AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680034694.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680034694.01.T01 MTR_6g071615 95.319 235 11 0 1 235 81 315 2.51e-159 444
MsG0680034694.01.T01 MTR_6g071605 87.660 235 29 0 1 235 81 315 8.67e-154 430
MsG0680034694.01.T01 MTR_1g112520 89.362 235 25 0 1 235 81 315 2.91e-150 421
MsG0680034694.01.T01 MTR_6g071595 86.809 235 31 0 1 235 81 315 5.01e-144 405
MsG0680034694.01.T01 MTR_6g071595 25.229 218 137 5 24 230 33 235 1.16e-11 63.5
MsG0680034694.01.T01 MTR_8g107640 76.923 234 54 0 1 234 81 314 8.07e-136 384
MsG0680034694.01.T01 MTR_8g107640 23.849 239 160 4 2 231 11 236 1.71e-12 65.9
MsG0680034694.01.T01 MTR_6g071595 84.118 170 27 0 1 170 81 250 5.45e-104 302
MsG0680034694.01.T01 MTR_6g071595 25.229 218 137 5 24 230 33 235 1.42e-11 63.2
MsG0680034694.01.T01 MTR_1g033560 58.798 233 90 3 3 232 83 312 4.05e-92 273
MsG0680034694.01.T01 MTR_1g033560 31.206 141 93 2 89 229 15 151 5.60e-14 70.1
MsG0680034694.01.T01 MTR_8g038150 37.021 235 141 3 3 232 83 315 1.80e-44 152
MsG0680034694.01.T01 MTR_3g018780 34.746 236 152 2 1 235 80 314 9.26e-44 149
MsG0680034694.01.T01 MTR_5g063670 36.364 209 132 1 27 235 108 315 4.11e-42 145
MsG0680034694.01.T01 MTR_2g031980 33.906 233 152 2 1 232 80 311 2.59e-41 143
MsG0680034694.01.T01 MTR_8g038220 33.051 236 156 2 1 235 80 314 2.89e-39 138
MsG0680034694.01.T01 MTR_8g038220 33.051 236 156 2 1 235 79 313 2.92e-39 138
MsG0680034694.01.T01 MTR_3g018790 34.914 232 147 4 3 232 28 257 4.42e-38 133
MsG0680034694.01.T01 MTR_3g018790 34.914 232 147 4 3 232 82 311 1.88e-37 133
MsG0680034694.01.T01 MTR_6g028030 34.615 234 149 4 1 230 74 307 2.84e-37 133
MsG0680034694.01.T01 MTR_8g038180 34.199 231 150 2 3 232 82 311 1.19e-36 131
MsG0680034694.01.T01 MTR_8g038180 28.472 144 99 2 88 231 13 152 3.31e-12 65.1
MsG0680034694.01.T01 MTR_8g038210 33.043 230 153 1 3 232 82 310 1.89e-36 130
MsG0680034694.01.T01 MTR_8g038210 28.834 163 104 4 69 231 1 151 7.60e-11 61.2
MsG0680034694.01.T01 MTR_8g038210 33.043 230 153 1 3 232 82 310 2.76e-36 130
MsG0680034694.01.T01 MTR_0276s0050 31.897 232 154 3 3 232 83 312 1.20e-33 123
MsG0680034694.01.T01 MTR_8g038170 33.333 240 137 6 4 232 84 311 1.12e-29 113
MsG0680034694.01.T01 MTR_8g038170 33.333 240 137 6 4 232 84 311 1.12e-29 113
MsG0680034694.01.T01 MTR_3g018925 43.956 91 51 0 143 233 17 107 9.70e-17 73.9
MsG0680034694.01.T01 MTR_8g038090 46.377 69 36 1 165 232 22 90 9.67e-13 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680034694.01.T01 AT1G68090 51.915 235 112 1 1 234 81 315 1.18e-85 257
MsG0680034694.01.T01 AT1G68090 47.647 170 88 1 1 169 81 250 3.32e-51 167
MsG0680034694.01.T01 AT1G68090 25.463 216 134 5 28 231 37 237 5.31e-16 75.1
MsG0680034694.01.T01 AT5G65020 37.339 233 141 4 3 232 68 298 3.73e-45 153
MsG0680034694.01.T01 AT5G65020 37.339 233 141 4 3 232 83 313 4.65e-45 153
MsG0680034694.01.T01 AT5G10220 36.052 233 145 3 3 232 83 314 2.47e-44 151
MsG0680034694.01.T01 AT5G10230 35.931 231 146 2 3 232 83 312 1.18e-43 149
MsG0680034694.01.T01 AT5G12380 34.468 235 144 4 3 232 82 311 2.34e-40 141
MsG0680034694.01.T01 AT1G35720 35.238 210 134 2 27 235 108 316 1.69e-39 139
MsG0680034694.01.T01 AT1G35720 30.986 142 94 2 90 231 16 153 3.04e-13 68.2
MsG0680034694.01.T01 AT1G35720 22.886 201 133 5 1 192 10 197 7.10e-11 61.2
MsG0680034694.01.T01 AT2G38760 32.489 237 152 3 3 232 83 318 2.78e-33 122
MsG0680034694.01.T01 AT2G38750 33.745 243 140 8 4 235 87 319 3.43e-27 106
MsG0680034694.01.T01 AT2G38750 33.745 243 140 8 4 235 70 302 4.13e-27 105

Find 71 sgRNAs with CRISPR-Local

Find 337 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAACATCTTTGACTAATTAT+TGG 0.193213 6:-92985345 None:intergenic
TATAAGGCAATGAAAGGTTT+AGG 0.249516 6:+92990640 MsG0680034694.01.T01:CDS
GAAATTCAATCAAACACTTC+TGG 0.259929 6:+92989516 MsG0680034694.01.T01:CDS
TGCTTCGTTTGCTGAATATT+TGG 0.268316 6:-92990157 None:intergenic
TATAAGGCAATGAAAGGTTT+AGG 0.270992 6:+92985098 MsG0680034694.01.T01:five_prime_UTR
AACATCTTTGACTAATTATT+GGG 0.282048 6:-92985344 None:intergenic
TCTGCACATCCGGCAACTAT+AGG 0.282461 6:+92985236 MsG0680034694.01.T01:five_prime_UTR
TATTGACCTCGGGGCCTTCC+AGG 0.292907 6:-92990055 None:intergenic
AACGTCTTTGACTAATTATT+CGG 0.298282 6:-92990826 None:intergenic
TTCAGACTGCAGTTCTGCTT+TGG 0.323325 6:+92989331 MsG0680034694.01.T01:five_prime_UTR
CTCAATGCAGGTGCTGTATA+AGG 0.337100 6:+92985082 MsG0680034694.01.T01:five_prime_UTR
CAAACGAAGCAGCGCGCATT+TGG 0.337878 6:+92990169 MsG0680034694.01.T01:CDS
ACCTTTGCAAAATACTTTGC+TGG 0.342116 6:-92990391 None:intergenic
AAGGAAACATCGGGGAATTT+CGG 0.345214 6:+92990331 MsG0680034694.01.T01:CDS
CAGTTATACCATTCAAAGTT+TGG 0.348370 6:+92989477 MsG0680034694.01.T01:CDS
TTGTTTACCTCACATTATTT+CGG 0.350234 6:+92989305 MsG0680034694.01.T01:five_prime_UTR
