Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280008184.01.T01 | XP_013441887.1 | 85.484 | 310 | 36 | 2 | 1 | 301 | 1 | 310 | 0 | 543 |
| MsG0280008184.01.T03 | XP_013441887.1 | 87.179 | 312 | 37 | 2 | 1 | 311 | 1 | 310 | 0 | 564 |
| MsG0280008184.01.T02 | XP_013441887.1 | 85.161 | 310 | 37 | 2 | 1 | 301 | 1 | 310 | 0 | 542 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280008184.01.T01 | Q7M443 | 34.797 | 296 | 162 | 12 | 15 | 300 | 1 | 275 | 1.27E-37 | 137 |
| MsG0280008184.01.T02 | Q7M443 | 34.459 | 296 | 163 | 12 | 15 | 300 | 1 | 275 | 7.77E-36 | 133 |
| MsG0280008184.01.T03 | Q7M443 | 33.66 | 306 | 162 | 12 | 15 | 310 | 1 | 275 | 3.80E-36 | 134 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280008184.01.T02 | A0A072TEX8 | 85.161 | 310 | 37 | 2 | 1 | 301 | 1 | 310 | 0.0 | 542 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0280008183.01 | MsG0280008184.01 | 0.963683 | 2.187054e-122 | 1.213730e-116 |
| MsG0280008184.01 | MsG0280008185.01 | 0.991106 | 6.359520e-186 | 4.803752e-179 |
| MsG0280008184.01 | MsG0280009667.01 | 0.807046 | 6.121133e-50 | 3.374740e-47 |
| MsG0280008184.01 | MsG0480022833.01 | 0.803926 | 2.761022e-49 | 1.405096e-46 |
| MsG0280008184.01 | MsG0780039912.01 | 0.804013 | 2.648366e-49 | 1.350704e-46 |
| MsG0280008184.01 | MsG0780040991.01 | 0.801073 | 1.069440e-48 | 5.060627e-46 |
| MsG0280008184.01 | MsG0880047398.01 | 0.809778 | 1.599231e-50 | 9.475230e-48 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280008184.01.T01 | MTR_0443s0040 | 85.484 | 310 | 36 | 2 | 1 | 301 | 1 | 310 | 0.0 | 543 |
| MsG0280008184.01.T01 | MTR_0062s0170 | 57.051 | 312 | 115 | 6 | 4 | 301 | 3 | 309 | 2.08e-106 | 312 |
| MsG0280008184.01.T01 | MTR_0062s0110 | 57.051 | 312 | 115 | 6 | 4 | 301 | 3 | 309 | 2.08e-106 | 312 |
| MsG0280008184.01.T01 | MTR_0062s0130 | 57.051 | 312 | 115 | 6 | 4 | 301 | 3 | 309 | 2.08e-106 | 312 |
| MsG0280008184.01.T01 | MTR_2g036240 | 57.051 | 312 | 115 | 6 | 4 | 301 | 3 | 309 | 2.08e-106 | 312 |
| MsG0280008184.01.T01 | MTR_2g036260 | 57.051 | 312 | 115 | 6 | 4 | 301 | 3 | 309 | 2.08e-106 | 312 |
| MsG0280008184.01.T01 | MTR_2g036290 | 57.051 | 312 | 115 | 6 | 4 | 301 | 3 | 309 | 2.08e-106 | 312 |
| MsG0280008184.01.T01 | MTR_8g046730 | 57.051 | 312 | 115 | 6 | 4 | 301 | 3 | 309 | 2.08e-106 | 312 |
| MsG0280008184.01.T01 | MTR_0002s1060 | 50.340 | 294 | 135 | 4 | 12 | 300 | 12 | 299 | 4.58e-92 | 275 |
| MsG0280008184.01.T01 | MTR_0062s0020 | 47.987 | 298 | 140 | 6 | 14 | 298 | 2 | 297 | 2.18e-90 | 271 |
| MsG0280008184.01.T01 | MTR_0062s0090 | 48.475 | 295 | 137 | 8 | 16 | 298 | 4 | 295 | 2.41e-82 | 251 |
