AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580027825.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580027825.01.T02 MTR_5g063670 98.276 290 5 0 63 352 27 316 0.0 583
MsG0580027825.01.T02 MTR_0276s0050 67.820 289 93 0 63 351 27 315 7.30e-138 394
MsG0580027825.01.T02 MTR_2g031980 46.875 288 153 0 63 350 26 313 5.94e-94 283
MsG0580027825.01.T02 MTR_8g038220 48.443 289 149 0 63 351 25 313 3.81e-92 278
MsG0580027825.01.T02 MTR_8g038220 48.443 289 149 0 63 351 26 314 4.24e-92 278
MsG0580027825.01.T02 MTR_3g018780 46.367 289 155 0 63 351 26 314 3.00e-91 276
MsG0580027825.01.T02 MTR_3g018790 47.059 289 153 0 63 351 26 314 1.27e-89 271
MsG0580027825.01.T02 MTR_8g038210 46.713 289 153 1 63 351 26 313 5.73e-88 267
MsG0580027825.01.T02 MTR_8g038210 46.713 289 153 1 63 351 26 313 6.11e-88 267
MsG0580027825.01.T02 MTR_8g038180 47.552 286 150 0 63 348 26 311 1.67e-86 264
MsG0580027825.01.T02 MTR_8g038150 43.403 288 160 1 64 348 28 315 1.39e-72 228
MsG0580027825.01.T02 MTR_3g018790 44.215 242 135 0 110 351 19 260 1.02e-67 214
MsG0580027825.01.T02 MTR_8g038170 38.742 302 160 5 64 348 18 311 1.29e-57 189
MsG0580027825.01.T02 MTR_8g038170 38.742 302 160 5 64 348 18 311 1.29e-57 189
MsG0580027825.01.T02 MTR_8g107640 35.764 288 181 4 63 348 27 312 2.09e-57 189
MsG0580027825.01.T02 MTR_1g033560 35.069 288 185 2 64 350 28 314 3.87e-55 183
MsG0580027825.01.T02 MTR_6g071605 34.130 293 185 3 63 351 27 315 3.76e-54 181
MsG0580027825.01.T02 MTR_6g071615 35.836 293 180 3 63 351 27 315 1.86e-53 179
MsG0580027825.01.T02 MTR_1g112520 34.483 290 182 3 63 348 27 312 9.52e-52 174
MsG0580027825.01.T02 MTR_6g071595 34.138 290 183 3 63 348 27 312 1.85e-49 168
MsG0580027825.01.T02 MTR_3g018920 45.161 186 70 1 63 248 26 179 9.87e-46 154
MsG0580027825.01.T02 MTR_6g071595 32.895 228 145 3 63 286 27 250 6.06e-34 126
MsG0580027825.01.T02 MTR_6g028030 27.817 284 179 6 80 346 33 307 2.53e-28 112
MsG0580027825.01.T02 MTR_3g018925 38.542 96 59 0 256 351 14 109 4.98e-18 79.0
MsG0580027825.01.T02 MTR_8g038090 39.080 87 51 2 264 348 4 90 3.07e-11 59.7
MsG0580027825.01.T01 MTR_5g063670 98.276 290 5 0 63 352 27 316 0.0 583
MsG0580027825.01.T01 MTR_0276s0050 67.820 289 93 0 63 351 27 315 7.30e-138 394
MsG0580027825.01.T01 MTR_2g031980 46.875 288 153 0 63 350 26 313 5.94e-94 283
MsG0580027825.01.T01 MTR_8g038220 48.443 289 149 0 63 351 25 313 3.81e-92 278
MsG0580027825.01.T01 MTR_8g038220 48.443 289 149 0 63 351 26 314 4.24e-92 278
MsG0580027825.01.T01 MTR_3g018780 46.367 289 155 0 63 351 26 314 3.00e-91 276
MsG0580027825.01.T01 MTR_3g018790 47.059 289 153 0 63 351 26 314 1.27e-89 271
MsG0580027825.01.T01 MTR_8g038210 46.713 289 153 1 63 351 26 313 5.73e-88 267
MsG0580027825.01.T01 MTR_8g038210 46.713 289 153 1 63 351 26 313 6.11e-88 267
MsG0580027825.01.T01 MTR_8g038180 47.552 286 150 0 63 348 26 311 1.67e-86 264
MsG0580027825.01.T01 MTR_8g038150 43.403 288 160 1 64 348 28 315 1.39e-72 228
MsG0580027825.01.T01 MTR_3g018790 44.215 242 135 0 110 351 19 260 1.02e-67 214
MsG0580027825.01.T01 MTR_8g038170 38.742 302 160 5 64 348 18 311 1.29e-57 189
MsG0580027825.01.T01 MTR_8g038170 38.742 302 160 5 64 348 18 311 1.29e-57 189
MsG0580027825.01.T01 MTR_8g107640 35.764 288 181 4 63 348 27 312 2.09e-57 189
MsG0580027825.01.T01 MTR_1g033560 35.069 288 185 2 64 350 28 314 3.87e-55 183
MsG0580027825.01.T01 MTR_6g071605 34.130 293 185 3 63 351 27 315 3.76e-54 181
MsG0580027825.01.T01 MTR_6g071615 35.836 293 180 3 63 351 27 315 1.86e-53 179
MsG0580027825.01.T01 MTR_1g112520 34.483 290 182 3 63 348 27 312 9.52e-52 174
MsG0580027825.01.T01 MTR_6g071595 34.138 290 183 3 63 348 27 312 1.85e-49 168
MsG0580027825.01.T01 MTR_3g018920 45.161 186 70 1 63 248 26 179 9.87e-46 154
MsG0580027825.01.T01 MTR_6g071595 32.895 228 145 3 63 286 27 250 6.06e-34 126
MsG0580027825.01.T01 MTR_6g028030 27.817 284 179 6 80 346 33 307 2.53e-28 112
MsG0580027825.01.T01 MTR_3g018925 38.542 96 59 0 256 351 14 109 4.98e-18 79.0
MsG0580027825.01.T01 MTR_8g038090 39.080 87 51 2 264 348 4 90 3.07e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580027825.01.T02 AT1G35720 71.821 291 81 1 63 352 27 317 1.09e-153 435
MsG0580027825.01.T02 AT5G10230 66.552 290 97 0 63 352 27 316 9.68e-143 407
MsG0580027825.01.T02 AT5G65020 65.292 291 100 1 63 352 27 317 3.61e-141 403
MsG0580027825.01.T02 AT5G65020 65.292 291 100 1 63 352 12 302 4.07e-141 402
MsG0580027825.01.T02 AT5G10220 64.726 292 101 1 63 352 27 318 2.66e-138 395
MsG0580027825.01.T02 AT5G12380 51.916 287 138 0 63 349 26 312 2.99e-105 311
MsG0580027825.01.T02 AT2G38760 40.411 292 168 2 63 348 27 318 1.26e-66 213
MsG0580027825.01.T02 AT1G68090 32.867 286 191 1 64 348 28 313 1.49e-52 176
MsG0580027825.01.T02 AT2G38750 35.577 312 178 6 57 351 14 319 5.34e-48 165
MsG0580027825.01.T02 AT2G38750 35.714 308 175 6 61 351 1 302 9.56e-48 164