CTTGCATTCGAGTTTCAGTT+AGG 0.352917 6:+92990952 MsG0680034694.01.T01:three_prime_UTR
AACCATGCAGGTGTTGTATA+AGG 0.366552 6:+92990624 MsG0680034694.01.T01:intron
CTGCACATCCGGCAACTATA+GGG 0.376857 6:+92985237 MsG0680034694.01.T01:five_prime_UTR
ATAAGGCAATGAAAGGTTTA+GGG 0.382653 6:+92990641 MsG0680034694.01.T01:CDS
TAACTTCAGTAGCAGCTTCA+AGG 0.403263 6:-92989416 None:intergenic
ATAAGGCAATGAAAGGTTTA+GGG 0.415419 6:+92985099 MsG0680034694.01.T01:five_prime_UTR
AAATTCAATCAAACACTTCT+GGG 0.418107 6:+92989517 MsG0680034694.01.T01:CDS
CCTGTAGTTGCCAGATGTTT+CGG 0.420812 6:-92990779 None:intergenic
TGCAGTTCACTCTGCACATC+CGG 0.423623 6:+92985226 MsG0680034694.01.T01:five_prime_UTR
GCGATTTCTCTATTGACCTC+GGG 0.433118 6:-92990065 None:intergenic
CCTCGGGGCCTTCCAGGCGA+GGG 0.442747 6:-92990049 None:intergenic
AAGAAAAGCCCTATAGTTGC+CGG 0.452505 6:-92985245 None:intergenic
CTAATGATAACACACTCATA+AGG 0.453321 6:+92985123 MsG0680034694.01.T01:five_prime_UTR
CTAATGATAACACACTCATA+AGG 0.453321 6:+92990665 MsG0680034694.01.T01:CDS
ACCTCGGGGCCTTCCAGGCG+AGG 0.455615 6:-92990050 None:intergenic
CACTTCTGGGGATCTTCAAA+AGG 0.457195 6:+92989530 MsG0680034694.01.T01:CDS
CTTTGGATGCCTGACCCTGC+AGG 0.460388 6:+92989348 MsG0680034694.01.T01:exon
GCAGTTCACTCCGAAACATC+TGG 0.461957 6:+92990769 MsG0680034694.01.T01:CDS
GATAAACGCCAAACTTTGAA+TGG 0.462297 6:-92989485 None:intergenic
ATATGTAAGCACCCCTCGCC+TGG 0.464547 6:+92990037 MsG0680034694.01.T01:CDS
ACGTCACGTCCTGCAGGGTC+AGG 0.471205 6:-92989357 None:intergenic
ATTTCTACGTCACGTCCTGC+AGG 0.475288 6:-92989363 None:intergenic
TTCATATCAGGCAGTAAAGA+AGG 0.475953 6:+92990312 MsG0680034694.01.T01:intron
TAATGATAACACACTCATAA+GGG 0.480243 6:+92985124 MsG0680034694.01.T01:five_prime_UTR
TAATGATAACACACTCATAA+GGG 0.480243 6:+92990666 MsG0680034694.01.T01:CDS
CCGAAACATCTGGCAACTAC+AGG 0.482604 6:+92990779 MsG0680034694.01.T01:CDS
CAAAGGTTCTCTACAGAGCT+GGG 0.485666 6:+92990099 MsG0680034694.01.T01:CDS
GCAAAGGTTCTCTACAGAGC+TGG 0.487793 6:+92990098 MsG0680034694.01.T01:CDS
GCAGTAAAGAAGGAAACATC+GGG 0.488334 6:+92990322 MsG0680034694.01.T01:CDS
AGCGATTTCTCTATTGACCT+CGG 0.493854 6:-92990066 None:intergenic
AGGAGAAAGGACAGACATCA+AGG 0.497735 6:+92985319 MsG0680034694.01.T01:five_prime_UTR
GACGTGACGTAGAAATCATT+AGG 0.498265 6:+92989370 MsG0680034694.01.T01:CDS
TTTAGATATTGGAGTTGGGA+TGG 0.504234 6:-92989453 None:intergenic
TTGCATTCGAGTTTCAGTTA+GGG 0.541175 6:+92990953 MsG0680034694.01.T01:three_prime_UTR
GTAAGCACCCCTCGCCTGGA+AGG 0.546921 6:+92990041 MsG0680034694.01.T01:CDS
CTCGGGGCCTTCCAGGCGAG+GGG 0.550633 6:-92990048 None:intergenic
CAATAGAGAAATCGCTGAGA+AGG 0.555710 6:+92990073 MsG0680034694.01.T01:CDS
GGCAGTAAAGAAGGAAACAT+CGG 0.578507 6:+92990321 MsG0680034694.01.T01:intron
GGCGTCACCAATTCTCCAGT+CGG 0.581498 6:-92991046 None:intergenic
GCTTATTATCATGACATGTA+CGG 0.583424 6:+92990203 MsG0680034694.01.T01:CDS
GTGTTGTATAAGGCAATGAA+AGG 0.599181 6:+92990634 MsG0680034694.01.T01:CDS
GTACGGTCACTCATTGAAGA+AGG 0.600269 6:+92990220 MsG0680034694.01.T01:CDS
CGAAACATCTGGCAACTACA+GGG 0.603082 6:+92990780 MsG0680034694.01.T01:CDS
GTCATGATAATAAGCACTGA+CGG 0.608427 6:-92990195 None:intergenic
GTGCTGTATAAGGCAATGAA+AGG 0.609141 6:+92985092 MsG0680034694.01.T01:five_prime_UTR
CCCTCGCCTGGAAGGCCCCG+AGG 0.620142 6:+92990049 MsG0680034694.01.T01:CDS
CGATTTCTCTATTGACCTCG+GGG 0.629169 6:-92990064 None:intergenic
AATCGCTGAGAAGGATGCAA+AGG 0.638063 6:+92990082 MsG0680034694.01.T01:CDS
TTTCTACGTCACGTCCTGCA+GGG 0.638356 6:-92989362 None:intergenic
AATTCAATCAAACACTTCTG+GGG 0.644492 6:+92989518 MsG0680034694.01.T01:CDS
GGAGAAAGGACAGACATCAA+GGG 0.660479 6:+92985320 MsG0680034694.01.T01:five_prime_UTR
TCATAAGGGTCATTGTAACA+AGG 0.683484 6:+92985138 MsG0680034694.01.T01:five_prime_UTR
TCATAAGGGTCATTGTAACA+AGG 0.683484 6:+92990680 MsG0680034694.01.T01:CDS
AAAGGTTCTCTACAGAGCTG+GGG 0.685088 6:+92990100 MsG0680034694.01.T01:CDS
CAGTAAAGAAGGAAACATCG+GGG 0.772687 6:+92990323 MsG0680034694.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAAGACTAATTAT+TGG - Chr6:92985287-92985306 None:intergenic 10.0%
!! AAAAAAAAAGACTAATTATT+GGG - Chr6:92985286-92985305 None:intergenic 10.0%
!!! AAATCAATTTTTTTCTTTTT+TGG - Chr6:92988316-92988335 None:intergenic 10.0%
!!! AATTAGTCTTTTTTTTTTTT+TGG + Chr6:92985289-92985308 MsG0680034694.01.T01:five_prime_UTR 10.0%
!!! GTTTGTAAATTTTTATATAA+AGG - Chr6:92986153-92986172 None:intergenic 10.0%
!!! TCAATTTCATTTATTTATTT+TGG + Chr6:92990270-92990289 MsG0680034694.01.T01:intron 10.0%
!! ATGCAAATATCTTTATTATA+TGG - Chr6:92985636-92985655 None:intergenic 15.0%
!! CTAATTGTAACAAAAAAAAT+GGG - Chr6:92987603-92987622 None:intergenic 15.0%
!! CTATAACAAAAATAAGATAA+GGG - Chr6:92990479-92990498 None:intergenic 15.0%
!! TCTATAACAAAAATAAGATA+AGG - Chr6:92990480-92990499 None:intergenic 15.0%
!! TTTAATTACAAGAAATTTCT+TGG + Chr6:92987857-92987876 MsG0680034694.01.T01:intron 15.0%
