AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280007782.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280007782.01.T01 MTR_2g031980 95.527 313 14 0 27 339 1 313 0.0 615
MsG0280007782.01.T01 MTR_8g038220 48.882 313 159 1 27 339 1 312 1.43e-110 325
MsG0280007782.01.T01 MTR_8g038220 47.923 313 163 0 27 339 1 313 1.05e-108 320
MsG0280007782.01.T01 MTR_3g018780 46.945 311 165 0 27 337 1 311 5.19e-108 318
MsG0280007782.01.T01 MTR_3g018790 47.284 313 165 0 27 339 1 313 1.31e-104 309
MsG0280007782.01.T01 MTR_8g038180 47.267 311 164 0 27 337 1 311 1.12e-102 305
MsG0280007782.01.T01 MTR_5g063670 46.006 313 168 1 27 338 1 313 4.24e-102 303
MsG0280007782.01.T01 MTR_8g038210 45.048 313 171 1 27 339 1 312 9.62e-96 287
MsG0280007782.01.T01 MTR_8g038210 43.770 313 175 1 27 339 1 312 2.28e-93 281
MsG0280007782.01.T01 MTR_0276s0050 43.564 303 171 0 37 339 12 314 6.99e-88 267
MsG0280007782.01.T01 MTR_3g018790 45.228 241 132 0 99 339 19 259 1.26e-72 226
MsG0280007782.01.T01 MTR_8g038150 37.500 304 187 1 37 337 12 315 1.54e-66 212
MsG0280007782.01.T01 MTR_8g107640 36.093 302 191 2 37 337 12 312 2.60e-65 209
MsG0280007782.01.T01 MTR_6g071605 36.093 302 191 2 37 337 12 312 4.32e-65 208
MsG0280007782.01.T01 MTR_6g071615 36.424 302 190 2 37 337 12 312 1.62e-62 202
MsG0280007782.01.T01 MTR_1g033560 33.882 304 199 2 37 339 12 314 6.57e-60 195
MsG0280007782.01.T01 MTR_1g112520 35.161 310 197 3 31 337 4 312 1.55e-59 194
MsG0280007782.01.T01 MTR_8g038170 37.778 315 171 6 40 337 5 311 6.03e-58 190
MsG0280007782.01.T01 MTR_8g038170 37.778 315 171 6 40 337 5 311 6.03e-58 190
MsG0280007782.01.T01 MTR_3g018920 41.706 211 91 1 27 237 1 179 1.41e-55 179
MsG0280007782.01.T01 MTR_6g071595 34.448 299 194 2 40 337 15 312 2.08e-55 183
MsG0280007782.01.T01 MTR_6g071595 33.054 239 158 2 40 277 15 252 6.74e-41 144
MsG0280007782.01.T01 MTR_6g028030 26.277 274 194 4 70 335 34 307 1.05e-25 105
MsG0280007782.01.T01 MTR_3g018925 46.316 95 51 0 245 339 14 108 1.25e-20 85.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280007782.01.T01 AT5G12380 58.654 312 129 0 27 338 1 312 2.26e-135 387
MsG0280007782.01.T01 AT5G10230 47.020 302 160 0 38 339 13 314 2.33e-98 293
MsG0280007782.01.T01 AT5G10220 46.835 316 165 2 27 339 1 316 8.05e-98 292
MsG0280007782.01.T01 AT1G35720 44.737 304 167 1 37 339 12 315 1.10e-95 287
MsG0280007782.01.T01 AT5G65020 42.675 314 178 2 27 338 1 314 2.01e-89 271
MsG0280007782.01.T01 AT5G65020 43.253 289 163 1 51 338 11 299 8.77e-86 261
