AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480023322.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480023322.01.T01 MTR_0276s0050 88.571 315 7 1 1 286 1 315 0.0 554
MsG0480023322.01.T01 MTR_5g063670 61.905 315 91 1 1 286 1 315 5.23e-137 389
MsG0480023322.01.T01 MTR_8g038210 49.206 315 129 3 1 286 1 313 3.14e-95 283
MsG0480023322.01.T01 MTR_3g018790 48.254 315 133 2 1 286 1 314 6.63e-94 280
MsG0480023322.01.T01 MTR_8g038220 48.718 312 130 2 1 283 1 311 4.97e-93 278
MsG0480023322.01.T01 MTR_8g038220 48.882 313 127 3 1 283 1 310 5.88e-92 275
MsG0480023322.01.T01 MTR_3g018780 46.984 315 136 3 1 285 1 314 1.34e-91 274
MsG0480023322.01.T01 MTR_8g038210 47.302 315 135 3 1 286 1 313 5.88e-90 270
MsG0480023322.01.T01 MTR_8g038180 48.077 312 132 2 1 283 1 311 9.83e-89 267
MsG0480023322.01.T01 MTR_2g031980 41.254 303 149 1 12 285 11 313 4.98e-79 242
MsG0480023322.01.T01 MTR_8g038150 40.317 315 156 2 1 283 1 315 9.72e-71 221
MsG0480023322.01.T01 MTR_3g018790 46.694 242 100 1 74 286 19 260 1.96e-65 206
MsG0480023322.01.T01 MTR_8g107640 36.278 317 169 4 1 286 1 315 2.22e-63 202
MsG0480023322.01.T01 MTR_1g033560 34.810 316 173 4 1 285 1 314 1.54e-58 189
MsG0480023322.01.T01 MTR_6g071605 33.546 313 177 3 1 283 1 312 2.23e-55 181
MsG0480023322.01.T01 MTR_6g071615 35.350 314 170 4 1 283 1 312 1.00e-54 180
MsG0480023322.01.T01 MTR_3g018920 44.811 212 84 2 1 212 1 179 6.93e-54 173
MsG0480023322.01.T01 MTR_1g112520 34.395 314 173 4 1 283 1 312 5.44e-53 175
MsG0480023322.01.T01 MTR_6g071595 35.032 314 171 4 1 283 1 312 5.83e-48 162
MsG0480023322.01.T01 MTR_8g038170 35.161 310 159 7 14 283 4 311 6.88e-44 152
MsG0480023322.01.T01 MTR_8g038170 35.161 310 159 7 14 283 4 311 6.88e-44 152
MsG0480023322.01.T01 MTR_6g071595 35.772 246 154 3 1 244 1 244 4.12e-36 130
MsG0480023322.01.T01 MTR_6g028030 25.182 274 168 6 45 281 34 307 1.91e-17 81.3
MsG0480023322.01.T01 MTR_3g018925 47.619 84 39 1 203 286 31 109 4.55e-17 75.5
MsG0480023322.01.T01 MTR_8g038090 37.634 93 50 2 192 283 5 90 7.67e-12 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480023322.01.T01 AT5G65020 65.924 314 77 1 1 284 1 314 6.89e-151 425
MsG0480023322.01.T01 AT5G10230 65.287 314 80 1 1 285 1 314 9.20e-147 414
MsG0480023322.01.T01 AT5G10220 63.291 316 85 2 1 285 1 316 2.03e-141 401
MsG0480023322.01.T01 AT1G35720 62.025 316 90 1 1 286 1 316 1.96e-139 396
MsG0480023322.01.T01 AT5G65020 66.436 289 67 1 26 284 11 299 5.71e-138 391
MsG0480023322.01.T01 AT5G12380 47.604 313 134 2 1 284 1 312 9.23e-97 287
MsG0480023322.01.T01 AT2G38760 39.308 318 158 3 1 283 1 318 1.39e-71 223
MsG0480023322.01.T01 AT1G68090 36.422 313 169 2 1 283 1 313 2.29e-58 189
