791.01.T01
Chr4 exon 76689260 76689388 76689260 ID=MsG0480022791.01.T01:exon:10962;Parent=MsG0480022791.01.T01
Chr4 exon 76689466 76689628 76689466 ID=MsG0480022791.01.T01:exon:10961;Parent=MsG0480022791.01.T01
Chr4 exon 76690223 76690479 76690223 ID=MsG0480022791.01.T01:exon:10960;Parent=MsG0480022791.01.T01
Chr4 exon 76690583 76690654 76690583 ID=MsG0480022791.01.T01:exon:10959;Parent=MsG0480022791.01.T01
Chr4 exon 76690901 76691642 76690901 ID=MsG0480022791.01.T01:exon:10958;Parent=MsG0480022791.01.T01
Chr4 five_prime_UTR 76691507 76691642 76691507 ID=MsG0480022791.01.T01:five_prime_utr;Parent=MsG0480022791.01.T01
Chr4 CDS 76690901 76691506 76690901 ID=MsG0480022791.01.T01:cds;Parent=MsG0480022791.01.T01
Chr4 CDS 76690583 76690654 76690583 ID=MsG0480022791.01.T01:cds;Parent=MsG0480022791.01.T01
Chr4 CDS 76690223 76690479 76690223 ID=MsG0480022791.01.T01:cds;Parent=MsG0480022791.01.T01
Chr4 CDS 76689466 76689628 76689466 ID=MsG0480022791.01.T01:cds;Parent=MsG0480022791.01.T01
Chr4 CDS 76689260 76689388 76689260 ID=MsG0480022791.01.T01:cds;Parent=MsG0480022791.01.T01
Chr4 CDS 76688111 76688826 76688111 ID=MsG0480022791.01.T01:cds;Parent=MsG0480022791.01.T01
Chr4 CDS 76687450 76687744 76687450 ID=MsG0480022791.01.T01:cds;Parent=MsG0480022791.01.T01
Chr4 three_prime_UTR 76687098 76687449 76687098 ID=MsG0480022791.01.T01:three_prime_utr;Parent=MsG0480022791.01.T01
Gene Sequence