MsG0280007782.01.T01 AT2G38760 41.424 309 175 2 37 339 12 320 7.61e-79 244
MsG0280007782.01.T01 AT1G68090 32.781 302 202 1 37 337 12 313 1.41e-58 192
MsG0280007782.01.T01 AT2G38750 35.065 308 175 6 47 336 15 315 1.40e-52 176
MsG0280007782.01.T01 AT2G38750 35.197 304 172 6 51 336 2 298 1.77e-52 176
MsG0280007782.01.T01 AT1G68090 32.218 239 161 1 37 274 12 250 1.76e-43 150

Find 47 sgRNAs with CRISPR-Local

Find 129 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTGACTTTCAATATCTTTA+AGG 0.055725 2:-20520823 MsG0280007782.01.T01:CDS
AAGTCATCTTACCTTATTAA+TGG 0.196321 2:+20520785 None:intergenic
TTCAATCAATTGATGAAGTA+TGG 0.245555 2:+20520911 None:intergenic
CATTGTTTCTCTTCAGAAAA+TGG 0.270523 2:+20520334 None:intergenic
TTACCTTGGCTAAATATCTT+TGG 0.286851 2:+20520559 None:intergenic
ACCTAGCAATGTTGTCAAAA+TGG 0.287706 2:-20523130 None:intergenic
ATCTCACGCCTTGAATGATT+TGG 0.303941 2:-20520427 MsG0280007782.01.T01:CDS
CAGCTCAAAACTGAACTTTC+AGG 0.310428 2:-20521501 MsG0280007782.01.T01:CDS
TCGTGCAGAGAAGGACTTAA+AGG 0.320396 2:-20520367 MsG0280007782.01.T01:CDS
TTTCAATTGTAGGGATTATC+AGG 0.320601 2:-20520642 MsG0280007782.01.T01:intron
TAGAAATACTGAAGAGCTTC+TGG 0.326830 2:-20521207 MsG0280007782.01.T01:CDS
CCGAGAATTTGAAAATCTTC+CGG 0.331859 2:-20523087 MsG0280007782.01.T01:intron
CAATGTTGTCAAAATGGAAT+TGG 0.341521 2:-20523124 MsG0280007782.01.T01:CDS
GTATGGCACAACCATTAATA+AGG 0.354944 2:-20520796 MsG0280007782.01.T01:intron
TCAATAATCACTTTGTAATC+TGG 0.360081 2:+20521242 None:intergenic
AATATCTTTAAGGACTTGTA+TGG 0.373979 2:-20520813 MsG0280007782.01.T01:CDS
TTCATTTGCCAAATCATTCA+AGG 0.394711 2:+20520419 None:intergenic
GCTCCAATGTATTCATCAAT+TGG 0.396159 2:+20520615 None:intergenic
ATTCATTTCCCAACAATTCA+AGG 0.397289 2:+20520256 None:intergenic
ATAGTTTCAGCATCTTCAAT+TGG 0.400976 2:+20521801 None:intergenic
GAGAGGCAACATCTTCTTCA+AGG 0.414127 2:+20521147 None:intergenic
ATCCATTGTCCAATGACTAA+TGG 0.425161 2:+20521316 None:intergenic
TTCATTTCGGTGTGCTAGTA+CGG 0.451418 2:+20521584 None:intergenic
TTATCAAGAAATTTATCATC+AGG 0.460775 2:-20521535 MsG0280007782.01.T01:CDS
TGAACTTTCAGGAAACTTTG+AGG 0.461813 2:-20521490 MsG0280007782.01.T01:intron
TCAAAGAAAACTTGTGAGGC+TGG 0.474305 2:-20521559 MsG0280007782.01.T01:CDS
ATCAGAGAGCCATTAGTCAT+TGG 0.483585 2:-20521325 MsG0280007782.01.T01:intron
AGTGTAGCATCTCTTTCAGC+TGG 0.500813 2:+20521293 None:intergenic
TATTAATGAGGCACTAAAGA+AGG 0.504365 2:-20521270 MsG0280007782.01.T01:CDS
GGCAATGCTTGTAAAGAGAA+TGG 0.512438 2:+20521168 None:intergenic
