AlfalfaGEDB | MsG0280009667.01

M. sativa cultivar ZhongmuNo.1 / MsG0280009667.01

KEGG: K03234
GO: GO:0003924 GO:0005525
PFAM: PF00009 PF00679 PF03144 PF03764 PF14492

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280009667.01.T01	XP_003596187.1	97.031	842	25	0	18	859	2	843	0	1709

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280009667.01.T01	Q9ASR1	84.917	842	127	0	18	859	2	843	0	1523

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047831.01	MsG0280009667.01	0.809630	1.720943e-50	1.015675e-47
MsG0080047910.01	MsG0280009667.01	-0.801892	7.267294e-49	3.510862e-46
MsG0080048036.01	MsG0280009667.01	0.853659	2.065262e-61	4.495215e-58
MsG0080048059.01	MsG0280009667.01	-0.819001	1.460714e-52	1.110640e-49
MsG0080048111.01	MsG0280009667.01	0.809221	2.105717e-50	1.229244e-47
MsG0080048256.01	MsG0280009667.01	0.840145	1.037190e-57	1.464160e-54
MsG0080048301.01	MsG0280009667.01	0.837756	4.306750e-57	5.650338e-54
MsG0080048347.01	MsG0280009667.01	0.841444	4.734904e-58	6.959311e-55
MsG0080048352.01	MsG0280009667.01	0.824639	7.236483e-54	6.447823e-51
MsG0080048611.01	MsG0280009667.01	-0.801731	7.841757e-49	3.772629e-46

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280009667.01.T01	MTR_2g069320	97.031	842	25	0	18	859	2	843	0.0	1709
MsG0280009667.01.T01	MTR_2g069310	86.105	842	117	0	18	859	2	843	0.0	1543
MsG0280009667.01.T01	MTR_2g069050	85.986	842	118	0	18	859	2	843	0.0	1542
MsG0280009667.01.T01	MTR_1g048000	85.748	842	120	0	18	859	2	843	0.0	1535
MsG0280009667.01.T01	MTR_4g116430	39.188	837	472	11	36	849	140	962	0.0	610
MsG0280009667.01.T01	MTR_4g119340	30.408	980	477	24	32	826	11	970	6.37e-138	436
MsG0280009667.01.T01	MTR_4g101750	24.819	830	451	26	21	822	79	763	1.72e-39	157
MsG0280009667.01.T01	MTR_4g101750	24.519	779	416	24	21	771	79	713	6.94e-34	140
MsG0280009667.01.T01	MTR_7g009740	39.535	172	96	4	12	178	40	208	2.24e-27	119
MsG0280009667.01.T01	MTR_3g097250	42.361	144	70	2	34	177	82	212	4.71e-23	105

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280009667.01.T01	AT1G56070	84.917	842	127	0	18	859	2	843	0.0	1523
MsG0280009667.01.T01	AT1G56070	84.917	842	127	0	18	859	2	843	0.0	1523
MsG0280009667.01.T01	AT1G56070	84.917	842	127	0	18	859	2	843	0.0	1523
MsG0280009667.01.T01	AT3G12915	76.722	842	141	4	18	859	2	788	0.0	1335
MsG0280009667.01.T01	AT1G06220	38.305	838	480	11	35	849	138	961	0.0	600
MsG0280009667.01.T01	AT1G06220	38.305	838	480	11	35	849	138	961	0.0	600
MsG0280009667.01.T01	AT1G06220	38.305	838	480	11	35	849	138	961	0.0	600
MsG0280009667.01.T01	AT5G25230	37.783	839	483	10	35	849	124	947	0.0	588
MsG0280009667.01.T01	AT5G25230	37.783	839	483	10	35	849	124	947	0.0	588
MsG0280009667.01.T01	AT3G22980	31.346	973	465	27	35	826	9	959	6.19e-139	438

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Find 213 sgRNAs with CRISPR-Local