MsG0580027825.01.T02 AT1G68090 30.045 223 155 1 64 285 28 250 3.71e-34 126
MsG0580027825.01.T01 AT1G35720 71.821 291 81 1 63 352 27 317 1.09e-153 435
MsG0580027825.01.T01 AT5G10230 66.552 290 97 0 63 352 27 316 9.68e-143 407
MsG0580027825.01.T01 AT5G65020 65.292 291 100 1 63 352 27 317 3.61e-141 403
MsG0580027825.01.T01 AT5G65020 65.292 291 100 1 63 352 12 302 4.07e-141 402
MsG0580027825.01.T01 AT5G10220 64.726 292 101 1 63 352 27 318 2.66e-138 395
MsG0580027825.01.T01 AT5G12380 51.916 287 138 0 63 349 26 312 2.99e-105 311
MsG0580027825.01.T01 AT2G38760 40.411 292 168 2 63 348 27 318 1.26e-66 213
MsG0580027825.01.T01 AT1G68090 32.867 286 191 1 64 348 28 313 1.49e-52 176
MsG0580027825.01.T01 AT2G38750 35.577 312 178 6 57 351 14 319 5.34e-48 165
MsG0580027825.01.T01 AT2G38750 35.714 308 175 6 61 351 1 302 9.56e-48 164
MsG0580027825.01.T01 AT1G68090 30.045 223 155 1 64 285 28 250 3.71e-34 126

Find 28 sgRNAs with CRISPR-Local

Find 319 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGTCTTTATGTTATGATTT+TGG 0.272122 5:-69178404 MsG0580027825.01.T01:three_prime_UTR
AAAGACAGGTACTCATCTTT+TGG 0.286380 5:+69178766 None:intergenic
TGACTATGAGAAAATGCTTC+TGG 0.397100 5:-69178533 MsG0580027825.01.T01:CDS
AGTATAGTACCTCAATCAAA+AGG 0.403746 5:+69178459 None:intergenic
GTACTAATTCAAATTATGCT+TGG 0.476205 5:+69178364 None:intergenic
ATCTTTGCAAAGTACCTCTC+GGG 0.480871 5:+69178712 None:intergenic
CTGATGAAGGAGCTCTTACA+AGG 0.491225 5:-69178660 MsG0580027825.01.T01:CDS
GAACAGCATCCCTCTTGATC+GGG 0.503273 5:-69178578 MsG0580027825.01.T01:CDS
TATCTTTGCAAAGTACCTCT+CGG 0.510736 5:+69178711 None:intergenic
AAGATCAACTGTCAAGTGCT+TGG 0.518462 5:-69178740 MsG0580027825.01.T01:CDS
GGAACAGCATCCCTCTTGAT+CGG 0.528164 5:-69178579 MsG0580027825.01.T01:CDS
AAATCACGATAGTGAACCTA+TGG 0.531738 5:-69178311 MsG0580027825.01.T01:three_prime_UTR
AACAAGCGAGGAACTGATGA+AGG 0.545290 5:-69178673 MsG0580027825.01.T01:CDS
CAGTTGATCTTAGTAAAGAC+AGG 0.551890 5:+69178752 None:intergenic
ACCGGTGGTGTCCTTGACAA+TGG 0.558648 5:+69178555 None:intergenic
GCCATTGTCAAGGACACCAC+CGG 0.564755 5:-69178556 MsG0580027825.01.T01:CDS
TGATTTGAAAATTATAGCTG+AGG 0.571271 5:-69178614 MsG0580027825.01.T01:CDS
GTATAGTACCTCAATCAAAA+GGG 0.578955 5:+69178460 None:intergenic
TCTTGATCGGGCCATTGTCA+AGG 0.589712 5:-69178566 MsG0580027825.01.T01:CDS
TTGACAATGGCCCGATCAAG+AGG 0.597730 5:+69178568 None:intergenic
TTATAGCTGAGGAGTATCAA+AGG 0.599060 5:-69178603 MsG0580027825.01.T01:CDS
AGGAGCTCTTACAAGGGTGG+TGG 0.601483 5:-69178653 MsG0580027825.01.T01:CDS
CTTTGCAAAGATAATTCGTG+AGG 0.652367 5:-69178701 MsG0580027825.01.T01:CDS
TGACAATGGCCCGATCAAGA+GGG 0.662335 5:+69178569 None:intergenic
TGAAGGAGCTCTTACAAGGG+TGG 0.668685 5:-69178656 MsG0580027825.01.T01:CDS
TGATGAAGGAGCTCTTACAA+GGG 0.669212 5:-69178659 MsG0580027825.01.T01:CDS
CGTGAGGCTATCAACAAGCG+AGG 0.677690 5:-69178685 MsG0580027825.01.T01:CDS
TAGCTGAGGAGTATCAAAGG+AGG 0.718780 5:-69178600 MsG0580027825.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAGATTTACATAAAATT+AGG + Chr5:69178690-69178709 None:intergenic 10.0%
!! AATAGATTTACATAAAATTA+GGG + Chr5:69178689-69178708 None:intergenic 10.0%
!! AAATCAATGATCAAAATTAA+TGG + Chr5:69181019-69181038 None:intergenic 15.0%
!! AGAACATAAAAGTAAATAAA+AGG + Chr5:69178559-69178578 None:intergenic 15.0%
!! ATAAAACCATTATATATACA+AGG - Chr5:69179605-69179624 MsG0580027825.01.T01:intron 15.0%
!! GTAAAACAAAAATATGAATA+TGG + Chr5:69180933-69180952 None:intergenic 15.0%
!! TAAAAAAAAAACAGAAAAGA+TGG - Chr5:69179860-69179879 MsG0580027825.01.T01:intron 15.0%
!!! AAAGTTAGGTTTTTTTTTTT+TGG - Chr5:69182410-69182429 MsG0580027825.01.T01:intron 15.0%
!!! AAATCTAAAATCCAAATTAA+GGG + Chr5:69181443-69181462 None:intergenic 15.0%
!!! AATTTCATCTTTTATGTTAA+TGG - Chr5:69180191-69180210 MsG0580027825.01.T01:CDS 15.0%
!!! ATACTCTTTTATTATTACTT+CGG - Chr5:69179219-69179238 MsG0580027825.01.T01:intron 15.0%
!!! ATTTCATCTTTTATGTTAAT+GGG - Chr5:69180192-69180211 MsG0580027825.01.T01:CDS 15.0%
!!! ATTTGGATTTTAGATTTAAA+TGG - Chr5:69181446-69181465 MsG0580027825.01.T01:intron 15.0%
!!! CTTGTTATTGATTATAAAAA+CGG + Chr5:69178727-69178746 None:intergenic 15.0%
!!! TAAATCTAAAATCCAAATTA+AGG + Chr5:69181444-69181463 None:intergenic 15.0%
!! AAAGTCAAAAATTCAAAGTT+AGG - Chr5:69182396-69182415 MsG0580027825.01.T01:intron 20.0%
!! ATAAATCAAAATTGATCAAC+TGG + Chr5:69181249-69181268 None:intergenic 20.0%
!! ATGATGTGAAAAACAATAAT+GGG + Chr5:69180716-69180735 None:intergenic 20.0%
!! ATTAATAAGACTAAGTTACA+TGG + Chr5:69180896-69180915 None:intergenic 20.0%
!! TAAAGATCTTCAAAATAACA+AGG + Chr5:69181111-69181130 None:intergenic 20.0%
!! TAAATATACTTGAATCTTCT+TGG + Chr5:69180127-69180146 None:intergenic 20.0%
!! TATGATGTGAAAAACAATAA+TGG + Chr5:69180717-69180736 None:intergenic 20.0%
!! TCTAATTAAATTACCTGAAA+AGG + Chr5:69180869-69180888 None:intergenic 20.0%