CCATTCATGATTCTGTTGCT+AGG 0.535196 2:-20520308 MsG0280007782.01.T01:CDS
GATGTTGCCTCTCAAACTAC+TGG 0.536143 2:-20521137 MsG0280007782.01.T01:CDS
ATTCTGTTGCTAGGAAGACA+TGG 0.545887 2:-20520299 MsG0280007782.01.T01:CDS
CCTAGCAACAGAATCATGAA+TGG 0.562607 2:+20520308 None:intergenic
AGTCCAATTGATGAATACAT+TGG 0.565821 2:-20520618 MsG0280007782.01.T01:CDS
TATCGTCACTCGTGCAGAGA+AGG 0.572532 2:-20520376 MsG0280007782.01.T01:CDS
AGATGCTACACTTATTAATG+AGG 0.597858 2:-20521282 MsG0280007782.01.T01:CDS
GCTGTCATCGATGCAACGAA+CGG 0.606760 2:+20520581 None:intergenic
TTCTGTTGCTAGGAAGACAT+GGG 0.615900 2:-20520298 MsG0280007782.01.T01:CDS
AATATCACCAGTAGTTTGAG+AGG 0.620279 2:+20521130 None:intergenic
ACTATCAAGAATGCATGCAA+AGG 0.624132 2:-20521783 MsG0280007782.01.T01:intron
AAGCTCAAAGAAAACTTGTG+AGG 0.650998 2:-20521563 MsG0280007782.01.T01:CDS
CAGCCAAAGATATTTAGCCA+AGG 0.651781 2:-20520562 MsG0280007782.01.T01:intron
AGCCATTAGTCATTGGACAA+TGG 0.653584 2:-20521318 MsG0280007782.01.T01:CDS
AGATGAGTTTGATGAGAATG+TGG 0.686942 2:-20520949 MsG0280007782.01.T01:CDS
ATAAGCACTTACAAGTACGA+TGG 0.694159 2:-20520972 MsG0280007782.01.T01:CDS
TCTGTTGCTAGGAAGACATG+GGG 0.714554 2:-20520297 MsG0280007782.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTTCCAAAAAAAAAAAAA+TGG + Chr2:20521119-20521138 None:intergenic 10.0%
!! AGTTATTATTATATTGAAAA+GGG - Chr2:20521286-20521305 MsG0280007782.01.T01:CDS 10.0%
!! ATATTTATTTATTAGTGATA+TGG - Chr2:20520429-20520448 MsG0280007782.01.T01:CDS 10.0%
!!! TTTTTTTTTTTTTGGAAATT+AGG - Chr2:20521119-20521138 MsG0280007782.01.T01:intron 10.0%
!! AAAAAACGTATTTAGTTATT+AGG - Chr2:20521384-20521403 MsG0280007782.01.T01:intron 15.0%
!! CAGTTATTATTATATTGAAA+AGG - Chr2:20521285-20521304 MsG0280007782.01.T01:CDS 15.0%
!!! TAAAAACATTGATTATTAGT+CGG - Chr2:20520516-20520535 MsG0280007782.01.T01:intron 15.0%
!!! TTAGTTATTAGGAATATTTT+AGG - Chr2:20521395-20521414 MsG0280007782.01.T01:intron 15.0%
!! AAAAGTAGTTAAATCAACTA+CGG + Chr2:20520386-20520405 None:intergenic 20.0%
!! AAAGAATATAGTGATGATAA+GGG - Chr2:20520554-20520573 MsG0280007782.01.T01:intron 20.0%
!! AGAAATTATCAAATAGAGAA+TGG + Chr2:20522872-20522891 None:intergenic 20.0%
!! ATATTCATGTCTAATAACAA+AGG - Chr2:20521679-20521698 MsG0280007782.01.T01:intron 20.0%
!! TATATCCATGCAATAATATA+TGG + Chr2:20521159-20521178 None:intergenic 20.0%
!! TATTCATGTCTAATAACAAA+GGG - Chr2:20521680-20521699 MsG0280007782.01.T01:intron 20.0%
!! TATTTCATGCAATAAAATCA+AGG - Chr2:20522686-20522705 MsG0280007782.01.T01:intron 20.0%