MsG0480023322.01.T01 AT1G68090 38.462 221 135 1 1 220 1 221 2.02e-43 149
MsG0480023322.01.T01 AT2G38750 34.564 298 153 7 26 282 2 298 9.21e-38 135
MsG0480023322.01.T01 AT2G38750 34.551 301 155 7 23 282 16 315 9.52e-38 136

Find 57 sgRNAs with CRISPR-Local

Find 151 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATCACTATAACAATGAGTT+TGG 0.243154 4:+83717982 MsG0480023322.01.T01:CDS
TCGCCATTGTGTTTGTGTTC+AGG 0.345562 4:-83716285 None:intergenic
ATCTCCACTTGAACTTCTTA+AGG 0.350377 4:+83717355 MsG0480023322.01.T01:CDS
TCATGAGAAGATTGCGGATA+AGG 0.357945 4:+83717891 MsG0480023322.01.T01:CDS
GATGTTGCCTATCATACTTC+TGG 0.369007 4:+83717422 MsG0480023322.01.T01:CDS
GCAATTGACAAAGACACTTC+TGG 0.392622 4:+83718530 MsG0480023322.01.T01:CDS
ATCACTATAACAATGAGTTT+GGG 0.415323 4:+83717983 MsG0480023322.01.T01:CDS
GAGGAACACTGTTTCTTCTC+TGG 0.435446 4:-83718499 None:intergenic
TGTGGGCATACACCGTTATG+AGG 0.458266 4:+83717822 MsG0480023322.01.T01:CDS
TTGTTGTTACAATCCTGATC+AGG 0.458748 4:-83717930 None:intergenic
ACAGGATGGGGAACGAATGA+AGG 0.469249 4:+83716879 MsG0480023322.01.T01:intron
GATAGGCAACATCTTCTTCA+AGG 0.470858 4:-83717412 None:intergenic
ACAATCATGATGACCTGATC+AGG 0.471756 4:+83717917 MsG0480023322.01.T01:CDS
AGCTGTGCTGCTGTGGACAT+TGG 0.493673 4:+83717241 MsG0480023322.01.T01:CDS
GAAAATTCTCCTTGCACTGA+TGG 0.493991 4:+83718562 MsG0480023322.01.T01:CDS
GAGAAGAAACAGTGTTCCTC+TGG 0.495918 4:+83718502 MsG0480023322.01.T01:CDS
GAGCTGCATTTCTATGAGCC+AGG 0.520838 4:-83716917 None:intergenic
CTTTAAGAAGATCTTCTCCA+TGG 0.522934 4:-83716974 None:intergenic
TAGGCTGGCTATAAACAAGA+TGG 0.541067 4:+83718400 MsG0480023322.01.T01:CDS
AAAATTCTCCTTGCACTGAT+GGG 0.542533 4:+83718563 MsG0480023322.01.T01:CDS
AATTGTTCACTGTCTTCTGA+TGG 0.548405 4:-83716337 None:intergenic
AAGTTCAAGTGGAGATCTTG+TGG 0.549416 4:-83717348 None:intergenic
GATGGAGAAGGAACGTGAGA+GGG 0.549677 4:-83716319 None:intergenic
TCTTGTTTATAGCCAGCCTA+AGG 0.557307 4:-83718397 None:intergenic
AGGCTTGATAATATCGATCC+TGG 0.557589 4:+83716899 MsG0480023322.01.T01:CDS
GCTGCTGTGGACATTGGATC+CGG 0.567043 4:+83717247 MsG0480023322.01.T01:CDS
GGGTCTGCGTGTAAGTTTCG+CGG 0.567457 4:-83716953 None:intergenic
GATGTCACCAGAAGTATGAT+AGG 0.569427 4:-83717429 None:intergenic
AACAGAAAGCTGTGCTGCTG+TGG 0.570202 4:+83717234 MsG0480023322.01.T01:intron
GGTTGATTTGCAGCGAATTG+CGG 0.585356 4:+83718469 MsG0480023322.01.T01:CDS
AAGTGTCTTTGTCAATTGCA+CGG 0.589714 4:-83718526 None:intergenic
TTTAAGAAGATCTTCTCCAT+GGG 0.594102 4:-83716973 None:intergenic
TTGTCAATTGCACGGTCCAG+AGG 0.595483 4:-83718518 None:intergenic
TCACCTCATCTCCCTCATAA+CGG 0.595788 4:-83717834 None:intergenic
TGATGGAGAAGGAACGTGAG+AGG 0.596195 4:-83716320 None:intergenic
ATAGGCAACATCTTCTTCAA+GGG 0.598603 4:-83717411 None:intergenic