| MsG0280008184.01.T01 | MTR_0062s0040 | 48.475 | 295 | 137 | 8 | 16 | 298 | 4 | 295 | 2.41e-82 | 251 |
| MsG0280008184.01.T01 | MTR_0062s0060 | 48.475 | 295 | 137 | 8 | 16 | 298 | 4 | 295 | 2.41e-82 | 251 |
| MsG0280008184.01.T01 | MTR_0002s0040 | 44.257 | 296 | 147 | 8 | 9 | 299 | 9 | 291 | 4.60e-75 | 232 |
| MsG0280008184.01.T01 | MTR_0263s0020 | 43.793 | 290 | 146 | 7 | 11 | 295 | 10 | 287 | 3.20e-72 | 224 |
| MsG0280008184.01.T01 | MTR_1457s0010 | 40.598 | 234 | 116 | 5 | 69 | 301 | 1 | 212 | 1.42e-46 | 156 |
| MsG0280008184.01.T01 | MTR_6g079630 | 32.472 | 271 | 158 | 9 | 16 | 277 | 34 | 288 | 3.13e-33 | 124 |
| MsG0280008184.01.T01 | MTR_2g096030 | 33.456 | 272 | 154 | 10 | 16 | 277 | 31 | 285 | 1.01e-30 | 117 |
| MsG0280008184.01.T01 | MTR_2g096040 | 32.453 | 265 | 154 | 11 | 15 | 269 | 3 | 252 | 6.88e-30 | 114 |
| MsG0280008184.01.T03 | MTR_0443s0040 | 87.179 | 312 | 37 | 2 | 1 | 311 | 1 | 310 | 0.0 | 564 |
| MsG0280008184.01.T03 | MTR_0062s0170 | 58.333 | 312 | 121 | 6 | 4 | 311 | 3 | 309 | 2.17e-111 | 325 |
| MsG0280008184.01.T03 | MTR_0062s0110 | 58.333 | 312 | 121 | 6 | 4 | 311 | 3 | 309 | 2.17e-111 | 325 |
| MsG0280008184.01.T03 | MTR_0062s0130 | 58.333 | 312 | 121 | 6 | 4 | 311 | 3 | 309 | 2.17e-111 | 325 |
| MsG0280008184.01.T03 | MTR_2g036240 | 58.333 | 312 | 121 | 6 | 4 | 311 | 3 | 309 | 2.17e-111 | 325 |
| MsG0280008184.01.T03 | MTR_2g036260 | 58.333 | 312 | 121 | 6 | 4 | 311 | 3 | 309 | 2.17e-111 | 325 |
| MsG0280008184.01.T03 | MTR_2g036290 | 58.333 | 312 | 121 | 6 | 4 | 311 | 3 | 309 | 2.17e-111 | 325 |
| MsG0280008184.01.T03 | MTR_8g046730 | 58.333 | 312 | 121 | 6 | 4 | 311 | 3 | 309 | 2.17e-111 | 325 |
| MsG0280008184.01.T03 | MTR_0062s0020 | 47.883 | 307 | 137 | 7 | 14 | 308 | 2 | 297 | 8.42e-91 | 273 |
| MsG0280008184.01.T03 | MTR_0002s1060 | 48.675 | 302 | 138 | 4 | 12 | 310 | 12 | 299 | 1.12e-90 | 272 |
| MsG0280008184.01.T03 | MTR_0062s0090 | 47.213 | 305 | 136 | 10 | 16 | 308 | 4 | 295 | 1.71e-79 | 244 |
| MsG0280008184.01.T03 | MTR_0062s0040 | 47.213 | 305 | 136 | 10 | 16 | 308 | 4 | 295 | 1.71e-79 | 244 |
| MsG0280008184.01.T03 | MTR_0062s0060 | 47.213 | 305 | 136 | 10 | 16 | 308 | 4 | 295 | 1.71e-79 | 244 |
| MsG0280008184.01.T03 | MTR_0002s0040 | 43.564 | 303 | 149 | 8 | 9 | 309 | 9 | 291 | 1.18e-74 | 231 |
| MsG0280008184.01.T03 | MTR_0263s0020 | 43.813 | 299 | 146 | 8 | 9 | 305 | 9 | 287 | 6.53e-72 | 224 |
| MsG0280008184.01.T03 | MTR_1457s0010 | 38.934 | 244 | 116 | 5 | 69 | 311 | 1 | 212 | 8.60e-45 | 152 |
| MsG0280008184.01.T03 | MTR_6g079630 | 31.317 | 281 | 158 | 9 | 16 | 287 | 34 | 288 | 1.55e-31 | 120 |
| MsG0280008184.01.T03 | MTR_2g096030 | 32.270 | 282 | 154 | 10 | 16 | 287 | 31 | 285 | 3.76e-29 | 113 |