!!! ATTTTTACATATGTTTTGAA+GGG + Chr6:92986531-92986550 MsG0680034694.01.T01:intron 15.0%
!!! TAAGAGATTTTTTATTTGAA+CGG + Chr6:92987078-92987097 MsG0680034694.01.T01:intron 15.0%
!!! TATTTTTACATATGTTTTGA+AGG + Chr6:92986530-92986549 MsG0680034694.01.T01:intron 15.0%
!!! TCTTATTTTTGTTATAGAAA+TGG + Chr6:92990482-92990501 MsG0680034694.01.T01:intron 15.0%
!!! TTTTCAAGTTAATATAACAA+AGG + Chr6:92989955-92989974 MsG0680034694.01.T01:intron 15.0%
!! AACATCTTTGACTAATTATT+GGG - Chr6:92985347-92985366 None:intergenic 20.0%
!! AAGTCAAAAGTAATTAATCA+TGG + Chr6:92987478-92987497 MsG0680034694.01.T01:intron 20.0%
!! ATAAATTGTTTATCCAAACA+TGG + Chr6:92990553-92990572 MsG0680034694.01.T01:intron 20.0%
!! ATGTATAAGTAGAAAATACA+AGG - Chr6:92989101-92989120 None:intergenic 20.0%
!! CAAAAATCACTTAACTTTAA+TGG + Chr6:92986698-92986717 MsG0680034694.01.T01:intron 20.0%
!! CAAAATTCACTATAGTTTAT+AGG + Chr6:92989870-92989889 MsG0680034694.01.T01:intron 20.0%
!! GATTCAATTCATTAATTGAA+TGG - Chr6:92986503-92986522 None:intergenic 20.0%
!! GCTAATTGTAACAAAAAAAA+TGG - Chr6:92987604-92987623 None:intergenic 20.0%
!!! AAATTACTAATTTTGAGCAA+GGG + Chr6:92986415-92986434 MsG0680034694.01.T01:intron 20.0%
!!! ACTCAACTCAAATTTTAATA+TGG + Chr6:92988478-92988497 MsG0680034694.01.T01:intron 20.0%
!!! ACTTCCATTTATTTTCTAAA+TGG + Chr6:92987565-92987584 MsG0680034694.01.T01:intron 20.0%
!!! ATGTTTAGATGTTTTAAACT+TGG + Chr6:92990885-92990904 MsG0680034694.01.T01:three_prime_UTR 20.0%
!!! CTCGATTATAAATTTGTTTA+GGG - Chr6:92986175-92986194 None:intergenic 20.0%
!!! TTTCTAAAATGAAATTAGCT+AGG - Chr6:92988865-92988884 None:intergenic 20.0%
!!! TTTTGTTTTATATACATGAC+CGG - Chr6:92987626-92987645 None:intergenic 20.0%
!!! TTTTTTTTGTTACAATTAGC+CGG + Chr6:92987604-92987623 MsG0680034694.01.T01:intron 20.0%
!!! TTTTTTTTTTTGGATAAGCT+AGG + Chr6:92985299-92985318 MsG0680034694.01.T01:five_prime_UTR 20.0%
! AAAAACTGTACTTTGATATG+TGG + Chr6:92988883-92988902 MsG0680034694.01.T01:intron 25.0%
! AAAATAAGATAAGGGCAAAA+AGG - Chr6:92990471-92990490 None:intergenic 25.0%
! AAAATTGGAAAGTCGTAATT+CGG - Chr6:92986267-92986286 None:intergenic 25.0%
! AAATACTCATTCCATTTCTA+TGG + Chr6:92987810-92987829 MsG0680034694.01.T01:intron 25.0%
! AAATTCAATCAAACACTTCT+GGG + Chr6:92989517-92989536 MsG0680034694.01.T01:CDS 25.0%
! AACGTCTTTGACTAATTATT+CGG - Chr6:92990829-92990848 None:intergenic 25.0%
! AATGTGACTTAAGTTATGTT+CGG - Chr6:92987251-92987270 None:intergenic 25.0%
! AATTTGAATAGCATGATCAT+TGG - Chr6:92989072-92989091 None:intergenic 25.0%
! ACAACAACAAAAATTAGACA+CGG - Chr6:92989777-92989796 None:intergenic 25.0%
! ACATAACTTAAGTCACATTA+AGG + Chr6:92987252-92987271 MsG0680034694.01.T01:intron 25.0%
! ACATGCAATTTATAATGCAA+CGG - Chr6:92987756-92987775 None:intergenic 25.0%
! ACCATTAATGTGACTAATTT+GGG - Chr6:92989604-92989623 None:intergenic 25.0%
! AGAAAAAGTTGAAATAGCAA+TGG + Chr6:92989676-92989695 MsG0680034694.01.T01:intron 25.0%
! AGTCACATTAAGGATATTAT+TGG + Chr6:92987262-92987281 MsG0680034694.01.T01:intron 25.0%
! ATAATGGCATACACTATAAT+CGG - Chr6:92989648-92989667 None:intergenic 25.0%
! ATGAAAACAACAAATTTAGC+CGG + Chr6:92987370-92987389 MsG0680034694.01.T01:intron 25.0%
! CAAAAGTAATTAATCATGGT+GGG + Chr6:92987482-92987501 MsG0680034694.01.T01:intron 25.0%
! CTCTCCATTTAGAAAATAAA+TGG - Chr6:92987572-92987591 None:intergenic 25.0%
! GAACATCTTTGACTAATTAT+TGG - Chr6:92985348-92985367 None:intergenic 25.0%
! TAAAATGAGCCTAATTACTT+CGG - Chr6:92985429-92985448 None:intergenic 25.0%
! TAAATCAACTCTTACAAAAC+CGG - Chr6:92988457-92988476 None:intergenic 25.0%
! TAAATTGCATGTTGTACAAA+TGG + Chr6:92987764-92987783 MsG0680034694.01.T01:intron 25.0%
! TAATATCAAAAGATACCAGA+TGG - Chr6:92986128-92986147 None:intergenic 25.0%
! TAATGATAACACACTCATAA+GGG + Chr6:92985124-92985143 MsG0680034694.01.T01:five_prime_UTR 25.0%
! TCAAAAGTAATTAATCATGG+TGG + Chr6:92987481-92987500 MsG0680034694.01.T01:intron 25.0%
! TTATAAAGTTCGTATCTGAT+AGG - Chr6:92985694-92985713 None:intergenic 25.0%
! TTGTACAAATGGTAAGTAAT+GGG + Chr6:92987775-92987794 MsG0680034694.01.T01:intron 25.0%
! TTGTTTACCTCACATTATTT+CGG + Chr6:92989305-92989324 MsG0680034694.01.T01:five_prime_UTR 25.0%
!! AAGTTTTTCTATACTAAGCA+TGG + Chr6:92985394-92985413 MsG0680034694.01.T01:intron 25.0%
!! AATTACTAATTTTGAGCAAG+GGG + Chr6:92986416-92986435 MsG0680034694.01.T01:intron 25.0%
!! ACTTTCCAATTTTACTAATC+GGG + Chr6:92986274-92986293 MsG0680034694.01.T01:intron 25.0%
!! AGTTTATAGGTTTTTGTCAT+AGG + Chr6:92989883-92989902 MsG0680034694.01.T01:intron 25.0%
!! ATAAATGGAAGTATGCAATT+TGG - Chr6:92987557-92987576 None:intergenic 25.0%
!! ATGTTCAATCTTTTGTTAGT+AGG + Chr6:92985362-92985381 MsG0680034694.01.T01:intron 25.0%
!! GAAATTACTAATTTTGAGCA+AGG + Chr6:92986414-92986433 MsG0680034694.01.T01:intron 25.0%
!! GACTTTCCAATTTTACTAAT+CGG + Chr6:92986273-92986292 MsG0680034694.01.T01:intron 25.0%
!! GCTCGATTATAAATTTGTTT+AGG - Chr6:92986176-92986195 None:intergenic 25.0%