TGATTTGCAGCGAATTGCGG+AGG 0.598869 4:+83718472 MsG0480023322.01.T01:CDS
TGAAAATGCTCTTACTAGAG+TGG 0.606160 4:+83718430 MsG0480023322.01.T01:CDS
CATCATGTCCCATCAGTGCA+AGG 0.606991 4:-83718571 None:intergenic
ATTGCTTCATGAGAAGATTG+CGG 0.611914 4:+83717885 MsG0480023322.01.T01:CDS
GTGGGCATACACCGTTATGA+GGG 0.616438 4:+83717823 MsG0480023322.01.T01:CDS
GAAACTTACACGCAGACCCA+TGG 0.623172 4:+83716957 MsG0480023322.01.T01:CDS
AGGCTGGCTATAAACAAGAT+GGG 0.624496 4:+83718401 MsG0480023322.01.T01:CDS
AGATGAGGTGAACATGACAT+TGG 0.629033 4:+83717846 MsG0480023322.01.T01:CDS
TAACGGTGTATGCCCACAAG+AGG 0.631350 4:-83717817 None:intergenic
TCACTGTCTTCTGATGGAGA+AGG 0.641986 4:-83716331 None:intergenic
ATGGAGAAGGAACGTGAGAG+GGG 0.642321 4:-83716318 None:intergenic
TTTGCCTTAAGAAGTTCAAG+TGG 0.642700 4:-83717359 None:intergenic
ACACCGTTATGAGGGAGATG+AGG 0.647772 4:+83717831 MsG0480023322.01.T01:CDS
TTCAAACAATTCGATCATCG+TGG 0.667000 4:+83717316 MsG0480023322.01.T01:CDS
TACTTCTGGTGACATCCGCA+AGG 0.668178 4:+83717436 MsG0480023322.01.T01:CDS
AGTGGTGACAACTAGAGCTG+AGG 0.671413 4:+83718448 MsG0480023322.01.T01:CDS
GTTTGGGAATGTAATAGACA+AGG 0.682197 4:+83717999 MsG0480023322.01.T01:CDS
ATCGATCTGTGTGTATAATG+TGG 0.684795 4:-83716262 None:intergenic
TGATCAGGATTGTAACAACA+AGG 0.686508 4:+83717932 MsG0480023322.01.T01:CDS
GAAGACAGTGAACAATTGCG+CGG 0.707759 4:+83716343 MsG0480023322.01.T01:CDS
GATCCTGAACACAAACACAA+TGG 0.715353 4:+83716282 MsG0480023322.01.T01:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAGTTTAAAATTTTGATATA+TGG + Chr4:83717031-83717050 MsG0480023322.01.T01:intron 10.0%
!! ATATTTCTTAAAGAGAAAAA+TGG - Chr4:83718127-83718146 None:intergenic 15.0%
!!! ATTAACTTCCTTTTAATTAA+AGG + Chr4:83718181-83718200 MsG0480023322.01.T01:intron 15.0%
!!! TTAACTTCCTTTTAATTAAA+GGG + Chr4:83718182-83718201 MsG0480023322.01.T01:intron 15.0%
!! AAAGGTTAAATACAAATAAC+TGG - Chr4:83717705-83717724 None:intergenic 20.0%
!! ACAGAAATAAGAATCATAAA+TGG - Chr4:83718039-83718058 None:intergenic 20.0%
!! ATAAAAATGATCAAACTAGA+TGG - Chr4:83716446-83716465 None:intergenic 20.0%
!! CAAGAAATTAGTAAGTTTAA+GGG - Chr4:83717466-83717485 None:intergenic 20.0%
!! CTAATATCTTAATTAGATCA+TGG + Chr4:83716494-83716513 MsG0480023322.01.T01:intron 20.0%
!! CTATAATCCCTTTAATTAAA+AGG - Chr4:83718192-83718211 None:intergenic 20.0%
!! CTTCATCAATAATATGATTA+TGG - Chr4:83718159-83718178 None:intergenic 20.0%
!! TCAAGAAATTAGTAAGTTTA+AGG - Chr4:83717467-83717486 None:intergenic 20.0%
!! TGAAATAAAAGTCAAAGAAA+TGG - Chr4:83716396-83716415 None:intergenic 20.0%
!!! ATATTTCTAGTTAATGAATG+TGG + Chr4:83716606-83716625 MsG0480023322.01.T01:intron 20.0%