| MsG0280008184.01.T03 | MTR_2g096040 | 30.909 | 275 | 155 | 11 | 15 | 279 | 3 | 252 | 2.20e-28 | 110 |
| MsG0280008184.01.T02 | MTR_0443s0040 | 85.161 | 310 | 37 | 2 | 1 | 301 | 1 | 310 | 0.0 | 542 |
| MsG0280008184.01.T02 | MTR_0062s0170 | 55.911 | 313 | 117 | 7 | 4 | 301 | 3 | 309 | 1.65e-107 | 315 |
| MsG0280008184.01.T02 | MTR_0062s0110 | 55.911 | 313 | 117 | 7 | 4 | 301 | 3 | 309 | 1.65e-107 | 315 |
| MsG0280008184.01.T02 | MTR_0062s0130 | 55.911 | 313 | 117 | 7 | 4 | 301 | 3 | 309 | 1.65e-107 | 315 |
| MsG0280008184.01.T02 | MTR_2g036240 | 55.911 | 313 | 117 | 7 | 4 | 301 | 3 | 309 | 1.65e-107 | 315 |
| MsG0280008184.01.T02 | MTR_2g036260 | 55.911 | 313 | 117 | 7 | 4 | 301 | 3 | 309 | 1.65e-107 | 315 |
| MsG0280008184.01.T02 | MTR_2g036290 | 55.911 | 313 | 117 | 7 | 4 | 301 | 3 | 309 | 1.65e-107 | 315 |
| MsG0280008184.01.T02 | MTR_8g046730 | 55.911 | 313 | 117 | 7 | 4 | 301 | 3 | 309 | 1.65e-107 | 315 |
| MsG0280008184.01.T02 | MTR_0002s1060 | 49.660 | 294 | 137 | 4 | 12 | 300 | 12 | 299 | 3.99e-89 | 268 |
| MsG0280008184.01.T02 | MTR_0062s0020 | 47.333 | 300 | 139 | 7 | 14 | 298 | 2 | 297 | 1.01e-87 | 264 |
| MsG0280008184.01.T02 | MTR_0062s0090 | 47.458 | 295 | 140 | 8 | 16 | 298 | 4 | 295 | 3.00e-79 | 243 |
| MsG0280008184.01.T02 | MTR_0062s0040 | 47.458 | 295 | 140 | 8 | 16 | 298 | 4 | 295 | 3.00e-79 | 243 |
| MsG0280008184.01.T02 | MTR_0062s0060 | 47.458 | 295 | 140 | 8 | 16 | 298 | 4 | 295 | 3.00e-79 | 243 |
| MsG0280008184.01.T02 | MTR_0002s0040 | 43.919 | 296 | 148 | 8 | 9 | 299 | 9 | 291 | 3.50e-74 | 229 |
| MsG0280008184.01.T02 | MTR_0263s0020 | 43.448 | 290 | 147 | 7 | 11 | 295 | 10 | 287 | 3.25e-71 | 222 |
| MsG0280008184.01.T02 | MTR_1457s0010 | 40.171 | 234 | 117 | 5 | 69 | 301 | 1 | 212 | 2.03e-46 | 155 |
| MsG0280008184.01.T02 | MTR_6g079630 | 32.841 | 271 | 157 | 10 | 16 | 277 | 34 | 288 | 1.44e-31 | 119 |
| MsG0280008184.01.T02 | MTR_2g096030 | 33.088 | 272 | 155 | 10 | 16 | 277 | 31 | 285 | 4.55e-29 | 113 |
| MsG0280008184.01.T02 | MTR_2g096040 | 32.075 | 265 | 155 | 11 | 15 | 269 | 3 | 252 | 4.78e-29 | 112 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 63 sgRNAs with CRISPR-Local
Find 76 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAAAATCATCTAAAGTTTC+TGG | 0.145221 | 2:+26855230 | None:intergenic |
| AATCAATTCCACTTCATTCT+AGG | 0.205618 | 2:-26855182 | MsG0280008184.01.T03:CDS |
| CCCACTACCACAAATTGTTT+TGG | 0.245343 | 2:-26854716 | MsG0280008184.01.T03:CDS |
| TGTAGCTAGTAATCAATTAT+TGG | 0.249179 | 2:+26854383 | None:intergenic |
| ATTCAATCCTAAGGAGAAAA+AGG | 0.297710 | 2:-26855000 | MsG0280008184.01.T03:CDS |