!! TTATCAAGAAATTTATCATC+AGG - Chr2:20521841-20521860 MsG0280007782.01.T01:CDS 20.0%
!!! AAAAACATTGATTATTAGTC+GGG - Chr2:20520517-20520536 MsG0280007782.01.T01:intron 20.0%
!!! AATTTGTTGTTTTCAATTGT+AGG - Chr2:20522724-20522743 MsG0280007782.01.T01:intron 20.0%
!!! AGTTTTTTTCTTCTTCTTTT+AGG - Chr2:20521330-20521349 MsG0280007782.01.T01:intron 20.0%
!!! ATTTCCATGGTATAAATTTT+TGG + Chr2:20522033-20522052 None:intergenic 20.0%
!!! ATTTGTTGTTTTCAATTGTA+GGG - Chr2:20522725-20522744 MsG0280007782.01.T01:intron 20.0%
!!! ATTTTTATCCTTGAATTGTT+GGG - Chr2:20523112-20523131 MsG0280007782.01.T01:CDS 20.0%
!!! CAATAATAATTTTGTGATGT+TGG + Chr2:20522843-20522862 None:intergenic 20.0%
!!! GAAAATGTTTTATGTAAAAG+TGG + Chr2:20521231-20521250 None:intergenic 20.0%
!!! TTATCTTATTTCTTTATCGT+TGG + Chr2:20520829-20520848 None:intergenic 20.0%
! AAATATGGAGGAAAATATGT+AGG - Chr2:20520986-20521005 MsG0280007782.01.T01:CDS 25.0%
! AAGTCATCTTACCTTATTAA+TGG + Chr2:20522594-20522613 None:intergenic 25.0%
! ATTGCCAAAAATTTATACCA+TGG - Chr2:20522026-20522045 MsG0280007782.01.T01:intron 25.0%
! CAATAAAATCAAGGATATCA+TGG - Chr2:20522695-20522714 MsG0280007782.01.T01:intron 25.0%
! GAAAGAATATAGTGATGATA+AGG - Chr2:20520553-20520572 MsG0280007782.01.T01:intron 25.0%
! GCTTGAAGAAAGAAAAAAAA+TGG - Chr2:20521523-20521542 MsG0280007782.01.T01:CDS 25.0%
! GTTTCAAAATCTATACTTTG+AGG - Chr2:20521977-20521996 MsG0280007782.01.T01:intron 25.0%
! TCAATAATCACTTTGTAATC+TGG + Chr2:20522137-20522156 None:intergenic 25.0%
! TGTGACTTTCAATATCTTTA+AGG - Chr2:20522553-20522572 MsG0280007782.01.T01:intron 25.0%
! TTCAATCAATTGATGAAGTA+TGG + Chr2:20522468-20522487 None:intergenic 25.0%
!! AAGGGAATAAATTTTATTCG+AGG - Chr2:20521698-20521717 MsG0280007782.01.T01:intron 25.0%
!! AATATCTTTAAGGACTTGTA+TGG - Chr2:20522563-20522582 MsG0280007782.01.T01:intron 25.0%
!! ATGTGATTTTTATCATGTAC+AGG - Chr2:20521740-20521759 MsG0280007782.01.T01:intron 25.0%
!! GATTTTTATCCTTGAATTGT+TGG - Chr2:20523111-20523130 MsG0280007782.01.T01:CDS 25.0%
!! TGTGTATGTTAACTTGATTT+AGG - Chr2:20522922-20522941 MsG0280007782.01.T01:intron 25.0%
!! TTTTTATCATGTACAGGATT+CGG - Chr2:20521746-20521765 MsG0280007782.01.T01:intron 25.0%
!!! AACAGTTTTGTTATGTTACA+TGG - Chr2:20522314-20522333 MsG0280007782.01.T01:intron 25.0%
!!! AATCTTGTTGGTTTAATCTT+CGG - Chr2:20520485-20520504 MsG0280007782.01.T01:intron 25.0%
!!! CGTAATTGATTGCTTTTTTT+AGG - Chr2:20521195-20521214 MsG0280007782.01.T01:CDS 25.0%