!!! ATGAATATCTGAAATTATTG+AGG + Chr4:83718329-83718348 MsG0480023322.01.T01:intron 20.0%
!!! GATAACCTTTTTTTTTACTA+GGG + Chr4:83718248-83718267 MsG0480023322.01.T01:intron 20.0%
!!! TGAATATCTGAAATTATTGA+GGG + Chr4:83718330-83718349 MsG0480023322.01.T01:intron 20.0%
!!! TGTAAATCTTTTCAACTTTA+AGG + Chr4:83717586-83717605 MsG0480023322.01.T01:intron 20.0%
! AAAATCTTCCAAAATTTACG+TGG + Chr4:83717563-83717582 MsG0480023322.01.T01:intron 25.0%
! AAACAAAATTTCATCAGACA+AGG - Chr4:83717771-83717790 None:intergenic 25.0%
! AACAAAATTTCATCAGACAA+GGG - Chr4:83717770-83717789 None:intergenic 25.0%
! AATAAACAGTGCTCAAATAA+GGG + Chr4:83716767-83716786 MsG0480023322.01.T01:intron 25.0%
! AATCACTATAACAATGAGTT+TGG + Chr4:83717982-83718001 MsG0480023322.01.T01:CDS 25.0%
! ACAAACCCTAGTAAAAAAAA+AGG - Chr4:83718256-83718275 None:intergenic 25.0%
! ATCAATAATATGATTATGGC+TGG - Chr4:83718155-83718174 None:intergenic 25.0%
! ATCACTATAACAATGAGTTT+GGG + Chr4:83717983-83718002 MsG0480023322.01.T01:CDS 25.0%
! GTTAAATACAAATAACTGGT+TGG - Chr4:83717701-83717720 None:intergenic 25.0%
! TAAAAGTCAAAGAAATGGAT+CGG - Chr4:83716391-83716410 None:intergenic 25.0%
! TATATGAATAACCTTGACTA+AGG + Chr4:83717159-83717178 MsG0480023322.01.T01:intron 25.0%
! TCAACAATTGTTAGTGAAAA+TGG - Chr4:83717105-83717124 None:intergenic 25.0%
! TCAATAATATGATTATGGCT+GGG - Chr4:83718154-83718173 None:intergenic 25.0%
! TCAATTTCTTCTGTAGAAAA+AGG + Chr4:83718226-83718245 MsG0480023322.01.T01:intron 25.0%
!! ATTCTTTTGACATAAATCTG+AGG - Chr4:83717637-83717656 None:intergenic 25.0%
!! TTTTTCCTTTGTGTTTTTCA+TGG + Chr4:83716797-83716816 MsG0480023322.01.T01:intron 25.0%
!!! ATGACATATTTTTACAGGAT+GGG + Chr4:83716866-83716885 MsG0480023322.01.T01:intron 25.0%
!!! GGATAACCTTTTTTTTTACT+AGG + Chr4:83718247-83718266 MsG0480023322.01.T01:intron 25.0%
!!! TTTCGATGACATATTTTTAC+AGG + Chr4:83716861-83716880 MsG0480023322.01.T01:intron 25.0%
AAACAACAATATGAATGGAC+AGG - Chr4:83716844-83716863 None:intergenic 30.0%
ACAAAATTTCATCAGACAAG+GGG - Chr4:83717769-83717788 None:intergenic 30.0%
CATCGAAACAACAATATGAA+TGG - Chr4:83716849-83716868 None:intergenic 30.0%
GAATAAACAGTGCTCAAATA+AGG + Chr4:83716766-83716785 MsG0480023322.01.T01:intron 30.0%
GCATAAGCATAAACATGAAA+AGG - Chr4:83717723-83717742 None:intergenic 30.0%
GGCATTCTTCTACTAAATAA+AGG - Chr4:83717616-83717635 None:intergenic 30.0%
TTTAAGAAGATCTTCTCCAT+GGG - Chr4:83716976-83716995 None:intergenic 30.0%
! GATTTACACCACGTAAATTT+TGG - Chr4:83717574-83717593 None:intergenic 30.0%
! TAGACAAGGTATGAATGTTT+TGG + Chr4:83718013-83718032 MsG0480023322.01.T01:intron 30.0%
! TGATTCTTCTCAAAAGCTTT+TGG + Chr4:83717792-83717811 MsG0480023322.01.T01:intron 30.0%
!! AGAACTTTCAAGTGATTTTG+AGG + Chr4:83717007-83717026 MsG0480023322.01.T01:CDS 30.0%