| GGACACATATTCCATGGATT+TGG | 0.302531 | 2:+26854764 | None:intergenic |
| TTACGGTGAGCTTAAACTTT+TGG | 0.347612 | 2:-26854592 | MsG0280008184.01.T03:CDS |
| GATATGTCTGATCGAGCTTA+TGG | 0.361529 | 2:+26854962 | None:intergenic |
| CCCAAAACAATTTGTGGTAG+TGG | 0.365132 | 2:+26854715 | None:intergenic |
| TACCTTGTCAATGATGATTC+TGG | 0.380807 | 2:-26854921 | MsG0280008184.01.T03:CDS |
| CGGGACATTTCGTTCGCGAT+TGG | 0.385507 | 2:-26855124 | MsG0280008184.01.T03:CDS |
| ACAATTTGTGGTAGTGGGCT+TGG | 0.408360 | 2:+26854721 | None:intergenic |
| CACTGCACTAGCATAATTGA+TGG | 0.434540 | 2:-26854891 | MsG0280008184.01.T03:CDS |
| AATCAACTAATAACGGATTA+CGG | 0.451454 | 2:-26854609 | MsG0280008184.01.T03:CDS |
| ATCATCAAACTCATCCTTTG+AGG | 0.453286 | 2:+26854638 | None:intergenic |
| CGGTTCATCTTAGTATCAGC+TGG | 0.454457 | 2:+26854552 | None:intergenic |
| GAAAATCATCTAAAGTTTCT+GGG | 0.456174 | 2:+26855231 | None:intergenic |
| TCATCATTGATGATCTCAAC+AGG | 0.458322 | 2:+26855209 | None:intergenic |
| AGCATTTCCTCCAAGATGTA+AGG | 0.467593 | 2:+26854420 | None:intergenic |
| TGTGGTCCCAAAACAATTTG+TGG | 0.468651 | 2:+26854709 | None:intergenic |
| GATGTCATTGCTCGGTGGGT+TGG | 0.481116 | 2:+26854446 | None:intergenic |
| TATATCGATTCTAGTGTGAC+TGG | 0.486159 | 2:-26854849 | MsG0280008184.01.T03:CDS |
| GCCACTGAGGTGTATAAAGA+TGG | 0.489071 | 2:-26855155 | MsG0280008184.01.T03:CDS |
| AACCGAGAGGTGTTCATTGA+GGG | 0.499384 | 2:-26854534 | MsG0280008184.01.T03:CDS |
| CGCCCTCAATGAACACCTCT+CGG | 0.504404 | 2:+26854532 | None:intergenic |
| TGACATCGAGCCTTACATCT+TGG | 0.507062 | 2:-26854430 | MsG0280008184.01.T03:CDS |
| TCTCTACAATCAACTAATAA+CGG | 0.510522 | 2:-26854616 | MsG0280008184.01.T03:CDS |
| CCAAAACAATTTGTGGTAGT+GGG | 0.514829 | 2:+26854716 | None:intergenic |
| TATAAAGATGGAAAAGGAAC+GGG | 0.518546 | 2:-26855143 | MsG0280008184.01.T03:CDS |
| CTAGTAATCAATTATTGGTA+AGG | 0.518596 | 2:+26854388 | None:intergenic |
| ATCAACAGCAAATCACTCCT+TGG | 0.519679 | 2:-26854498 | MsG0280008184.01.T03:CDS |
| TAAATATCCATTCAATCCTA+AGG | 0.520789 | 2:-26855009 | MsG0280008184.01.T03:CDS |
| GCTGACTTCTCCAACTGCAT+TGG | 0.521072 | 2:-26854825 | MsG0280008184.01.T03:CDS |
| AATAACTTGTCCAATGCAGT+TGG | 0.521593 | 2:+26854815 | None:intergenic |
| ATTTGTGGTAGTGGGCTTGG+AGG | 0.527426 | 2:+26854724 | None:intergenic |
| GCTCGATGTCATTGCTCGGT+GGG | 0.532171 | 2:+26854442 | None:intergenic |
| GAGGAGCTCTGTCGGAGCAA+TGG | 0.538177 | 2:+26854743 | None:intergenic |
| ATGAAGGTTATGATAACTAT+CGG | 0.552996 | 2:-26855044 | MsG0280008184.01.T03:CDS |
| CATCGAGCCTTACATCTTGG+AGG | 0.554478 | 2:-26854427 | MsG0280008184.01.T03:CDS |
| TCGAGAATACATTGGCGTGA+AGG | 0.556428 | 2:-26855258 | MsG0280008184.01.T03:CDS |