!! GTTTATAGGTTTTTGTCATA+GGG + Chr6:92989884-92989903 MsG0680034694.01.T01:intron 25.0%
!! TACTTTGTTCATCAAGATTT+TGG + Chr6:92985755-92985774 MsG0680034694.01.T01:intron 25.0%
!! TAGGCTCATTTTATGTTATT+TGG + Chr6:92985436-92985455 MsG0680034694.01.T01:intron 25.0%
!! TTGAACGGTCTAATAATTTT+TGG + Chr6:92987093-92987112 MsG0680034694.01.T01:intron 25.0%
!! TTTGTTATAGAAATGGCTTA+TGG + Chr6:92990489-92990508 MsG0680034694.01.T01:intron 25.0%
!!! AAGCAGTTTTCTAAAATTGA+AGG - Chr6:92990427-92990446 None:intergenic 25.0%
!!! ACCTAATATTTTAACGTGTT+GGG + Chr6:92988652-92988671 MsG0680034694.01.T01:intron 25.0%
!!! ATGAGTACTTTTTTTTTGAG+AGG + Chr6:92987706-92987725 MsG0680034694.01.T01:intron 25.0%
!!! ATTGAGATTGTTGTTATTTG+TGG + Chr6:92985496-92985515 MsG0680034694.01.T01:intron 25.0%
!!! CATTTATTTTCTAAATGGAG+AGG + Chr6:92987570-92987589 MsG0680034694.01.T01:intron 25.0%
!!! CTTTTTCTAGTACTGTATAA+TGG - Chr6:92989664-92989683 None:intergenic 25.0%
!!! GGTATAACTGTTTTAGATAT+TGG - Chr6:92989467-92989486 None:intergenic 25.0%
!!! TACCTAATATTTTAACGTGT+TGG + Chr6:92988651-92988670 MsG0680034694.01.T01:intron 25.0%
!!! TGAGTACTTTTTTTTTGAGA+GGG + Chr6:92987707-92987726 MsG0680034694.01.T01:intron 25.0%
!!! TTTCATAAAATCGGTTTGTA+AGG + Chr6:92988348-92988367 MsG0680034694.01.T01:intron 25.0%
!!! TTTCTAAAATTGAAGGACAT+AGG - Chr6:92990420-92990439 None:intergenic 25.0%
AATTCAATCAAACACTTCTG+GGG + Chr6:92989518-92989537 MsG0680034694.01.T01:CDS 30.0%
ACAATATTTGAAAAACCGAC+TGG + Chr6:92991031-92991050 MsG0680034694.01.T01:three_prime_UTR 30.0%
ACCCAACACGTTAAAATATT+AGG - Chr6:92988656-92988675 None:intergenic 30.0%
ACTTTGATATGTGGTTATAC+AGG + Chr6:92988892-92988911 MsG0680034694.01.T01:intron 30.0%
AGACACATAAAATAGGTAGT+GGG - Chr6:92987526-92987545 None:intergenic 30.0%
ATAAGATAAGGCCTTAACAT+GGG + Chr6:92988399-92988418 MsG0680034694.01.T01:intron 30.0%
ATAAGGCAATGAAAGGTTTA+GGG + Chr6:92985099-92985118 MsG0680034694.01.T01:five_prime_UTR 30.0%
ATACCATATGAACAAGGAAT+AGG + Chr6:92986972-92986991 MsG0680034694.01.T01:intron 30.0%
ATATGTGGTTATACAGGATT+TGG + Chr6:92988898-92988917 MsG0680034694.01.T01:intron 30.0%
ATATTATTGTCAGAACACGT+GGG + Chr6:92987285-92987304 MsG0680034694.01.T01:intron 30.0%
ATCTTTCCAAATGGTAGAAA+TGG - Chr6:92987444-92987463 None:intergenic 30.0%
ATGAAAATTGACTGAGATAC+TGG + Chr6:92988191-92988210 MsG0680034694.01.T01:intron 30.0%
ATGTGTAACAGTCGATTAAA+AGG - Chr6:92985589-92985608 None:intergenic 30.0%
ATGTTGTTCGATATTCTTGT+TGG - Chr6:92988987-92989006 None:intergenic 30.0%
ATTCATGTATCACATGTTGT+TGG - Chr6:92988741-92988760 None:intergenic 30.0%
CAGTTATACCATTCAAAGTT+TGG + Chr6:92989477-92989496 MsG0680034694.01.T01:CDS 30.0%
CCCAAAAAAATATACATGAC+CGG - Chr6:92987392-92987411 None:intergenic 30.0%
CTAATGATAACACACTCATA+AGG + Chr6:92985123-92985142 MsG0680034694.01.T01:five_prime_UTR 30.0%
CTTGTAATTAAATGCAACTG+TGG - Chr6:92987849-92987868 None:intergenic 30.0%
GAAATGGAGAGGATAATAAA+TGG - Chr6:92987428-92987447 None:intergenic 30.0%
GAAATTCAATCAAACACTTC+TGG + Chr6:92989516-92989535 MsG0680034694.01.T01:CDS 30.0%
GAATACGAAATTAGAAACCA+AGG + Chr6:92986589-92986608 MsG0680034694.01.T01:intron 30.0%
GACCATTAATGTGACTAATT+TGG - Chr6:92989605-92989624 None:intergenic 30.0%
GAGAAAAATGCAAATGAGAA+GGG + Chr6:92986662-92986681 MsG0680034694.01.T01:intron 30.0%
GAGAGATAGACACATAAAAT+AGG - Chr6:92987533-92987552 None:intergenic 30.0%
GAGTATCATTGGATAAGATA+AGG + Chr6:92988387-92988406 MsG0680034694.01.T01:intron 30.0%
GCTTATTATCATGACATGTA+CGG + Chr6:92990203-92990222 MsG0680034694.01.T01:CDS 30.0%
GTTGTACAAATGGTAAGTAA+TGG + Chr6:92987774-92987793 MsG0680034694.01.T01:intron 30.0%
TAAAGCAATAATCAACCTCT+AGG - Chr6:92985554-92985573 None:intergenic 30.0%
TAACTAAGGCTCAATGTAAA+TGG - Chr6:92989575-92989594 None:intergenic 30.0%
TAAGTACATGTTGAGTTCTA+TGG + Chr6:92986212-92986231 MsG0680034694.01.T01:intron 30.0%
TACGAAGTTATCTACTTGTA+AGG - Chr6:92989162-92989181 None:intergenic 30.0%
TAGACACATAAAATAGGTAG+TGG - Chr6:92987527-92987546 None:intergenic 30.0%
TATAAGGCAATGAAAGGTTT+AGG + Chr6:92985098-92985117 MsG0680034694.01.T01:five_prime_UTR 30.0%
TCACTTATAAACCCATGTTA+AGG - Chr6:92988413-92988432 None:intergenic 30.0%
TCCCAAATTAGTCACATTAA+TGG + Chr6:92989600-92989619 MsG0680034694.01.T01:intron 30.0%
TCTAGACTCAGAATGTTAAA+AGG + Chr6:92989846-92989865 MsG0680034694.01.T01:intron 30.0%
TGAAAAACCGAAATAATGTG+AGG - Chr6:92989315-92989334 None:intergenic 30.0%
TGAGAAAAATGCAAATGAGA+AGG + Chr6:92986661-92986680 MsG0680034694.01.T01:intron 30.0%
TGTACAAATGGTAAGTAATG+GGG + Chr6:92987776-92987795 MsG0680034694.01.T01:intron 30.0%
TGTATGTGAGTGTTAGATAA+CGG - Chr6:92987056-92987075 None:intergenic 30.0%
TGTGTCTTTATCTTTCCAAA+TGG - Chr6:92987453-92987472 None:intergenic 30.0%
TTAGACACGGAAATCAAAAT+TGG - Chr6:92989764-92989783 None:intergenic 30.0%