!! CAAGGTATTTTCATGCAATA+AGG + Chr4:83717190-83717209 MsG0480023322.01.T01:intron 30.0%
!! GATGACATATTTTTACAGGA+TGG + Chr4:83716865-83716884 MsG0480023322.01.T01:intron 30.0%
!! TGACATATTTTTACAGGATG+GGG + Chr4:83716867-83716886 MsG0480023322.01.T01:intron 30.0%
!!! CAACATTTTAGTTGCTTGAT+TGG - Chr4:83717294-83717313 None:intergenic 30.0%
!!! TCTAGTAAGAGCATTTTCAT+CGG - Chr4:83718429-83718448 None:intergenic 30.0%
AAAAACGTCAGATCAAGACA+TGG - Chr4:83717745-83717764 None:intergenic 35.0%
AAAAATACACCCATCTTGGT+GGG + Chr4:83717668-83717687 MsG0480023322.01.T01:intron 35.0%
AAGTGTCTTTGTCAATTGCA+CGG - Chr4:83718529-83718548 None:intergenic 35.0%
AAGTTTAAGGGTTTACCTTG+CGG - Chr4:83717454-83717473 None:intergenic 35.0%
AATTGTTCACTGTCTTCTGA+TGG - Chr4:83716340-83716359 None:intergenic 35.0%
ATAGGCAACATCTTCTTCAA+GGG - Chr4:83717414-83717433 None:intergenic 35.0%
ATCGATCTGTGTGTATAATG+TGG - Chr4:83716265-83716284 None:intergenic 35.0%
ATCTCCACTTGAACTTCTTA+AGG + Chr4:83717355-83717374 MsG0480023322.01.T01:CDS 35.0%
ATTATTGAGGGCAGCAATTA+AGG + Chr4:83718342-83718361 MsG0480023322.01.T01:intron 35.0%
ATTGCTTCATGAGAAGATTG+CGG + Chr4:83717885-83717904 MsG0480023322.01.T01:CDS 35.0%
CAAAATTTCATCAGACAAGG+GGG - Chr4:83717768-83717787 None:intergenic 35.0%
GAGTTCCTCAAAATTTCTCA+GGG - Chr4:83718378-83718397 None:intergenic 35.0%
GATTCATCGTGATCATGATT+TGG - Chr4:83716703-83716722 None:intergenic 35.0%
GTTTGGGAATGTAATAGACA+AGG + Chr4:83717999-83718018 MsG0480023322.01.T01:CDS 35.0%
TCATGCCATGAAAAACACAA+AGG - Chr4:83716805-83716824 None:intergenic 35.0%
TGAAAATGCTCTTACTAGAG+TGG + Chr4:83718430-83718449 MsG0480023322.01.T01:CDS 35.0%
TGATCAGGATTGTAACAACA+AGG + Chr4:83717932-83717951 MsG0480023322.01.T01:CDS 35.0%
TTATTGAGGGCAGCAATTAA+GGG + Chr4:83718343-83718362 MsG0480023322.01.T01:intron 35.0%
TTCAAACAATTCGATCATCG+TGG + Chr4:83717316-83717335 MsG0480023322.01.T01:CDS 35.0%
TTCCAAAAATACACCCATCT+TGG + Chr4:83717664-83717683 MsG0480023322.01.T01:intron 35.0%
TTGACATGAAACCTTAGTCA+AGG - Chr4:83717173-83717192 None:intergenic 35.0%
TTGACTAAGGTTTCATGTCA+AGG + Chr4:83717172-83717191 MsG0480023322.01.T01:intron 35.0%
TTTGCCTTAAGAAGTTCAAG+TGG - Chr4:83717362-83717381 None:intergenic 35.0%
TTTGGACTACATGAAGAGAT+CGG - Chr4:83716685-83716704 None:intergenic 35.0%
! AAAATTCTCCTTGCACTGAT+GGG + Chr4:83718563-83718582 MsG0480023322.01.T01:CDS 35.0%
! CTTTAAGAAGATCTTCTCCA+TGG - Chr4:83716977-83716996 None:intergenic 35.0%
! TTGTTGTTACAATCCTGATC+AGG - Chr4:83717933-83717952 None:intergenic 35.0%
!! CTTCAAGGGACTTTTTGAAA+CGG - Chr4:83717400-83717419 None:intergenic 35.0%
!! GAAATTTTGAGGAACTCCTT+AGG + Chr4:83718381-83718400 MsG0480023322.01.T01:intron 35.0%