| GAAAGAACATAAGAATATGA+AGG | 0.556511 | 2:-26855060 | MsG0280008184.01.T03:CDS |
| TAAGCATGTATCCAAATCCA+TGG | 0.557313 | 2:-26854775 | MsG0280008184.01.T03:CDS |
| CATCTTAGTATCAGCTGGAT+CGG | 0.557541 | 2:+26854557 | None:intergenic |
| TGAATGGATATTTAGTGCCA+TGG | 0.560003 | 2:+26855018 | None:intergenic |
| GAGGTGTATAAAGATGGAAA+AGG | 0.564302 | 2:-26855149 | MsG0280008184.01.T03:CDS |
| GAACCGAGAGGTGTTCATTG+AGG | 0.566347 | 2:-26854535 | MsG0280008184.01.T03:CDS |
| CAATCAAACTATATCCTCAA+AGG | 0.567378 | 2:-26854652 | MsG0280008184.01.T03:CDS |
| AGCAATGGACACATATTCCA+TGG | 0.567858 | 2:+26854758 | None:intergenic |
| GGCTCGATGTCATTGCTCGG+TGG | 0.574776 | 2:+26854441 | None:intergenic |
| ATATCGATTCTAGTGTGACT+GGG | 0.576037 | 2:-26854848 | MsG0280008184.01.T03:CDS |
| TGGGCTTGGAGGAGCTCTGT+CGG | 0.577415 | 2:+26854735 | None:intergenic |
| ATGATAACTATCGGAGGCCA+TGG | 0.579102 | 2:-26855035 | MsG0280008184.01.T03:CDS |
| TAAGGCTCGATGTCATTGCT+CGG | 0.600452 | 2:+26854438 | None:intergenic |
| AGTTATTAAACATCTCAAGA+AGG | 0.601516 | 2:-26854799 | MsG0280008184.01.T03:CDS |
| GTATAAAGATGGAAAAGGAA+CGG | 0.613441 | 2:-26855144 | MsG0280008184.01.T03:CDS |
| TGGCGAAGCCTAGAATGAAG+TGG | 0.614487 | 2:+26855174 | None:intergenic |
| TACCAGAATCATCATTGACA+AGG | 0.665409 | 2:+26854919 | None:intergenic |
| TCCATCTTTATACACCTCAG+TGG | 0.670679 | 2:+26855154 | None:intergenic |
| CATCAATTATGCTAGTGCAG+TGG | 0.677859 | 2:+26854892 | None:intergenic |
| CATTCTAGGCTTCGCCACTG+AGG | 0.701525 | 2:-26855168 | MsG0280008184.01.T03:CDS |
| AAGGTTATGATAACTATCGG+AGG | 0.701816 | 2:-26855041 | MsG0280008184.01.T03:CDS |
| TATCGATTCTAGTGTGACTG+GGG | 0.708158 | 2:-26854847 | MsG0280008184.01.T03:CDS |
| TGATACTAAGATGAACCGAG+AGG | 0.777827 | 2:-26854547 | MsG0280008184.01.T03:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | AGTTATTAAACATCTCAAGA+AGG | - | Chr2:26854904-26854923 | MsG0280008184.01.T03:CDS | 25.0% |
| ! | ATGAAGGTTATGATAACTAT+CGG | - | Chr2:26854659-26854678 | MsG0280008184.01.T03:CDS | 25.0% |
| ! | ATGTATTCTCGAAAAATTGT+TGG | + | Chr2:26854437-26854456 | None:intergenic | 25.0% |
| ! | GAAAGAACATAAGAATATGA+AGG | - | Chr2:26854643-26854662 | MsG0280008184.01.T03:CDS | 25.0% |
| ! | TAAATATCCATTCAATCCTA+AGG | - | Chr2:26854694-26854713 | MsG0280008184.01.T03:CDS | 25.0% |
| ! | TCTCTACAATCAACTAATAA+CGG | - | Chr2:26855087-26855106 | MsG0280008184.01.T03:CDS | 25.0% |
| ! | TGTATTCTCGAAAAATTGTT+GGG | + | Chr2:26854436-26854455 | None:intergenic | 25.0% |
| !! | GAAAATCATCTAAAGTTTCT+GGG | + | Chr2:26854475-26854494 | None:intergenic | 25.0% |
| !!! | AATCAACTAATAACGGATTA+CGG | - | Chr2:26855094-26855113 | MsG0280008184.01.T03:CDS | 25.0% |