TTCATGTATCACATGTTGTT+GGG - Chr6:92988740-92988759 None:intergenic 30.0%
TTCCTTGCATACAAATACAA+CGG + Chr6:92985664-92985683 MsG0680034694.01.T01:intron 30.0%
! AATTTGGGATGTGATAACTA+AGG - Chr6:92989589-92989608 None:intergenic 30.0%
! ACTTCGTAAAGAGTATGTTA+AGG + Chr6:92989174-92989193 MsG0680034694.01.T01:intron 30.0%
! CTAGAGAGTATAATAGTAGT+TGG + Chr6:92986931-92986950 MsG0680034694.01.T01:intron 30.0%
! TCTTACAAAACCGGTTTATA+AGG - Chr6:92988448-92988467 None:intergenic 30.0%
!! ACTGTTTTAGATATTGGAGT+TGG - Chr6:92989461-92989480 None:intergenic 30.0%
!! AGTCAATTTTAGTGATTCGA+AGG - Chr6:92986812-92986831 None:intergenic 30.0%
!! CTGTTTTAGATATTGGAGTT+GGG - Chr6:92989460-92989479 None:intergenic 30.0%
!! GATTGTTGTTATTTGTGGAT+TGG + Chr6:92985501-92985520 MsG0680034694.01.T01:intron 30.0%
!! GTATAGAAAAACTTGCTATG+AGG - Chr6:92985388-92985407 None:intergenic 30.0%
!! GTTATTTGTGGATTGGTAAA+GGG + Chr6:92985508-92985527 MsG0680034694.01.T01:intron 30.0%
!! TGTTATTTGTGGATTGGTAA+AGG + Chr6:92985507-92985526 MsG0680034694.01.T01:intron 30.0%
!! TTTGCTATGAATTTTGTGAC+CGG - Chr6:92986387-92986406 None:intergenic 30.0%
!!! CCGGTCATGTATATTTTTTT+GGG + Chr6:92987389-92987408 MsG0680034694.01.T01:intron 30.0%
!!! CGGTCATGTATATTTTTTTG+GGG + Chr6:92987390-92987409 MsG0680034694.01.T01:intron 30.0%
!!! GTGAAGAGATTTTTTTGGAT+CGG + Chr6:92986355-92986374 MsG0680034694.01.T01:intron 30.0%
!!! GTTGGTTTTAAGAGTATCAT+TGG + Chr6:92988376-92988395 MsG0680034694.01.T01:intron 30.0%
AAATCGTGAGTTAACTACGT+TGG + Chr6:92987164-92987183 MsG0680034694.01.T01:intron 35.0%
AACATGTACTTAGCTGCATT+TGG - Chr6:92986204-92986223 None:intergenic 35.0%
AACCAAGGTAAGATATCTTG+TGG + Chr6:92986604-92986623 MsG0680034694.01.T01:intron 35.0%
AACCGTTGTATTTGTATGCA+AGG - Chr6:92985669-92985688 None:intergenic 35.0%
AAGATATCTTGTGGAGAGTA+TGG + Chr6:92986613-92986632 MsG0680034694.01.T01:intron 35.0%
AAGTAGCAGAACTGTAGAAT+TGG - Chr6:92987135-92987154 None:intergenic 35.0%
AATGTCATTCATGCCATGTT+TGG - Chr6:92990569-92990588 None:intergenic 35.0%
ACACTCATACCATATGAACA+AGG + Chr6:92986966-92986985 MsG0680034694.01.T01:intron 35.0%
ACATTCCTCACCTTATAAAC+CGG + Chr6:92988435-92988454 MsG0680034694.01.T01:intron 35.0%
ACCTTTGCAAAATACTTTGC+TGG - Chr6:92990394-92990413 None:intergenic 35.0%
ACTGCAGACAATAAGAAAGT+TGG - Chr6:92985926-92985945 None:intergenic 35.0%
AGAATATCGAACAACATACG+CGG + Chr6:92988990-92989009 MsG0680034694.01.T01:intron 35.0%
AGAGAGAGAGAGAGAAATAA+TGG - Chr6:92988039-92988058 None:intergenic 35.0%
AGTCCTATTCCTTGTTCATA+TGG - Chr6:92986978-92986997 None:intergenic 35.0%
ATCGGCAGAAGAAATATGAT+AGG - Chr6:92989630-92989649 None:intergenic 35.0%
ATGAATCTTTGTATGACGTG+TGG + Chr6:92986442-92986461 MsG0680034694.01.T01:intron 35.0%
ATTCCGACGATAAGTATTAG+TGG + Chr6:92989734-92989753 MsG0680034694.01.T01:intron 35.0%
CAAAAGGAGGAAGTAGATAT+GGG + Chr6:92986009-92986028 MsG0680034694.01.T01:intron 35.0%
CTAATACTTATCGTCGGAAT+TGG - Chr6:92989734-92989753 None:intergenic 35.0%
GATAAACGCCAAACTTTGAA+TGG - Chr6:92989488-92989507 None:intergenic 35.0%
GATAAGATAAGGCCTTAACA+TGG + Chr6:92988398-92988417 MsG0680034694.01.T01:intron 35.0%
GATATTATTGTCAGAACACG+TGG + Chr6:92987284-92987303 MsG0680034694.01.T01:intron 35.0%
GATTGTTGATCATTTCAGCA+AGG + Chr6:92985791-92985810 MsG0680034694.01.T01:intron 35.0%
GCTTTCCCGATTAGTAAAAT+TGG - Chr6:92986282-92986301 None:intergenic 35.0%
GTGTTGTATAAGGCAATGAA+AGG + Chr6:92990634-92990653 MsG0680034694.01.T01:CDS 35.0%
TACTCATTCCATTTCTATGG+TGG + Chr6:92987813-92987832 MsG0680034694.01.T01:intron 35.0%
TCAAAAGGAGGAAGTAGATA+TGG + Chr6:92986008-92986027 MsG0680034694.01.T01:intron 35.0%
TCAAAATTCAACGCATCAGT+TGG - Chr6:92989262-92989281 None:intergenic 35.0%
TCATAAGGGTCATTGTAACA+AGG + Chr6:92985138-92985157 MsG0680034694.01.T01:five_prime_UTR 35.0%
TCGATATTCTTGTTGGATGT+AGG - Chr6:92988980-92988999 None:intergenic 35.0%
TGAATCTTTGTATGACGTGT+GGG + Chr6:92986443-92986462 MsG0680034694.01.T01:intron 35.0%
TGAGAGAAAGAACAAGAAGA+TGG + Chr6:92987938-92987957 MsG0680034694.01.T01:intron 35.0%
TTCATATCAGGCAGTAAAGA+AGG + Chr6:92990312-92990331 MsG0680034694.01.T01:intron 35.0%
TTCCGACGATAAGTATTAGT+GGG + Chr6:92989735-92989754 MsG0680034694.01.T01:intron 35.0%
TTTACTAATCGGGAAAGCTA+AGG + Chr6:92986284-92986303 MsG0680034694.01.T01:intron 35.0%
TTTAGATATTGGAGTTGGGA+TGG - Chr6:92989456-92989475 None:intergenic 35.0%
! CATTTGCATTTTTCTCACCA+TGG - Chr6:92986658-92986677 None:intergenic 35.0%
! CTTTTAGATGTCTCAGTTAG+GGG + Chr6:92986560-92986579 MsG0680034694.01.T01:intron 35.0%
! GCTTTTAGATGTCTCAGTTA+GGG + Chr6:92986559-92986578 MsG0680034694.01.T01:intron 35.0%
! GGGAACGAACAATTTTCTAT+GGG + Chr6:92987305-92987324 MsG0680034694.01.T01:intron 35.0%
! TGCTTCGTTTGCTGAATATT+TGG - Chr6:92990160-92990179 None:intergenic 35.0%
! TGCTTTTAGATGTCTCAGTT+AGG + Chr6:92986558-92986577 MsG0680034694.01.T01:intron 35.0%