!! TTAACTTAAAAAGTAACCAT+AGG + Chr5:69183228-69183247 None:intergenic 20.0%
!! TTGGTTAATTCAAACAATTT+AGG + Chr5:69180108-69180127 None:intergenic 20.0%
!! TTTATATTTAGACTAAATGC+AGG - Chr5:69182316-69182335 MsG0580027825.01.T01:intron 20.0%
!!! ATTAAGTTGTTTATCCAAAA+AGG + Chr5:69181480-69181499 None:intergenic 20.0%
!!! ATTGGCTCAAAAAATTAATA+CGG + Chr5:69182712-69182731 None:intergenic 20.0%
!!! CAATTTTGATTTATGATTGT+AGG - Chr5:69181255-69181274 MsG0580027825.01.T01:intron 20.0%
!!! TAATCAACATAACATCTTTT+TGG + Chr5:69181854-69181873 None:intergenic 20.0%
!!! TTGTCTTTATGTTATGATTT+TGG - Chr5:69183116-69183135 MsG0580027825.01.T01:intron 20.0%
!!! TTTTCATATAAGCTATAAGA+TGG - Chr5:69181545-69181564 MsG0580027825.01.T01:intron 20.0%
! AAAAAAAACAGAAAAGATGG+AGG - Chr5:69179863-69179882 MsG0580027825.01.T01:intron 25.0%
! ATCACATTTAACCATAAACA+TGG + Chr5:69181208-69181227 None:intergenic 25.0%
! ATGATCAAAATTAATGGTCT+CGG + Chr5:69181013-69181032 None:intergenic 25.0%
! ATTCGGAAAAGATATAAACA+AGG - Chr5:69182632-69182651 MsG0580027825.01.T01:intron 25.0%
! GTACTAATTCAAATTATGCT+TGG + Chr5:69183159-69183178 None:intergenic 25.0%
! GTGTATGAAAAGTCAAATTT+AGG + Chr5:69180672-69180691 None:intergenic 25.0%
! TAAAAGATGAAATTGATCGA+TGG + Chr5:69180185-69180204 None:intergenic 25.0%
! TAAAATCCAAATTAAGGGTT+TGG + Chr5:69181438-69181457 None:intergenic 25.0%
! TCAAATGAACAAATCTAAAC+AGG - Chr5:69181682-69181701 MsG0580027825.01.T01:intron 25.0%
! TCGGCTAATTAAATAACAAA+GGG + Chr5:69180585-69180604 None:intergenic 25.0%
! TGATTTGAAAATTATAGCTG+AGG - Chr5:69182906-69182925 MsG0580027825.01.T01:intron 25.0%
! TTGATTTATGATTGTAGGTT+GGG - Chr5:69181260-69181279 MsG0580027825.01.T01:intron 25.0%
!! AAATGTGATTTAACTTTGGT+TGG - Chr5:69181219-69181238 MsG0580027825.01.T01:intron 25.0%
!! AAGATGTTATGTTGATTAAG+AGG - Chr5:69181856-69181875 MsG0580027825.01.T01:intron 25.0%
!! ACTCTAGTGATTTATTTCTT+GGG - Chr5:69178427-69178446 MsG0580027825.01.T01:three_prime_UTR 25.0%
!! AGATGTTATGTTGATTAAGA+GGG - Chr5:69181857-69181876 MsG0580027825.01.T01:intron 25.0%
!! CAAACAATTTAGGATTATCA+TGG + Chr5:69180098-69180117 None:intergenic 25.0%
!! GAAACTTGTCTTTAGAAAAT+AGG - Chr5:69179010-69179029 MsG0580027825.01.T01:CDS 25.0%
!! GACTTTTCATACACTATTAT+AGG - Chr5:69180678-69180697 MsG0580027825.01.T01:intron 25.0%
!! GATATAAATTTTCATTGCCA+TGG - Chr5:69180250-69180269 MsG0580027825.01.T01:intron 25.0%
!! GGTTAAATGTGATTTAACTT+TGG - Chr5:69181215-69181234 MsG0580027825.01.T01:intron 25.0%
!! TTGCTTTGTAAGTTATTTCA+TGG - Chr5:69180953-69180972 MsG0580027825.01.T01:intron 25.0%
!! TTTGATTTATGATTGTAGGT+TGG - Chr5:69181259-69181278 MsG0580027825.01.T01:intron 25.0%
!!! AAACATAAAGTTCTAGGTTT+AGG - Chr5:69179035-69179054 MsG0580027825.01.T01:CDS 25.0%
!!! AACATAAAGTTCTAGGTTTA+GGG - Chr5:69179036-69179055 MsG0580027825.01.T01:CDS 25.0%
!!! ATATAATAATAAAAGCGCCT+TGG + Chr5:69179104-69179123 None:intergenic 25.0%
!!! ATGTATTGCTTTTTTGTGTT+TGG - Chr5:69181135-69181154 MsG0580027825.01.T01:intron 25.0%
!!! TATAATAATAAAAGCGCCTT+GGG + Chr5:69179103-69179122 None:intergenic 25.0%
!!! TCAATTGTTTTTTGCAAAGA+AGG - Chr5:69182128-69182147 MsG0580027825.01.T01:intron 25.0%
!!! TGGTTTTATAATAAGTGCAT+TGG + Chr5:69179594-69179613 None:intergenic 25.0%
!!! TGTATTGCTTTTTTGTGTTT+GGG - Chr5:69181136-69181155 MsG0580027825.01.T01:intron 25.0%
AACTCTACTCTAATCATTGT+TGG - Chr5:69179162-69179181 MsG0580027825.01.T01:intron 30.0%
AATAAGCTGAAAACAGCTTA+TGG - Chr5:69181598-69181617 MsG0580027825.01.T01:intron 30.0%
AATGATTACATACGTGGAAT+GGG - Chr5:69180643-69180662 MsG0580027825.01.T01:intron 30.0%
ACAACAACAGTGAGATTAAT+TGG + Chr5:69180295-69180314 None:intergenic 30.0%
ACAATGAATGATTACATACG+TGG - Chr5:69180637-69180656 MsG0580027825.01.T01:intron 30.0%
ACGTATGTAATCATTCATTG+TGG + Chr5:69180638-69180657 None:intergenic 30.0%
AGAACAAGTGAAATTAGACA+AGG - Chr5:69178840-69178859 MsG0580027825.01.T01:intron 30.0%
AGAACTAAGAACCATGTTTA+TGG - Chr5:69181194-69181213 MsG0580027825.01.T01:intron 30.0%
AGTATAGTACCTCAATCAAA+AGG + Chr5:69183064-69183083 None:intergenic 30.0%
ATCGATGGCTGTAAAAAATA+TGG + Chr5:69180170-69180189 None:intergenic 30.0%
ATTAAAGTTTCGTGCTTCAA+GGG - Chr5:69178900-69178919 MsG0580027825.01.T01:CDS 30.0%
ATTGAATTTATCTGATGCTG+AGG - Chr5:69183315-69183334 MsG0580027825.01.T01:CDS 30.0%
ATTTAATTAGCCGAGAAATC+AGG - Chr5:69180591-69180610 MsG0580027825.01.T01:intron 30.0%
CACACACCTTGTATATATAA+TGG + Chr5:69179614-69179633 None:intergenic 30.0%
CATCAAAGTTATCAAAGTCA+TGG - Chr5:69178238-69178257 MsG0580027825.01.T01:three_prime_UTR 30.0%
CGGCTAATTAAATAACAAAG+GGG + Chr5:69180584-69180603 None:intergenic 30.0%
CTATTGCATATATCTGATCT+TGG - Chr5:69182288-69182307 MsG0580027825.01.T01:intron 30.0%
CTCGGCTAATTAAATAACAA+AGG + Chr5:69180586-69180605 None:intergenic 30.0%