Find 347 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTTCATAGCTCTAATA+GGG	0.423620	2:-55961250	None:intergenic
AAAATATTGTCTGACGAGTT+TGG	0.324390	2:+55961674	MsG0280009667.01.T01:CDS
AAAGAAGCAAGAAACGGTGG+AGG	0.649502	2:+55961133	MsG0280009667.01.T01:CDS
AAAGCCGAGACTTCTAGAGC+CGG	0.630186	2:+55961985	MsG0280009667.01.T01:CDS
AAAGTGGGGTGTTAGGCCTC+TGG	0.487029	2:-55962099	None:intergenic
AACCTACCATTATCAGAGGC+AGG	0.517831	2:-55960975	None:intergenic
AACTCTAACTGATTCTCTTG+TGG	0.573023	2:+55959921	MsG0280009667.01.T01:CDS
AAGAGGTTGCAGGAGAGGTT+AGG	0.455339	2:+55959965	MsG0280009667.01.T01:CDS
AAGATGATGAATAGGCTTTG+GGG	0.662861	2:+55960537	MsG0280009667.01.T01:CDS
AAGATGTATGCTTCAAAGTT+TGG	0.309421	2:+55960501	MsG0280009667.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATATTGTCTGACGAGTT+TGG	+	Chr2:55961674-55961693	MsG0280009667.01.T01:CDS	30.0%
AAGACAACCAAAATTACATG+TGG	-	Chr2:55958293-55958312	None:intergenic	30.0%
AAGATGTATGCTTCAAAGTT+TGG	+	Chr2:55960501-55960520	MsG0280009667.01.T01:CDS	30.0%
ACAATATCTGAACGAAATCA+AGG	+	Chr2:55961784-55961803	MsG0280009667.01.T01:CDS	30.0%
ACATATGAAGATGCTTTACT+TGG	+	Chr2:55960393-55960412	MsG0280009667.01.T01:CDS	30.0%
ACTTTGTATGAATGATCAGA+AGG	+	Chr2:55960674-55960693	MsG0280009667.01.T01:CDS	30.0%
AGACAACCAAAATTACATGT+GGG	-	Chr2:55958292-55958311	None:intergenic	30.0%
AGAGAAAGAATTAACAGGAA+AGG	+	Chr2:55960746-55960765	MsG0280009667.01.T01:CDS	30.0%
AGTGTTCTTAATCAGAAAAG+AGG	+	Chr2:55962058-55962077	MsG0280009667.01.T01:CDS	30.0%
AGTTCAATAATCTGCTTGAT+TGG	-	Chr2:55960657-55960676	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	55956953	55962354	55956953	ID=MsG0280009667.01;Name=MsG0280009667.01
Chr2	mRNA	55956953	55962354	55956953	ID=MsG0280009667.01.T01;Parent=MsG0280009667.01;Name=MsG0280009667.01.T01;_AED=0.49;_eAED=0.50;_QI=0\|0\|0\|1\|1\|1\|3\|0\|859
Chr2	exon	55956953	55957003	55956953	ID=MsG0280009667.01.T01:exon:5937;Parent=MsG0280009667.01.T01
Chr2	exon	55959543	55959630	55959543	ID=MsG0280009667.01.T01:exon:5936;Parent=MsG0280009667.01.T01
Chr2	exon	55959914	55962354	55959914	ID=MsG0280009667.01.T01:exon:5935;Parent=MsG0280009667.01.T01
Chr2	CDS	55956953	55957003	55956953	ID=MsG0280009667.01.T01:cds;Parent=MsG0280009667.01.T01
Chr2	CDS	55959543	55959630	55959543	ID=MsG0280009667.01.T01:cds;Parent=MsG0280009667.01.T01
Chr2	CDS	55959914	55962354	55959914	ID=MsG0280009667.01.T01:cds;Parent=MsG0280009667.01.T01