!!! GGTGTCCATTTTTTTTTTTT+TGG - Chr2:20521111-20521130 MsG0280007782.01.T01:intron 25.0%
!!! TATTAGGAATATTTTAGGAC+TGG - Chr2:20521400-20521419 MsG0280007782.01.T01:intron 25.0%
!!! TTCTTTGAGAAATCTTTTGA+AGG + Chr2:20522651-20522670 None:intergenic 25.0%
ACGTATTCGACTTTATAGTT+AGG - Chr2:20521090-20521109 MsG0280007782.01.T01:intron 30.0%
ACTGTTCAGACGTATAAATA+TGG - Chr2:20520971-20520990 MsG0280007782.01.T01:CDS 30.0%
ACTTGCCATATATTATTGCA+TGG - Chr2:20521151-20521170 MsG0280007782.01.T01:CDS 30.0%
AGATGCTACACTTATTAATG+AGG - Chr2:20522094-20522113 MsG0280007782.01.T01:intron 30.0%
AGTCCAATTGATGAATACAT+TGG - Chr2:20522758-20522777 MsG0280007782.01.T01:intron 30.0%
ATAGTTTCAGCATCTTCAAT+TGG + Chr2:20521578-20521597 None:intergenic 30.0%
ATTAGTGATATGGTTCATTC+TGG - Chr2:20520439-20520458 MsG0280007782.01.T01:intron 30.0%
ATTCATTTCCCAACAATTCA+AGG + Chr2:20523123-20523142 None:intergenic 30.0%
TAATGCATTTATCAAACACG+TGG - Chr2:20520938-20520957 MsG0280007782.01.T01:CDS 30.0%
TATTAGTCGGGTATGAATAT+GGG - Chr2:20520529-20520548 MsG0280007782.01.T01:intron 30.0%
TATTTCCGTGACAATTTGAT+TGG + Chr2:20520659-20520678 None:intergenic 30.0%
TTACCTTGGCTAAATATCTT+TGG + Chr2:20522820-20522839 None:intergenic 30.0%
TTATTAGTCGGGTATGAATA+TGG - Chr2:20520528-20520547 MsG0280007782.01.T01:intron 30.0%
TTCATTTGCCAAATCATTCA+AGG + Chr2:20522960-20522979 None:intergenic 30.0%
TTTCAATTGTAGGGATTATC+AGG - Chr2:20522734-20522753 MsG0280007782.01.T01:intron 30.0%
TTTGAACAAGTGCAACAAAA+TGG - Chr2:20522344-20522363 MsG0280007782.01.T01:intron 30.0%
! AACAAAACTCTTTTCGTAGT+TGG - Chr2:20520883-20520902 MsG0280007782.01.T01:CDS 30.0%
! AGCTTTTAACGATGATGAAA+TGG - Chr2:20522493-20522512 MsG0280007782.01.T01:intron 30.0%
! CATTGTTTCTCTTCAGAAAA+TGG + Chr2:20523045-20523064 None:intergenic 30.0%
! GTTTTCTTTGAGCTTCATTT+CGG + Chr2:20521808-20521827 None:intergenic 30.0%
! TATTAATGAGGCACTAAAGA+AGG - Chr2:20522106-20522125 MsG0280007782.01.T01:intron 30.0%
! TTGATCGACTCTAAAAGTAA+AGG + Chr2:20520339-20520358 None:intergenic 30.0%
! TTTTATCATGTACAGGATTC+GGG - Chr2:20521747-20521766 MsG0280007782.01.T01:intron 30.0%
! TTTTCAAATTCTCGGTTGAA+CGG + Chr2:20520284-20520303 None:intergenic 30.0%
!! CAATTTGATTGGTAACGAAT+TGG + Chr2:20520648-20520667 None:intergenic 30.0%
!!! AATTTTATTCGAGGCATTGT+CGG - Chr2:20521707-20521726 MsG0280007782.01.T01:intron 30.0%
!!! AGGACTGGAAGTTTTTTTTA+GGG - Chr2:20521415-20521434 MsG0280007782.01.T01:intron 30.0%