CTGATTAAAACCTGACTTTA+GGG - Chr5:69181828-69181847 MsG0580027825.01.T01:intron 30.0%
GAAAGAATGTTGAATTGTGT+TGG + Chr5:69179515-69179534 None:intergenic 30.0%
GAACAAGTGAAATTAGACAA+GGG - Chr5:69178841-69178860 MsG0580027825.01.T01:intron 30.0%
GCACATATTATTCTTGTTAC+AGG + Chr5:69181931-69181950 None:intergenic 30.0%
GCTGTAAAAAATATGGAGAA+AGG + Chr5:69180163-69180182 None:intergenic 30.0%
GTATAGTACCTCAATCAAAA+GGG + Chr5:69183063-69183082 None:intergenic 30.0%
GTGATCAAAATGACATTTGT+TGG - Chr5:69180485-69180504 MsG0580027825.01.T01:intron 30.0%
GTGTTAAAAAAGAGTAGAGA+GGG + Chr5:69180403-69180422 None:intergenic 30.0%
TAGGTCAAACATAAAGTTCT+AGG - Chr5:69179029-69179048 MsG0580027825.01.T01:CDS 30.0%
TCTGATTAAAACCTGACTTT+AGG - Chr5:69181827-69181846 MsG0580027825.01.T01:intron 30.0%
TGATGAGAGTAATTCTTAAG+TGG + Chr5:69180519-69180538 None:intergenic 30.0%
TGATTTATGATTGTAGGTTG+GGG - Chr5:69181261-69181280 MsG0580027825.01.T01:intron 30.0%
TGTGTTAAAAAAGAGTAGAG+AGG + Chr5:69180404-69180423 None:intergenic 30.0%
TGTTACACAAGAAAATCCAT+GGG + Chr5:69178408-69178427 None:intergenic 30.0%
TTATGACGAAGATCTCATAA+AGG - Chr5:69181368-69181387 MsG0580027825.01.T01:intron 30.0%
! AAAATGCTTCTGGCAATTTT+AGG - Chr5:69182997-69183016 MsG0580027825.01.T01:intron 30.0%
! ACAAGGAAAAGCATAATGAT+TGG + Chr5:69181094-69181113 None:intergenic 30.0%
! AGAGTAGAGTTCAAGTTAAA+AGG + Chr5:69179153-69179172 None:intergenic 30.0%
! ATGTTAATGGGTGAAAGAAA+AGG - Chr5:69180204-69180223 MsG0580027825.01.T01:CDS 30.0%
! CACTCTAGTGATTTATTTCT+TGG - Chr5:69178426-69178445 MsG0580027825.01.T01:three_prime_UTR 30.0%
! CATGACTTTGATAACTTTGA+TGG + Chr5:69178240-69178259 None:intergenic 30.0%
! CTCTAGTGATTTATTTCTTG+GGG - Chr5:69178428-69178447 MsG0580027825.01.T01:three_prime_UTR 30.0%
! GATGTTATGTTGATTAAGAG+GGG - Chr5:69181858-69181877 MsG0580027825.01.T01:intron 30.0%
! GTCTATTCATCTTTTGTTCT+TGG - Chr5:69178494-69178513 MsG0580027825.01.T01:exon 30.0%
! TAGAGTTCAAGTTAAAAGGT+TGG + Chr5:69179149-69179168 None:intergenic 30.0%
! TTGAATTTTCTCTTCATCAG+AGG - Chr5:69181983-69182002 MsG0580027825.01.T01:intron 30.0%
!! AAAAGAGTATTATTCCGACA+GGG + Chr5:69179209-69179228 None:intergenic 30.0%
!! AGTCAGGTTTTAATCAGAAT+TGG + Chr5:69181825-69181844 None:intergenic 30.0%
!! ATTTGTGACACTTTGAGTTT+TGG - Chr5:69181781-69181800 MsG0580027825.01.T01:intron 30.0%
!! ATTTTGATCACAACCAATCA+AGG + Chr5:69180476-69180495 None:intergenic 30.0%
!! GTCAGGTTTTAATCAGAATT+GGG + Chr5:69181824-69181843 None:intergenic 30.0%
!! TAAAAGAGTATTATTCCGAC+AGG + Chr5:69179210-69179229 None:intergenic 30.0%
!!! ATTTTTTGAGCCAATGTTGT+AGG - Chr5:69182717-69182736 MsG0580027825.01.T01:intron 30.0%
!!! CTTTTTTAGTGTTTCAGAAC+TGG + Chr5:69179478-69179497 None:intergenic 30.0%
AAAACAGAAAAGATGGAGGA+TGG - Chr5:69179867-69179886 MsG0580027825.01.T01:intron 35.0%
AAAAGAGTAGAGAGGGAAAA+TGG + Chr5:69180396-69180415 None:intergenic 35.0%
AAAAGGACATGGAGAAAAAG+GGG - Chr5:69180221-69180240 MsG0580027825.01.T01:CDS 35.0%
AAAGAGTAGAGAGGGAAAAT+GGG + Chr5:69180395-69180414 None:intergenic 35.0%
AAATCACGATAGTGAACCTA+TGG - Chr5:69183209-69183228 MsG0580027825.01.T01:CDS 35.0%
AAGAACTAACCAGAGGTAAT+AGG + Chr5:69182446-69182465 None:intergenic 35.0%
AAGTATATACAGGTACATCC+TGG + Chr5:69181742-69181761 None:intergenic 35.0%
AATCACTACAAGGATGCATT+CGG - Chr5:69182615-69182634 MsG0580027825.01.T01:intron 35.0%
AATCAGTCAGTAGTACCTTA+CGG + Chr5:69182218-69182237 None:intergenic 35.0%
AATTACCTGAAAAGGCTTTG+CGG + Chr5:69180861-69180880 None:intergenic 35.0%
AATTATGGAATCTCACTCAG+TGG - Chr5:69181710-69181729 MsG0580027825.01.T01:intron 35.0%
AGAAAAGGACATGGAGAAAA+AGG - Chr5:69180219-69180238 MsG0580027825.01.T01:CDS 35.0%
AGACCTGATTATATCGATCT+TGG - Chr5:69181293-69181312 MsG0580027825.01.T01:intron 35.0%
AGATGAATAGACATGTCTGA+TGG + Chr5:69178486-69178505 None:intergenic 35.0%
ATAACGATGACGATTTCATC+AGG - Chr5:69182550-69182569 MsG0580027825.01.T01:intron 35.0%
ATTTCATGAGACAAAGTCAG+TGG + Chr5:69180037-69180056 None:intergenic 35.0%
CAAACGAAGCAACTAAAAGA+TGG - Chr5:69182055-69182074 MsG0580027825.01.T01:intron 35.0%
CACATGTTATCCTGATTTCT+CGG + Chr5:69180604-69180623 None:intergenic 35.0%
CACGAAACTTTAATGTCTCA+AGG + Chr5:69178894-69178913 None:intergenic 35.0%
CAGTTGATCTTAGTAAAGAC+AGG + Chr5:69182771-69182790 None:intergenic 35.0%
CATATCGGAAACAACTATGA+AGG - Chr5:69179990-69180009 MsG0580027825.01.T01:intron 35.0%
CATTAAAGTTTCGTGCTTCA+AGG - Chr5:69178899-69178918 MsG0580027825.01.T01:CDS 35.0%
CGATATAATCAGGTCTTCAT+TGG + Chr5:69181289-69181308 None:intergenic 35.0%
CTTTGCAAAGATAATTCGTG+AGG - Chr5:69182819-69182838 MsG0580027825.01.T01:intron 35.0%
GAAAAGGACATGGAGAAAAA+GGG - Chr5:69180220-69180239 MsG0580027825.01.T01:CDS 35.0%
GAATGATTACATACGTGGAA+TGG - Chr5:69180642-69180661 MsG0580027825.01.T01:intron 35.0%
GACCTGATTATATCGATCTT+GGG - Chr5:69181294-69181313 MsG0580027825.01.T01:intron 35.0%