>MsG0480022791.01.T01

ATGGGATCCAAAAAGGAAAACAAGAAGAACCACGACGACAACAAAGGGAAGAAGAAGATGAAGAACAATGGCAAGCGTAAGGATTCTTCGTCCAATTCGAAGAAGTCTGATAAACCATTACACAGTAATGACAAAGTGGTTATCGAAGATCCTCGATTTGCCATGGTTCACACTGATCCACGTTTTCGTGAACCACCAAAGCATCAAACAAAGGTTGCGATTGATTCTCGATTCGACCGCATGTTCACTCACAAGAGTTTTTTGCCTTCTTCTGCACCCGTCGATAAGCGAGGTAAACCCAAAGATAAGGCTAATTCGCAGGAACATTCTCTTCGTCATTACTATAAAATGGACGAGGAAGATGATAAGAAGAAGAAGAAAGTAGAACAGAGTAGTGATGAGGAGGATAATGATGATGAATTAGAGGAGTTAGTGAAAGTTAAGAATGCGAAACCGGAGATTGATAATGGAACTGAGTCTGAAGAGAGCGGTGATTCGGAGGCTGATGCTATGGATTCAGATACTGATAAAGAAATAGATATTGATACGGATACTGATGATGGTGTTGATGAGAACGATTCTGAAGAGGATGAACCTGAAATTCAGGAAGAGGTAGCAGAGATTGAGAAAGAAACTCATAGGCTGGCTGTTGTTAATATGGACTGGCGGTATGTGAAGGCTGTGGACTTGTATGTATTATTTAGTTCATTAGCCCCACCTAATGGACTGGTCAAATCGGTAACTATTTATCCAACCGAGTTTGGCCTTCAACGTATGAATGAGGAGGAAGTTAAAGGGCCTGTTGCTCTATTTGATGGTGAAAATAAAAGAAGTGATGAAGACGATAGTGAGGAAGAAGAGACCGATGAAGAAGATTTTCATGATAGTGATTCTGACAATGAGAAGCTGCGTGCATATGAAAAGAGCAGGATGAGGTACTATTTTGCTTTGGTGGAATGTGACTCAAGTGCCACAGCAGATCACATTTACAAAGAAAATGATGGTGTTGAGTTTGAACACTCATCGAATCCACTTGACTTAAGGTTTATTCCAGACGATATGGAATTCAAACAGCCTCCTAAGGATGTTGCATCAGAGATACCTGCAAACTACGAGAACAAAGATTTCTATTCTCGGGCACTTCAGCACAGTAAAGTTGAACTTACTTGGGATGAGGATGAACCTCTTCGAGCAAATACTTTGAAGCGGAAATTCACTGACGAGCAGCTGGCTCAGTTGGAAATGGATGAATTAATAGCTTCTGATGTGAGTGATAGTGATGATAGTGAGGATAACAATGAGACTGATGAGCGGCCTAGAAAAAAAGATAATAAGTATCTTGCCTTGCTTGACAATAATTCAGATGAAGATGGAGATGATGATGCCATGGATATGGAGGTGACCTTCAATACAGGTTTGCAAGATATAAGCAAACATATTATGGAAAAGAAGGATAAAAAATCAAGAACAGTTTGGGAAGAATATCTGAGGAAAAAACGTGAGAAAAAGAAAGCCAGGAAAAACAAATCAAAGCATTCATCATCATCATCATCATCAGATGATGATAGCGATAATAATGATCATGAAGCTACTGAAGACGCAGATGACTTCTTCATTGATGAGGAACCTGATATTAAGAAGAAGAAGAAGAAGCCAGAAAGTAAAAATGACAAAGATCATAAGCTCCAAGATATGGATGGGGTAGCCAAAGCAAGCAAAGAAGAGCTTGAACTGTTGCTTGCTGATGACAAGGGGACAGGTACTGGTCTCAAGGGATATAATCTGAAGTTTAAAAAAGGCAAGGGCAAAAAAGGCAAGGGCAAAAAGGCGGAGAATGCTTTTGATGAGGGGAAAATACCAAACAATGCATTTGATGATCCACGTTTTGCATCTATCTTCTCAGCTGACTTCGCTATTGATCCCACCGATCCACAATTTAAAAGGAGCGCCGTGTATGCCAGGCAGCTGGCACAGAAGCAGCAGAAGGGTCGTGAAGAATTATCAGTAGAAAGGGAGCACATGAAGTTTCCGAAAGAAACACAATTGTCTTCTGATGGTTCTGGTATGAAGGAGAAGGGTGGGGAAGAAGGGTCAGATGATTTGAAATCAAAGCAAGATAAATTGGAGTTATCATCTTTGGTTAAATCGATTAAGATGAAATCAAAGCAAATCCAGCTATCCTCTGATGTCAATACAAAGAAAGCTGGAAAATCACAATTTAAGAAAAGGAAGCACTAG

Protein sequence

>MsG0480022791.01.T01

MGSKKENKKNHDDNKGKKKMKNNGKRKDSSSNSKKSDKPLHSNDKVVIEDPRFAMVHTDPRFREPPKHQTKVAIDSRFDRMFTHKSFLPSSAPVDKRGKPKDKANSQEHSLRHYYKMDEEDDKKKKKVEQSSDEEDNDDELEELVKVKNAKPEIDNGTESEESGDSEADAMDSDTDKEIDIDTDTDDGVDENDSEEDEPEIQEEVAEIEKETHRLAVVNMDWRYVKAVDLYVLFSSLAPPNGLVKSVTIYPTEFGLQRMNEEEVKGPVALFDGENKRSDEDDSEEEETDEEDFHDSDSDNEKLRAYEKSRMRYYFALVECDSSATADHIYKENDGVEFEHSSNPLDLRFIPDDMEFKQPPKDVASEIPANYENKDFYSRALQHSKVELTWDEDEPLRANTLKRKFTDEQLAQLEMDELIASDVSDSDDSEDNNETDERPRKKDNKYLALLDNNSDEDGDDDAMDMEVTFNTGLQDISKHIMEKKDKKSRTVWEEYLRKKREKKKARKNKSKHSSSSSSSDDDSDNNDHEATEDADDFFIDEEPDIKKKKKKPESKNDKDHKLQDMDGVAKASKEELELLLADDKGTGTGLKGYNLKFKKGKGKKGKGKKAENAFDEGKIPNNAFDDPRFASIFSADFAIDPTDPQFKRSAVYARQLAQKQQKGREELSVEREHMKFPKETQLSSDGSGMKEKGGEEGSDDLKSKQDKLELSSLVKSIKMKSKQIQLSSDVNTKKAGKSQFKKRKH*