! TGGGAACGAACAATTTTCTA+TGG + Chr6:92987304-92987323 MsG0680034694.01.T01:intron 35.0%
! TTGCATTCGAGTTTCAGTTA+GGG + Chr6:92990953-92990972 MsG0680034694.01.T01:three_prime_UTR 35.0%
! TTTTGGATAAGCTAGGAGAA+AGG + Chr6:92985306-92985325 MsG0680034694.01.T01:five_prime_UTR 35.0%
!! AAAAGTGCTTAGCACACAAT+CGG - Chr6:92989811-92989830 None:intergenic 35.0%
!! AAAATCGGTTTGTAAGGTGA+TGG + Chr6:92988354-92988373 MsG0680034694.01.T01:intron 35.0%
!! GTCATGATAATAAGCACTGA+CGG - Chr6:92990198-92990217 None:intergenic 35.0%
!! TCCAGCAAAGTATTTTGCAA+AGG + Chr6:92990390-92990409 MsG0680034694.01.T01:CDS 35.0%
!! TTTCTAGCTGACTTCATATC+AGG + Chr6:92990300-92990319 MsG0680034694.01.T01:intron 35.0%
!!! GCCGGTCATGTATATTTTTT+TGG + Chr6:92987388-92987407 MsG0680034694.01.T01:intron 35.0%
!!! TGATGTGGATGGTTTTGAAT+GGG - Chr6:92986781-92986800 None:intergenic 35.0%
!!! TTTTTTGGATCGGTTCTTTC+CGG + Chr6:92986365-92986384 MsG0680034694.01.T01:intron 35.0%
AAGAAAAGCCCTATAGTTGC+CGG - Chr6:92985248-92985267 None:intergenic 40.0%
AAGGAAACATCGGGGAATTT+CGG + Chr6:92990331-92990350 MsG0680034694.01.T01:CDS 40.0%
AATTCGGTAGCTTCTAGTCA+AGG - Chr6:92986251-92986270 None:intergenic 40.0%
ACTGGTTGAACATCATGTTG+TGG - Chr6:92986728-92986747 None:intergenic 40.0%
ACTTAAGTCACGCAGGTTAT+AGG - Chr6:92987190-92987209 None:intergenic 40.0%
AGAGCTGGGGAAAAAAAACT+CGG + Chr6:92990113-92990132 MsG0680034694.01.T01:CDS 40.0%
AGCAATGACGAAGCAACTAA+TGG + Chr6:92986752-92986771 MsG0680034694.01.T01:intron 40.0%
AGCGAAAAGCCGAAGTAATT+AGG + Chr6:92985417-92985436 MsG0680034694.01.T01:intron 40.0%
AGCGATTTCTCTATTGACCT+CGG - Chr6:92990069-92990088 None:intergenic 40.0%
ATGCGAGCAAGATCTTAACA+AGG - Chr6:92990019-92990038 None:intergenic 40.0%
ATTCAACGCATCAGTTGGAT+TGG - Chr6:92989257-92989276 None:intergenic 40.0%
CAACCATCAACTTACCTAAG+TGG - Chr6:92988547-92988566 None:intergenic 40.0%
CAACTACTCCACCATAGAAA+TGG - Chr6:92987824-92987843 None:intergenic 40.0%
CAACTTTACCGTGCTTTCAA+AGG + Chr6:92988011-92988030 MsG0680034694.01.T01:intron 40.0%
CAATAGAGAAATCGCTGAGA+AGG + Chr6:92990073-92990092 MsG0680034694.01.T01:CDS 40.0%
CACCCACTAATACTTATCGT+CGG - Chr6:92989740-92989759 None:intergenic 40.0%
CAGTAAAGAAGGAAACATCG+GGG + Chr6:92990323-92990342 MsG0680034694.01.T01:CDS 40.0%
CATGTTGAGTTCTATGGAGT+TGG + Chr6:92986218-92986237 MsG0680034694.01.T01:intron 40.0%
CTAAGTGGCCAGATAGAAAA+TGG - Chr6:92988532-92988551 None:intergenic 40.0%
CTCCACAAGATATCTTACCT+TGG - Chr6:92986609-92986628 None:intergenic 40.0%
GAAAGCTAAGGATTGGATGT+TGG + Chr6:92986296-92986315 MsG0680034694.01.T01:intron 40.0%
GACGTGACGTAGAAATCATT+AGG + Chr6:92989370-92989389 MsG0680034694.01.T01:CDS 40.0%
GCAGTAAAGAAGGAAACATC+GGG + Chr6:92990322-92990341 MsG0680034694.01.T01:CDS 40.0%
GGAGAGGATAATAAATGGAG+AGG - Chr6:92987423-92987442 None:intergenic 40.0%
GGCAGAAGAAATATGATAGG+AGG - Chr6:92989627-92989646 None:intergenic 40.0%
GGCAGTAAAGAAGGAAACAT+CGG + Chr6:92990321-92990340 MsG0680034694.01.T01:intron 40.0%
GTGCTGTATAAGGCAATGAA+AGG + Chr6:92985092-92985111 MsG0680034694.01.T01:five_prime_UTR 40.0%
TAACTTCAGTAGCAGCTTCA+AGG - Chr6:92989419-92989438 None:intergenic 40.0%
TAATCGGGAAAGCTAAGGAT+TGG + Chr6:92986289-92986308 MsG0680034694.01.T01:intron 40.0%
TCAAAAGATACCAGATGGAC+TGG - Chr6:92986123-92986142 None:intergenic 40.0%
TCCAAATGGTAGAAATGGAG+AGG - Chr6:92987439-92987458 None:intergenic 40.0%
TCCTCTCCATTTCTACCATT+TGG + Chr6:92987435-92987454 MsG0680034694.01.T01:intron 40.0%
TGAAAAACCGACTGGAGAAT+TGG + Chr6:92991039-92991058 MsG0680034694.01.T01:three_prime_UTR 40.0%
TGAACGATCCTGACATCAAA+AGG + Chr6:92985993-92986012 MsG0680034694.01.T01:intron 40.0%
TTCCATGGAAGGACGAATAA+AGG + Chr6:92986075-92986094 MsG0680034694.01.T01:intron 40.0%
! AAATGGTAAGTAATGGGGAC+AGG + Chr6:92987781-92987800 MsG0680034694.01.T01:intron 40.0%
! AACCATGCAGGTGTTGTATA+AGG + Chr6:92990624-92990643 MsG0680034694.01.T01:intron 40.0%
! CAAAACCGGTTTATAAGGTG+AGG - Chr6:92988443-92988462 None:intergenic 40.0%
! CATTTTCTATCTGGCCACTT+AGG + Chr6:92988530-92988549 MsG0680034694.01.T01:intron 40.0%
! CTGATGCGTTGAATTTTGAG+TGG + Chr6:92989263-92989282 MsG0680034694.01.T01:intron 40.0%
! CTTGCATTCGAGTTTCAGTT+AGG + Chr6:92990952-92990971 MsG0680034694.01.T01:three_prime_UTR 40.0%
! GCTTTTCTTCTCGCACTTTT+GGG + Chr6:92985259-92985278 MsG0680034694.01.T01:five_prime_UTR 40.0%
! TAATGGCACCTTTGAAAGCA+CGG - Chr6:92988022-92988041 None:intergenic 40.0%
! TACTTCCTCCTTTTGATGTC+AGG - Chr6:92986004-92986023 None:intergenic 40.0%
! TCACACTTTTGTCTCAATGC+AGG + Chr6:92985070-92985089 MsG0680034694.01.T01:five_prime_UTR 40.0%
! TCATACTTTTGCAACCATGC+AGG + Chr6:92990612-92990631 MsG0680034694.01.T01:intron 40.0%
!!! CGAGCGTGAAGAGATTTTTT+TGG + Chr6:92986350-92986369 MsG0680034694.01.T01:intron 40.0%
!!! CTGATGTGGATGGTTTTGAA+TGG - Chr6:92986782-92986801 None:intergenic 40.0%