GATGGTTTCTTAAGTTATCC+TGG - Chr5:69181563-69181582 MsG0580027825.01.T01:intron 35.0%
GTGTTACACAAGAAAATCCA+TGG + Chr5:69178409-69178428 None:intergenic 35.0%
TAAAATTAGGGTTCGAGACT+TGG + Chr5:69178677-69178696 None:intergenic 35.0%
TAGCAATCAACCATGAGAAT+AGG - Chr5:69178929-69178948 MsG0580027825.01.T01:CDS 35.0%
TCATCAGAGAAAGTCTTAGT+TGG - Chr5:69179763-69179782 MsG0580027825.01.T01:intron 35.0%
TCTAAACAGGCTTCGAATTA+TGG - Chr5:69181695-69181714 MsG0580027825.01.T01:intron 35.0%
TCTTTCAGATCCTACAACAT+TGG + Chr5:69182730-69182749 None:intergenic 35.0%
TGACTATGAGAAAATGCTTC+TGG - Chr5:69182987-69183006 MsG0580027825.01.T01:intron 35.0%
TTATATCGATCTTGGGTCAT+CGG - Chr5:69181301-69181320 MsG0580027825.01.T01:intron 35.0%
TTGAATTCATAACTCCCTGT+CGG - Chr5:69179192-69179211 MsG0580027825.01.T01:intron 35.0%
! AAAGACAGGTACTCATCTTT+TGG + Chr5:69182757-69182776 None:intergenic 35.0%
! AAGCATTTTCTCATAGTCAC+CGG + Chr5:69182986-69183005 None:intergenic 35.0%
! ACCTGACTACTTATGTTTTG+TGG - Chr5:69179362-69179381 MsG0580027825.01.T01:CDS 35.0%
! ATAACCTTGTTTCTCTTCCA+TGG + Chr5:69180270-69180289 None:intergenic 35.0%
! CCTGACTACTTATGTTTTGT+GGG - Chr5:69179363-69179382 MsG0580027825.01.T01:CDS 35.0%
! TATCTTTGCAAAGTACCTCT+CGG + Chr5:69182812-69182831 None:intergenic 35.0%
! TGCAAGTTGTATTTTCAGCA+TGG - Chr5:69183093-69183112 MsG0580027825.01.T01:intron 35.0%
! TGTGTTTGGGATTGAAGATT+CGG - Chr5:69181149-69181168 MsG0580027825.01.T01:intron 35.0%
!! AAAGTTCTAGGTTTAGGGTT+TGG - Chr5:69179041-69179060 MsG0580027825.01.T01:CDS 35.0%
!! AGAGAGAGAGCACTTTATAT+TGG + Chr5:69179394-69179413 None:intergenic 35.0%
!! AGTGTTTTCCCTTTTGATTG+AGG - Chr5:69183052-69183071 MsG0580027825.01.T01:intron 35.0%
!! ATGTTTTTACCTAAAGCCCA+TGG - Chr5:69178389-69178408 MsG0580027825.01.T01:three_prime_UTR 35.0%
!! TGCTACTTTGAATCACTACA+AGG - Chr5:69182605-69182624 MsG0580027825.01.T01:intron 35.0%
!! TTATAGCTGAGGAGTATCAA+AGG - Chr5:69182917-69182936 MsG0580027825.01.T01:intron 35.0%
!!! AAATGGATTGCGATCCTTTT+TGG - Chr5:69181463-69181482 MsG0580027825.01.T01:intron 35.0%
!!! GTTATGATTTTGGAAGCATC+TGG - Chr5:69183126-69183145 MsG0580027825.01.T01:intron 35.0%
!!! TCATCAGGATTTTAGCTACA+AGG - Chr5:69182565-69182584 MsG0580027825.01.T01:intron 35.0%
AACATAGCAAAACAGACAGC+TGG + Chr5:69178374-69178393 None:intergenic 40.0%
AAGATCAACTGTCAAGTGCT+TGG - Chr5:69182780-69182799 MsG0580027825.01.T01:intron 40.0%
AAGATGGACATCAAGCAATC+AGG - Chr5:69182071-69182090 MsG0580027825.01.T01:intron 40.0%
AAGTTATCCTGGAGAGCTTA+TGG - Chr5:69181574-69181593 MsG0580027825.01.T01:intron 40.0%
AATCAGGATAACATGTGACG+TGG - Chr5:69180607-69180626 MsG0580027825.01.T01:intron 40.0%
ACTGGTAAGCTCTTTGTTCA+GGG + Chr5:69181394-69181413 None:intergenic 40.0%
AGGTCTCATTGCACTTCTAA+GGG + Chr5:69179346-69179365 None:intergenic 40.0%
ATGACGAACCAATAATCCCA+AGG - Chr5:69179084-69179103 MsG0580027825.01.T01:intron 40.0%
ATGGGTGAAAGAAAAGGACA+TGG - Chr5:69180210-69180229 MsG0580027825.01.T01:CDS 40.0%
ATTGCCATGGAAGAGAAACA+AGG - Chr5:69180263-69180282 MsG0580027825.01.T01:intron 40.0%
CAAAAATGCATCACGTTCAG+CGG + Chr5:69182034-69182053 None:intergenic 40.0%
CAAGAAAATCCATGGGCTTT+AGG + Chr5:69178401-69178420 None:intergenic 40.0%
CCCACAAAACATAAGTAGTC+AGG + Chr5:69179366-69179385 None:intergenic 40.0%
CCTCAGAAAGAGAGAGAAAA+TGG - Chr5:69179835-69179854 MsG0580027825.01.T01:intron 40.0%
CTTATTTCCATAAGCTCTCC+AGG + Chr5:69181584-69181603 None:intergenic 40.0%
GACCCAAGATCGATATAATC+AGG + Chr5:69181299-69181318 None:intergenic 40.0%
GAGTAGACTCTTCTTGTCTT+GGG - Chr5:69178614-69178633 MsG0580027825.01.T01:CDS 40.0%
GCACGAGAAGATTACAAAGA+AGG - Chr5:69182524-69182543 MsG0580027825.01.T01:intron 40.0%
GCGCTCATCTAAGTATATAC+AGG + Chr5:69181752-69181771 None:intergenic 40.0%
TAAGGGCCAAACCCTTAATT+TGG - Chr5:69181429-69181448 MsG0580027825.01.T01:intron 40.0%
TAGCCTATCACATCTCCTTT+CGG + Chr5:69178986-69179005 None:intergenic 40.0%
TAGCTAACAAGTTTATGCGC+AGG + Chr5:69182241-69182260 None:intergenic 40.0%
TCCAAACGTTCAAGCATGAT+GGG + Chr5:69179269-69179288 None:intergenic 40.0%
TCTGAGCAAAAGCAGCAAAA+GGG + Chr5:69178326-69178345 None:intergenic 40.0%
TCTTCTTGTCTTGGGATTGT+TGG - Chr5:69178622-69178641 MsG0580027825.01.T01:CDS 40.0%
TGAGTAGACTCTTCTTGTCT+TGG - Chr5:69178613-69178632 MsG0580027825.01.T01:CDS 40.0%
TGATGAAGGAGCTCTTACAA+GGG - Chr5:69182861-69182880 MsG0580027825.01.T01:intron 40.0%
TGTGACCAAAGGCAATAAGT+TGG + Chr5:69179797-69179816 None:intergenic 40.0%
TTAGCTGACCTCAAAATCAC+TGG + Chr5:69181412-69181431 None:intergenic 40.0%
! AGAGCTTACCAGTGATTTTG+AGG - Chr5:69181401-69181420 MsG0580027825.01.T01:intron 40.0%
! ATCAAGCAATCAGGTTCTAG+TGG - Chr5:69182080-69182099 MsG0580027825.01.T01:intron 40.0%
! ATCAGAGGCTTGTTCATCTT+TGG - Chr5:69181998-69182017 MsG0580027825.01.T01:intron 40.0%