| !!! | ACAATTTTTCGAGAATACAT+TGG | - | Chr2:26854437-26854456 | MsG0280008184.01.T03:CDS | 25.0% |
| AAAAATTGTTGGGCTCAAAA+CGG | + | Chr2:26854426-26854445 | None:intergenic | 30.0% | |
| AATCAATTCCACTTCATTCT+AGG | - | Chr2:26854521-26854540 | MsG0280008184.01.T03:CDS | 30.0% | |
| ATTCAATCCTAAGGAGAAAA+AGG | - | Chr2:26854703-26854722 | MsG0280008184.01.T03:CDS | 30.0% | |
| CAATCAAACTATATCCTCAA+AGG | - | Chr2:26855051-26855070 | MsG0280008184.01.T03:CDS | 30.0% | |
| GTATAAAGATGGAAAAGGAA+CGG | - | Chr2:26854559-26854578 | MsG0280008184.01.T03:CDS | 30.0% | |
| TATAAAGATGGAAAAGGAAC+GGG | - | Chr2:26854560-26854579 | MsG0280008184.01.T03:CDS | 30.0% | |
| ! | GGAAAATCATCTAAAGTTTC+TGG | + | Chr2:26854476-26854495 | None:intergenic | 30.0% |
| ! | TTTTTCTCCTTAGGATTGAA+TGG | + | Chr2:26854704-26854723 | None:intergenic | 30.0% |
| !! | CATAGTTGATATCCATTTTG+TGG | + | Chr2:26855015-26855034 | None:intergenic | 30.0% |
| !!! | TGTGTTTGAACACTTTTTCT+GGG | + | Chr2:26854622-26854641 | None:intergenic | 30.0% |
| !!! | TTGTGTTTGAACACTTTTTC+TGG | + | Chr2:26854623-26854642 | None:intergenic | 30.0% |
| AAGGTTATGATAACTATCGG+AGG | - | Chr2:26854662-26854681 | MsG0280008184.01.T03:CDS | 35.0% | |
| ATCATCAAACTCATCCTTTG+AGG | + | Chr2:26855068-26855087 | None:intergenic | 35.0% | |
| ATCCTAAGGAGAAAAAGGTA+TGG | - | Chr2:26854708-26854727 | MsG0280008184.01.T03:CDS | 35.0% | |
| CCAAAACAATTTGTGGTAGT+GGG | + | Chr2:26854990-26855009 | None:intergenic | 35.0% | |
| GAGGTGTATAAAGATGGAAA+AGG | - | Chr2:26854554-26854573 | MsG0280008184.01.T03:CDS | 35.0% | |
| TAAGCATGTATCCAAATCCA+TGG | - | Chr2:26854928-26854947 | MsG0280008184.01.T03:CDS | 35.0% | |
| TACCAGAATCATCATTGACA+AGG | + | Chr2:26854787-26854806 | None:intergenic | 35.0% | |
| TACCTTGTCAATGATGATTC+TGG | - | Chr2:26854782-26854801 | MsG0280008184.01.T03:CDS | 35.0% | |
| TGAATGGATATTTAGTGCCA+TGG | + | Chr2:26854688-26854707 | None:intergenic | 35.0% | |
| ! | AATAACTTGTCCAATGCAGT+TGG | + | Chr2:26854891-26854910 | None:intergenic | 35.0% |
| ! | ATCCATACCTTTTTCTCCTT+AGG | + | Chr2:26854713-26854732 | None:intergenic | 35.0% |
| ! | CCACTACCACAAATTGTTTT+GGG | - | Chr2:26854988-26855007 | MsG0280008184.01.T03:CDS | 35.0% |
| ! | TCATCATTGATGATCTCAAC+AGG | + | Chr2:26854497-26854516 | None:intergenic | 35.0% |
| ! | TTACGGTGAGCTTAAACTTT+TGG | - | Chr2:26855111-26855130 | MsG0280008184.01.T03:CDS | 35.0% |
| !! | ATATCGATTCTAGTGTGACT+GGG | - | Chr2:26854855-26854874 | MsG0280008184.01.T03:CDS | 35.0% |
| !! | TATATCGATTCTAGTGTGAC+TGG | - | Chr2:26854854-26854873 | MsG0280008184.01.T03:CDS | 35.0% |