AAAGGTTCTCTACAGAGCTG+GGG + Chr6:92990100-92990119 MsG0680034694.01.T01:CDS 45.0%
AATCGCTGAGAAGGATGCAA+AGG + Chr6:92990082-92990101 MsG0680034694.01.T01:CDS 45.0%
ACGATCCTGACATCAAAAGG+AGG + Chr6:92985996-92986015 MsG0680034694.01.T01:intron 45.0%
ACTTCCAGAGGAGCAACATT+AGG - Chr6:92988717-92988736 None:intergenic 45.0%
AGCACATTAGGGGATTTCCA+TGG + Chr6:92986060-92986079 MsG0680034694.01.T01:intron 45.0%
AGCAGAAGAAACCGAAGAAG+AGG + Chr6:92986998-92987017 MsG0680034694.01.T01:intron 45.0%
AGGAGAAAGGACAGACATCA+AGG + Chr6:92985319-92985338 MsG0680034694.01.T01:five_prime_UTR 45.0%
AGGTGTACTTCTGATGTGGA+TGG - Chr6:92986792-92986811 None:intergenic 45.0%
AGTTGCATGGCATCATCTCT+AGG - Chr6:92987996-92988015 None:intergenic 45.0%
ATATCGAACAACATACGCGG+AGG + Chr6:92988993-92989012 MsG0680034694.01.T01:intron 45.0%
CAAAACGAGTACACGAACCA+TGG + Chr6:92986638-92986657 MsG0680034694.01.T01:intron 45.0%
CAAAGGTTCTCTACAGAGCT+GGG + Chr6:92990099-92990118 MsG0680034694.01.T01:CDS 45.0%
CAGAGCTAAGCGAAAGTTAG+AGG + Chr6:92989036-92989055 MsG0680034694.01.T01:intron 45.0%
CATGAAGCTTGCCTCTTCTT+CGG - Chr6:92987012-92987031 None:intergenic 45.0%
CATTAGGGGATTTCCATGGA+AGG + Chr6:92986064-92986083 MsG0680034694.01.T01:intron 45.0%
CCAGATAGAAAATGGTCGAG+CGG - Chr6:92988524-92988543 None:intergenic 45.0%
CCTGTAGTTGCCAGATGTTT+CGG - Chr6:92990782-92990801 None:intergenic 45.0%
CGAAACATCTGGCAACTACA+GGG + Chr6:92990780-92990799 MsG0680034694.01.T01:CDS 45.0%
CGATTTCTCTATTGACCTCG+GGG - Chr6:92990067-92990086 None:intergenic 45.0%
CTAGGCTCAACAATTCCTAG+AGG + Chr6:92985536-92985555 MsG0680034694.01.T01:intron 45.0%
CTCCTCATGAAGAGATGTCA+TGG + Chr6:92986477-92986496 MsG0680034694.01.T01:intron 45.0%
CTGGGGATCTTCAAAAGGTT+AGG + Chr6:92989535-92989554 MsG0680034694.01.T01:intron 45.0%
GAAGAAGAGGCAAGCTTCAT+GGG + Chr6:92987011-92987030 MsG0680034694.01.T01:intron 45.0%
GATTGGTAAAGGGAGAGACT+AGG + Chr6:92985518-92985537 MsG0680034694.01.T01:intron 45.0%
GCGATTTCTCTATTGACCTC+GGG - Chr6:92990068-92990087 None:intergenic 45.0%
GCTTCGTCATTGCTTCAAAC+TGG - Chr6:92986746-92986765 None:intergenic 45.0%
GGAGAAAGGACAGACATCAA+GGG + Chr6:92985320-92985339 MsG0680034694.01.T01:five_prime_UTR 45.0%
GTACGGTCACTCATTGAAGA+AGG + Chr6:92990220-92990239 MsG0680034694.01.T01:CDS 45.0%
GTCCTTTATTCGTCCTTCCA+TGG - Chr6:92986080-92986099 None:intergenic 45.0%
TGCCTTATACAACACCTGCA+TGG - Chr6:92990629-92990648 None:intergenic 45.0%
TTCAGACTGCAGTTCTGCTT+TGG + Chr6:92989331-92989350 MsG0680034694.01.T01:five_prime_UTR 45.0%
! ATGGCATCATCTCTAGGAGA+AGG - Chr6:92987990-92988009 None:intergenic 45.0%
! CACTTCTGGGGATCTTCAAA+AGG + Chr6:92989530-92989549 MsG0680034694.01.T01:CDS 45.0%
! CGATTTTCAACCAGTCCATC+TGG + Chr6:92986110-92986129 MsG0680034694.01.T01:intron 45.0%
! CTCAATGCAGGTGCTGTATA+AGG + Chr6:92985082-92985101 MsG0680034694.01.T01:five_prime_UTR 45.0%
! GAAAGCACGGTAAAGTTGCA+TGG - Chr6:92988009-92988028 None:intergenic 45.0%
! GGCTTTTCTTCTCGCACTTT+TGG + Chr6:92985258-92985277 MsG0680034694.01.T01:five_prime_UTR 45.0%
! TCATGGTGGGACTCACTTTA+TGG + Chr6:92987495-92987514 MsG0680034694.01.T01:intron 45.0%
! TCGAAGGTGTACTTCTGATG+TGG - Chr6:92986796-92986815 None:intergenic 45.0%
! TCGGTTTGTAAGGTGATGGT+TGG + Chr6:92988358-92988377 MsG0680034694.01.T01:intron 45.0%
! TGGCCACTTAGGTAAGTTGA+TGG + Chr6:92988541-92988560 MsG0680034694.01.T01:intron 45.0%
!!! TTAATTTAATTTCATAAAAT+CGG + Chr6:92988339-92988358 MsG0680034694.01.T01:intron 5.0%
AAGTGGGACCATTACCGCTT+AGG + Chr6:92986326-92986345 MsG0680034694.01.T01:intron 50.0%
AGAGAGAGAGAGAGAGAGAG+AGG - Chr6:92988077-92988096 None:intergenic 50.0%
ATTTCTACGTCACGTCCTGC+AGG - Chr6:92989366-92989385 None:intergenic 50.0%
CAACGTGACTTAAGTCACGC+AGG - Chr6:92987197-92987216 None:intergenic 50.0%
CATGCCTAATGTTGCTCCTC+TGG + Chr6:92988710-92988729 MsG0680034694.01.T01:intron 50.0%
CATGTTGTTGGGACTTCCAG+AGG - Chr6:92988729-92988748 None:intergenic 50.0%
CCGAAACATCTGGCAACTAC+AGG + Chr6:92990779-92990798 MsG0680034694.01.T01:CDS 50.0%
CCTAATGTGCTTCGAGAGTG+CGG - Chr6:92986051-92986070 None:intergenic 50.0%
CGAAGAAGAGGCAAGCTTCA+TGG + Chr6:92987010-92987029 MsG0680034694.01.T01:intron 50.0%
CGCACTCTCGAAGCACATTA+GGG + Chr6:92986049-92986068 MsG0680034694.01.T01:intron 50.0%
CTGCACATCCGGCAACTATA+GGG + Chr6:92985237-92985256 MsG0680034694.01.T01:five_prime_UTR 50.0%
GCAAAGGTTCTCTACAGAGC+TGG + Chr6:92990098-92990117 MsG0680034694.01.T01:CDS 50.0%
GCACTCTCGAAGCACATTAG+GGG + Chr6:92986050-92986069 MsG0680034694.01.T01:intron 50.0%
GCAGTTCACTCCGAAACATC+TGG + Chr6:92990769-92990788 MsG0680034694.01.T01:CDS 50.0%
GGCCATGACATCTCTTCATG+AGG - Chr6:92986482-92986501 None:intergenic 50.0%
GGTGGGACTCACTTTATGGT+AGG + Chr6:92987499-92987518 MsG0680034694.01.T01:intron 50.0%
TCTGCACATCCGGCAACTAT+AGG + Chr6:92985236-92985255 MsG0680034694.01.T01:five_prime_UTR 50.0%
TGCAGTTCACTCTGCACATC+CGG + Chr6:92985226-92985245 MsG0680034694.01.T01:five_prime_UTR 50.0%