! ATCTTTGCAAAGTACCTCTC+GGG + Chr5:69182811-69182830 None:intergenic 40.0%
! ATGGTGAGAGATCAAGTTGT+GGG + Chr5:69180079-69180098 None:intergenic 40.0%
! CCATTTTCTCTCTCTTTCTG+AGG + Chr5:69179838-69179857 None:intergenic 40.0%
! GACTACTTATGTTTTGTGGG+AGG - Chr5:69179366-69179385 MsG0580027825.01.T01:CDS 40.0%
! GTTAGTTCTTACCGCTATGA+GGG - Chr5:69182456-69182475 MsG0580027825.01.T01:intron 40.0%
! GTTCGAGACTTGGTTTGATA+GGG + Chr5:69178667-69178686 None:intergenic 40.0%
!! ATCTTTTTGGCCCTAAAGTC+AGG + Chr5:69181841-69181860 None:intergenic 40.0%
!! CTTTGATAACTTTGATGGCG+TGG + Chr5:69178235-69178254 None:intergenic 40.0%
!! GTTTAGGGTTTGGTTTGTGA+AGG - Chr5:69179051-69179070 MsG0580027825.01.T01:CDS 40.0%
!! TAAAAGCGCCTTGGGATTAT+TGG + Chr5:69179095-69179114 None:intergenic 40.0%
!! TTGGGATTATTGGTTCGTCA+TGG + Chr5:69179085-69179104 None:intergenic 40.0%
!!! AGTGATTTTGAGGTCAGCTA+AGG - Chr5:69181411-69181430 MsG0580027825.01.T01:intron 40.0%
!!! GTGATTTTGAGGTCAGCTAA+GGG - Chr5:69181412-69181431 MsG0580027825.01.T01:intron 40.0%
AAAACAGACAGCTGGAACCT+TGG + Chr5:69178366-69178385 None:intergenic 45.0%
AAACAGACAGCTGGAACCTT+GGG + Chr5:69178365-69178384 None:intergenic 45.0%
AACAAGCGAGGAACTGATGA+AGG - Chr5:69182847-69182866 MsG0580027825.01.T01:intron 45.0%
AGACCGAAAGGAGATGTGAT+AGG - Chr5:69178980-69178999 MsG0580027825.01.T01:CDS 45.0%
ATCAACCATGAGAATAGGCG+TGG - Chr5:69178934-69178953 MsG0580027825.01.T01:CDS 45.0%
CACTGGTAAGCTCTTTGTTC+AGG + Chr5:69181395-69181414 None:intergenic 45.0%
CAGGTCTCATTGCACTTCTA+AGG + Chr5:69179347-69179366 None:intergenic 45.0%
CCAAACGTTCAAGCATGATG+GGG + Chr5:69179268-69179287 None:intergenic 45.0%
CGTGACCAACTTATTGCCTT+TGG - Chr5:69179789-69179808 MsG0580027825.01.T01:intron 45.0%
CTCTGAGCAAAAGCAGCAAA+AGG + Chr5:69178327-69178346 None:intergenic 45.0%
CTGATGAAGGAGCTCTTACA+AGG - Chr5:69182860-69182879 MsG0580027825.01.T01:intron 45.0%
CTTGACTATAGCAAAAGCCG+AGG - Chr5:69182491-69182510 MsG0580027825.01.T01:intron 45.0%
CTTGTGTGTCATGCCTTGAT+TGG - Chr5:69180460-69180479 MsG0580027825.01.T01:intron 45.0%
GCTTGTTCATCTTTGGACAC+TGG - Chr5:69182005-69182024 MsG0580027825.01.T01:intron 45.0%
GTCATCGGAATGAGGTTCAA+AGG - Chr5:69181316-69181335 MsG0580027825.01.T01:intron 45.0%
GTCCAAACGTTCAAGCATGA+TGG + Chr5:69179270-69179289 None:intergenic 45.0%
GTCTGCAACGATGGTCATAT+CGG - Chr5:69179975-69179994 MsG0580027825.01.T01:intron 45.0%
TAGCGGTAAGAACTAACCAG+AGG + Chr5:69182453-69182472 None:intergenic 45.0%
TCGGAATGAGGTTCAAAGGA+AGG - Chr5:69181320-69181339 MsG0580027825.01.T01:intron 45.0%
TGACTTCATCTCCCTCATAG+CGG + Chr5:69182470-69182489 None:intergenic 45.0%
TGGTTAGAGTCTGCATTCTG+CGG + Chr5:69179458-69179477 None:intergenic 45.0%
TTGAACGTTTGGACGTCTCT+TGG - Chr5:69179276-69179295 MsG0580027825.01.T01:intron 45.0%
! CATGGTGAGAGATCAAGTTG+TGG + Chr5:69180080-69180099 None:intergenic 45.0%
! CATTTTCTCATAGTCACCGG+TGG + Chr5:69182983-69183002 None:intergenic 45.0%
! CGCTGAACGTGATGCATTTT+TGG - Chr5:69182032-69182051 MsG0580027825.01.T01:intron 45.0%
! GACTTGGTTTGATAGGGAGT+AGG + Chr5:69178661-69178680 None:intergenic 45.0%
! GGTTAGTTCTTACCGCTATG+AGG - Chr5:69182455-69182474 MsG0580027825.01.T01:intron 45.0%
! GGTTCGAGACTTGGTTTGAT+AGG + Chr5:69178668-69178687 None:intergenic 45.0%
! TGGTGAGAGATCAAGTTGTG+GGG + Chr5:69180078-69180097 None:intergenic 45.0%
! TGTCTAGCTCCTATTACCTC+TGG - Chr5:69182434-69182453 MsG0580027825.01.T01:intron 45.0%
! TGTTGGTTGGTTGTGACCAA+AGG + Chr5:69179808-69179827 None:intergenic 45.0%
!! CTCGTGCAGTATTTTTGCCT+CGG + Chr5:69182511-69182530 None:intergenic 45.0%
!! CTTTCTGAGGTGTCAAGTGT+TGG + Chr5:69179825-69179844 None:intergenic 45.0%
!! TAGCTGAGGAGTATCAAAGG+AGG - Chr5:69182920-69182939 MsG0580027825.01.T01:intron 45.0%
!!! TTTTGCTCAGAGTGTTGGCA+CGG - Chr5:69178335-69178354 MsG0580027825.01.T01:three_prime_UTR 45.0%
AACGTTTGGACGTCTCTTGG+AGG - Chr5:69179279-69179298 MsG0580027825.01.T01:intron 50.0%
ACACACTCACTGAGACCGAA+AGG - Chr5:69178968-69178987 MsG0580027825.01.T01:CDS 50.0%
AGACAGGAGGAAGAGGATGA+GGG + Chr5:69180819-69180838 None:intergenic 50.0%
AGCAACCACGCCTATTCTCA+TGG + Chr5:69178942-69178961 None:intergenic 50.0%
CATGAATGCCACACAGAGAG+AGG + Chr5:69180368-69180387 None:intergenic 50.0%
CCCCATCATGCTTGAACGTT+TGG - Chr5:69179265-69179284 MsG0580027825.01.T01:intron 50.0%
CTCTCTCTGTGTGGCATTCA+TGG - Chr5:69180366-69180385 MsG0580027825.01.T01:intron 50.0%
GAACAGCATCCCTCTTGATC+GGG - Chr5:69182942-69182961 MsG0580027825.01.T01:intron 50.0%
GATCTTGGGTCATCGGAATG+AGG - Chr5:69181308-69181327 MsG0580027825.01.T01:intron 50.0%
GGAACAGCATCCCTCTTGAT+CGG - Chr5:69182941-69182960 MsG0580027825.01.T01:intron 50.0%
GGGGTAAATCTGCAAGTGCA+CGG + Chr5:69179249-69179268 None:intergenic 50.0%
GTTGTGGGGGAAACTGGAAT+CGG + Chr5:69180064-69180083 None:intergenic 50.0%
TCATGGCCAAGTCAGAGAGT+TGG - Chr5:69178255-69178274 MsG0580027825.01.T01:three_prime_UTR 50.0%