!!! TAGGACTGGAAGTTTTTTTT+AGG - Chr2:20521414-20521433 MsG0280007782.01.T01:intron 30.0%
AAGCTCAAAGAAAACTTGTG+AGG - Chr2:20521813-20521832 MsG0280007782.01.T01:CDS 35.0%
AATATCACCAGTAGTTTGAG+AGG + Chr2:20522249-20522268 None:intergenic 35.0%
ACTATCAAGAATGCATGCAA+AGG - Chr2:20521593-20521612 MsG0280007782.01.T01:CDS 35.0%
AGATGAGTTTGATGAGAATG+TGG - Chr2:20522427-20522446 MsG0280007782.01.T01:intron 35.0%
AGTAAAGGATCGATCAAATG+CGG + Chr2:20520324-20520343 None:intergenic 35.0%
ATAAGCACTTACAAGTACGA+TGG - Chr2:20522404-20522423 MsG0280007782.01.T01:intron 35.0%
ATCCATTGTCCAATGACTAA+TGG + Chr2:20522063-20522082 None:intergenic 35.0%
CCGAGAATTTGAAAATCTTC+CGG - Chr2:20520289-20520308 MsG0280007782.01.T01:CDS 35.0%
CGTTACCAATCAAATTGTCA+CGG - Chr2:20520651-20520670 MsG0280007782.01.T01:intron 35.0%
GAATTTGAAAATCTTCCGGT+TGG - Chr2:20520293-20520312 MsG0280007782.01.T01:CDS 35.0%
GCTCCAATGTATTCATCAAT+TGG + Chr2:20522764-20522783 None:intergenic 35.0%
GTATGGCACAACCATTAATA+AGG - Chr2:20522580-20522599 MsG0280007782.01.T01:intron 35.0%
GTTCAGACGTATAAATATGG+AGG - Chr2:20520974-20520993 MsG0280007782.01.T01:CDS 35.0%
TAGAAATACTGAAGAGCTTC+TGG - Chr2:20522169-20522188 MsG0280007782.01.T01:intron 35.0%
TGAACTTTCAGGAAACTTTG+AGG - Chr2:20521886-20521905 MsG0280007782.01.T01:intron 35.0%
! AAACCAACAAGATTTTCTGC+TGG + Chr2:20520479-20520498 None:intergenic 35.0%
! ACTATTTCTCATGCAGTTGT+TGG - Chr2:20522373-20522392 MsG0280007782.01.T01:intron 35.0%
! CCGGAAGATTTTCAAATTCT+CGG + Chr2:20520292-20520311 None:intergenic 35.0%
!! TTTTGTGATGTTGGTTACCT+TGG + Chr2:20522834-20522853 None:intergenic 35.0%
AGATCGTAGGCTCTATCAAT+CGG + Chr2:20521050-20521069 None:intergenic 40.0%
AGCCATTAGTCATTGGACAA+TGG - Chr2:20522058-20522077 MsG0280007782.01.T01:intron 40.0%
ATCAGAGAGCCATTAGTCAT+TGG - Chr2:20522051-20522070 MsG0280007782.01.T01:intron 40.0%
ATCTCACGCCTTGAATGATT+TGG - Chr2:20522949-20522968 MsG0280007782.01.T01:intron 40.0%
ATTCTGTTGCTAGGAAGACA+TGG - Chr2:20523077-20523096 MsG0280007782.01.T01:intron 40.0%
CAGCCAAAGATATTTAGCCA+AGG - Chr2:20522814-20522833 MsG0280007782.01.T01:intron 40.0%
CAGCTCAAAACTGAACTTTC+AGG - Chr2:20521875-20521894 MsG0280007782.01.T01:intron 40.0%
CATTCATCTTGTAAGCTGTG+AGG + Chr2:20520713-20520732 None:intergenic 40.0%
CCATTCATGATTCTGTTGCT+AGG - Chr2:20523068-20523087 MsG0280007782.01.T01:intron 40.0%
CCTAGCAACAGAATCATGAA+TGG + Chr2:20523071-20523090 None:intergenic 40.0%
GAACCAGCAGAAAATCTTGT+TGG - Chr2:20520473-20520492 MsG0280007782.01.T01:intron 40.0%