AAGTTCAAGTGGAGATCTTG+TGG - Chr4:83717351-83717370 None:intergenic 40.0%
ACAATCATGATGACCTGATC+AGG + Chr4:83717917-83717936 MsG0480023322.01.T01:CDS 40.0%
ACCAACCAAACACGTAACAT+AGG - Chr4:83716548-83716567 None:intergenic 40.0%
AGATGAGGTGAACATGACAT+TGG + Chr4:83717846-83717865 MsG0480023322.01.T01:CDS 40.0%
AGTCAAAGAAATGGATCGGT+AGG - Chr4:83716387-83716406 None:intergenic 40.0%
CAAAAATACACCCATCTTGG+TGG + Chr4:83717667-83717686 MsG0480023322.01.T01:intron 40.0%
CAACCAAACACGTAACATAG+GGG - Chr4:83716546-83716565 None:intergenic 40.0%
CCAACCAAACACGTAACATA+GGG - Chr4:83716547-83716566 None:intergenic 40.0%
GAAAATTCTCCTTGCACTGA+TGG + Chr4:83718562-83718581 MsG0480023322.01.T01:CDS 40.0%
GATAGGCAACATCTTCTTCA+AGG - Chr4:83717415-83717434 None:intergenic 40.0%
GATCCTGAACACAAACACAA+TGG + Chr4:83716282-83716301 MsG0480023322.01.T01:exon 40.0%
GATGTTGCCTATCATACTTC+TGG + Chr4:83717422-83717441 MsG0480023322.01.T01:CDS 40.0%
GCAATTGACAAAGACACTTC+TGG + Chr4:83718530-83718549 MsG0480023322.01.T01:CDS 40.0%
GCAGGATTTGGAAACTGATT+CGG + Chr4:83718303-83718322 MsG0480023322.01.T01:intron 40.0%
GGAGTTCCTCAAAATTTCTC+AGG - Chr4:83718379-83718398 None:intergenic 40.0%
TCATGAGAAGATTGCGGATA+AGG + Chr4:83717891-83717910 MsG0480023322.01.T01:CDS 40.0%
TCCTCAAAATTTCTCAGGGT+AGG - Chr4:83718374-83718393 None:intergenic 40.0%
! ACCTACCCTGAGAAATTTTG+AGG + Chr4:83718370-83718389 MsG0480023322.01.T01:intron 40.0%
! AGGCTGGCTATAAACAAGAT+GGG + Chr4:83718401-83718420 MsG0480023322.01.T01:CDS 40.0%
! AGGCTTGATAATATCGATCC+TGG + Chr4:83716899-83716918 MsG0480023322.01.T01:CDS 40.0%
! ATTAGATCTGCCCTTTTGCT+GGG - Chr4:83718073-83718092 None:intergenic 40.0%
! CACCAAGATGGGTGTATTTT+TGG - Chr4:83717669-83717688 None:intergenic 40.0%
! GATGTCACCAGAAGTATGAT+AGG - Chr4:83717432-83717451 None:intergenic 40.0%
! TAGGCTGGCTATAAACAAGA+TGG + Chr4:83718400-83718419 MsG0480023322.01.T01:CDS 40.0%
! TATTAGATCTGCCCTTTTGC+TGG - Chr4:83718074-83718093 None:intergenic 40.0%
! TCTTGTTTATAGCCAGCCTA+AGG - Chr4:83718400-83718419 None:intergenic 40.0%
!!! AAAGCTTTTGGTTCCTCTTG+TGG + Chr4:83717804-83717823 MsG0480023322.01.T01:intron 40.0%
!!! AAGCTTTTGGTTCCTCTTGT+GGG + Chr4:83717805-83717824 MsG0480023322.01.T01:intron 40.0%
ACACCCCTATGTTACGTGTT+TGG + Chr4:83716540-83716559 MsG0480023322.01.T01:intron 45.0%
CCCTATGTTACGTGTTTGGT+TGG + Chr4:83716544-83716563 MsG0480023322.01.T01:intron 45.0%
GAAGACAGTGAACAATTGCG+CGG + Chr4:83716343-83716362 MsG0480023322.01.T01:CDS 45.0%
GAGAAGAAACAGTGTTCCTC+TGG + Chr4:83718502-83718521 MsG0480023322.01.T01:CDS 45.0%
GGCTAAAAATGCATCACGCT+CGG - Chr4:83717273-83717292 None:intergenic 45.0%
TCACCTCATCTCCCTCATAA+CGG - Chr4:83717837-83717856 None:intergenic 45.0%