TCTTGATCGGGCCATTGTCA+AGG - Chr5:69182954-69182973 MsG0580027825.01.T01:intron 50.0%
TGAAGGAGCTCTTACAAGGG+TGG - Chr5:69182864-69182883 MsG0580027825.01.T01:intron 50.0%
TGACAATGGCCCGATCAAGA+GGG + Chr5:69182954-69182973 None:intergenic 50.0%
TGATGGTCAGTCTGCAACGA+TGG - Chr5:69179966-69179985 MsG0580027825.01.T01:intron 50.0%
TGTTCAACGTCATCGGAGAC+AGG + Chr5:69180835-69180854 None:intergenic 50.0%
TTGACAATGGCCCGATCAAG+AGG + Chr5:69182955-69182974 None:intergenic 50.0%
! GATCAAGTTGTGGGGGAAAC+TGG + Chr5:69180070-69180089 None:intergenic 50.0%
! GGTGAGAGATCAAGTTGTGG+GGG + Chr5:69180077-69180096 None:intergenic 50.0%
!! AGTGCTTGGTTTTTCCCGAG+AGG - Chr5:69182794-69182813 MsG0580027825.01.T01:intron 50.0%
!! CTGAGGTGTCAAGTGTTGGT+TGG + Chr5:69179821-69179840 None:intergenic 50.0%
!!! GCTGCTTTTGCTCAGAGTGT+TGG - Chr5:69178330-69178349 MsG0580027825.01.T01:three_prime_UTR 50.0%
ACCGGTGGTGTCCTTGACAA+TGG + Chr5:69182968-69182987 None:intergenic 55.0%
ACTGCTTCTCCCTCGATAGC+AGG + Chr5:69179896-69179915 None:intergenic 55.0%
AGACAGCTGGAACCTTGGGA+TGG + Chr5:69178361-69178380 None:intergenic 55.0%
AGGAGCTCTTACAAGGGTGG+TGG - Chr5:69182867-69182886 MsG0580027825.01.T01:intron 55.0%
AGGATGGATGCCTGCTATCG+AGG - Chr5:69179883-69179902 MsG0580027825.01.T01:intron 55.0%
CGTGAGGCTATCAACAAGCG+AGG - Chr5:69182835-69182854 MsG0580027825.01.T01:intron 55.0%
CTCACTCAGTGGTAGACTCC+AGG - Chr5:69181721-69181740 MsG0580027825.01.T01:intron 55.0%
GAATGCCACACAGAGAGAGG+AGG + Chr5:69180365-69180384 None:intergenic 55.0%
GAGACAGGAGGAAGAGGATG+AGG + Chr5:69180820-69180839 None:intergenic 55.0%
GAGCGTGATGCGCAACTGTT+TGG - Chr5:69181880-69181899 MsG0580027825.01.T01:intron 55.0%
GCCAAGTCAGAGAGTTGGCA+CGG - Chr5:69178260-69178279 MsG0580027825.01.T01:three_prime_UTR 55.0%
GCCATTGTCAAGGACACCAC+CGG - Chr5:69182964-69182983 MsG0580027825.01.T01:intron 55.0%
GCGGAGCTGTTCAACGTCAT+CGG + Chr5:69180842-69180861 None:intergenic 55.0%
GGATGGATGCCTGCTATCGA+GGG - Chr5:69179884-69179903 MsG0580027825.01.T01:intron 55.0%
TCAACGTCATCGGAGACAGG+AGG + Chr5:69180832-69180851 None:intergenic 55.0%
TCATCGGAGACAGGAGGAAG+AGG + Chr5:69180826-69180845 None:intergenic 55.0%
TGACCTCGTCGGAAGAACAG+CGG + Chr5:69180338-69180357 None:intergenic 55.0%
! AGCGGCGATGATGATGACAG+TGG + Chr5:69180320-69180339 None:intergenic 55.0%
! CAGCTCCGCAAAGCCTTTTC+AGG - Chr5:69180853-69180872 MsG0580027825.01.T01:intron 55.0%
!! GAAGGCGTCGACGATGACAA+CGG - Chr5:69180008-69180027 MsG0580027825.01.T01:intron 55.0%
ACCGTCCTCCTCTCTCTGTG+TGG - Chr5:69180357-69180376 MsG0580027825.01.T01:intron 60.0%
GCCACACAGAGAGAGGAGGA+CGG + Chr5:69180361-69180380 None:intergenic 60.0%
GCCGTGCCAACTCTCTGACT+TGG + Chr5:69178264-69178283 None:intergenic 60.0%
GTGTGCACCAATGACCACGC+CGG - Chr5:69179914-69179933 MsG0580027825.01.T01:intron 60.0%
AGACGGAGGCGGCGACATGA+TGG - Chr5:69179949-69179968 MsG0580027825.01.T01:intron 65.0%
GAGGAGGACGGTGACCTCGT+CGG + Chr5:69180349-69180368 None:intergenic 65.0%
TCGCCGCTGTTCTTCCGACG+AGG - Chr5:69180332-69180351 MsG0580027825.01.T01:intron 65.0%
! GTGTTGGCACGGCCATCCCA+AGG - Chr5:69178346-69178365 MsG0580027825.01.T01:intron 65.0%
!! GGCGTCGACGATGACAACGG+CGG - Chr5:69180011-69180030 MsG0580027825.01.T01:intron 65.0%
GGCACGGTCGTGCGCAACTG+TGG - Chr5:69178297-69178316 MsG0580027825.01.T01:three_prime_UTR 70.0%
GTCGGGTCCGGCGTGGTCAT+TGG + Chr5:69179924-69179943 None:intergenic 70.0%
GTTGCGCACGACCGTGCCAC+TGG + Chr5:69178295-69178314 None:intergenic 70.0%
TCCGTCTCCGTCGTCGGGTC+CGG + Chr5:69179936-69179955 None:intergenic 70.0%
! CGACCGTGCCACTGGCAGCA+CGG + Chr5:69178287-69178306 None:intergenic 70.0%
! GACCGTGCCACTGGCAGCAC+GGG + Chr5:69178286-69178305 None:intergenic 70.0%
CCCGACGACGGAGACGGAGG+CGG - Chr5:69179938-69179957 MsG0580027825.01.T01:intron 75.0%
CCGCCTCCGTCTCCGTCGTC+GGG + Chr5:69179941-69179960 None:intergenic 75.0%
GACCACGCCGGACCCGACGA+CGG - Chr5:69179926-69179945 MsG0580027825.01.T01:intron 75.0%
GCCGCCTCCGTCTCCGTCGT+CGG + Chr5:69179942-69179961 None:intergenic 75.0%
GCCGGACCCGACGACGGAGA+CGG - Chr5:69179932-69179951 MsG0580027825.01.T01:intron 75.0%
GGACCCGACGACGGAGACGG+AGG - Chr5:69179935-69179954 MsG0580027825.01.T01:intron 75.0%
GGCCCGTGCTGCCAGTGGCA+CGG - Chr5:69178281-69178300 MsG0580027825.01.T01:three_prime_UTR 75.0%
GGCGTGGCCACGCCGTTGTC+CGG + Chr5:69178219-69178238 None:intergenic 75.0%
! CTCCGTCGTCGGGTCCGGCG+TGG + Chr5:69179931-69179950 None:intergenic 80.0%
! GGCACGGCCCGTGCTGCCAG+TGG - Chr5:69178276-69178295 MsG0580027825.01.T01:three_prime_UTR 80.0%
! GGTCGCGCCGGACAACGGCG+TGG - Chr5:69178209-69178228 MsG0580027825.01.T01:three_prime_UTR 80.0%
Chromosome Type Strat End Strand Name
Chr5 gene 69178207 69183335 69178207 ID=MsG0580027825.01;Name=MsG0580027825.01
Chr5 mRNA 69178207 69183335 69178207 ID=MsG0580027825.01.T01;Parent=MsG0580027825.01;Name=MsG0580027825.01.T01;_AED=0.42;_eAED=0.42;_QI=0|0.8|0.83|0.83|0.8|0.66|6|279|352