TTTCTACGTCACGTCCTGCA+GGG - Chr6:92989365-92989384 None:intergenic 50.0%
! CCGCTCGACCATTTTCTATC+TGG + Chr6:92988521-92988540 MsG0680034694.01.T01:intron 50.0%
! GCATCATCTCTAGGAGAAGG+AGG - Chr6:92987987-92988006 None:intergenic 50.0%
! TAAGCGGTAATGGTCCCACT+TGG - Chr6:92986327-92986346 None:intergenic 50.0%
! TCTCTAGGAGAAGGAGGAAC+TGG - Chr6:92987981-92988000 None:intergenic 50.0%
!! GGATGTTGGCTCTACCAAGT+GGG + Chr6:92986310-92986329 MsG0680034694.01.T01:intron 50.0%
!! TGGATGTTGGCTCTACCAAG+TGG + Chr6:92986309-92986328 MsG0680034694.01.T01:intron 50.0%
!! TTAGCTCTGAACCAAGCGCT+TGG - Chr6:92989025-92989044 None:intergenic 50.0%
ACGCTCGTCCTAAGCGGTAA+TGG - Chr6:92986337-92986356 None:intergenic 55.0%
ATATGTAAGCACCCCTCGCC+TGG + Chr6:92990037-92990056 MsG0680034694.01.T01:CDS 55.0%
CAAACGAAGCAGCGCGCATT+TGG + Chr6:92990169-92990188 MsG0680034694.01.T01:CDS 55.0%
CCGCACTCTCGAAGCACATT+AGG + Chr6:92986048-92986067 MsG0680034694.01.T01:intron 55.0%
CTAGGAGAAGGAGGAACTGG+AGG - Chr6:92987978-92987997 None:intergenic 55.0%
CTCTTCACGCTCGTCCTAAG+CGG - Chr6:92986343-92986362 None:intergenic 55.0%
GAAGAGGCAAGCTTCATGGG+AGG + Chr6:92987014-92987033 MsG0680034694.01.T01:intron 55.0%
GAGAGAGAGGAGAGAGAGAG+AGG - Chr6:92988066-92988085 None:intergenic 55.0%
GGCGTCACCAATTCTCCAGT+CGG - Chr6:92991049-92991068 None:intergenic 55.0%
! AATGTGCTTCGAGAGTGCGG+TGG - Chr6:92986048-92986067 None:intergenic 55.0%
CTTTGGATGCCTGACCCTGC+AGG + Chr6:92989348-92989367 MsG0680034694.01.T01:exon 60.0%
GGAGGAGCTTTCCAAGCGCT+TGG + Chr6:92989011-92989030 MsG0680034694.01.T01:intron 60.0%
TATTGACCTCGGGGCCTTCC+AGG - Chr6:92990058-92990077 None:intergenic 60.0%
ACGTCACGTCCTGCAGGGTC+AGG - Chr6:92989360-92989379 None:intergenic 65.0%
GTAAGCACCCCTCGCCTGGA+AGG + Chr6:92990041-92990060 MsG0680034694.01.T01:CDS 65.0%
! CTTCGAGAGTGCGGTGGTGG+TGG - Chr6:92986042-92986061 None:intergenic 65.0%
! GTGCTTCGAGAGTGCGGTGG+TGG - Chr6:92986045-92986064 None:intergenic 65.0%
ACCTCGGGGCCTTCCAGGCG+AGG - Chr6:92990053-92990072 None:intergenic 75.0%
CCTCGGGGCCTTCCAGGCGA+GGG - Chr6:92990052-92990071 None:intergenic 75.0%
CTCGGGGCCTTCCAGGCGAG+GGG - Chr6:92990051-92990070 None:intergenic 75.0%
! CCCTCGCCTGGAAGGCCCCG+AGG + Chr6:92990049-92990068 MsG0680034694.01.T01:CDS 80.0%
Chromosome Type Strat End Strand Name
Chr6 gene 92985062 92991071 92985062 ID=MsG0680034694.01;Name=MsG0680034694.01
Chr6 mRNA 92985062 92991071 92985062 ID=MsG0680034694.01.T01;Parent=MsG0680034694.01;Name=MsG0680034694.01.T01;_AED=0.49;_eAED=0.62;_QI=348|0.75|0.6|1|0.75|0.6|5|234|235
Chr6 exon 92985062 92985354 92985062 ID=MsG0680034694.01.T01:exon:5618;Parent=MsG0680034694.01.T01
Chr6 exon 92989299 92989551 92989299 ID=MsG0680034694.01.T01:exon:5619;Parent=MsG0680034694.01.T01
Chr6 exon 92990026 92990241 92990026 ID=MsG0680034694.01.T01:exon:5620;Parent=MsG0680034694.01.T01
Chr6 exon 92990322 92990411 92990322 ID=MsG0680034694.01.T01:exon:5621;Parent=MsG0680034694.01.T01
Chr6 exon 92990634 92991071 92990634 ID=MsG0680034694.01.T01:exon:5622;Parent=MsG0680034694.01.T01
Chr6 five_prime_UTR 92985062 92985354 92985062 ID=MsG0680034694.01.T01:five_prime_utr;Parent=MsG0680034694.01.T01
Chr6 five_prime_UTR 92989299 92989353 92989299 ID=MsG0680034694.01.T01:five_prime_utr;Parent=MsG0680034694.01.T01
Chr6 CDS 92989354 92989551 92989354 ID=MsG0680034694.01.T01:cds;Parent=MsG0680034694.01.T01
Chr6 CDS 92990026 92990241 92990026 ID=MsG0680034694.01.T01:cds;Parent=MsG0680034694.01.T01
Chr6 CDS 92990322 92990411 92990322 ID=MsG0680034694.01.T01:cds;Parent=MsG0680034694.01.T01
Chr6 CDS 92990634 92990837 92990634 ID=MsG0680034694.01.T01:cds;Parent=MsG0680034694.01.T01
Chr6 three_prime_UTR 92990838 92991071 92990838 ID=MsG0680034694.01.T01:three_prime_utr;Parent=MsG0680034694.01.T01
Gene Sequence

>MsG0680034694.01.T01

ATGCCTGACCCTGCAGGACGTGACGTAGAAATCATTAGGAAGTCTCTAACTGTCGACAAAAACCTTGAAGCTGCTACTGAAGTTATATGTTCGCGTACTCCATCCCAACTCCAATATCTAAAACAGTTATACCATTCAAAGTTTGGCGTTTATCTCGAGCATGAAATTCAATCAAACACTTCTGGGGATCTTCAAAAGATCTTGCTCGCATATGTAAGCACCCCTCGCCTGGAAGGCCCCGAGGTCAATAGAGAAATCGCTGAGAAGGATGCAAAGGTTCTCTACAGAGCTGGGGAAAAAAAACTCGGAACTGATGAAAAGACTTTTATCCAAATATTCAGCAAACGAAGCAGCGCGCATTTGGTTTCCGTCAGTGCTTATTATCATGACATGTACGGTCACTCATTGAAGAAGGCAGTAAAGAAGGAAACATCGGGGAATTTCGGTCACGCACTTCTGACAATAATACAATGTGCTCATAATCCAGCAAAGTATTTTGCAAAGGTGTTGTATAAGGCAATGAAAGGTTTAGGGACTAATGATAACACACTCATAAGGGTCATTGTAACAAGGACTGAGATTGATATGAAATACATCAAAGCTGAATATGCAAAGAAATACAAGAAGACATTGAATGATGCAGTTCACTCCGAAACATCTGGCAACTACAGGGCTTTTCTTCTCGCACTTTTGGGTCCGAATAATTAG
Protein sequence

>MsG0680034694.01.T01

MPDPAGRDVEIIRKSLTVDKNLEAATEVICSRTPSQLQYLKQLYHSKFGVYLEHEIQSNTSGDLQKILLAYVSTPRLEGPEVNREIAEKDAKVLYRAGEKKLGTDEKTFIQIFSKRSSAHLVSVSAYYHDMYGHSLKKAVKKETSGNFGHALLTIIQCAHNPAKYFAKVLYKAMKGLGTNDNTLIRVIVTRTEIDMKYIKAEYAKKYKKTLNDAVHSETSGNYRAFLLALLGPNN*