GGCAATGCTTGTAAAGAGAA+TGG + Chr2:20522211-20522230 None:intergenic 40.0%
TAATGGCTCTCTGATTTCCA+TGG + Chr2:20522046-20522065 None:intergenic 40.0%
TCAAAGAAAACTTGTGAGGC+TGG - Chr2:20521817-20521836 MsG0280007782.01.T01:CDS 40.0%
TTCTGTTGCTAGGAAGACAT+GGG - Chr2:20523078-20523097 MsG0280007782.01.T01:intron 40.0%
! TTCATTTCGGTGTGCTAGTA+CGG + Chr2:20521795-20521814 None:intergenic 40.0%
!!! AAGCTAGCCATTTTTGTACG+AGG - Chr2:20520800-20520819 MsG0280007782.01.T01:CDS 40.0%
!!! CTTTTAGAGTCGATCAAACC+CGG - Chr2:20520342-20520361 MsG0280007782.01.T01:CDS 40.0%
AGTGTAGCATCTCTTTCAGC+TGG + Chr2:20522086-20522105 None:intergenic 45.0%
GAGAGGCAACATCTTCTTCA+AGG + Chr2:20522232-20522251 None:intergenic 45.0%
GATGTTGCCTCTCAAACTAC+TGG - Chr2:20522239-20522258 MsG0280007782.01.T01:intron 45.0%
GTGTGATACGACTAGATCGT+AGG + Chr2:20521063-20521082 None:intergenic 45.0%
GTTCAAACTGATTGTCCCAC+CGG + Chr2:20520364-20520383 None:intergenic 45.0%
TCAAATGCGGTTGAACCAAC+CGG + Chr2:20520311-20520330 None:intergenic 45.0%
TCGTGCAGAGAAGGACTTAA+AGG - Chr2:20523009-20523028 MsG0280007782.01.T01:intron 45.0%
TCTGTTGCTAGGAAGACATG+GGG - Chr2:20523079-20523098 MsG0280007782.01.T01:intron 45.0%
TTCAAACTGATTGTCCCACC+GGG + Chr2:20520363-20520382 None:intergenic 45.0%
TTGGCCTCCTCGTACAAAAA+TGG + Chr2:20520810-20520829 None:intergenic 45.0%
!!! CTAGCCATTTTTGTACGAGG+AGG - Chr2:20520803-20520822 MsG0280007782.01.T01:CDS 45.0%
!! TCAAAAATAAAATAAAATTT+AGG - Chr2:20521023-20521042 MsG0280007782.01.T01:intron 5.0%
!!! TAAATTTTATTTTATTTTTG+AGG + Chr2:20521024-20521043 None:intergenic 5.0%
GCTGTCATCGATGCAACGAA+CGG + Chr2:20522798-20522817 None:intergenic 50.0%
TAGAGTCGATCAAACCCGGT+GGG - Chr2:20520346-20520365 MsG0280007782.01.T01:CDS 50.0%
TATCGTCACTCGTGCAGAGA+AGG - Chr2:20523000-20523019 MsG0280007782.01.T01:intron 50.0%
TTAGAGTCGATCAAACCCGG+TGG - Chr2:20520345-20520364 MsG0280007782.01.T01:CDS 50.0%
Chromosome Type Strat End Strand Name
Chr2 gene 20520254 20523144 20520254 ID=MsG0280007782.01;Name=MsG0280007782.01
Chr2 mRNA 20520254 20523144 20520254 ID=MsG0280007782.01.T01;Parent=MsG0280007782.01;Name=MsG0280007782.01.T01;_AED=0.49;_eAED=0.52;_QI=0|0|0|1|1|0.85|7|0|339
Chr2 exon 20523088 20523144 20523088 ID=MsG0280007782.01.T01:exon:10476;Parent=MsG0280007782.01.T01
Chr2 exon 20521784 20521877 20521784 ID=MsG0280007782.01.T01:exon:10475;Parent=MsG0280007782.01.T01
Chr2 exon 20521491 20521636 20521491 ID=MsG0280007782.01.T01:exon:10474;Parent=MsG0280007782.01.T01