Chr5 exon 69178207 69178354 69178207 ID=MsG0580027825.01.T01:exon:4279;Parent=MsG0580027825.01.T01
Chr5 exon 69178376 69178803 69178376 ID=MsG0580027825.01.T01:exon:4278;Parent=MsG0580027825.01.T01
Chr5 CDS 69183152 69183335 69183152 ID=MsG0580027825.01.T01:cds;Parent=MsG0580027825.01.T01
Chr5 CDS 69180120 69180265 69180120 ID=MsG0580027825.01.T01:cds;Parent=MsG0580027825.01.T01
Chr5 CDS 69179321 69179539 69179321 ID=MsG0580027825.01.T01:cds;Parent=MsG0580027825.01.T01
Chr5 CDS 69178889 69179101 69178889 ID=MsG0580027825.01.T01:cds;Parent=MsG0580027825.01.T01
Chr5 CDS 69178507 69178803 69178507 ID=MsG0580027825.01.T01:cds;Parent=MsG0580027825.01.T01
Chr5 three_prime_UTR 69178376 69178506 69178376 ID=MsG0580027825.01.T01:three_prime_utr;Parent=MsG0580027825.01.T01
Chr5 three_prime_UTR 69178207 69178354 69178207 ID=MsG0580027825.01.T01:three_prime_utr;Parent=MsG0580027825.01.T01
Chr5 mRNA 69178241 69183335 69178241 ID=MsG0580027825.01.T02;Parent=MsG0580027825.01;Name=MsG0580027825.01.T02;_AED=0.42;_eAED=0.42;_QI=0|0.75|0.8|0.8|1|1|5|266|352
Chr5 exon 69178241 69178803 69178241 ID=MsG0580027825.01.T02:exon:4280;Parent=MsG0580027825.01.T02
Chr5 CDS 69183152 69183335 69183152 ID=MsG0580027825.01.T02:cds;Parent=MsG0580027825.01.T02
Chr5 CDS 69180120 69180265 69180120 ID=MsG0580027825.01.T02:cds;Parent=MsG0580027825.01.T02
Chr5 CDS 69179321 69179539 69179321 ID=MsG0580027825.01.T02:cds;Parent=MsG0580027825.01.T02
Chr5 CDS 69178889 69179101 69178889 ID=MsG0580027825.01.T02:cds;Parent=MsG0580027825.01.T02
Chr5 CDS 69178507 69178803 69178507 ID=MsG0580027825.01.T02:cds;Parent=MsG0580027825.01.T02
Chr5 three_prime_UTR 69178241 69178506 69178241 ID=MsG0580027825.01.T02:three_prime_utr;Parent=MsG0580027825.01.T02
Gene Sequence

>MsG0580027825.01.T02

ATGGTCGCGCCGGACAACGGCGTGGCCACGCCATCAAAGTTATCAAAGTCATGGCCAAGTCAGAGAGTTGGCACGGCCCGTGCTGCCAGTGGCACGGTCGTGCGCAACTGTGGAAGCCCTTTTGCTGCTTTTGCTCAGAGTGTTGGCACGGCCATCCCAAGGTTCCAGCTGTCTGTTTTGCTATGTTGGGGAACCAATGAAGACCTGATTATATCGATCTTGGGTCATCGGAATGAGGTTCAAAGGAAGGTTATTCGAGAAGCTTACGCTAAGACTTATGACGAAGATCTCATAAAGGCCCTGAACAAAGAGCTTACCAGTGATTTTGAGAGGCTTGTTCATCTTTGGACACTGGAATCCGCTGAACGTGATGCATTTTTGGCAAACGAAGCAACTAAAAGATGGACATCAAGCAATCAGGTTCTAGTGGAATTAGCTTGCACTAGATCTTCTGATCAATTGTTTTTTGCAAAGAAGGCTTATCATGCTCTTCATAAGAAGTCTCTTGAAGAAGATGTTGCTTATCACACAACTGGAGACTTCCGTAAGCTCCTATTACCTCTGGTTAGTTCTTACCGCTATGAGGGAGATGAAGTCAACTTGACTATAGCAAAAGCCGAGGCAAAAATACTGCACGAGAAGATTACAAAGAAGGCTTATAACGATGACGATTTCATCAGGATTTTAGCTACAAGGAGCAAAGCACAAATTAATGCTACTTTGAATCACTACAAGGATGCATTCGGAAAAGATATAAACAAGGATCTGAAAGAAGATCCAAAAGATGAGTACCTGTCTTTACTAAGATCAACTGTCAAGTGCTTGGTTTTTCCCGAGAGGTACTTTGCAAAGATAATTCGTGAGGCTATCAACAAGCGAGGAACTGATGAAGGAGCTCTTACAAGGGTGGTGGCAACAAGAGCTGAGATTGATTTGAAAATTATAGCTGAGGAGTATCAAAGGAGGAACAGCATCCCTCTTGATCGGGCCATTGTCAAGGACACCACCGGTGACTATGAGAAAATGCTTCTGGCAATTTTAGGACATGATGATGCTTGA

>MsG0580027825.01.T01

ATGGTCGCGCCGGACAACGGCGTGGCCACGCCATCAAAGTTATCAAAGTCATGGCCAAGTCAGAGAGTTGGCACGGCCCGTGCTGCCAGTGGCACGGTCGTGCGCAACTGTGGAAGCCCTTTTGCTGCTTTTGCTCAGAGTGTTGGCACGGCCATCCCAAGGTTCCAGCTGTCTGTTTTGCTATGTTGGGGAACCAATGAAGACCTGATTATATCGATCTTGGGTCATCGGAATGAGGTTCAAAGGAAGGTTATTCGAGAAGCTTACGCTAAGACTTATGACGAAGATCTCATAAAGGCCCTGAACAAAGAGCTTACCAGTGATTTTGAGAGGCTTGTTCATCTTTGGACACTGGAATCCGCTGAACGTGATGCATTTTTGGCAAACGAAGCAACTAAAAGATGGACATCAAGCAATCAGGTTCTAGTGGAATTAGCTTGCACTAGATCTTCTGATCAATTGTTTTTTGCAAAGAAGGCTTATCATGCTCTTCATAAGAAGTCTCTTGAAGAAGATGTTGCTTATCACACAACTGGAGACTTCCGTAAGCTCCTATTACCTCTGGTTAGTTCTTACCGCTATGAGGGAGATGAAGTCAACTTGACTATAGCAAAAGCCGAGGCAAAAATACTGCACGAGAAGATTACAAAGAAGGCTTATAACGATGACGATTTCATCAGGATTTTAGCTACAAGGAGCAAAGCACAAATTAATGCTACTTTGAATCACTACAAGGATGCATTCGGAAAAGATATAAACAAGGATCTGAAAGAAGATCCAAAAGATGAGTACCTGTCTTTACTAAGATCAACTGTCAAGTGCTTGGTTTTTCCCGAGAGGTACTTTGCAAAGATAATTCGTGAGGCTATCAACAAGCGAGGAACTGATGAAGGAGCTCTTACAAGGGTGGTGGCAACAAGAGCTGAGATTGATTTGAAAATTATAGCTGAGGAGTATCAAAGGAGGAACAGCATCCCTCTTGATCGGGCCATTGTCAAGGACACCACCGGTGACTATGAGAAAATGCTTCTGGCAATTTTAGGACATGATGATGCTTGA
Protein sequence

>MsG0580027825.01.T02

MVAPDNGVATPSKLSKSWPSQRVGTARAASGTVVRNCGSPFAAFAQSVGTAIPRFQLSVLLCWGTNEDLIISILGHRNEVQRKVIREAYAKTYDEDLIKALNKELTSDFERLVHLWTLESAERDAFLANEATKRWTSSNQVLVELACTRSSDQLFFAKKAYHALHKKSLEEDVAYHTTGDFRKLLLPLVSSYRYEGDEVNLTIAKAEAKILHEKITKKAYNDDDFIRILATRSKAQINATLNHYKDAFGKDINKDLKEDPKDEYLSLLRSTVKCLVFPERYFAKIIREAINKRGTDEGALTRVVATRAEIDLKIIAEEYQRRNSIPLDRAIVKDTTGDYEKMLLAILGHDDA*

>MsG0580027825.01.T01

MVAPDNGVATPSKLSKSWPSQRVGTARAASGTVVRNCGSPFAAFAQSVGTAIPRFQLSVLLCWGTNEDLIISILGHRNEVQRKVIREAYAKTYDEDLIKALNKELTSDFERLVHLWTLESAERDAFLANEATKRWTSSNQVLVELACTRSSDQLFFAKKAYHALHKKSLEEDVAYHTTGDFRKLLLPLVSSYRYEGDEVNLTIAKAEAKILHEKITKKAYNDDDFIRILATRSKAQINATLNHYKDAFGKDINKDLKEDPKDEYLSLLRSTVKCLVFPERYFAKIIREAINKRGTDEGALTRVVATRAEIDLKIIAEEYQRRNSIPLDRAIVKDTTGDYEKMLLAILGHDDA*