| !!! | ATTGTTTTGGGACCACAAAA+TGG | - | Chr2:26855000-26855019 | MsG0280008184.01.T03:CDS | 35.0% |
| AGCAATGGACACATATTCCA+TGG | + | Chr2:26854948-26854967 | None:intergenic | 40.0% | |
| AGCATTTCCTCCAAGATGTA+AGG | + | Chr2:26855286-26855305 | None:intergenic | 40.0% | |
| ATCAACAGCAAATCACTCCT+TGG | - | Chr2:26855205-26855224 | MsG0280008184.01.T03:CDS | 40.0% | |
| CACTCCAAACAAAAAGTCCA+AGG | + | Chr2:26855225-26855244 | None:intergenic | 40.0% | |
| CACTGCACTAGCATAATTGA+TGG | - | Chr2:26854812-26854831 | MsG0280008184.01.T03:CDS | 40.0% | |
| CATCAATTATGCTAGTGCAG+TGG | + | Chr2:26854814-26854833 | None:intergenic | 40.0% | |
| CATCTTAGTATCAGCTGGAT+CGG | + | Chr2:26855149-26855168 | None:intergenic | 40.0% | |
| CCCAAAACAATTTGTGGTAG+TGG | + | Chr2:26854991-26855010 | None:intergenic | 40.0% | |
| GATATGTCTGATCGAGCTTA+TGG | + | Chr2:26854744-26854763 | None:intergenic | 40.0% | |
| GGACACATATTCCATGGATT+TGG | + | Chr2:26854942-26854961 | None:intergenic | 40.0% | |
| TCCATCTTTATACACCTCAG+TGG | + | Chr2:26854552-26854571 | None:intergenic | 40.0% | |
| TGATACTAAGATGAACCGAG+AGG | - | Chr2:26855156-26855175 | MsG0280008184.01.T03:CDS | 40.0% | |
| TGTGGTCCCAAAACAATTTG+TGG | + | Chr2:26854997-26855016 | None:intergenic | 40.0% | |
| ! | CACTCCTTGGACTTTTTGTT+TGG | - | Chr2:26855218-26855237 | MsG0280008184.01.T03:CDS | 40.0% |
| ! | CCCACTACCACAAATTGTTT+TGG | - | Chr2:26854987-26855006 | MsG0280008184.01.T03:CDS | 40.0% |
| !! | TATCGATTCTAGTGTGACTG+GGG | - | Chr2:26854856-26854875 | MsG0280008184.01.T03:CDS | 40.0% |
| ATGATAACTATCGGAGGCCA+TGG | - | Chr2:26854668-26854687 | MsG0280008184.01.T03:CDS | 45.0% | |
| CGGTTCATCTTAGTATCAGC+TGG | + | Chr2:26855154-26855173 | None:intergenic | 45.0% | |
| GCCACTGAGGTGTATAAAGA+TGG | - | Chr2:26854548-26854567 | MsG0280008184.01.T03:CDS | 45.0% | |
| TAAGGCTCGATGTCATTGCT+CGG | + | Chr2:26855268-26855287 | None:intergenic | 45.0% | |
| TCGAGAATACATTGGCGTGA+AGG | - | Chr2:26854445-26854464 | MsG0280008184.01.T03:CDS | 45.0% | |
| TGACATCGAGCCTTACATCT+TGG | - | Chr2:26855273-26855292 | MsG0280008184.01.T03:CDS | 45.0% | |
| ! | GGTGAGCTTAAACTTTTGGC+AGG | - | Chr2:26855115-26855134 | MsG0280008184.01.T03:CDS | 45.0% |
| !! | AACCGAGAGGTGTTCATTGA+GGG | - | Chr2:26855169-26855188 | MsG0280008184.01.T03:CDS | 45.0% |
| !! | ACAATTTGTGGTAGTGGGCT+TGG | + | Chr2:26854985-26855004 | None:intergenic | 45.0% |
| CATCGAGCCTTACATCTTGG+AGG | - | Chr2:26855276-26855295 | MsG0280008184.01.T03:CDS | 50.0% | |
| TGGCGAAGCCTAGAATGAAG+TGG | + | Chr2:26854532-26854551 | None:intergenic | 50.0% | |
| ! | GCTGACTTCTCCAACTGCAT+TGG | - | Chr2:26854878-26854897 | MsG0280008184.01.T03:CDS | 50.0% |