TCACTGTCTTCTGATGGAGA+AGG - Chr4:83716334-83716353 None:intergenic 45.0%
TCGAACTAACGTTGAGCTTC+TGG + Chr4:83718278-83718297 MsG0480023322.01.T01:intron 45.0%
TCGCCATTGTGTTTGTGTTC+AGG - Chr4:83716288-83716307 None:intergenic 45.0%
TTGCAACACTCCCAGCAAAA+GGG + Chr4:83718060-83718079 MsG0480023322.01.T01:intron 45.0%
! GAGGAACACTGTTTCTTCTC+TGG - Chr4:83718502-83718521 None:intergenic 45.0%
!! GGTTGATTTGCAGCGAATTG+CGG + Chr4:83718469-83718488 MsG0480023322.01.T01:CDS 45.0%
!! TTTTGAGGAACTCCTTAGGC+TGG + Chr4:83718385-83718404 MsG0480023322.01.T01:intron 45.0%
!!! ATTTTTATTATTATTACTTT+TGG + Chr4:83716458-83716477 MsG0480023322.01.T01:intron 5.0%
AAAAATGCATCACGCTCGGC+CGG - Chr4:83717269-83717288 None:intergenic 50.0%
AATACACCCATCTTGGTGGG+TGG + Chr4:83717671-83717690 MsG0480023322.01.T01:intron 50.0%
ACACCGTTATGAGGGAGATG+AGG + Chr4:83717831-83717850 MsG0480023322.01.T01:CDS 50.0%
ACAGGATGGGGAACGAATGA+AGG + Chr4:83716879-83716898 MsG0480023322.01.T01:intron 50.0%
AGTGGTGACAACTAGAGCTG+AGG + Chr4:83718448-83718467 MsG0480023322.01.T01:CDS 50.0%
ATGGAGAAGGAACGTGAGAG+GGG - Chr4:83716321-83716340 None:intergenic 50.0%
CATCATGTCCCATCAGTGCA+AGG - Chr4:83718574-83718593 None:intergenic 50.0%
GAAACTTACACGCAGACCCA+TGG + Chr4:83716957-83716976 MsG0480023322.01.T01:CDS 50.0%
GAGCTGCATTTCTATGAGCC+AGG - Chr4:83716920-83716939 None:intergenic 50.0%
GATGGAGAAGGAACGTGAGA+GGG - Chr4:83716322-83716341 None:intergenic 50.0%
GTGGGCATACACCGTTATGA+GGG + Chr4:83717823-83717842 MsG0480023322.01.T01:CDS 50.0%
GTTGCAACACTCCCAGCAAA+AGG + Chr4:83718059-83718078 MsG0480023322.01.T01:intron 50.0%
TAACGGTGTATGCCCACAAG+AGG - Chr4:83717820-83717839 None:intergenic 50.0%
TACTTCTGGTGACATCCGCA+AGG + Chr4:83717436-83717455 MsG0480023322.01.T01:CDS 50.0%
TGATGGAGAAGGAACGTGAG+AGG - Chr4:83716323-83716342 None:intergenic 50.0%
TGTGGGCATACACCGTTATG+AGG + Chr4:83717822-83717841 MsG0480023322.01.T01:CDS 50.0%
TTGTCAATTGCACGGTCCAG+AGG - Chr4:83718521-83718540 None:intergenic 50.0%
! AACAGAAAGCTGTGCTGCTG+TGG + Chr4:83717234-83717253 MsG0480023322.01.T01:intron 50.0%
! CAATTGCGCGGTGCTTTTCA+AGG + Chr4:83716355-83716374 MsG0480023322.01.T01:CDS 50.0%
! TGATTTGCAGCGAATTGCGG+AGG + Chr4:83718472-83718491 MsG0480023322.01.T01:CDS 50.0%
GCTGCTGTGGACATTGGATC+CGG + Chr4:83717247-83717266 MsG0480023322.01.T01:CDS 55.0%
GGCTATCCACCCACCAAGAT+GGG - Chr4:83717680-83717699 None:intergenic 55.0%
GGGTCTGCGTGTAAGTTTCG+CGG - Chr4:83716956-83716975 None:intergenic 55.0%
TGGCTATCCACCCACCAAGA+TGG - Chr4:83717681-83717700 None:intergenic 55.0%
! AACGTTGAGCTTCTGGCTGC+AGG + Chr4:83718285-83718304 MsG0480023322.01.T01:intron 55.0%
! AGCTGTGCTGCTGTGGACAT+TGG + Chr4:83717241-83717260 MsG0480023322.01.T01:CDS 55.0%