Chr2 exon 20521124 20521342 20521124 ID=MsG0280007782.01.T01:exon:10473;Parent=MsG0280007782.01.T01
Chr2 exon 20520797 20521009 20520797 ID=MsG0280007782.01.T01:exon:10472;Parent=MsG0280007782.01.T01
Chr2 exon 20520563 20520652 20520563 ID=MsG0280007782.01.T01:exon:10471;Parent=MsG0280007782.01.T01
Chr2 exon 20520254 20520454 20520254 ID=MsG0280007782.01.T01:exon:10470;Parent=MsG0280007782.01.T01
Chr2 CDS 20523088 20523144 20523088 ID=MsG0280007782.01.T01:cds;Parent=MsG0280007782.01.T01
Chr2 CDS 20521784 20521877 20521784 ID=MsG0280007782.01.T01:cds;Parent=MsG0280007782.01.T01
Chr2 CDS 20521491 20521636 20521491 ID=MsG0280007782.01.T01:cds;Parent=MsG0280007782.01.T01
Chr2 CDS 20521124 20521342 20521124 ID=MsG0280007782.01.T01:cds;Parent=MsG0280007782.01.T01
Chr2 CDS 20520797 20521009 20520797 ID=MsG0280007782.01.T01:cds;Parent=MsG0280007782.01.T01
Chr2 CDS 20520563 20520652 20520563 ID=MsG0280007782.01.T01:cds;Parent=MsG0280007782.01.T01
Chr2 CDS 20520254 20520454 20520254 ID=MsG0280007782.01.T01:cds;Parent=MsG0280007782.01.T01
Gene Sequence

>MsG0280007782.01.T01

ATGTTGTCAAAATGGAATTGGATCAGTCCGTTCAACCGAGAATTTGAAAATCTTCCGACGCTTGAAGAAAGAAAAAAAATGGCTTCTCTACTTACTGTAAAAGATTTTTCTCCAATTGAAGATGCTGAAACTATCAAGAATGCATGCAAAGGATTCGGGACAAATGAGACTGCGATTATATCCGTACTAGCACACCGAAATGAAGCTCAAAGAAAACTTGTGAGGCTGGCTTATCAAGAAATTTATCATCAGGATCTTATAGAACAGCTCAAAACTGAACTTTCAGGAAACTTTGAGAGAGCCATTAGTCATTGGACAATGGATCCAGCTGAAAGAGATGCTACACTTATTAATGAGGCACTAAAGAAGGCAACACCAGATTACAAAGTGATTATTGAGATTGTTTGCACTAGAAATACTGAAGAGCTTCTGGCTTTAAAGCGTTCATACCATTCTCTTTACAAGCATTGCCTTGAAGAAGATGTTGCCTCTCAAACTACTGGTGATATTCGCAAATTGTTGGTTGCAGTTATAAGCACTTACAAGTACGATGGAGATGAGTTTGATGAGAATGTGGCTCATTCTGAAGCAACCATACTTCATCAATTGATTGAAAAGAAAGCTTTTAACGATGATGAAATGGTTAGAATTTTAAGCACAAGAAGTAAGAAGCAGCTATGTGTGACTTTCAATATCTTTAAGGACTTGTATGGCACAACCATTAATAAGGGATTATCAGGTAGTCCAATTGATGAATACATTGGAGCACTGCGTACTACCGTTCGTTGCATCGATGACAGCCAAAGATATTTAGCCAAGGTGTTATCTCACGCCTTGAATGATTTGGCAAATGAAGAAAATGCTTTGAGTCGTGTTATCGTCACTCGTGCAGAGAAGGACTTAAAGGAAATCAATGACCATTTTCTGAAGAGAAACAATGTCACCATTCATGATTCTGTTGCTAGGAAGACATGGGGAAATTACAAGATTTTTATCCTTGAATTGTTGGGAAATGAATAA
Protein sequence

>MsG0280007782.01.T01

MLSKWNWISPFNREFENLPTLEERKKMASLLTVKDFSPIEDAETIKNACKGFGTNETAIISVLAHRNEAQRKLVRLAYQEIYHQDLIEQLKTELSGNFERAISHWTMDPAERDATLINEALKKATPDYKVIIEIVCTRNTEELLALKRSYHSLYKHCLEEDVASQTTGDIRKLLVAVISTYKYDGDEFDENVAHSEATILHQLIEKKAFNDDEMVRILSTRSKKQLCVTFNIFKDLYGTTINKGLSGSPIDEYIGALRTTVRCIDDSQRYLAKVLSHALNDLANEENALSRVIVTRAEKDLKEINDHFLKRNNVTIHDSVARKTWGNYKIFILELLGNE*