Gene Sequence

>MsG0280009667.01.T01

ATGGTAAGGTTTGATTTTTATCCTGAGTTGCCTGCTTTTAAGTGTGCAAATGTGAAGTTCACAGTGGATGAACTTCGATGGATCATGGACCTCAAACACAACATTCGGAATATGTCTGTTATTGCTCATGTCGATCACGGAAAATCAACTCTAACTGATTCTCTTGTGGCTGCTGCTGGCATTATAGCACAAGAGGTTGCAGGAGAGGTTAGGATGACAGATACTCGTCAAGATGAATCTGAGCGTGGCATAACAATCAAGTCAACCGGTATATCTCTCTACTATGAGATGAGTGATGGTGATTTGAAGAATTTCAAGGGACAACGGGAAGGGAACAAGTACCTTATAAACCTCATTGACTCACCTGGGCACGTAGATTTCTCGTCAGAGGTCACAGCCGCACTTCGCATCACCGATGGAGCACTTGTTGTGGTGGATTGTGTTGAAGGGGTCTGTGTACAAACTGAAACTGTGCTGAGACAAGCACTTGGAGAAAGGATTAAACCCGTTTTAACAGTTAACAAAATGGATAGATGTTTTCTTGAGCTTCATCTTGATGGAGAAGAGGCATACTCAACCATTCAGAGAGTCATTGAGAGTGTGAACGTCGTCATGGCAACATATGAAGATGCTTTACTTGGTGATGTTCAGGTTTACCCTGAAAAGGGAACAGTTTCTTTTTCAGCTGGTTTACATGGATGGTCTTTTACTCTCACCAACTTTGCTAAGATGTATGCTTCAAAGTTTGGAGTTGATGAGGAGAAGATGATGAATAGGCTTTGGGGTGAGAATTTCTTTGACTCTTCTACCAAAAAGTGGACCAACAAGCACACATCGACGCCTACTTGCAAGCGCGGTTTTGTTCAGTTTTGTTATGAACCAATCAAGCAGATTATTGAACTTTGTATGAATGATCAGAAGGGTAAGTTGTGGCCGATGTTGCAGAAACTTGGGGTGAATTTGAAGTCAGAAGAGAAAGAATTAACAGGAAAGGCTTTGATGAAGCGTGTTATGCAGAGTTGGCTCCCAGCTAGTACTGCCCTTTTGGAGATGATGATTTTTCACCTTCCTTCTCCTGCCAAGGCTCAAAAGTATCGTGTCGAGAATTTGTATGAGGGCCCCCTTGATGATCCTTATGCTTCTGCGATCCGAAATTGTGATCCTGAAGGACCTTTAATACTTTATGTCTCAAAGATGATTCCTGCCTCTGATAATGGTAGGTTTTATGCTTTCGGTCGTGTGTTTTCAGGTAAGGTTTCAACTGGTATGAAGGTCAGAATTATGGGACCAAATTATATCCCTGGGGAGAAGAAAGATTTGTATTTGAAAAGTGTTCAGAGAACGGTTATTTGGATGGGAAAGAAGCAAGAAACGGTGGAGGATGTCCCTTGTGGAAATACAGTTGCCATGGTGGGTTTGGATCAATTCATTACCAAGAATGCTACTTTAACAAATGAGAAAGAAGTCGACGCACACCCTATTAGAGCTATGAAGTTTTCAGTGTCACCTGTGGGAAGTGTAGCAGTTACATGCAAGGTTGCATCTGATCTTCCCAAGCTAGTCGAAGGCCTTAAACGGTTAGCAAAGTCAGATCCCATGGTGGCGTGTACAATTTCAGAGACTGGAGAACATATCATAGCTGCTGCTGGTGAGCTGCATCTTGAAATCTGCTTGAAGGATTTGCAGGATGATTTCATGAATGGAGCTGAGATTACAAAATCAGATCCTATCGTTTCTTTCCGCGAGACTGTGCTTGAGAAGTCTAGCCATACTGTGATGAGCAAGTCACCAAACAAACACAACCGTTTATACATGGAAGCAAGGCCAATGGAGGAAGGGCTTGCAGAGGCCATCGATGATGGAAAGATTGGACCAAGGGATGACCCAAAAAACCGTTTAAAAATATTGTCTGACGAGTTTGGTTGGGACAAAGATATTGCCAAAAAAGTATGGTGTTTCGGCCCTGAGACAACAGGTCCCAACATGGTGGTAGACACATGTAAAGGCGTACAATATCTGAACGAAATCAAGGACTCTGTCGTTACAGGTTTTCAGATGGCGTCAAAAGAAGGTCCAATGGCTGATGAGAACCTGCGAGGAGTCTGTTTTGAGGTTTGTGATGTTGTTCTTCATACTGATGCCATTCACAGAGGAGGCGGCCAGATCATTCCAACTGCTAGAAGAGTGTTCTATGCTGCTATGCTTACAGCAAAGCCGAGACTTCTAGAGCCGGTGTATCTGGTTGAAATACAAGCACCTGAACATGCTCTTGGAGGTATATACAGTGTTCTTAATCAGAAAAGAGGTCATGTGTTTGACGAATTCCAGAGGCCTAACACCCCACTTTACAATGTTAAGGCATACTTGCCTGTTATTGAATCATTTCAATTCAATGAATCATTAAGGGCTCAAACTGGAGGACAGGCTTTCCCTCAGTTGGTATTTGACCACTGGGATATGTTGCCATCTGATCCGTTAGAACCCGGGACACCAGCTGCTGCACGCGTTGTCGAGATAAGAAAAAAGAAAGGTTTAAAGGATCAGCTGATTCCTCTCTCCGAGTTCGAGGACAAGCTTTAA

Protein sequence

>MsG0280009667.01.T01

MVRFDFYPELPAFKCANVKFTVDELRWIMDLKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGEVRMTDTRQDESERGITIKSTGISLYYEMSDGDLKNFKGQREGNKYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCVEGVCVQTETVLRQALGERIKPVLTVNKMDRCFLELHLDGEEAYSTIQRVIESVNVVMATYEDALLGDVQVYPEKGTVSFSAGLHGWSFTLTNFAKMYASKFGVDEEKMMNRLWGENFFDSSTKKWTNKHTSTPTCKRGFVQFCYEPIKQIIELCMNDQKGKLWPMLQKLGVNLKSEEKELTGKALMKRVMQSWLPASTALLEMMIFHLPSPAKAQKYRVENLYEGPLDDPYASAIRNCDPEGPLILYVSKMIPASDNGRFYAFGRVFSGKVSTGMKVRIMGPNYIPGEKKDLYLKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVGSVAVTCKVASDLPKLVEGLKRLAKSDPMVACTISETGEHIIAAAGELHLEICLKDLQDDFMNGAEITKSDPIVSFRETVLEKSSHTVMSKSPNKHNRLYMEARPMEEGLAEAIDDGKIGPRDDPKNRLKILSDEFGWDKDIAKKVWCFGPETTGPNMVVDTCKGVQYLNEIKDSVVTGFQMASKEGPMADENLRGVCFEVCDVVLHTDAIHRGGGQIIPTARRVFYAAMLTAKPRLLEPVYLVEIQAPEHALGGIYSVLNQKRGHVFDEFQRPNTPLYNVKAYLPVIESFQFNESLRAQTGGQAFPQLVFDHWDMLPSDPLEPGTPAAARVVEIRKKKGLKDQLIPLSEFEDKL*