| !! | ATTTGTGGTAGTGGGCTTGG+AGG | + | Chr2:26854982-26855001 | None:intergenic | 50.0% |
| !! | GAACCGAGAGGTGTTCATTG+AGG | - | Chr2:26855168-26855187 | MsG0280008184.01.T03:CDS | 50.0% |
| CATTCTAGGCTTCGCCACTG+AGG | - | Chr2:26854535-26854554 | MsG0280008184.01.T03:CDS | 55.0% | |
| CGCCCTCAATGAACACCTCT+CGG | + | Chr2:26855174-26855193 | None:intergenic | 55.0% | |
| CGGGACATTTCGTTCGCGAT+TGG | - | Chr2:26854579-26854598 | MsG0280008184.01.T03:CDS | 55.0% | |
| GCTCGATGTCATTGCTCGGT+GGG | + | Chr2:26855264-26855283 | None:intergenic | 55.0% | |
| ! | GATGTCATTGCTCGGTGGGT+TGG | + | Chr2:26855260-26855279 | None:intergenic | 55.0% |
| GAGGAGCTCTGTCGGAGCAA+TGG | + | Chr2:26854963-26854982 | None:intergenic | 60.0% | |
| GGCTCGATGTCATTGCTCGG+TGG | + | Chr2:26855265-26855284 | None:intergenic | 60.0% | |
| TGGGCTTGGAGGAGCTCTGT+CGG | + | Chr2:26854971-26854990 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr2 | gene | 26854395 | 26855330 | 26854395 | ID=MsG0280008184.01;Name=MsG0280008184.01 |
| Chr2 | mRNA | 26854395 | 26855330 | 26854395 | ID=MsG0280008184.01.T01;Parent=MsG0280008184.01;Name=MsG0280008184.01.T01;_AED=0.02;_eAED=0.02;_QI=0|0|0|1|0|0|2|0|301 |
| Chr2 | exon | 26854395 | 26854902 | 26854395 | ID=MsG0280008184.01.T01:exon:18771;Parent=MsG0280008184.01.T01 |
| Chr2 | exon | 26854933 | 26855330 | 26854933 | ID=MsG0280008184.01.T01:exon:18770;Parent=MsG0280008184.01.T01 |
| Chr2 | CDS | 26854933 | 26855330 | 26854933 | ID=MsG0280008184.01.T01:cds;Parent=MsG0280008184.01.T01 |
| Chr2 | CDS | 26854395 | 26854902 | 26854395 | ID=MsG0280008184.01.T01:cds;Parent=MsG0280008184.01.T01 |
| Chr2 | mRNA | 26854395 | 26855330 | 26854395 | ID=MsG0280008184.01.T02;Parent=MsG0280008184.01;Name=MsG0280008184.01.T02;_AED=0.02;_eAED=0.02;_QI=0|0|0|1|0|0|2|0|301 |
| Chr2 | exon | 26854395 | 26854891 | 26854395 | ID=MsG0280008184.01.T02:exon:18773;Parent=MsG0280008184.01.T02 |
| Chr2 | exon | 26854922 | 26855330 | 26854922 | ID=MsG0280008184.01.T02:exon:18772;Parent=MsG0280008184.01.T02 |
| Chr2 | CDS | 26854922 | 26855330 | 26854922 | ID=MsG0280008184.01.T02:cds;Parent=MsG0280008184.01.T02 |
| Chr2 | CDS | 26854395 | 26854891 | 26854395 | ID=MsG0280008184.01.T02:cds;Parent=MsG0280008184.01.T02 |
| Chr2 | mRNA | 26854395 | 26855330 | 26854395 | ID=MsG0280008184.01.T03;Parent=MsG0280008184.01;Name=MsG0280008184.01.T03;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|311 |
| Chr2 | exon | 26854395 | 26855330 | 26854395 | ID=MsG0280008184.01.T03:exon:18774;Parent=MsG0280008184.01.T03 |
| Chr2 | CDS | 26854395 | 26855330 | 26854395 | ID=MsG0280008184.01.T03:cds;Parent=MsG0280008184.01.T03 |
| Gene Sequence |
| Protein sequence |