! GAGCTTCTGGCTGCAGGATT+TGG + Chr4:83718291-83718310 MsG0480023322.01.T01:intron 55.0%
Chromosome Type Strat End Strand Name
Chr4 gene 83716248 83718598 83716248 ID=MsG0480023322.01;Name=MsG0480023322.01
Chr4 mRNA 83716248 83718598 83716248 ID=MsG0480023322.01.T01;Parent=MsG0480023322.01;Name=MsG0480023322.01.T01;_AED=0.34;_eAED=0.34;_QI=53|0.75|0.8|1|1|1|5|0|286
Chr4 exon 83716248 83716376 83716248 ID=MsG0480023322.01.T01:exon:5949;Parent=MsG0480023322.01.T01
Chr4 exon 83716883 83717028 83716883 ID=MsG0480023322.01.T01:exon:5950;Parent=MsG0480023322.01.T01
Chr4 exon 83717239 83717457 83717239 ID=MsG0480023322.01.T01:exon:5951;Parent=MsG0480023322.01.T01
Chr4 exon 83717808 83718020 83717808 ID=MsG0480023322.01.T01:exon:5952;Parent=MsG0480023322.01.T01
Chr4 exon 83718392 83718598 83718392 ID=MsG0480023322.01.T01:exon:5953;Parent=MsG0480023322.01.T01
Chr4 five_prime_UTR 83716248 83716300 83716248 ID=MsG0480023322.01.T01:five_prime_utr;Parent=MsG0480023322.01.T01
Chr4 CDS 83716301 83716376 83716301 ID=MsG0480023322.01.T01:cds;Parent=MsG0480023322.01.T01
Chr4 CDS 83716883 83717028 83716883 ID=MsG0480023322.01.T01:cds;Parent=MsG0480023322.01.T01
Chr4 CDS 83717239 83717457 83717239 ID=MsG0480023322.01.T01:cds;Parent=MsG0480023322.01.T01
Chr4 CDS 83717808 83718020 83717808 ID=MsG0480023322.01.T01:cds;Parent=MsG0480023322.01.T01
Chr4 CDS 83718392 83718598 83718392 ID=MsG0480023322.01.T01:cds;Parent=MsG0480023322.01.T01
Gene Sequence

>MsG0480023322.01.T01

ATGGCGACATTGAAGATCCCCTCTCACGTTCCTTCTCCATCAGAAGACAGTGAACAATTGCGCGGTGCTTTTCAAGGATGGGGAACGAATGAAGGCTTGATAATATCGATCCTGGCTCATAGAAATGCAGCTCAGCGTAAGTCGATCCGCGAAACTTACACGCAGACCCATGGAGAAGATCTTCTTAAAGATCTTGACAAAGAACTTTCAAGTGATTTTGAGAAAGCTGTGCTGCTGTGGACATTGGATCCGGCCGAGCGTGATGCATTTTTAGCCAATCAAGCAACTAAAATGTTGACTTCAAACAATTCGATCATCGTGGAAATTGCTTCCACAAGATCTCCACTTGAACTTCTTAAGGCAAAGCAAGCATATCAAGTCCGTTTCAAAAAGTCCCTTGAAGAAGATGTTGCCTATCATACTTCTGGTGACATCCGCAAGCTTTTGGTTCCTCTTGTGGGCATACACCGTTATGAGGGAGATGAGGTGAACATGACATTGGCAAAATCTGAAGCTAAATTGCTTCATGAGAAGATTGCGGATAAGGCTTACAATCATGATGACCTGATCAGGATTGTAACAACAAGGAGTAAAGCGCAATTAAATGCAACTTTGAATCACTATAACAATGAGTTTGGGAATGTAATAGACAAGGAACTCCTTAGGCTGGCTATAAACAAGATGGGAACCGATGAAAATGCTCTTACTAGAGTGGTGACAACTAGAGCTGAGGTTGATTTGCAGCGAATTGCGGAGGAATACCAGAGAAGAAACAGTGTTCCTCTGGACCGTGCAATTGACAAAGACACTTCTGGAGACTATCAGAAAATTCTCCTTGCACTGATGGGACATGATGAGTAG

Protein sequence

>MsG0480023322.01.T01

MATLKIPSHVPSPSEDSEQLRGAFQGWGTNEGLIISILAHRNAAQRKSIRETYTQTHGEDLLKDLDKELSSDFEKAVLLWTLDPAERDAFLANQATKMLTSNNSIIVEIASTRSPLELLKAKQAYQVRFKKSLEEDVAYHTSGDIRKLLVPLVGIHRYEGDEVNMTLAKSEAKLLHEKIADKAYNHDDLIRIVTTRSKAQLNATLNHYNNEFGNVIDKELLRLAINKMGTDENALTRVVTTRAEVDLQRIAEEYQRRNSVPLDRAIDKDTSGDYQKILLALMGHDE*